ID:

dsi_14124

 Coordinate:

3r:19606387-19606536 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-5.6 -5.6 -5.6 -5.6

Flybase annnotation

three_prime_UTR [3r_19605669_19607931_+]; exon [3r_19605630_19607931_+]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+

Sense Strand Reads

##########################################################################################################################################################################################################################################################
GTTAGGATAAAAGTCAGTCTTATGAATGAAACATTAAATTGAAATGTTTAGCGCCAGCTAAAGTTAAAGTACACACAAACTTTTATTACAACACTTATACATAAATACATCTATATATATATTTAATAACATTAATAAAGGCAACAAATGAATGTCGAAACTGTAAATTCAAGGCGCGCACTATTCTCTATATTCCCCAGTTTTTCCACGACAAAAAACAAACCCCAAACTAAACTAAACAACAAGAAGC
*********************************************************************........................................................((...........((((......(((((.............)))))......)).))))****************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 M025
embryo
 SRR902009
testis
 M023
head
 M024
male body		 O001
Testis
..TAGGATAAAAGTCAGTCTTATGAATGA............................................................................................................................................................................................................................. 27 0 1 6.00 6 3 2 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................TGAATGTCGAAACTGTAAAAAA................................................................................ 22 3 1 3.00 3 0 1 1 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................AAATGAATGTCGAAACTGTAAAAA................................................................................. 24 2 1 3.00 3 1 0 0 0 0 0 0 2 0 0 0 0 0
....................................................................................................................................................TGAATGTCGAAACTGTAAAAAAA............................................................................... 23 3 1 3.00 3 1 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................AACTGTAAATTCAAGGCGCGCACTAT.................................................................. 26 0 1 3.00 3 0 0 3 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................AAATGAATGTCGAAACTGTAAAAAAAA.............................................................................. 27 3 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
.......................................TGAAATGTTTAGCGCCAGCTAAAGT.......................................................................................................................................................................................... 25 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0
..............................................................................................................................................................AACTGTAAATTCAAGGCGCGCACTA................................................................... 25 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................GCAACAAATGAATGTCGAAACTGT...................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0
......................TGAATGAAACATTAAATTGAAATGTTT......................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................TACACACAAACTTTTATTACAACACTT.......................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
....................TATGAATGAAACATTAAATTGAAATGTT.......................................................................................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................CGCCAGTTAAGGTTAAAGT.................................................................................................................................................................................... 19 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............GTCAGCCTTATGAATGAAAC.......................................................................................................................................................................................................................... 20 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..................CTTATGAATGAAACATTAAATTGAAAT............................................................................................................................................................................................................. 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................TGAATGTCGAAACTGTAAAT.................................................................................. 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................TCTATATTCCCCAGTTTTTCCAGGACA..................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................TGAATGTCGAAACTGTAAAA.................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................TGAATGTCGAAACTGT...................................................................................... 16 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................TTTTATTACAACACTTATACATAAATACA............................................................................................................................................. 29 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
..............................................................................................................................................AACAAATGAATGTCGAAACTGTAAA................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................GAAACTGTAAATTCAAGGCGCGCACTA................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................AACAAATGAATGTCGAAACTGTAAAAAAA............................................................................... 29 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................AAAAAACAAACCCCAAACTAAACT.............. 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................TTATACATAAATACATCTATATATA................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................ATTCAAGGCGCGCACTATTCTCTATA.......................................................... 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
................GTCTTATGAATGAAACATTAAATTGAAAT............................................................................................................................................................................................................. 29 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................TGAATGTCGAAACTGTAAAAAAAA.............................................................................. 24 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................AATAAAGGCAACAAATG.................................................................................................... 17 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................AAATGAATGTCGAAACTGTAAATT................................................................................. 24 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................TTAATAACATTAATAAAGGCAACAAT...................................................................................................... 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..TAGGATAAAAGTCAGTCTTATGAA................................................................................................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..TAGGATAAAAGTCAGTCTTATGAATGAAAA.......................................................................................................................................................................................................................... 30 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................ACAAATGAATGTCGAAAC......................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1
......................TGAATGAAACATTAAATTGAAATGTT.......................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................TGAATGTCGAAACTGTAAATTCAAGGCGC......................................................................... 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................AACTGTAAATTCAAGGCGCGCAC..................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................AACTGTAAATTCAAGGCGCGCACTATT................................................................. 27 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................ATGAATGTCGAAACTGTAAAAAAAA.............................................................................. 25 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..TAGGATAAAAGTCAGTCTTATGAATGAA............................................................................................................................................................................................................................ 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................ACAAATGAATGTCGAAACTGTAAATT................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.TTAGGATAAAAGTCAGTCTTATG.................................................................................................................................................................................................................................. 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
.................................................................................................................................................AAATGAATGTCGAAACTGTAAAAAA................................................................................ 25 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................AACTGAAAATTCAAGGCGCGCACTATT................................................................. 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................GAATGTCGAAACTGTAAAAAAA............................................................................... 22 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 1 0 0
.................................TTAAATTGAAATGTTT......................................................................................................................................................................................................... 16 0 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TATCCACGACAAAAAA................................ 16 1 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................CTGAACAACAAGAAGC 16 1 11 0.09 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..TGGGCTAGAAGTCAGTCTT..................................................................................................................................................................................................................................... 19 3 18 0.06 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.......................................TGAAATGTTTAGGACCACC................................................................................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

CAATCCTATTTTCAGTCAGAATACTTACTTTGTAATTTAACTTTACAAATCGCGGTCGATTTCAATTTCATGTGTGTTTGAAAATAATGTTGTGAATATGTATTTATGTAGATATATATATAAATTATTGTAATTATTTCCGTTGTTTACTTACAGCTTTGACATTTAAGTTCCGCGCGTGATAAGAGATATAAGGGGTCAAAAAGGTGCTGTTTTTTGTTTGGGGTTTGATTTGATTTGTTGTTCTTCG
******************************************************************........................................................((...........((((......(((((.............)))))......)).))))********************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M023
head
 O001
Testis
 SRR902009
testis
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
..........TGCAGTGAGAATACTTAC.............................................................................................................................................................................................................................. 18 2 1 3.00 3 3 0 0 0 0 0 0 0
...........ACAGTCAGAATACTTACTTTGT......................................................................................................................................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0
..............................................................................................................................................................................TTGCGTGATAAGAGATATAAGGG..................................................... 23 2 1 1.00 1 0 0 0 1 0 0 0 0
............CAGTGAGAATACTTAC.............................................................................................................................................................................................................................. 16 1 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................TGTGAATATGTATTTATGTAG........................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0
........................................................................................................................................................................................................................TTGTTTGGGGTTAGATGTCATT............ 22 3 2 0.50 1 0 0 0 0 1 0 0 0
........................................................................................................................................................................................................................TAGTTTGGGGTTTGATTTGCGT............ 22 3 3 0.33 1 0 0 0 0 1 0 0 0
..........TGCAGTGAGAATACTTACAT............................................................................................................................................................................................................................ 20 3 5 0.20 1 1 0 0 0 0 0 0 0
........................................CTTACCAAATCGCGGTC................................................................................................................................................................................................. 17 2 6 0.17 1 0 0 0 0 0 1 0 0
............................................ACAAGTCGCTGTCGATTT............................................................................................................................................................................................ 18 2 7 0.14 1 0 0 0 0 0 0 1 0
................................................................................AAAAAAATGTTGTCAATAT....................................................................................................................................................... 19 2 12 0.08 1 0 0 0 0 0 1 0 0
.................................................................................................................................................................................................................CTATTTTTTGATTGGGGTAT..................... 20 3 15 0.07 1 0 0 0 0 1 0 0 0
...........................................................................................................................................................................................................AAAGTGCTGATTTTTGTT............................. 18 2 16 0.06 1 0 0 0 0 0 0 1 0
...................................................................................ATAATGTTGCGAATA........................................................................................................................................................ 15 1 18 0.06 1 1 0 0 0 0 0 0 0
.....................................................GTTCGATGTCAATTTCAAGT................................................................................................................................................................................. 20 3 20 0.05 1 0 0 0 0 0 1 0 0
...................................................................................................................................................................................................................CTTGTTTGTTTGAGGTTTGA................... 20 3 20 0.05 1 0 1 0 0 0 0 0 0
................................................ATCGCAGTCGATTTATATT....................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:19606337-19606586 + dsi_14124 ----------------------GTTAGGAT-AA-AAGTCAGTCT-TATGAATGAAAC--------AT--TAAATTGAAATG--------------------TTTAGCGC--CAGCTAAAGTTAAAGTAC--------------------------------------------------------ACAC----------AAACTTTTATTACA---ACACTTATACATA------------------------------------------------------------AATACATCTATAT----------ATATATTTAATAACA-TTAATAAA--GGC-AA-CAAATGAAT-GTCGAAA-CTGTAAATTCAA--GGCGCGCACTATTCT--CTATAT-TCC--------CCA---G-TTTT---TCCA-CGACA-------AAAAACAAACCCCAAACTAA------A-----------------------CTAAACAACAAGAAGC---
droSec2 scaffold_0:20406781-20407028 + ----------------------GTTAGGAT-AA-AAGTCAGTCT-TATGAATGAAAC--------AT--TAAATTGAAATG--------------------TTTAGCGC--CAGCTAAAGTTAAAGTA----------------------------------------------------------CAC----------AAACTTTTATTACA---ACACTTATACATA------------------------------------------------------------AATACATCTATAT----------ATATATTTAATAACA-TTAATAAA--GGC-AA-CAAATGAAT-GTCGAAA-CTGTAAATTCAA--GGCGCGCACTATTCT--CTATAT-TCC--------CCA---G-TTTT---TCCA-CGACA-------AAAACCAAACCCCAATCTAA------A-----------------------CTAAACAACAAGAAGC---
dm3 chr3R:20074412-20074665 + ----------------------GTTAGGAT-AA-AAGTCAGTCT-TATGAATGAAAC--------AT--TAAATTGAAATG--------------------TTTAGCGC--CAGCTAAAGTTAAAATAC--------------------------------------------------------ACAC----------AAACTTTTATTACA---ACACTTATACATA------------------------------------------------------------AATACATCTATAT----------ATATATTTAATAACA-TTAATAAA--GGC-AA-CAAATGAAT-GTCGAAA-CTGTAAATTCAA--GGCGCGCACTATTCT--CTATAT-CCC--------C-A---G-TTTT---TCCC-CGATA-------AAATCCAAACCCCAAACTAA------A-CT--------A-AA--------CTAAACAACAAGAAGC---
droEre2 scaffold_4820:7987887-7988124 - ----------------------TTTAAGAT-AG-AAGTCAGTCT-TATGAATGAAAC--------AT--TAAATTGAAATG--------------------TTTAGCGC--CAGCTAAAGTTAAAGTAC--------------------------------------------------------ACAC----------AAACTTTTATTACA---ACACTTATACATA------------------------------------------------------------AATACATCTATAT----------ATATATTTAATAACA-TTAATAAA--GGC-AA-CAATTGAAT-GTCGAAA-CTGTAAATTCTA--GGCGCGCACTATTCT--CT--AT-CCC--------CCT---GTT-TT--GTCCC-CGATA-------A-------------------------A-CT--------TAAATCT------TAAACAACAAGAAGC---
droYak3 3R:26432455-26432698 - ----------------------GTTAAGAT-AG-AAGTCAGTCT-TATGAATGAAAC--------AT--TAAAGTGAAATG--------------------TTTAGCGC--CAGCTAAAGTTAAAGTAC--------------------------------------------------------ACAC----------AAACTTTTATTACA---ACACTTATACATA------------------------------------------------------------AATACATCTATAT--------ATATATATTTAATAACA-TTAATAAA--GGC-AA-CAAATGAAT-GTCGAAA-CTGTAAATTTTA--GGCGCGCACTATTCT--CT--AT-CCC--------CCT---GTT-TT--GTCCC-CGAAA-------AAAACCAAACCGC---------------------------------A---CTAAACAACAAGAAGC---
droEug1 scf7180000409798:314469-314708 - ----------------------TTTAAGAT-AG-AAGTCAGTCT-TATGAATGAAAC--------AT--TAAAATGAAATG--------------------TTTAGCGA--CAGCTAAAGTACA----C--------------------------------------------------------ACAC----------AAACTTTTATTACA---ACACTTATACATA------------------------------------------------------------AATACATATATAT--------ATATATATTTAATAACA-TTAATAAA--GGC-AA-CAAATGAAT-GTCAAAA-CTGTAAATTCTA--GGCGCGCACTTTTCT--CT--AT-TCC--------CCT-----TTTT---TACC-CA---------------------------------AAAAAAAAAAATAAA-C-ACCACCC------ACAATAAGAAGC---
droBia1 scf7180000302136:426933-427166 + ----------------------TTTAAGAT-AG-AAGTCAGTCT-TATGAATGGAAC--------AT--TAAATTGAAATG--------------------TTTAGCGC--CAGCTAAAGTACA----C--------------------------------------------------------ACAC----------AAACTTTTATTACA---ACACTTATACATA------------------------------------------------------------AATACATCTAT------------ATATATTTAATAACA-TTAATAAA--GGC-AA-CAAATGAAT-GTCGAAA-CTGTAAATTCTA--GGCGCGCACTTTTCT--ATAAAT-CCC--------CCT-----T------TCCC-CAACC-------AAAACCGA------------------A------ATG-----CACACCC------CCAACAAGAAGC---
droTak1 scf7180000415769:2372832-2373062 - ----------------------TTTAAGAT-AGAAAGTCAGTCT-TATGAATGAAAC--------AT--TAAATTGAAATG--------------------TTTAGCGC--CAGCTAAAGTACA----C--------------------------------------------------------ACAC----------AAACTTTTATTACA---ACACTTATACATA------------------------------------------------------------AATACATCTAT------------ATATATTTAATAACA-TTAATAAA--GGC-AA-CAAATGAAT-GTCGAAA-CTGTAAATTCTA--GGCGCGCACTTTTCT--CT--AT-CCC--------CCT-----T-TT----CCCCCT--------------------------------AAAAAAGA--------AAAACCACCC------ACAACAAGAAGC---
droEle1 scf7180000491008:377986-378220 + ----------------------TTTAAGCT-AA-AAGTCAGTCT-TATGAATGAAAC--------AT--TAAATTGAAATG--------------------TTTAGCGC--CAGCTAAAGTTCA----C--------------------------------------------------------ACAC----------AAACTTTTATTACA---ACACTTATACATA------------------------------------------------------------AATACATCTATAT--------AAATATATTTAATAACA-TTAATAAA--GGC-AA-CCAATGAAT-GTCGAAA-CTGTAAATTCTA--GGCGCGCACTTTTCT--CT--TA-CCC--------CCT-----T-TT----CCC-CC------------------------------CCAAAAAATA--------AAAACCACCC------ACAACAAGAAGC---
droRho1 scf7180000779477:152399-152624 + ----------------------TTTAAGAT-AG-AAGTCAGTCT-TATGAATGAAAC--------AT--TAAATTGAAATG--------------------TTTAGCGC--CAGCTAAAGTTCA----C--------------------------------------------------------ACAC----------AAACTTTTAATACA---ACACTTATACATA------------------------------------------------------------AATACATCTATAT----------ATATATTTAATAACA-TTAATAAA--GGC-AA-CAAATGAAT-GTCGAAA-CTGTAAATTCTA--GGCGCGCACTTTTCT--CT--AAACCC--------CCT-----T-TT----CCCCCA------------------------------------A------ATA-----TCCACCC------ACAACAAGAAGC---
droFic1 scf7180000453912:1239131-1239369 + ----------------------TTTAAGAT-AG-AAGTCAGTCT-TATGAATGAAAC--------AT--TAAATTGAAATG--------------------TTTAGCGC--CAGCTAAAATGCA----A--------------------------------------------------------ACAC----------AAACTTTTATTACA---ACACTTATACATA------------------------------------------------------------AATACATCTATATA------TATATATATTTAATAACA-TTAATAAA--GGC-AA-CAAATGAAT-GTCAAAT-CTGTAAATTCTA--GGCGCGCACTTTTCT--CT--AT-CCC--------CCT-----TTTT---TCCC-CA------------------------------CAACAACAAA--------AAAAACATCC------ACTACAAGAAGC---
droKik1 scf7180000302778:498332-498588 + ----------------------TTTAAGTT-TA-AAGTCAGTCT-TATGAATGAAAC--------AT--TAAAGTGAAATG--------------------TTTAGCGC--CAGCTAAG---AAGGTAC--------------------------------------------------------ACACAG------AGAAACATTTAATTCAAAAACAATTATCCATA------------------------------------------------------------ATTACATCTATATG------CATATATATTTAATAACA-TTAATAAAATGGC-AAGCAAATGAAT-GTCCAAA-TTGTACATCTTA--GGCGCACACTTTTCT--AT-----CCC--------C-T-----T-ATCACTTCA-CGAAA-------AGCAGGAAGCCGGAGACTAG------A-----------------------AAATATGACCAGAAAT---
droAna3 scaffold_13340:22422408-22422668 - ---------------------TTTTAAGAT-AG-GAGTCAGTCG-TATGAATGAAAC--------AT--TAAATTGAAATG--------------------TTTAGCGC--CAGCTAAAGG-----AAC--------------------------------------------------------ACAA----------AAACACTTACTACAA--ACACCTATACATA----------------------------------------------------------GAAATACATCTAT------------AAATATTTAATAACATTTAATAAA--GGC-AA-AAACTGAAT-GTCAAAAACCCAAAATTTTA--GGCGCGCACTATT-TCTAT--TT-CCTCTCCCTCCCCA---A-TTTC---TTTC-CGGCACCCCCAC--------------------CCAAAAAAAAAAAACAAAAAAA--------------ACGAAGAAGCTAC
droBip1 scf7180000396721:732160-732399 + ----------------------TTTAAGAT-AG-GAGTCAGTCG-TATGAATGAAAC--------AT--TAAATTGAAATG--------------------TTTAGCGC--CAGCTAAAGG-----AAC--------------------------------------------------------ACGA----------AACCATTTACTACA---ACACCTATACATA----------------------------------------------------------AAAATACATCTAT------------AAATATTTAATAACA-TTAATAAA--GGC-AA-AAAATGAAT-GTCAAAAACCCAAAATTTTA--GGCGCGCACTATT-TCTAT--TT-CCC--------C-A---T-TTCT---TTCC-CGCCC--CCCTC--------------------CCAA--AACG--------AAGA--------CTCCACGACACAAAGC---
dp5 2:14612764-14613014 + ----------------------CTTAG----AA-AAGTCGGTCT-TATGAATGAAAG--------AT--TTAAGTGAATTT-------------------TTTTAGCGC--CAGCTAAAGCACACACAC--------------------------------------------------------ACAC--------AC-AACATATATTA------CACTTATACATA------------------------------------------------------------AATACATCTATCT--------ATACATATTTAATAACA-TTAATAAA--AGC-AA-CAAATGAAT-GCCGAAATTTGTACATTTTA--GGCGCGCACTTTTCT--AT--CT-CCC--------C-AAACATTC-T--CTCCA-C-------------------------------CCATAAAACACACTTAAA-GAACCTCCTTC---ATTTAAAAGAAGC---
droPer2 scaffold_0:5804709-5804959 - ----------------------CTTAG----AA-AAGTCGGTCT-TATGAATGAAAG--------AT--TTAAGTGAATTT-------------------TTTTAGCGC--CAGCTAAAGCACACACAC--------------------------------------------------------ACAC--------AC-AACATATATTA------CACTTATACATA------------------------------------------------------------AATACATCTATCT--------ATACATATTTAATAACA-TTAATAAA--AGC-AA-CAAATGAAT-GCCGAAATTTGTACATTTTA--GGCGCGCACTTTTCT--AT--CT-CCC--------C-AAACATTC-T--CTCCA-C-------------------------------CCATAAAACACACTCAAA-GAACCTCCTTC---ATTTAAAAGAAGC---
droWil2 scf2_1100000004902:2832985-2833262 - ACACAAACACAAGAAAACTAATTTTAAGCT-AG-AAATCAGTCT-TATGAATGAAAC--------AT--TAAAGTGAAAAA--AGGAAATTATTTTTTTTTCTTAGCTTCCTAGCTAAACAACAAATAC-----------------------CACAGTACACATTACTAAACCTCCCGCTTATACATACTTAC------GTAC-TATATTA-A---ATACGTATATATATATATACACA------------------------------------------------CAAATATATATAT------------ATATATGTATT---A-TTAATAAAAATGC-AA-GAAATGAAT-GTCGAAAATTTTACATTTTAAGGTCGCGAAATTTTCT--CT---------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12855:1009777-1010018 - ----------------------TTTAAGCT-AG-AACTCAGTCC-CTTGAATGAAAA--------TT--ATAATTAATATGAA------------------ATTAGCGA--AAGCTAAAATCAT----TTACCAAACTTTAAACACAAACATTAAAACACATAA--------------------CACACATATGTATATATATATATATTCA-----TATGTATATATATA----------------------------------------------------------TATATATATATATATATATATATGCATATTAAAAATTAATTAATAAAAATGCCAC-AACATGAAT-ATTGAAA-CTGTAAAA-CTA--GGCGCGCACTTTT---------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6328:924736-924817 + ----------------------TATA----------------------------------------------------------------------------------------------------------------------------------------------------------------TAC----------ATATATATATATAT---ATATATATATATA------------------------------------------------------------TATATATATATAT----------ATATATATATGGATA-TATATGGA--GAC-AG-AAAGGGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_14906:2102550-2102798 - ---------------------TTTTAAGCTTAG-AACTCAGTCTATTTGAATGAAGAAGAAAACCATGCAAAATTCAAATGAA------------------ATTAGCGA--AAGCTTAT-----------------------------------------------------------------------------------------TTA--------CATATACATACATAAAAACCCATACACAAACAACACACATACACGAGAAAAAGAAAAACACTAAAACAG-ATTAAATATATAT--------ATTCATATTTAATGTTAATTAATAAA-ATGCAAACAACATGAATTGT-GAATACTGTAAATT-TA--GGCGCGCACTT-TCT--CT--A--------------CT-----T-TT--CTC------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
----------------------GTTAGGAT-AA-AAGTCAGTCT-TATGAATGAAAC--------AT--TAAATTGAAATG--------------------TTTAGCGC--CAGCTAAAGTTAAAGTAC--------------------------------------------------------ACAC----------AAACTTTTATTACA---ACACTTATACATA------------------------------------------------------------AATACATCTATAT----------ATATATTTAATAACA-TTAATAAA--GGC-AA-CAAATGAAT-GTCGAAA-CTGTAAATTCAA--GGCGCGCACTATTCT--CTATAT-TCC--------CCA---G-TTTT---TCCA-CGACA-------AAAAACAAACCCCAAACTAA------A-----------------------CTAAACAACAAGAAGC---SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................TAGGAT-AA-AAGTCAGTCT-TATGAATGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2716.00600000023010000000
.............................................................................................................................................................................................................................................................................................................................................................TGAAT-GTCGAAA-CTGTAAAAAA............................................................................................................................................2213.00300000010100010000
..........................................................................................................................................................................................................................................................................................................................................................AAATGAAT-GTCGAAA-CTGTAAAAA.............................................................................................................................................2413.00300000001000200000
........................................................................................................................................................................................................................................................................................................................................................................AA-CTGTAAATTCAA--GGCGCGCACTAT............................................................................................................................2613.00300000000000030000
..........................................................................TGAAATG--------------------TTTAGCGC--CAGCTAAAGT........................................................................................................................................................................................................................................................................................................................................................................................................2512.00200000000002000000
........................................................................................................................................................................................................................................................................................................................................................................AA-CTGTAAATTCAA--GGCGCGCACTA.............................................................................................................................2512.00200000000000020000
...................................................................................................................................................................................................................................................................................................................................................GC-AA-CAAATGAAT-GTCGAAA-CTGT..................................................................................................................................................2411.00101000000000000000
...............................................TGAATGAAAC--------AT--TAAATTGAAATG--------------------TTT.........................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000001000000000
..............................................................................................................................TAC--------------------------------------------------------ACAC----------AAACTTTTATTACA---ACACTT...................................................................................................................................................................................................................................................................................................2711.00100000000000001000
.............................................TATGAATGAAAC--------AT--TAAATTGAAATG--------------------TT..........................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000000000
..........................................CT-TATGAATGAAAC--------AT--TAAATTGAAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010000000000000
.............................................................................................................................................................................................................................................................................................................................................................TGAAT-GTCGAAA-CTGTAAAT..............................................................................................................................................2011.00100000000000010000
.............................................................................................................................................................................................................................................................................................................................................................TGAAT-GTCGAAA-CTGTAAAA..............................................................................................................................................2011.00100000001000000000
.............................................................................................................................................................................................................................................................................................................................................................TGAAT-GTCGAAA-CTGT..................................................................................................................................................1611.00100000000100000000
...........................................................................................................................................................................................................TTTTATTACA---ACACTTATACATA------------------------------------------------------------AATACA..........................................................................................................................................................................................................................2911.00100000000000001000
......................................................................................................................................................................................................................................................................................................................................................AA-CAAATGAAT-GTCGAAA-CTGTAAA...............................................................................................................................................2511.00100000010000000000
......................................................................................................................................................................................................................................................................................................................................................................GAAA-CTGTAAATTCAA--GGCGCGCACTA.............................................................................................................................2711.00100000001000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------AAAAACAAACCCCAAACTAA------A-----------------------CT.................2411.00100010000000000000
............................................................................................................................................................................................................................TTATACATA------------------------------------------------------------AATACATCTATAT----------ATA......................................................................................................................................................................................................2511.00100000000100000000
.................................................................................................................................................................................................................................................................................................................................................................................ATTCAA--GGCGCGCACTATTCT--CTATA..................................................................................................................2611.00100000000010000000
........................................GTCT-TATGAATGAAAC--------AT--TAAATTGAAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100010000000000000
..........................................................................................................................................................................................................................................................................................................................................AATAAA--GGC-AA-CAAATG..................................................................................................................................................................1711.00100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................AAATGAAT-GTCGAAA-CTGTAAATT.............................................................................................................................................2411.00100100000000000000
..............................................................................................................................................................................................................................................................................................................................TTAATAACA-TTAATAAA--GGC-AA-CAAT....................................................................................................................................................................2611.00100000000000010000
........................TAGGAT-AA-AAGTCAGTCT-TATGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000001000000000
........................TAGGAT-AA-AAGTCAGTCT-TATGAATGAAAA--------................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.00100000001000000000
.......................................................................................................................................................................................................................................................................................................................................................A-CAAATGAAT-GTCGAAA-C.....................................................................................................................................................1811.00100001000000000000
...............................................TGAATGAAAC--------AT--TAAATTGAAATG--------------------TT..........................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000010000000
.............................................................................................................................................................................................................................................................................................................................................................TGAAT-GTCGAAA-CTGTAAATTCAA--GGCGC...................................................................................................................................2911.00100000010000000000
........................................................................................................................................................................................................................................................................................................................................................................AA-CTGTAAATTCAA--GGCGCGCAC...............................................................................................................................2311.00100100000000000000
........................................................................................................................................................................................................................................................................................................................................................................AA-CTGTAAATTCAA--GGCGCGCACTATT...........................................................................................................................2711.00100000000000100000
........................TAGGAT-AA-AAGTCAGTCT-TATGAATGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000000100000000
.......................................................................................................................................................................................................................................................................................................................................................A-CAAATGAAT-GTCGAAA-CTGTAAATT.............................................................................................................................................2611.00100000010000000000
.......................TTAGGAT-AA-AAGTCAGTCT-TATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00110000000000000000
..........................................................................................................................................................................................................................................................................................................................................................AAATGAAT-GTCGAAA-CTGTAAAAAA............................................................................................................................................2511.00100000001000000000
..................................................................T--TAAATTGAAATG--------------------TTT.........................................................................................................................................................................................................................................................................................................................................................................................................................1640.25100000000001000000
droSec2
----------------------GTTAGGAT-AA-AAGTCAGTCT-TATGAATGAAAC--------AT--TAAATTGAAATG--------------------TTTAGCGC--CAGCTAAAGTTAAAGTA----------------------------------------------------------CAC----------AAACTTTTATTACA---ACACTTATACATA------------------------------------------------------------AATACATCTATAT----------ATATATTTAATAACA-TTAATAAA--GGC-AA-CAAATGAAT-GTCGAAA-CTGTAAATTCAA--GGCGCGCACTATTCT--CTATAT-TCC--------CCA---G-TTTT---TCCA-CGACA-------AAAACCAAACCCCAATCTAA------A-----------------------CTAAACAACAAGAAGC---SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................................................................................................................................................................................................................TACA---ACACTTATACATA------------------------------------------------------------AATACATCTA......................................................................................................................................................................................................................2711.0011000
.....................................................................TAAATTGAAATG--------------------TTTAGCGC--CAGCT.............................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100
........................................................................ATTGAAATG--------------------TTTAGCGC--CAG...............................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001
......................GTTAGGAT-AA-AAGTCAGTCT-TATGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
dm3
----------------------GTTAGGAT-AA-AAGTCAGTCT-TATGAATGAAAC--------AT--TAAATTGAAATG--------------------TTTAGCGC--CAGCTAAAGTTAAAATAC--------------------------------------------------------ACAC----------AAACTTTTATTACA---ACACTTATACATA------------------------------------------------------------AATACATCTATAT----------ATATATTTAATAACA-TTAATAAA--GGC-AA-CAAATGAAT-GTCGAAA-CTGTAAATTCAA--GGCGCGCACTATTCT--CTATAT-CCC--------C-A---G-TTTT---TCCC-CGATA-------AAATCCAAACCCCAAACTAA------A-CT--------A-AA--------CTAAACAACAAGAAGC---SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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..............................................................................................................................................................................................................................................................................................................................................................GAAT-GTCGAAA-CTGTAAATT.............................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................TGAAATG--------------------TTTAGCGC--CAGCTAAAGT........................................................................................................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000100000000000000000000000000000000000
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...........................................................................................................................................................................................................................................................................................................................................................AATGAAT-GTCGAAA-CTGTAA................................................................................................................................................2013.0030000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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...............................................................................................................................................................................................................................................................................................................................................................................................CACTATTCT--CTATAT-CCC--------C-A---G-TTT..........................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................TGAAATG--------------------TTTAGCGC--CAGCTAAAGTT.......................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................TTAGGAT-AA-AAGTCAGTCT-TATGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................TAATAAA--GGC-AA-CAAATGAAT-G.............................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................AAATGAAT-GTCGAAA-CTGT..................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAA------A-CT--------A-AA--------CTAAACAACAAGAAG....2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................TTAGGAT-AA-AAGTCAGTCT-TATGAATGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................................................................................................................................................................................................................................................................................................................................AAATGAAT-GTCGAAA-CTGTAAA...............................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................TATTTAATAACA-TTAATAAA--...............................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................T-AA-AAGTCAGTCT-TATGAATGAAAC--------................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................TAACA-TTAATAAA--GGC-AA-CAAATGAAT-G.............................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................AATAAA--GGC-AA-CAAATGAAT-GTCGAA........................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................ATGAAT-GTCGAAA-CTGTAAAAAA............................................................................................................................................2330.6720000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................AATGAAT-GTCGAAA-CTGTAAAAAA............................................................................................................................................2420.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................CAAATGAAT-GTCGAAA-CTA...................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
----------------------TTTAAGAT-AG-AAGTCAGTCT-TATGAATGAAAC--------AT--TAAATTGAAATG--------------------TTTAGCGC--CAGCTAAAGTTAAAGTAC--------------------------------------------------------ACAC----------AAACTTTTATTACA---ACACTTATACATA------------------------------------------------------------AATACATCTATAT----------ATATATTTAATAACA-TTAATAAA--GGC-AA-CAATTGAAT-GTCGAAA-CTGTAAATTCTA--GGCGCGCACTATTCT--CT--AT-CCC--------CCT---GTT-TT--GTCCC-CGATA-------A-------------------------A-CT--------TAAATCT------TAAACAACAAGAAGC---SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................T--AT-CCC--------CCT---GTT-TT--GTCCC-CGATA-------A-------------------------A-C........................................2711.0011000000
....................................................................................................................................................................................................................................................................................................................................................................................CTA--GGCGCGCACTATTCT--CT--AT-CCC--------CCC---...............................................................................................2811.0010100000
..........................................................................................................................................................................................................................................................................................................................................................................................................CT--AT-CCC--------CCT---GTT-TT--GTCCC-CGAT.............................................................................2411.0010000100
.........................AAGAT-AG-AAGTCAGTCT-TATGAATGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
............................................................................................................................................................................................................................................................................................................................................TAAA--GGC-AA-CAATTGAAT-GT............................................................................................................................................................2011.0010001000
...................................................................................................................................................................................................................................................................................................................................AACA-TTAATAAA--GGC-AA-CAATTGAAT-GT............................................................................................................................................................2811.0010100000
......................................................................................................................................................................................................................................................................................................................................................AA-CAATTGAAT-GTCGAAA-C.....................................................................................................................................................1911.0010100000
...............................................................................................................................................................................................................................................................................................................................................................AAT-GTCGAAA-CTGTAAATTCT...........................................................................................................................................2111.0011000000
................................................................................................................................................................................................................................................................................................................................................................AT-GTCGAAA-CTGTAAATTCTA--........................................................................................................................................2111.0010000100
...............................................................................................................................................................................................................................................................................................................................................................................................CACTATTCT--CT--AT-CCC--------CCT---GTT-TT--G......................................................................................2511.0011000000
..............................................................................ATG--------------------TTTAGCGC--CAGCTAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
............................AT-AG-AAGTCAGTCT-TATGAATGAAAC--------................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000
.................................................................AT--TAAATTGAAATG--------------------TTTAGCGC--C.................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100
droYak3
----------------------GTTAAGAT-AG-AAGTCAGTCT-TATGAATGAAAC--------AT--TAAAGTGAAATG--------------------TTTAGCGC--CAGCTAAAGTTAAAGTAC--------------------------------------------------------ACAC----------AAACTTTTATTACA---ACACTTATACATA------------------------------------------------------------AATACATCTATAT--------ATATATATTTAATAACA-TTAATAAA--GGC-AA-CAAATGAAT-GTCGAAA-CTGTAAATTTTA--GGCGCGCACTATTCT--CT--AT-CCC--------CCT---GTT-TT--GTCCC-CGAAA-------AAAACCAAACCGC---------------------------------A---CTAAACAACAAGAAGC---SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................GAT-AG-AAGTCAGTCT-TATGAATGAAAC--------................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.00220000000000
......................................................................................................................................................................................................................................................................................................................................................AA-CAAATGAAT-GTCGAAA-CTGTAAAAA.............................................................................................................................................2711.00100000010000
.....................................................................................................................................................................................................................................................................................................................................CA-TTAATAAA--GGC-AA-CAAATGAA................................................................................................................................................................2311.00100000010000
................................G-AAGTCAGTCT-TATGAATGAAAC--------................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
............................................................................................................................................................................................................................................................................................................................................................ATGAAT-GTCGAAA-CTGTA.................................................................................................................................................1811.00100010000000
...........................................................................................................................................................................................................................................................................................................................................................................CTGTAAATTTTA--GGCGCGCACTATTCT--.......................................................................................................................2711.00101000000000
.............................................................................................................................................................................................................TTATTACA---ACACTTATACATA------------------------------------------------------------A...............................................................................................................................................................................................................................2211.00100000010000
...........................................................................................................................................................................................................................................................................................................................................................AATGAAT-GTCGAAA-CTGTAAATTTT...........................................................................................................................................2511.00100000000001
........................................................................AGTGAAATG--------------------TTTAGCGC--CAGC..............................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
.................................................................AT--TAAAGTGAAATG--------------------TTTAGCGC--..................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
droEug1
----------------------TTTAAGAT-AG-AAGTCAGTCT-TATGAATGAAAC--------AT--TAAAATGAAATG--------------------TTTAGCGA--CAGCTAAAGTACA----C--------------------------------------------------------ACAC----------AAACTTTTATTACA---ACACTTATACATA------------------------------------------------------------AATACATATATAT--------ATATATATTTAATAACA-TTAATAAA--GGC-AA-CAAATGAAT-GTCAAAA-CTGTAAATTCTA--GGCGCGCACTTTTCT--CT--AT-TCC--------CCT-----TTTT---TACC-CA---------------------------------AAAAAAAAAAATAAA-C-ACCACCC------ACAATAAGAAGC---SizeHit CountTotal NormTotal
No Reads
droBia1
----------------------TTTAAGAT-AG-AAGTCAGTCT-TATGAATGGAAC--------AT--TAAATTGAAATG--------------------TTTAGCGC--CAGCTAAAGTACA----C--------------------------------------------------------ACAC----------AAACTTTTATTACA---ACACTTATACATA------------------------------------------------------------AATACATCTAT------------ATATATTTAATAACA-TTAATAAA--GGC-AA-CAAATGAAT-GTCGAAA-CTGTAAATTCTA--GGCGCGCACTTTTCT--ATAAAT-CCC--------CCT-----T------TCCC-CAACC-------AAAACCGA------------------A------ATG-----CACACCC------CCAACAAGAAGC---SizeHit CountTotal NormTotal
No Reads
droTak1
----------------------TTTAAGAT-AGAAAGTCAGTCT-TATGAATGAAAC--------AT--TAAATTGAAATG--------------------TTTAGCGC--CAGCTAAAGTACA----C--------------------------------------------------------ACAC----------AAACTTTTATTACA---ACACTTATACATA------------------------------------------------------------AATACATCTAT------------ATATATTTAATAACA-TTAATAAA--GGC-AA-CAAATGAAT-GTCGAAA-CTGTAAATTCTA--GGCGCGCACTTTTCT--CT--AT-CCC--------CCT-----T-TT----CCCCCT--------------------------------AAAAAAGA--------AAAACCACCC------ACAACAAGAAGC---SizeHit CountTotal NormTotal
No Reads
droEle1
----------------------TTTAAGCT-AA-AAGTCAGTCT-TATGAATGAAAC--------AT--TAAATTGAAATG--------------------TTTAGCGC--CAGCTAAAGTTCA----C--------------------------------------------------------ACAC----------AAACTTTTATTACA---ACACTTATACATA------------------------------------------------------------AATACATCTATAT--------AAATATATTTAATAACA-TTAATAAA--GGC-AA-CCAATGAAT-GTCGAAA-CTGTAAATTCTA--GGCGCGCACTTTTCT--CT--TA-CCC--------CCT-----T-TT----CCC-CC------------------------------CCAAAAAATA--------AAAACCACCC------ACAACAAGAAGC---SizeHit CountTotal NormTotal
No Reads
droRho1
----------------------TTTAAGAT-AG-AAGTCAGTCT-TATGAATGAAAC--------AT--TAAATTGAAATG--------------------TTTAGCGC--CAGCTAAAGTTCA----C--------------------------------------------------------ACAC----------AAACTTTTAATACA---ACACTTATACATA------------------------------------------------------------AATACATCTATAT----------ATATATTTAATAACA-TTAATAAA--GGC-AA-CAAATGAAT-GTCGAAA-CTGTAAATTCTA--GGCGCGCACTTTTCT--CT--AAACCC--------CCT-----T-TT----CCCCCA------------------------------------A------ATA-----TCCACCC------ACAACAAGAAGC---SizeHit CountTotal NormTotal
No Reads
droFic1
----------------------TTTAAGAT-AG-AAGTCAGTCT-TATGAATGAAAC--------AT--TAAATTGAAATG--------------------TTTAGCGC--CAGCTAAAATGCA----A--------------------------------------------------------ACAC----------AAACTTTTATTACA---ACACTTATACATA------------------------------------------------------------AATACATCTATATA------TATATATATTTAATAACA-TTAATAAA--GGC-AA-CAAATGAAT-GTCAAAT-CTGTAAATTCTA--GGCGCGCACTTTTCT--CT--AT-CCC--------CCT-----TTTT---TCCC-CA------------------------------CAACAACAAA--------AAAAACATCC------ACTACAAGAAGC---SizeHit CountTotal NormTotal
No Reads
droKik1
----------------------TTTAAGTT-TA-AAGTCAGTCT-TATGAATGAAAC--------AT--TAAAGTGAAATG--------------------TTTAGCGC--CAGCTAAG---AAGGTAC--------------------------------------------------------ACACAG------AGAAACATTTAATTCAAAAACAATTATCCATA------------------------------------------------------------ATTACATCTATATG------CATATATATTTAATAACA-TTAATAAAATGGC-AAGCAAATGAAT-GTCCAAA-TTGTACATCTTA--GGCGCACACTTTTCT--AT-----CCC--------C-T-----T-ATCACTTCA-CGAAA-------AGCAGGAAGCCGGAGACTAG------A-----------------------AAATATGACCAGAAAT---SizeHit CountTotal NormTotal
No Reads
droAna3
---------------------TTTTAAGAT-AG-GAGTCAGTCG-TATGAATGAAAC--------AT--TAAATTGAAATG--------------------TTTAGCGC--CAGCTAAAGG-----AAC--------------------------------------------------------ACAA----------AAACACTTACTACAA--ACACCTATACATA----------------------------------------------------------GAAATACATCTAT------------AAATATTTAATAACATTTAATAAA--GGC-AA-AAACTGAAT-GTCAAAAACCCAAAATTTTA--GGCGCGCACTATT-TCTAT--TT-CCTCTCCCTCCCCA---A-TTTC---TTTC-CGGCACCCCCAC--------------------CCAAAAAAAAAAAACAAAAAAA--------------ACGAAGAAGCTACSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................T-AG-GAGTCAGTCG-TATGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
..................................GAGTCAGTCG-TATGAATGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000
......................TTTAAGAT-AG-GAGTCAGTCG-TATGAATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000010
.......................................................................................................................................................................................................................................................................................................................................................A-AAACTGAAT-GTCAAAAACCCAAAATT.............................................................................................................................................2711.001010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAAAAAAA--------------ACGAAGAA.....1920.501010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAACAAAAAAA--------------AC...........20200.102020000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAACAAAAAAA--------------AC...........22120.081010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAACAAAAAAA--------------AC...........21200.051010000
droBip1
----------------------TTTAAGAT-AG-GAGTCAGTCG-TATGAATGAAAC--------AT--TAAATTGAAATG--------------------TTTAGCGC--CAGCTAAAGG-----AAC--------------------------------------------------------ACGA----------AACCATTTACTACA---ACACCTATACATA----------------------------------------------------------AAAATACATCTAT------------AAATATTTAATAACA-TTAATAAA--GGC-AA-AAAATGAAT-GTCAAAAACCCAAAATTTTA--GGCGCGCACTATT-TCTAT--TT-CCC--------C-A---T-TTCT---TTCC-CGCCC--CCCTC--------------------CCAA--AACG--------AAGA--------CTCCACGACACAAAGC---SizeHit CountTotal NormTotal
No Reads
dp5
----------------------CTTAG----AA-AAGTCGGTCT-TATGAATGAAAG--------AT--TTAAGTGAATTT-------------------TTTTAGCGC--CAGCTAAAGCACACACAC--------------------------------------------------------ACAC--------AC-AACATATATTA------CACTTATACATA------------------------------------------------------------AATACATCTATCT--------ATACATATTTAATAACA-TTAATAAA--AGC-AA-CAAATGAAT-GCCGAAATTTGTACATTTTA--GGCGCGCACTTTTCT--AT--CT-CCC--------C-AAACATTC-T--CTCCA-C-------------------------------CCATAAAACACACTTAAA-GAACCTCCTTC---ATTTAAAAGAAGC---SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................................................................................................................................................................................................................................................................................................................................................................................T--CT-CCC--------C-AAACATTC-T--CTCCA-C-------------------------------CCA..............................................2512.0020200000000
...................................................................................................................................................................................................................................TA------------------------------------------------------------AATACATCTATCT--------ATACATATT..................................................................................................................................................................................................2412.0020000000200
....................................GTCGGTCT-TATGAATGAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
..................................................................................................................................................................................................................................................................................................................................TAACA-TTAATAAA--AGC-AA-CA......................................................................................................................................................................2011.0010000010000
.............................................................................................................................................................................................................................TATACATA------------------------------------------------------------AATACATCTATCT--------ATACATA....................................................................................................................................................................................................2811.0010000000100
.............................................TATGAATGAAAG--------AT--TTAAGTGAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000001000
........................TAG----AA-AAGTCGGTCT-TATGAATGAAAG--------A...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000000
......................CTTAG----AA-AAGTCGGTCT-TATGAATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000001000
.......................TTAG----AA-AAGTCGGTCT-TATGAATGAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
......................................................................TAAGTGAATTT-------------------TTTTAGCGC--CAGCT.............................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000100000
..........................................................................................................................CACACAC--------------------------------------------------------ACAC--------AC-AACAT....................................................................................................................................................................................................................................................................................................................18190.0510010000000
droPer2
----------------------CTTAG----AA-AAGTCGGTCT-TATGAATGAAAG--------AT--TTAAGTGAATTT-------------------TTTTAGCGC--CAGCTAAAGCACACACAC--------------------------------------------------------ACAC--------AC-AACATATATTA------CACTTATACATA------------------------------------------------------------AATACATCTATCT--------ATACATATTTAATAACA-TTAATAAA--AGC-AA-CAAATGAAT-GCCGAAATTTGTACATTTTA--GGCGCGCACTTTTCT--AT--CT-CCC--------C-AAACATTC-T--CTCCA-C-------------------------------CCATAAAACACACTCAAA-GAACCTCCTTC---ATTTAAAAGAAGC---SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........................G----AA-AAGTCGGTCT-TATGAATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002200000
..........................G----AA-AAGTCGGTCT-TATGAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
........................................................................AGTGAATTT-------------------TTTTAGCGC--CAGCT.............................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
..........................G----AA-AAGTCGGTCT-TATGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
..........................................................................................................................................................................................................................................................................................................................................................................TTTGTACATTTTA--GGCGCGCACT..............................................................................................................................2311.001100000
..........................G----AA-AAGTCGGTCT-TATGAATGAAAG--------AT--............................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
droWil2
ACACAAACACAAGAAAACTAATTTTAAGCT-AG-AAATCAGTCT-TATGAATGAAAC--------AT--TAAAGTGAAAAA--AGGAAATTATTTTTTTTTCTTAGCTTCCTAGCTAAACAACAAATAC-----------------------CACAGTACACATTACTAAACCTCCCGCTTATACATACTTAC------GTAC-TATATTA-A---ATACGTATATATATATATACACA------------------------------------------------CAAATATATATAT------------ATATATGTATT---A-TTAATAAAAATGC-AA-GAAATGAAT-GTCGAAAATTTTACATTTTAAGGTCGCGAAATTTTCT--CT---------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....................ATTTTAAGCT-AG-AAATCAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00202000
......................................................................................................................................................................................................................................................................................................................................................................GAAAATTTTACATTTTAAGGTCGCGAAAT..............................................................................................................................2911.00100100
.......................................................................................................................................................................................................................................................................................................................................................A-GAAATGAAT-GTCGAAAATTT...................................................................................................................................................2111.00110000
...................................................................................................................TAAACAACAAATAC-----------------------CACAGT...................................................................................................................................................................................................................................................................................................................................................................2011.00100010
...................................................................................................................................................................................................................................................................................................................................................................................TTTAAGGTCGCGAAATTTTCT--.......................................................................................................................2111.00100010
...........................................................................................................................................................................................................................................................................................................................................................AATGAAT-GTCGAAAATTTTACATTTT...........................................................................................................................................2611.00100010
..................................................ATGAAAC--------AT--TAAAGTGAAAAA--AGGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100001
......................................................................................................................................................................................................................................................................................................................................A-TTAATAAAAATGC-AA-GAAATG..................................................................................................................................................................2211.00100100
.........................AAGCT-AG-AAATCAGTCT-T...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
.......................................................................................................................................................................................................................................................................................................................................................A-GAAATGAAT-GTCGAAAATT....................................................................................................................................................2011.00100010
.............................................................................................................................................................................................................................................................................................................................................AAAAATGC-AA-GAAATGAAT-GT............................................................................................................................................................2111.00100010
.............................................................................................................................................................................................................................................................................................................................................................................TTACATTTTAAGGTCGCGAAAT..............................................................................................................................2211.00100001
.................................................................................................................................................................................................................................................................................................................................................ATGC-AA-GAAATGAAT-GTCGAAAAT.....................................................................................................................................................2411.00101000
droVir3
----------------------TTTAAGCT-AG-AACTCAGTCC-CTTGAATGAAAA--------TT--ATAATTAATATGAA------------------ATTAGCGA--AAGCTAAAATCAT----TTACCAAACTTTAAACACAAACATTAAAACACATAA--------------------CACACATATGTATATATATATATATTCA-----TATGTATATATATA----------------------------------------------------------TATATATATATATATATATATATGCATATTAAAAATTAATTAATAAAAATGCCAC-AACATGAAT-ATTGAAA-CTGTAAAA-CTA--GGCGCGCACTTTT---------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................AACTCAGTCC-CTTGAATGAAAA--------TT--............................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................TTAATATGAA------------------ATTAGCGA--AAGCT.............................................................................................................................................................................................................................................................................................................................................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................CAC-AACATGAAT-ATTGAAA-CTGT..................................................................................................................................................2311.001000000000000000000000000000000000000100000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................T-ATTGAAA-CTGTAAAA-CTA--GGCGCGC.................................................................................................................................2611.001000000000000000000000000100000000000000000000000000000000000000
................................................................................................................................TTACCAAACTTTAAACACAAAC...........................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................AAACACAAACATTAAAACACATA..............................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
......................................CAGTCC-CTTGAATGAAAA--------TT--............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
..........................AGCT-AG-AACTCAGTCC-CTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000100000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................TAA--------------------CACACATATGTATATATATATATTC................................................................................................................................................................................................................................................................................................................2820.501000000000000000000010000000000000000000000000000000000000000000
droMoj3
----------------------TATA----------------------------------------------------------------------------------------------------------------------------------------------------------------TAC----------ATATATATATATAT---ATATATATATATA------------------------------------------------------------TATATATATATAT----------ATATATATATGGATA-TATATGGA--GAC-AG-AAAGGGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
---------------------TTTTAAGCTTAG-AACTCAGTCTATTTGAATGAAGAAGAAAACCATGCAAAATTCAAATGAA------------------ATTAGCGA--AAGCTTAT-----------------------------------------------------------------------------------------TTA--------CATATACATACATAAAAACCCATACACAAACAACACACATACACGAGAAAAAGAAAAACACTAAAACAG-ATTAAATATATAT--------ATTCATATTTAATGTTAATTAATAAA-ATGCAAACAACATGAATTGT-GAATACTGTAAATT-TA--GGCGCGCACTT-TCT--CT--A--------------CT-----T-TT--CTC------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..............................................TTGAATGAAGAAGAAAACCATGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101

Generated: 05/18/2015 at 11:03 PM