ID:

dsi_14099

 Coordinate:

3l:11207576-11207725 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-23.7 -23.6 -23.6 -23.1

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

ACTACCACTGCCACCACCACTACCGCCGTCATCATCATCTTGGTGATGCTGCAGGAAAAGAAACAGAAATCTACTACATCATAAACTAGAAAGATGCGGTGTGGGTGGAGCGGAGCGGCGTGGAGTGGTGATGGCGATGCCTGGTGCGGATGGGTGGTTTTCGAAATTATGTTGATAACCTCGCATGATCCTGACATTAGAGCTGCTCGGGTGCTCGGCTGCTGTCGACAACGAGCGACCTGGGATGGAA
**********************************************************************************************....((..((((...((.((((((((((...(((.(((.((....((......))....)).))).)))....))))))).....)))))...))))....))***************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
..............................................................................................TGCGGTGTGGGTGGAGCGGAGCGG.................................................................................................................................... 24 0 1 22.00 22 22 0 0 0 0 0
..............................................................................................TGCGGTGTGGGTGGAGCGGAGCGGA................................................................................................................................... 25 1 1 13.00 13 13 0 0 0 0 0
..............................................................................................TGCGGTGTGGGTGGAGCGGAGCGGAG.................................................................................................................................. 26 1 1 13.00 13 13 0 0 0 0 0
..............................................................................................TGCGGTGTGGGTGGAGCGGAG....................................................................................................................................... 21 0 1 7.00 7 7 0 0 0 0 0
.................................................................................TAAACTAGAAAGATGCGGTGTGGGT................................................................................................................................................ 25 0 1 6.00 6 6 0 0 0 0 0
........................................................................................................................TGGAGTGGTGATGGCGATGCCTGG.......................................................................................................... 24 0 1 6.00 6 6 0 0 0 0 0
..............................................................................................TGCGGTGTGGGTGGAGCGGAGC...................................................................................................................................... 22 0 1 6.00 6 6 0 0 0 0 0
............................................................................................................................................................................TGATAACCTCGCATGATCCTGACAT..................................................... 25 0 1 5.00 5 5 0 0 0 0 0
.......................................................AAAAGAAACAGAAATCTACTACATC.......................................................................................................................................................................... 25 0 1 5.00 5 5 0 0 0 0 0
.......................................................AAAAGAAACAGAAATCTACTACATCA......................................................................................................................................................................... 26 0 1 5.00 5 5 0 0 0 0 0
............................................................................................................................................................................................TCCTGACATTAGAGCTGCTCGGG....................................... 23 0 1 4.00 4 4 0 0 0 0 0
..............................................................................................TGCGGTGTGGGTGGAGCGGAGCGGAA.................................................................................................................................. 26 2 1 4.00 4 4 0 0 0 0 0
..............................................................................................TGCGGTGTGGGTGGAGCGGAGCG..................................................................................................................................... 23 0 1 3.00 3 3 0 0 0 0 0
................................................................................ATAAACTAGAAAGATGCGGTGTGGG................................................................................................................................................. 25 0 1 3.00 3 3 0 0 0 0 0
..............................................................................................TGCGGTGTGGGTGGAGCGGAA....................................................................................................................................... 21 1 1 3.00 3 3 0 0 0 0 0
....................................................................................................................................................................................................TTAGAGCTGCTCGGGTGCTCGGC............................... 23 0 1 3.00 3 3 0 0 0 0 0
...................................................................................AACTAGAAAGATGCGGTGTGGGTGGAG............................................................................................................................................ 27 0 1 3.00 3 3 0 0 0 0 0
.....................................................................................................TGGGTGGAGCGGAGCGGAGTGGAG............................................................................................................................. 24 1 2 3.00 6 6 0 0 0 0 0
............................................................................................................AGCGGAGCGGAGTGGAGTGGTGATG..................................................................................................................... 25 1 1 2.00 2 2 0 0 0 0 0
...........................................TGATGCTGCAGGAAAAGAAACAGAAA..................................................................................................................................................................................... 26 0 1 2.00 2 2 0 0 0 0 0
.................................................................................TAAACTAGAAAGATGCGGTGTGGGA................................................................................................................................................ 25 1 1 2.00 2 2 0 0 0 0 0
........................................................................................................................TGGAGTGGTGATGGCGATGCCTGGT......................................................................................................... 25 0 1 2.00 2 2 0 0 0 0 0
..........................................................................TACATCATAAACTAGAAAGATGCGGTG..................................................................................................................................................... 27 0 1 2.00 2 2 0 0 0 0 0
............................................................................................................................................................................TGATAACCTCGCATGATCTTGACATTAG.................................................. 28 1 1 2.00 2 2 0 0 0 0 0
............................................................................................................................................................................TGATAACCTCGCATGATCCTGACATTAG.................................................. 28 0 1 2.00 2 2 0 0 0 0 0
..............................................................................................TGCGGTGTGGGTGGAGCGGAGCGT.................................................................................................................................... 24 1 1 2.00 2 2 0 0 0 0 0
............................................................................................................................................................................TGATAACCTCGCATGATCCTGACATT.................................................... 26 0 1 2.00 2 2 0 0 0 0 0
...................................................................................................................................TGGCGATGCCTGGTGCGGATGGG................................................................................................ 23 0 1 2.00 2 2 0 0 0 0 0
.......................................................AAAAGAAACAGAAATCTACTACATCATA....................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0
.......................................................AAAAGAAACAGAAATCTACTAC............................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................TGTGGGTGGAGCGGAGCGGAGT................................................................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0
............................................................................................................................................................................................TCCTGACATTAGAGCTGCTCGGGTG..................................... 25 0 1 1.00 1 1 0 0 0 0 0
...................................................................................AACTAGAAAGATGCGGTGTGGGT................................................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................................................................................................ATGATCCTGACATTAGAGCTGCTCGG........................................ 26 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................................................................TAGAGCTGCTCGGGTGCTCGGCTG............................. 24 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................TGCCTGGTGCGGATGGGTGGTT........................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0
............................................................................................................................................................................................TCCTGACATTAGAGCTGCTCGGGTGC.................................... 26 0 1 1.00 1 1 0 0 0 0 0
............................................................................................................................................................................................TCCTGACATTAGAGCTGCTCGGGTGCA................................... 27 1 1 1.00 1 1 0 0 0 0 0
.................................................................................TAAACTAGAAAGATGCGGTGA.................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................................AGCGGAGTGGAGTGGTGATGGCA.................................................................................................................. 23 2 1 1.00 1 1 0 0 0 0 0
.......................................................AAAAGAAACAGAAATCTACTACAT........................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................AGCGGAGTGGAGTGGTGATGGCGAAA............................................................................................................... 26 3 1 1.00 1 1 0 0 0 0 0
............................................................................................................................................................................................TCCTGACATTAGAGCTGCTCGG........................................ 22 0 1 1.00 1 1 0 0 0 0 0
.......................................................AAAAGAAACAGAAATCTACTACATAT......................................................................................................................................................................... 26 2 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................ATGGGTGGTTTTCGAAATTATG............................................................................... 22 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................TGTGGGTGGAGCGGAGCGGAG.................................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0
............................................................................................................................................................................................TCCTGACATTAGAGCTGCTCGGGT...................................... 24 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................................................................................GCTGCTCGGGTGCTCGGCTGCTGT......................... 24 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................................CGGAGTGGAGTGGTGATGGCG.................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0
..............................................................................................TGCGGTGTGGGTGGAGCGGAGCGGAAA................................................................................................................................. 27 3 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................................................................TGATCCTGACATTAGAGCTGCTCGG........................................ 25 0 1 1.00 1 1 0 0 0 0 0
.................................................................................TAAACTAGAAAGATGCGGTGTGGG................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................................................................................................................TGCTGTCGACAACGAGCGACCTGGGA..... 26 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................AGATGCGGTGTGGGTGGAGCGTTT....................................................................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
.......................................................AAAAGAAACAGAAATCTACTA.............................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................................CGGGGTGGAGTGGTGATGGCG.................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0
........................................................................................................................................................................ATGTTGATAACCTCGCATGATCCTGAC....................................................... 27 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................AAGATGCGGTGTGGGTGGAAA........................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................................................................................CTGACATTAGAGCTGCTCGGG....................................... 21 0 1 1.00 1 1 0 0 0 0 0
....................TACCGCCGTCATCATCATCTTGGTGA............................................................................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................AGCGGAGTGGAGTGGTGATGGC................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..............................................................................................TGCGGTGTGGGTGGAGCGGAAA...................................................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
.......................................................................................AGAAAGATGCGGTGTGGGTGG.............................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................................................................TATGTTGATAACCTCGCATGATCCTGACA...................................................... 29 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................GAGCGGAGTGGAGTGGTGATG..................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................................................................................TGACATTAGAGCTGCTCGGGTGC.................................... 23 0 1 1.00 1 1 0 0 0 0 0
...................................................................................AACTAGAAAGATGCGGTGTGGGTGGAA............................................................................................................................................ 27 1 1 1.00 1 1 0 0 0 0 0
..............................................................................................TGCGGTGTGGGTGGAGCGGAGCAAA................................................................................................................................... 25 3 1 1.00 1 1 0 0 0 0 0
.....................................TCTTGGTGATGCTGCAGGAAAAGAA............................................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................................................................................................TGCTCGGGTGCTCGGCTGCTGTCGAAA.................... 27 1 1 1.00 1 1 0 0 0 0 0
...................................................................................AACTAGAAAGATGCGGTGTGGGTG............................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................................................................................................GCTGCTGTCGACAACGAGCGA............ 21 0 1 1.00 1 1 0 0 0 0 0
...................................................................................AACTAGAAAGATGCGGTGTGGGTGG.............................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0
...........................................TGATGCTGCAGGAAAAGAAACAGAAAT.................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................................................TGTTGATAACCTCGCATGATCCTGAC....................................................... 26 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................................................GTTGATAACCTCGCATGATCCTGACA...................................................... 26 0 1 1.00 1 1 0 0 0 0 0
.......................................................AAAAGAAACAGAAATCTACTACATCAT........................................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0
......................................................................................TAGAAAGATGCGGTGTGGGTGGAGC........................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
..............................................................................TCATAAACTAGAAAGATGCGGTGTGGAC................................................................................................................................................ 28 2 1 1.00 1 1 0 0 0 0 0
.....................................TCTTGGTGATGCTGCAGGAAAAGAAAC.......................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
......................................................................................................................................................................................................................TCGGCTGCTGTCGACAACGAGCGA............ 24 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................................................................................................TCGACAACGAGCGACCTGGGATGGAA 26 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................AGAAAGATGCGGTGTGGGTGGAG............................................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................TGCCTGGTGCGGATGGGTGGTTTTC........................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................................................................................................................CGGCTGCTGTCGACAACGAGCGAC........... 24 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................................TGATGGCGATGCCTGGTGCGGATGGG................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................................................................................................................CGACAACGAGCGACCTGGGATGGAA 25 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................................................................TGATCCTGACATTAGAGCTGCTCG......................................... 24 0 1 1.00 1 1 0 0 0 0 0
.................................................................................TAAACTAGAAAGATGCGGTGTA................................................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
.......................................................AAAAGAAACAGAAATCTACTACACAA......................................................................................................................................................................... 26 2 1 1.00 1 1 0 0 0 0 0
.....................................................................................................TGGGTGGAGCGGAGCGGAGTGGA.............................................................................................................................. 23 1 2 1.00 2 2 0 0 0 0 0
.................................................................................................................AGCGGAGTGGAGTGGTGATGGCGAT................................................................................................................ 25 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................GCGGTGTGGGTGGAGCGG......................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................TGCGGTGTGGGTGGAGCGGAGCA..................................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................................................................................CATTAGAGCTGCACGCGCGCT................................... 21 3 2 0.50 1 0 1 0 0 0 0
............................................................................................................AGCGGAGCGGAGTGGAGTGGTGATAA.................................................................................................................... 26 3 2 0.50 1 1 0 0 0 0 0
.........................................................................................................TGGAGCGGAGCGGAGTGGAGTGGTT........................................................................................................................ 25 2 3 0.33 1 1 0 0 0 0 0
............................................GTAGCTGCAGGAAAAGAAA........................................................................................................................................................................................... 19 2 4 0.25 1 0 0 1 0 0 0
.....................................................................................................TGGGTGGAGCGGAGCGGAG.................................................................................................................................. 19 1 4 0.25 1 1 0 0 0 0 0
.........................................................................................................TGGAGCGGAGCGGAGTGGAGTGG.......................................................................................................................... 23 1 6 0.17 1 1 0 0 0 0 0
...................................................................................................................................................................................................ATTAGAGCTGCACGCGCGCT................................... 20 3 6 0.17 1 0 1 0 0 0 0
................................................................................................CGTTGTTGGTGGGGCGGAGC...................................................................................................................................... 20 3 8 0.13 1 0 0 0 1 0 0
........................................................................................................................................ATGCCTGGTTCGGAAG.................................................................................................. 16 2 20 0.10 2 0 0 0 1 0 1
.....................................................................................................................................................................................................TAGAGCTGCACGCGCGCT................................... 18 3 20 0.10 2 0 2 0 0 0 0
....................................................................................................................................................................................................TTAGAGCTGCACGCGCGCT................................... 19 3 10 0.10 1 0 1 0 0 0 0
.................................................TGCAGGACCAGAAACAGAAA..................................................................................................................................................................................... 20 2 12 0.08 1 1 0 0 0 0 0
.........................................................................................................................................................GTGGTTTTGGAAATT.................................................................................. 15 1 20 0.05 1 0 0 0 0 1 0
...........................GTCATCATCATCTCG................................................................................................................................................................................................................ 15 1 20 0.05 1 0 0 0 0 0 1
................................................CTTCAGGAAAAGAAA........................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 1 0 0
................................................CTGCAGTAAAAGAAA........................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 1 0
........................................................................................GAAAGAGGCGCTGTGGG................................................................................................................................................. 17 2 20 0.05 1 0 1 0 0 0 0

Anti-sense strand reads

TGATGGTGACGGTGGTGGTGATGGCGGCAGTAGTAGTAGAACCACTACGACGTCCTTTTCTTTGTCTTTAGATGATGTAGTATTTGATCTTTCTACGCCACACCCACCTCGCCTCGCCGCACCTCACCACTACCGCTACGGACCACGCCTACCCACCAAAAGCTTTAATACAACTATTGGAGCGTACTAGGACTGTAATCTCGACGAGCCCACGAGCCGACGACAGCTGTTGCTCGCTGGACCCTACCTT
*****************************************************....((..((((...((.((((((((((...(((.(((.((....((......))....)).))).)))....))))))).....)))))...))))....))********************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902008
ovaries
 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M053
female body
.............GGTGGTGATGGCGGCAGTAGTAGT..................................................................................................................................................................................................................... 24 0 1 87.00 87 87 0 0 0 0 0 0
................GGTGATGGCGGCAGTAGTAGT..................................................................................................................................................................................................................... 21 0 1 80.00 80 80 0 0 0 0 0 0
..............GTGGTGATGGCGGCAGTAGTAGT..................................................................................................................................................................................................................... 23 0 1 65.00 65 65 0 0 0 0 0 0
...............TGGTGATGGCGGCAGTAGTAGT..................................................................................................................................................................................................................... 22 0 1 43.00 43 43 0 0 0 0 0 0
.................GTGATGGCGGCAGTAGTAGT..................................................................................................................................................................................................................... 20 0 1 30.00 30 30 0 0 0 0 0 0
............TGGTGGTGATGGCGGCAGTAGTAGT..................................................................................................................................................................................................................... 25 0 1 23.00 23 23 0 0 0 0 0 0
...........GTGGTGGTGATGGCGGCAGTAGT........................................................................................................................................................................................................................ 23 0 1 16.00 16 16 0 0 0 0 0 0
.....................................AGAACCACTACGACGTCCTTTTCTTTGT......................................................................................................................................................................................... 28 0 1 11.00 11 11 0 0 0 0 0 0
.......................................AACCACTACGACGTCCTTTTCTTTGT......................................................................................................................................................................................... 26 0 1 11.00 11 11 0 0 0 0 0 0
...........GTGGTGGTGATGGCGGCAGT........................................................................................................................................................................................................................... 20 0 1 8.00 8 8 0 0 0 0 0 0
..............ATGGTGATGGCGGCAGTAGTAGT..................................................................................................................................................................................................................... 23 1 1 8.00 8 8 0 0 0 0 0 0
..........................................CACTACGACGTCCTTTTCTTTGT......................................................................................................................................................................................... 23 0 1 8.00 8 8 0 0 0 0 0 0
........................................ACCACTACGACGTCCTTTTCTTTGT......................................................................................................................................................................................... 25 0 1 8.00 8 8 0 0 0 0 0 0
...............................................................................................................................................................................ATTGGAGCGTACTAGGACTGTAAT................................................... 24 0 1 7.00 7 7 0 0 0 0 0 0
.........CGGTGGTGGTGATGGCGGCAGTAGT........................................................................................................................................................................................................................ 25 0 1 7.00 7 7 0 0 0 0 0 0
...............TGGTGATGGCGGCAGTAGTAGTAGAA................................................................................................................................................................................................................. 26 0 1 7.00 7 7 0 0 0 0 0 0
.............GGTGGTGATGGCGGCAGTAGT........................................................................................................................................................................................................................ 21 0 1 7.00 7 7 0 0 0 0 0 0
............TGGTGGTGATGGCGGCAGTAGT........................................................................................................................................................................................................................ 22 0 1 7.00 7 7 0 0 0 0 0 0
.................GTGATGGCGGCAGTAGTAGTAGAA................................................................................................................................................................................................................. 24 0 1 6.00 6 6 0 0 0 0 0 0
..................TGATGGCGGCAGTAGTAGT..................................................................................................................................................................................................................... 19 0 1 6.00 6 6 0 0 0 0 0 0
......................................GAACCACTACGACGTCCTTTTCTTTGT......................................................................................................................................................................................... 27 0 1 6.00 6 6 0 0 0 0 0 0
..........GGTGGTGGTGATGGCGGCAGTAGT........................................................................................................................................................................................................................ 24 0 1 6.00 6 6 0 0 0 0 0 0
...........GTGGTGGTGATGGCGGCAGTAGTAGT..................................................................................................................................................................................................................... 26 0 1 6.00 6 6 0 0 0 0 0 0
.......GACGGTGGTGGTGATGGCGGCAGT........................................................................................................................................................................................................................... 24 0 1 6.00 6 6 0 0 0 0 0 0
................GGTGATGGCGGCAGTAGTAGTAG................................................................................................................................................................................................................... 23 0 1 6.00 6 6 0 0 0 0 0 0
.............................................................................................................................................................................CTATTGGAGCGTACTAGGACTGTAAT................................................... 26 0 1 5.00 5 5 0 0 0 0 0 0
................GGTGATGGCGGCAGTAGTAGTAGAA................................................................................................................................................................................................................. 25 0 1 5.00 5 5 0 0 0 0 0 0
..............AAAGTGATGGCGGCAGTAGTAGT..................................................................................................................................................................................................................... 23 3 1 5.00 5 5 0 0 0 0 0 0
.................GTGATGGCGGCAGTAGTAGTAG................................................................................................................................................................................................................... 22 0 1 5.00 5 5 0 0 0 0 0 0
...............TGGTGATGGCGGCAGTAGTAGTAG................................................................................................................................................................................................................... 24 0 1 5.00 5 5 0 0 0 0 0 0
.........................................CCACTACGACGTCCTTTTCTTTGT......................................................................................................................................................................................... 24 0 1 4.00 4 4 0 0 0 0 0 0
..............AAGGTGATGGCGGCAGTAGTAGT..................................................................................................................................................................................................................... 23 2 1 4.00 4 4 0 0 0 0 0 0
..................................................................................................................................................................................................................................CTGTTGCTCGCTGGACCCTACCTT 24 0 1 3.00 3 3 0 0 0 0 0 0
..................TGATGGCGGCAGTAGTAGTAGAACCA.............................................................................................................................................................................................................. 26 0 1 3.00 3 3 0 0 0 0 0 0
..............GTGGTGATGGCGGCAGTAGT........................................................................................................................................................................................................................ 20 0 1 3.00 3 3 0 0 0 0 0 0
..................TGATGGCGGCAGTAGTAGTAGAA................................................................................................................................................................................................................. 23 0 1 3.00 3 3 0 0 0 0 0 0
...............TGGTGATGGCGGCAGTAGT........................................................................................................................................................................................................................ 19 0 1 3.00 3 3 0 0 0 0 0 0
.............AGTGGTGATGGCGGCAGTAGTAGT..................................................................................................................................................................................................................... 24 1 1 2.00 2 2 0 0 0 0 0 0
.................................................................................................................................................................................................................................GCTGTTGCTCGCTGGACCCTACCTT 25 0 1 2.00 2 2 0 0 0 0 0 0
.................ATGATGGCGGCAGTAGTAGTAGA.................................................................................................................................................................................................................. 23 1 1 2.00 2 2 0 0 0 0 0 0
..........AATGGTGGTGATGGCGGCAGTAGTAGT..................................................................................................................................................................................................................... 27 2 1 2.00 2 2 0 0 0 0 0 0
...............AAGTGATGGCGGCAGTAGTAGT..................................................................................................................................................................................................................... 22 2 1 2.00 2 2 0 0 0 0 0 0
...................GATGGCGGCAGTAGTAGTAGAACCA.............................................................................................................................................................................................................. 25 0 1 2.00 2 2 0 0 0 0 0 0
................AGTGATGGCGGCAGTAGTAGT..................................................................................................................................................................................................................... 21 1 1 2.00 2 2 0 0 0 0 0 0
.............AAAGGTGATGGCGGCAGTAGTAGT..................................................................................................................................................................................................................... 24 3 2 2.00 4 4 0 0 0 0 0 0
.............AATGGTGATGGCGGCAGTAGTAGT..................................................................................................................................................................................................................... 24 2 2 2.00 4 4 0 0 0 0 0 0
.........CGGTGGTGGTGATGGCGGCAGT........................................................................................................................................................................................................................... 22 0 1 2.00 2 2 0 0 0 0 0 0
..............GTGGTGATGGCGGCAGTAGTAGTAG................................................................................................................................................................................................................... 25 0 1 2.00 2 2 0 0 0 0 0 0
..............TTGGTGATGGCGGCAGTAGTAGT..................................................................................................................................................................................................................... 23 1 1 2.00 2 2 0 0 0 0 0 0
..................TGATGGCGGCAGTAGTAGTAG................................................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0
....................ATGGCGGCAGTAGTAGTAGAACCA.............................................................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................................................................................................................................CGACAGCTGTTGCTCGCTGGACCCT..... 25 0 1 1.00 1 1 0 0 0 0 0 0
..............ATGGTGATGGCGGCAGTAGTAGTA.................................................................................................................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0
...............AAATGATGGCGGCAGTAGTAGT..................................................................................................................................................................................................................... 22 3 2 1.00 2 2 0 0 0 0 0 0
.................GTGATGGCGGCAGTAGTAGTAGA.................................................................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0
...........ATGGTGGTGATGGCGGCAGTAGTAGT..................................................................................................................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0
................ATTGATGGCGGCAGTAGTAGT..................................................................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................................................................................TATTGGAGCGTACTAGGACTGTAAT................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................................................................................TATTGGAGCGTACTAGGACTGTAA.................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................................................................................AATTGGAGCGTACTAGGACTGTAAT................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................................................................................................................................GAGCCCACGAGCCGACGACAGCTGTT................... 26 0 1 1.00 1 1 0 0 0 0 0 0
................TTTGATGGCGGCAGTAGTAGT..................................................................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0
...........AAAGTGGTGATGGCGGCAGTAG......................................................................................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0
..........GGTGGTGGTGATGGCGGCAGT........................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
...............AGGTGATGGCGGCAGTAGTAGT..................................................................................................................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................................................CTACCGCTACGGACCACGCCTA................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................................................................................TAATACAACTATTGGAGCGTACTAGGA.......................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0
.............TGTGGTGATGGCGGCAGTAGTAGT..................................................................................................................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0
...........................................ACTACGACGTCCTTTTCTTTGT......................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0
...........TTGGTGGTGATGGCGGCAGTAGT........................................................................................................................................................................................................................ 23 1 1 1.00 1 1 0 0 0 0 0 0
........................................ACCACTACGACGTCCTTTTCTTGT.......................................................................................................................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................................................................................TATTGGAGCGTACTAGGACTGTAATCT................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0
.......GACGGTGGTGGTGATGGCGGCAGTAG......................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0
.........AGGTGGTGGTGATGGCGGCAGTAGT........................................................................................................................................................................................................................ 25 1 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................................................................................TATTGGAGCGTACTAGGACTGTAATC.................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0
.......GACGGTGGTGGTGATGGCGGCAGTAGT........................................................................................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0
..........................................AACTACGACGTCCTTTTCTTTGT......................................................................................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
................GGTGATGGCGGCAGTAGCAGT..................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
......................................TTACCACTACGACGTCCTTTTCTTTGT......................................................................................................................................................................................... 27 2 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................................CACCTCACCACTACCGCTACGGACCA......................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0
...................GATGGCGGCAGTAGTAGTAGAA................................................................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0
...................GATGGCGGCAGTAGTAGTAG................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0
................GGTGATGGCGGCAGTAGTAGTAGAAC................................................................................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0
.............GATGGTGATGGCGGCAGTAGTAGT..................................................................................................................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0
.......................................AACCACTACGACGTCCTTTTCTTTGTA........................................................................................................................................................................................ 27 1 1 1.00 1 1 0 0 0 0 0 0
.......AACGGTGGTGGTGATGGCGGCAGTAGT........................................................................................................................................................................................................................ 27 1 1 1.00 1 1 0 0 0 0 0 0
.................................................................................ATTTGATCTTTCTACGCCACACCCAC............................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0
......................GGCGGCAGTAGTAGTAGAACC............................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................................CACCTCACCACTACCGCTACGGA............................................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0 0
......TGACGGTGGTGGTGATGGCGGCAGT........................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................................................................................................GCGTACTAGGACTGTAATCTC................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................................................................................................ATATTGGAGCGTACTAGGACTGTAAT................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0
.....................................AAAACCACTACGACGTCCTTTTCTTTGT......................................................................................................................................................................................... 28 1 1 1.00 1 1 0 0 0 0 0 0
................AGTGATGGCGGCAGTAGTAGTAGAA................................................................................................................................................................................................................. 25 1 1 1.00 1 1 0 0 0 0 0 0
................AATGATGGCGGCAGTAGTAGT..................................................................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................................................................................................................AGCCCACGAGCCGACGACAGCTGTTGC................. 27 0 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................................................................................ACTATTGGAGCGTACTAGGACTGTAAT................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0
..............AAGGTGATGGCGGCAGTAGTAGTAGAA................................................................................................................................................................................................................. 27 2 1 1.00 1 1 0 0 0 0 0 0
............AGGGGGTGATGGCGGCAGTAGTAGT..................................................................................................................................................................................................................... 25 2 1 1.00 1 1 0 0 0 0 0 0
................GGTGATGGCGGCAGTAGTAGTAGA.................................................................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................................................................................................................................GACGAGCCCACGAGCCGACGACAGCTGTT................... 29 0 1 1.00 1 1 0 0 0 0 0 0
.............TTTGGTGATGGCGACAGTAGTAGT..................................................................................................................................................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................................................................................................AAAAGCGTACTAGGACTGTAAT................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0
..............GTGGTGATGACGGCAGTAGTAGT..................................................................................................................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
......................................................................................ATCTTTCTACGCCACACCCACCTCGC.......................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................................................................................................................................ACGAGCCGACGACAGCTGTTGCTCGCT............ 27 0 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................................................................................................................................AACGAGCCCACGAGCCGACGACAGCTGT.................... 28 1 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................................................................TACCCACCAAAAGCTTTAATACAA............................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0
.................ATGATGGCGGCAGTAGTAGT..................................................................................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................................................................................................CTATTGGAGCGTACTAGGACTGTAA.................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0
........ACGGTGGTGGTGATGGCGGCAGTAGT........................................................................................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0
............TGGTGGTGATGGCGGCAGTAGTTGT..................................................................................................................................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................................................................................................CTTGGAGCGTACTAGGACTGTAATCT................................................. 26 1 1 1.00 1 1 0 0 0 0 0 0
............TGGTGGTGATGGCGGCAGT........................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0
................GGTGATGGCGGCAGTAGT........................................................................................................................................................................................................................ 18 0 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................................................................................................................................CACGAGCCGACGACAGCTGTT................... 21 0 1 1.00 1 1 0 0 0 0 0 0
.......GACGGTGGGGGTGATGGCGGCAGT........................................................................................................................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0
...........GTGGTGGTGATGGCGGCAGTA.......................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
..............ATGGTGATGGCGGCAGTAGT........................................................................................................................................................................................................................ 20 1 1 1.00 1 1 0 0 0 0 0 0
.......................GCGGCAGTAGTAGTAGAACCA.............................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0
..........................................CACTACGAAGTCCTTTTCTTTGT......................................................................................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
.......AAAGGTGGTGGTGATGGCGGCAGT........................................................................................................................................................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0 0
......AGACGGTGGTGGTGATGGCGGCAGT........................................................................................................................................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................................................................CTACCCACCAAAAGCTTTAATACAA............................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................ACGACAGCTGTTGCTCGCTGGACC....... 24 0 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................................................CTACGGACCACGCCTACCCACCAAA.......................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0
.......................................ACCCACTACGACGTCCTTTTCTTTGT......................................................................................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0
.........................................ACACTACGACGTCCTTTTCTTTGT......................................................................................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................................................................................................ATTGGAGCGTACTAGGACTGTAATCT................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0
........AAAATGGTGGTGATGGCGGCAGTAGT........................................................................................................................................................................................................................ 26 3 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................................................................................................GCGTACTAGGACTGTAATCTCGAC............................................. 24 0 1 1.00 1 1 0 0 0 0 0 0
.....................................AGAACCACTACGACGTCCTTTTTTTTGT......................................................................................................................................................................................... 28 1 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................................................................................................................TAGGATTGTAATCTCTACG............................................ 19 2 3 0.33 1 0 1 0 0 0 0 0
...............................................................................................................................................................................ATTGGAGCGTGCTAG............................................................ 15 1 3 0.33 1 0 0 1 0 0 0 0
...........AATGTGGTGATGGCGGCAGT........................................................................................................................................................................................................................... 20 3 5 0.20 1 1 0 0 0 0 0 0
...........................................................................................................CTCGCCTCCCCGCACCACA............................................................................................................................ 19 2 5 0.20 1 0 0 0 1 0 0 0
................AAAGATGGCGGCAGTAGTAGT..................................................................................................................................................................................................................... 21 3 6 0.17 1 1 0 0 0 0 0 0
..............................................................................................ACGCCACTCCCACCTTGC.......................................................................................................................................... 18 2 6 0.17 1 0 0 0 0 1 0 0
...................................................GTCGTTGTCTTTGTCATTAGAT................................................................................................................................................................................. 22 3 7 0.14 1 0 0 0 0 0 1 0
...........................................................................................................CTAGCCTCGCAGCACATC............................................................................................................................. 18 3 10 0.10 1 0 0 0 1 0 0 0
............................................................................................................................................................................................AGGATTGTAATCTCTACGG........................................... 19 3 10 0.10 1 0 0 0 0 0 0 1
.....................................................................................................................................................................................GCGTACTAGCACTGGA..................................................... 16 2 20 0.05 1 0 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:11207526-11207775 + dsi_14099 ACTACCACTGCC-----ACCACC---ACTACCGCCGTC------ATCATC-----------------------------------------------------ATCTTG--GTGATGCTGCAGGAAAA--------------GAAACAGAAATC-TACTACATCATAAACTAGAA---AGATGCGG-TGTGGGTG-------------GAGC----------------------------------------------------------------------------------------------------------------------------------GGAGCGGCGT------GGAGTG------GTGATGG----------C-GA--------------TGC--CTGGTGCGGATGGGTG-GTTTTCGAAATTATGTTGATAACCTCGCATGATCCTGACATTAGAGCTGCTCGGGTGC--TCGG---CTGC--------------------TGTCGACAACGAGCGACCTGGGATGGA-A-------------------------
droSec2 scaffold_0:3685690-3685944 + ACTGCCACCACC-----ACCACC---ACTACCGCCGTC------ATCATC-----------------------------------------------------ATCTTG--GTGATGCTGCAGGAAAA--------------GAAACAGAAATC-TACTACATCATAAACTAGAA---AGATGCGG-TGTGGGTG-------------CAGC---------------------------------------------------------GG--------------------------------------------------------------------AGCGGAGCGGCGT------GGAGTG------GTGATGG----------C-GA--------------TGC--CTGGTGCGGATGGGTG-GTTTTCGAAATTATGTTGATAACCTCGCATGATCCTGACATTAGAGCTGCTCGGGTGC--TCGG---CTGC--------------------TGTCGACAACGAGCGACCTGGGATGGA-A-------------------------
dm3 chr3L:11477218-11477452 + ACTACCACTACC-----ACCACC---ACTAGCGCCGTC------ATCATC-----------------------------------------------------ATCTTG--GTGATGCTGCAGGAAAA--------------GAAACAGAAATC-TACTACATCATAAACTAGAA---AGATGCGG-TGTGGGTG-------------GAAC--------------------------------------------------------------------------------------------------------------------------------------------------GGA-----------GATGG----------C-GA--------------TGC--CTGGTGCGGATGGGTG-GTTTTCGAAATTATGTTGATAACCTCGCATGATCCTGACATTAGAGCTGCTCGGGTGC--TCGG---CGGC--------------------TGTCGACAACGAGCGACCTGGGATGGA-A-------------------------
droEre2 scaffold_4784:11487315-11487554 + ACTACCACTACC-----ACAGCC---ACTACCGCCGTC------ATCATC-----------------------------------------------------ATCTTG--GTGATGCTGCAGGAAAA--------------GAAACAGAAATC-TACTACATCATAAACTAGAA---AGATGCGG-AGGGGGCG-------------GAGT----------------------------------------------------------------------------------------------------------------------------------GGAGC-----------GGA-----------GCTGG----------C-GA--------------TGC--CTGGTGCGGATGGGTG-GTTTTCGAAATTATGTTGATAACCTCGCATGATCCTGACATTAGAGCTGCTCGGGTGC--TCGG---CTGC--------------------TGTCGACAATGAGCGACCTGGGATGGA-C-------------------------
droYak3 3L:11517699-11517951 + ACTACCACTACC-----ACAGCC---ACTACCGCCGTC------ATCATC-----------------------------------------------------ATCTTG--GTGATGCTGCAGGAAAA--------------GAAACAGAAATC-TACTACATCATAAACTAGAA---AGATGCGG-TGTGGGTG-------------GAGC---------------------------------------------------------AG--------------------------------------------------------------------AGTGGAGCAGAGT------GGA-----------GATGG----------C-CA--------------TGC--CTGGTGCGGATGGGTG-GTTTTCGAAATTATGTTGATAACCTCGCATGATCCTGACATTAGAGCTGCTCGGGTGC--TCGGTGGCTGC--------------------TGTCGACAACGAGCGACCTGGGAGGGA-A-------------------------
droEug1 scf7180000409711:3361192-3361437 + ACTACCACGACC-----ACTCCC---ACTACCGCTCTT------CTCATC-----------------------------------------------------ATCTTC--ATGATGCTGCAGGAAAA--------------GAAACAGAAATC-TACTACATCATAAACTAGAA---AGATGT------GGGTG-------------GAGT---------------------------------------------------------------------------------------------------------------------------------------GGCGT------G------------TGGTGG----------C-GA--------------TGG--CTGGTGCGGATGGGTG-GTTTTCGAAATTATGTTGATAACCTCGCATGATCCTGACATTAGAGCTGCTCGGTTGC--TCGG---CTGC--------------------TGTCGACAACGACCGACCTGGGATAAA-AATGGGAA---------C----GGGA
droBia1 scf7180000302193:94095-94312 - A--GCCACTACC-----ATTTCC---ACTACCGCCGTC------ATCATC-----------------------------------------------------ATCCTC--ATGATGCTGCAGGAA-A--------------GAAACAGAAATC-TACTACATCATAAACTAGGA---AGATGG-------GGTG-------------GGGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------GG----------C-GA--------------TG---CTGGTGCGGATGGGTG-GTTTTCGAAATTATGTTGATAACCTCGCATGATCCTGACATTAGAGCTGCTCGGGTGC--TCGG---C-GC--------------------TGTCGACAACGACCGACCTGGGATGAA-A-------------------------
droTak1 scf7180000415349:137923-138133 - ACTACCACCGC---------------------ACCGTC------ATCATC-----------------------------------------------------ATCTTC--ATGATGCTGCAGGAAAA--------------GAAACAGAAATC-TACTACATCATAAACTAGAA---AGATGT------GGGTG-------------GAGT--------------------------------------------------------------------------------------------------------------------------------------------------G-----------------G----------A-GA--------------TGG--CTGGTGCGGATGGGTG-GTTTTCGAAATTATGTTGATAACCTCGCATGATCCTGACATTAGAGCTGCTCGGGTGC--TCGG---CTGC--------------------TGTCGACAACGACCGACCTGGGATGAA-A-------------------------
droEle1 scf7180000490564:2426377-2426631 + ACTGCGACTACC-----ACTACC---ACTACCACCGTCATCATCATCTTC-----------------------------------------------------ATCTTC--ATGATGCGGCAGGAAAA--------------GAAACAGAAATC-TACTACATCATAAACTAGAA---AGATGT------GGGTG-------------GAGT---------------------------------------------------------GG--------------------------------------------------------------------AGTGGAGCAGAGT------GGAGTG------GAG-TGG----------A-GA--------------AGG--CTGGTGCGGATGGGTG-GTTTTCGAAATTATGTTGATAACCTCGCATGATCCTGACATTAGAGCTGCTCGGGTGC--TCGG---CTGC--------------------TGTCGACAACGAGCGACCTGGGATAAA-T-------------------------
droRho1 scf7180000766572:20510-20733 + ACTACCCAC--TATC-CTCCACC--CGCTAC---CATC------ATCATC-----------------------------------------------------ATCTTC--ATGATGCGGCAGGAAAA--------------GAAACAGAAATC-TACTACATCATAAACTAGGA---GGATGT------GGGTG-------------GAGT--------------------------------------------------------------------------------------------------------------------------------------------------G-----------------G----------A-GA--------------TGG--CTGGTGCGGATGGGTG-GTTCTCGAAATTATGTTGATAACCTCGCATGATCCTGACATTAGAGCTGCTCGGGTGC--TCGG---CTGC--------------------TGTCGACAACGACCGACCTGGGATGAA-T-------------------------
droFic1 scf7180000454113:3218997-3219265 - ACATCCACATCC-----ACTTCC---ACTACCACCGTC------GTCATC-----------------------------------------------------ATCTTC--ATGATGCTGCAGGAAAA--------------GAAACAGAAATC-TACTACATCATAAACTAGAA---AGATGG------GGGCG-------------GAGTGGCTGTGGCTGTG-------------------------------------------------------------------------AAT------GTGGA--------------TG------CGGC----------------------GATGGCGATGGCGATGG----------C-GA--------------TGC--CTGGTGCGGATGGGTG-GTTTTCGAAATTATGTTGATAACCTCGCATGATCCTGACATTAGAGCTGCTCGGTTGC--TCGGCTGCTGC--------------------TGTCGACAACGACCGACCTGGGATAAA-A-------------------------
droKik1 scf7180000302391:1353161-1353421 - ACTACCTTC--TAACCCACCACC--CACTGCCACC-TCCTCATCATCATC-----------------------------------------------------ATCCTC--ATGATGATGCAGGAAAA--------------GAAACAGAAATC-TACTACATCATAAACTAGAAGAGAGATGCTGTTGTGGGTG-------------GAGT--------------------------------------------------------------------------------------------------------------------------------------------------G-----------------G----------C-GA--------------TGGCTCTGGTGCGGATGGGTG-GTTTTCGAAATTATGTTGATAACCTCGCATGATCCTGACATTAGAGCTGCTGCTGCT---------GCTGCTGTTCGGCTGCTGCTGCTGCTGTCGACAACGACCGACCTGGGAGGGATA-------------------------
droAna3 scaffold_13337:5764165-5764463 + CCTGCCCCTGCC-----AC---C---AAGAACACCATCATCATCAGCATC-----------------------------------------------------AGCGGG--ATGATGAGGCAGGAAAA--------------GAAACAGAAATC-TACTACATCATAAACTAGAA---GCATGT------GGGTG-------------GAGT-------------------GCACCACACCGCAGTGAAGATTGG------------------AGATGCGAGATGTGAAATGGAAACGGA--------------------------------------G-------------------------------------G----------A-G-----GCGGCAGCAGCGG--CTGGTGCGGATGGGTG-GTTTTCGAAATTATGTTGATAACCTCGCATGATCCTGACATTAGAGCTGCTCG----------G---CTGC--------------------TGTCGACAACGACCGGCCTGGGAGGGA-C---CC--ATACACTTTGTGTATGGG
droBip1 scf7180000396371:1090033-1090306 + TCTCCTGCCACC-----ACGAAC---ACCATCATCATC------AGCATC-----------------------------------------------------AGCGGG--ATGATGAGGCAGGAAAA--------------GAAACAGAAATC-TACTACATCATAAACTAGAA---GCATGT------GAATG----TG-------GGT--------------GGGAGTGCACCACA--GCAGTGAAGATTGG----------------AGAGATGCGAGATGTGAAATGGAAACGGA--------------------------------------G-------------------------------------G----------A-GG--------------CGG--CTGGTGCGGATGGGTG-GTTTTCGAAATTATGTTGATAACCTCGCATGATCCTGACATTAGAGCTGCTCG----------G---CTGC--------------------TGTCGACAACGACCGGCCTGGGAGGGA-C-------------------------
dp5 XR_group6:10185848-10186067 - ACCCC--------------------------------------------------------------------------------------------------GCCCCG--ATGATGGTGCAGGAAAG--------------GAAACAGAGACC-TACTACATCATAAACTAGAA---TCATGTTG-T--GGCT-------------------------------GG----------------------------TGTTGG--------GG--------------------------------------------------------------------GGTGGAGCGGAGT------GGAGTG------------G----------CAGAGG-----------GAGG--CTGGTGCGGATGGTTGGGTTTTGGAAATTATGTTGATAACCTCGCATGATCCTGACATTAGAGCCGCTTGCTTGC--TTGC---TTCC----------------------TCGGTAGGGAT-GCCATGGGATGC--T-------------------------
droWil2 scf2_1100000004511:1983214-1983421 + ACCGCACAC-----------------GC------AGTCATCATCATCATC-----------------------------------------------------ATCTTCAGAAGAGGCAGCAAAAAAAAAAAA---------GAGAAGAAAACC-TACTACATCATAAACTAGAT---GG-------------------------------------------------------------------------------------------TGATATGCGGGATATGG---------------------------------------------------GGTGGGGCAGGGGGGAGGGGGAGTG------------G----------GAGAAGAGGCGTCATCA--GC--C---------TGGG-------TGGAAATTATGTTGATAACCTTGCATGATCCTGACATTAGAGC-------------------------------------------------------------CTGGGA-----A-------------------------
droVir3 scaffold_13049:23298324-23298513 - C-ATCATCATCA-----TCAACAAC-TTCTTTGG---------------------------------------------CTTCGC------------------AT------------TTCCAC---AA--------------AAGGCAAAACTCTTACTACATCATAAACTAGAA---ACATGT------GGGCAAATGGGGCTG--------------------GG----------------------------TTTTAGTGGTCATG-----------------------------------------------------------------TGG------------GTG---------------------------------------------------------------------GAG-------TGGAAATTATGTTGATAACCTCGCATGATCCTGACATTAGAGCTGCTCACCCT---------------------------------------------AC--CCCTCGCATCCT-C-------------------------
droMoj3 scaffold_6680:17911477-17911761 - TTCTCCTCCTCC-----TCCTCC---TTCTCTGCCTCC------TGCTTC-----------------------------------------------------AACT----------CAGCAGAAAAGTAGAAGATGAAGCGAAAAAAAAAACT-TACTACATCATAAACTAGAA---ACATGT------GGGCAACTGGAGCTGTGGGTGTGGCAATGGCTATG-------------------------------------------------------------------------GAT------GTGGTGCTGTGGTGCTGTGTCGGGCTGTGGC----------------------TGTGGCTATGGCTATGGCTGTGGCTGTGGAAGCTGGCG------GC----A---------CGAG-------TGGAAATTATGTTGATAACCTCGCATGATCCTGACATTAGAGCTGCTCTAGCTCCTTCTG---CCTC--------------------TGCC--------------------------------------------------
droGri2 scaffold_15110:14326634-14326936 + ACAACAACAACA-----AACACA---ACAAC---AATA------AGAACAAGCAAAACAACAAGCAGAAAAACATTGTGGTTCGCACAGCAAAAAAAATGCACAAAAAA--ATGAAAAGAAAAGAAAA--------------GAAAGGAAAACT-TACTACATCATAAACTAGAA---ACATGT------GGAAA-AT---------------------------AG----------------------------CCTTAGTGGTCATG-----------------------------CATGTGTGTGTGTG--------------TGTGTGTGTGG------------GTGGGCTG----------------------GTAGGTGTAAAGACTGGCG------GC----A---------CGAG-------TGGAAATTATGTTGATAACCTCGCATGATCCTGACATTAGAGCTGCCCC--------CAACTGCCTC--------------------TGCCCACATT---CAACT------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ACTACCACTGCC-----ACCACC---ACTACCGCCGTC------ATCATC-----------------------------------------------------ATCTTG--GTGATGCTGCAGGAAAA--------------GAAACAGAAATC-TACTACATCATAAACTAGAA---AGATGCGG-TGTGGGTG-------------GAGC----------------------------------------------------------------------------------------------------------------------------------GGAGCGGCGT------GGAGTG------GTGATGG----------C-GA--------------TGC--CTGGTGCGGATGGGTG-GTTTTCGAAATTATGTTGATAACCTCGCATGATCCTGACATTAGAGCTGCTCGGGTGC--TCGG---CTGC--------------------TGTCGACAACGAGCGACCTGGGATGGA-A-------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................................................................................................................................................................TGCGG-TGTGGGTG-------------GAGC----------------------------------------------------------------------------------------------------------------------------------GGAGCGG...............................................................................................................................................................................................................................24122.0022000000000000220000
.....................................................................................................................................................................................TGCGG-TGTGGGTG-------------GAGC----------------------------------------------------------------------------------------------------------------------------------GGAGCGGA..............................................................................................................................................................................................................................25113.0013000000000000130000
.....................................................................................................................................................................................TGCGG-TGTGGGTG-------------GAGC----------------------------------------------------------------------------------------------------------------------------------GGAG..................................................................................................................................................................................................................................2117.00700000000000070000
.....................................................................................................................................................................TAAACTAGAA---AGATGCGG-TGTGGGT..........................................................................................................................................................................................................................................................................................................................................................................................2516.00600000000000060000
...............................................................................................................................................................................................................................................................................................................................................................T------GGAGTG------GTGATGG----------C-GA--------------TGC--CTGG..............................................................................................................................................................2416.00600000000000060000
.....................................................................................................................................................................................TGCGG-TGTGGGTG-------------GAGC----------------------------------------------------------------------------------------------------------------------------------GGAGC.................................................................................................................................................................................................................................2216.00600000000000060000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATAACCTCGCATGATCCTGACAT........................................................................................................2515.00500000000000050000
............................................................................................................................AAAA--------------GAAACAGAAATC-TACTACATC........................................................................................................................................................................................................................................................................................................................................................................................................................2515.00500000000000050000
............................................................................................................................AAAA--------------GAAACAGAAATC-TACTACATCA.......................................................................................................................................................................................................................................................................................................................................................................................................................2615.00500000000000050000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGACATTAGAGCTGCTCGGG..........................................................................................2314.00400000000000040000
.....................................................................................................................................................................................TGCGG-TGTGGGTG-------------GAGC----------------------------------------------------------------------------------------------------------------------------------GGAGCGGAA.............................................................................................................................................................................................................................2614.00400000000000040000
.....................................................................................................................................................................................TGCGG-TGTGGGTG-------------GAGC----------------------------------------------------------------------------------------------------------------------------------GGAGCG................................................................................................................................................................................................................................2313.00300000000000030000
....................................................................................................................................................................ATAAACTAGAA---AGATGCGG-TGTGGG...........................................................................................................................................................................................................................................................................................................................................................................................2513.00300000000000030000
.....................................................................................................................................................................................TGCGG-TGTGGGTG-------------GAGC----------------------------------------------------------------------------------------------------------------------------------GGAA..................................................................................................................................................................................................................................2113.00300000000000030000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGAGCTGCTCGGGTGC--TCGG---C.............................................................................2313.00300000000000030000
.......................................................................................................................................................................AACTAGAA---AGATGCGG-TGTGGGTG-------------GAG.........................................................................................................................................................................................................................................................................................................................................................................2713.00300000000000030000
................................................................................................................TGATGCTGCAGGAAAA--------------GAAACAGAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................2612.00200000000000020000
.....................................................................................................................................................................TAAACTAGAA---AGATGCGG-TGTGGGA..........................................................................................................................................................................................................................................................................................................................................................................................2512.00200000000000020000
...............................................................................................................................................................................................................................................................................................................................................................T------GGAGTG------GTGATGG----------C-GA--------------TGC--CTGGT.............................................................................................................................................................2512.00200000000000020000
..............................................................................................................................................................TACATCATAAACTAGAA---AGATGCGG-TG...............................................................................................................................................................................................................................................................................................................................................................................................2712.00200000000000020000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATAACCTCGCATGATCCTGACATTAG.....................................................................................................2812.00200000000000020000
.....................................................................................................................................................................................TGCGG-TGTGGGTG-------------GAGC----------------------------------------------------------------------------------------------------------------------------------GGAGCGT...............................................................................................................................................................................................................................2412.00200000000000020000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATAACCTCGCATGATCCTGACATT.......................................................................................................2612.00200000000000020000
......................................................................................................................................................................................................................................................................................................................................................................................TGG----------C-GA--------------TGC--CTGGTGCGGATGGG....................................................................................................................................................2312.00200000000000020000
............................................................................................................................AAAA--------------GAAACAGAAATC-TACTACATCATA.....................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000000000010000
............................................................................................................................AAAA--------------GAAACAGAAATC-TACTAC...........................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000000000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGACATTAGAGCTGCTCGGGTG........................................................................................2511.00100000000000010000
.......................................................................................................................................................................AACTAGAA---AGATGCGG-TGTGGGT..........................................................................................................................................................................................................................................................................................................................................................................................2311.00100000000000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCCTGACATTAGAGCTGCTCGG...........................................................................................2611.00100000000000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAGCTGCTCGGGTGC--TCGG---CTG...........................................................................2411.00100000000000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................TGC--CTGGTGCGGATGGGTG-GTT..............................................................................................................................................2211.00100000000000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGACATTAGAGCTGCTCGGGTGC--.....................................................................................2611.00100000000000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGACATTAGAGCTGCTCGGGTGC--A....................................................................................2711.00100000000000010000
.....................................................................................................................................................................TAAACTAGAA---AGATGCGG-TGA..............................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000010000
............................................................................................................................AAAA--------------GAAACAGAAATC-TACTACAT.........................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGACATTAGAGCTGCTCGG...........................................................................................2211.00100000000000010000
............................................................................................................................AAAA--------------GAAACAGAAATC-TACTACATAT.......................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGTG-GTTTTCGAAATTATG..................................................................................................................................2211.00100000000000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGACATTAGAGCTGCTCGGGT.........................................................................................2411.00100000000000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCTCGGGTGC--TCGG---CTGC--------------------TGT...................................................2411.00100000000000010000
.....................................................................................................................................................................................TGCGG-TGTGGGTG-------------GAGC----------------------------------------------------------------------------------------------------------------------------------GGAGCGGAAA------......................................................................................................................................................................................................................2711.00100000000000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCCTGACATTAGAGCTGCTCGG...........................................................................................2511.00100000000000010000
.....................................................................................................................................................................TAAACTAGAA---AGATGCGG-TGTGGG...........................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGC--------------------TGTCGACAACGAGCGACCTGGGA...............................2611.00100000000000010000
..................................................................................................................................................................................AGATGCGG-TGTGGGTG-------------GAGC----------------------------------------------------------------------------------------------------------------------------------GTTT..................................................................................................................................................................................................................................2411.00100000000000010000
............................................................................................................................AAAA--------------GAAACAGAAATC-TACTA............................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTGATAACCTCGCATGATCCTGAC..........................................................................................................2711.00100000000000010000
..............................................................................................................................................................................A---AGATGCGG-TGTGGGTG-------------GAAA----------------------------------------------------------------------------------------------------------------------------------......................................................................................................................................................................................................................................2111.00100000000000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGACATTAGAGCTGCTCGGG..........................................................................................2111.00100000000000010000
............................TACCGCCGTC------ATCATC-----------------------------------------------------ATCTTG--GTGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000000010000
.....................................................................................................................................................................................TGCGG-TGTGGGTG-------------GAGC----------------------------------------------------------------------------------------------------------------------------------GGAAA.................................................................................................................................................................................................................................2211.00100000000000010000
...........................................................................................................................................................................AGAA---AGATGCGG-TGTGGGTG-------------G...........................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTTGATAACCTCGCATGATCCTGACA.........................................................................................................2911.00100000000000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACATTAGAGCTGCTCGGGTGC--.....................................................................................2311.00100000000000010000
.......................................................................................................................................................................AACTAGAA---AGATGCGG-TGTGGGTG-------------GAA.........................................................................................................................................................................................................................................................................................................................................................................2711.00100000000000010000
.....................................................................................................................................................................................TGCGG-TGTGGGTG-------------GAGC----------------------------------------------------------------------------------------------------------------------------------GGAGCAAA..............................................................................................................................................................................................................................2511.00100000000000010000
........................................................................................................TCTTG--GTGATGCTGCAGGAAAA--------------GAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000000010000
.......................................................................................................................................................................AACTAGAA---AGATGCGG-TGTGGGTG-------------............................................................................................................................................................................................................................................................................................................................................................................2411.00100000000000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---CTGC--------------------TGTCGACAACGAGCGA......................................2111.00100000000000010000
.......................................................................................................................................................................AACTAGAA---AGATGCGG-TGTGGGTG-------------G...........................................................................................................................................................................................................................................................................................................................................................................2511.00100000000000010000
................................................................................................................TGATGCTGCAGGAAAA--------------GAAACAGAAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGATAACCTCGCATGATCCTGAC..........................................................................................................2611.00100000000000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATAACCTCGCATGATCCTGACA.........................................................................................................2611.00100000000000010000
............................................................................................................................AAAA--------------GAAACAGAAATC-TACTACATCAT......................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000000010000
..........................................................................................................................................................................TAGAA---AGATGCGG-TGTGGGTG-------------GAGC----------------------------------------------------------------------------------------------------------------------------------......................................................................................................................................................................................................................................2511.00100000000000010000
..................................................................................................................................................................TCATAAACTAGAA---AGATGCGG-TGTGGAC..........................................................................................................................................................................................................................................................................................................................................................................................2811.00100000000000010000
........................................................................................................TCTTG--GTGATGCTGCAGGAAAA--------------GAAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGG---CTGC--------------------TGTCGACAACGAGCGA......................................2411.00100000000000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACAACGAGCGACCTGGGATGGA-A-------------------------2611.00100000000000010000
...........................................................................................................................................................................AGAA---AGATGCGG-TGTGGGTG-------------GAG.........................................................................................................................................................................................................................................................................................................................................................................2311.00100000000000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................TGC--CTGGTGCGGATGGGTG-GTTTTC...........................................................................................................................................2511.00100000000000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGG---CTGC--------------------TGTCGACAACGAGCGAC.....................................2411.00100000000000010000
...................................................................................................................................................................................................................................................................................................................................................................................TGATGG----------C-GA--------------TGC--CTGGTGCGGATGGG....................................................................................................................................................2611.00100000000000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACAACGAGCGACCTGGGATGGA-A-------------------------2511.00100000000000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCCTGACATTAGAGCTGCTCG............................................................................................2411.00100000000000010000
.....................................................................................................................................................................TAAACTAGAA---AGATGCGG-TGTA.............................................................................................................................................................................................................................................................................................................................................................................................2211.00100000000000010000
......................................................................................................................................................................................GCGG-TGTGGGTG-------------GAGC----------------------------------------------------------------------------------------------------------------------------------GG....................................................................................................................................................................................................................................1811.00100000000000010000
.....................................................................................................................................................................................TGCGG-TGTGGGTG-------------GAGC----------------------------------------------------------------------------------------------------------------------------------GGAGCA................................................................................................................................................................................................................................2311.00100000000000010000
droSec2
ACTGCCACCACC-----ACCACC---ACTACCGCCGTC------ATCATC-----------------------------------------------------ATCTTG--GTGATGCTGCAGGAAAA--------------GAAACAGAAATC-TACTACATCATAAACTAGAA---AGATGCGG-TGTGGGTG-------------CAGC---------------------------------------------------------GG--------------------------------------------------------------------AGCGGAGCGGCGT------GGAGTG------GTGATGG----------C-GA--------------TGC--CTGGTGCGGATGGGTG-GTTTTCGAAATTATGTTGATAACCTCGCATGATCCTGACATTAGAGCTGCTCGGGTGC--TCGG---CTGC--------------------TGTCGACAACGAGCGACCTGGGATGGA-A-------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
ACTACCACTACC-----ACCACC---ACTAGCGCCGTC------ATCATC-----------------------------------------------------ATCTTG--GTGATGCTGCAGGAAAA--------------GAAACAGAAATC-TACTACATCATAAACTAGAA---AGATGCGG-TGTGGGTG-------------GAAC--------------------------------------------------------------------------------------------------------------------------------------------------GGA-----------GATGG----------C-GA--------------TGC--CTGGTGCGGATGGGTG-GTTTTCGAAATTATGTTGATAACCTCGCATGATCCTGACATTAGAGCTGCTCGGGTGC--TCGG---CGGC--------------------TGTCGACAACGAGCGACCTGGGATGGA-A-------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................................................................................................................................................................................TGCGG-TGTGGGTG-------------GAAC--------------------------------------------------------------------------------------------------------------------------------------------------GGA-----------GATG....................................................................................................................................................................................................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATTATGTTGATAACCTCGC.....................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................TGG----------C-GA--------------TGC--CTGGTGCGGATGGGT...................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
....CCACTACC-----ACCACC---ACTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
ACTACCACTACC-----ACAGCC---ACTACCGCCGTC------ATCATC-----------------------------------------------------ATCTTG--GTGATGCTGCAGGAAAA--------------GAAACAGAAATC-TACTACATCATAAACTAGAA---AGATGCGG-AGGGGGCG-------------GAGT----------------------------------------------------------------------------------------------------------------------------------GGAGC-----------GGA-----------GCTGG----------C-GA--------------TGC--CTGGTGCGGATGGGTG-GTTTTCGAAATTATGTTGATAACCTCGCATGATCCTGACATTAGAGCTGCTCGGGTGC--TCGG---CTGC--------------------TGTCGACAATGAGCGACCTGGGATGGA-C-------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
ACTACCACTACC-----ACAGCC---ACTACCGCCGTC------ATCATC-----------------------------------------------------ATCTTG--GTGATGCTGCAGGAAAA--------------GAAACAGAAATC-TACTACATCATAAACTAGAA---AGATGCGG-TGTGGGTG-------------GAGC---------------------------------------------------------AG--------------------------------------------------------------------AGTGGAGCAGAGT------GGA-----------GATGG----------C-CA--------------TGC--CTGGTGCGGATGGGTG-GTTTTCGAAATTATGTTGATAACCTCGCATGATCCTGACATTAGAGCTGCTCGGGTGC--TCGGTGGCTGC--------------------TGTCGACAACGAGCGACCTGGGAGGGA-A-------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
ACTACCACGACC-----ACTCCC---ACTACCGCTCTT------CTCATC-----------------------------------------------------ATCTTC--ATGATGCTGCAGGAAAA--------------GAAACAGAAATC-TACTACATCATAAACTAGAA---AGATGT------GGGTG-------------GAGT---------------------------------------------------------------------------------------------------------------------------------------GGCGT------G------------TGGTGG----------C-GA--------------TGG--CTGGTGCGGATGGGTG-GTTTTCGAAATTATGTTGATAACCTCGCATGATCCTGACATTAGAGCTGCTCGGTTGC--TCGG---CTGC--------------------TGTCGACAACGACCGACCTGGGATAAA-AATGGGAA---------C----GGGASizeHit CountTotal NormTotal
No Reads
droBia1
A--GCCACTACC-----ATTTCC---ACTACCGCCGTC------ATCATC-----------------------------------------------------ATCCTC--ATGATGCTGCAGGAA-A--------------GAAACAGAAATC-TACTACATCATAAACTAGGA---AGATGG-------GGTG-------------GGGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------GG----------C-GA--------------TG---CTGGTGCGGATGGGTG-GTTTTCGAAATTATGTTGATAACCTCGCATGATCCTGACATTAGAGCTGCTCGGGTGC--TCGG---C-GC--------------------TGTCGACAACGACCGACCTGGGATGAA-A-------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
ACTACCACCGC---------------------ACCGTC------ATCATC-----------------------------------------------------ATCTTC--ATGATGCTGCAGGAAAA--------------GAAACAGAAATC-TACTACATCATAAACTAGAA---AGATGT------GGGTG-------------GAGT--------------------------------------------------------------------------------------------------------------------------------------------------G-----------------G----------A-GA--------------TGG--CTGGTGCGGATGGGTG-GTTTTCGAAATTATGTTGATAACCTCGCATGATCCTGACATTAGAGCTGCTCGGGTGC--TCGG---CTGC--------------------TGTCGACAACGACCGACCTGGGATGAA-A-------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
ACTGCGACTACC-----ACTACC---ACTACCACCGTCATCATCATCTTC-----------------------------------------------------ATCTTC--ATGATGCGGCAGGAAAA--------------GAAACAGAAATC-TACTACATCATAAACTAGAA---AGATGT------GGGTG-------------GAGT---------------------------------------------------------GG--------------------------------------------------------------------AGTGGAGCAGAGT------GGAGTG------GAG-TGG----------A-GA--------------AGG--CTGGTGCGGATGGGTG-GTTTTCGAAATTATGTTGATAACCTCGCATGATCCTGACATTAGAGCTGCTCGGGTGC--TCGG---CTGC--------------------TGTCGACAACGAGCGACCTGGGATAAA-T-------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
ACTACCCAC--TATC-CTCCACC--CGCTAC---CATC------ATCATC-----------------------------------------------------ATCTTC--ATGATGCGGCAGGAAAA--------------GAAACAGAAATC-TACTACATCATAAACTAGGA---GGATGT------GGGTG-------------GAGT--------------------------------------------------------------------------------------------------------------------------------------------------G-----------------G----------A-GA--------------TGG--CTGGTGCGGATGGGTG-GTTCTCGAAATTATGTTGATAACCTCGCATGATCCTGACATTAGAGCTGCTCGGGTGC--TCGG---CTGC--------------------TGTCGACAACGACCGACCTGGGATGAA-T-------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
ACATCCACATCC-----ACTTCC---ACTACCACCGTC------GTCATC-----------------------------------------------------ATCTTC--ATGATGCTGCAGGAAAA--------------GAAACAGAAATC-TACTACATCATAAACTAGAA---AGATGG------GGGCG-------------GAGTGGCTGTGGCTGTG-------------------------------------------------------------------------AAT------GTGGA--------------TG------CGGC----------------------GATGGCGATGGCGATGG----------C-GA--------------TGC--CTGGTGCGGATGGGTG-GTTTTCGAAATTATGTTGATAACCTCGCATGATCCTGACATTAGAGCTGCTCGGTTGC--TCGGCTGCTGC--------------------TGTCGACAACGACCGACCTGGGATAAA-A-------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
ACTACCTTC--TAACCCACCACC--CACTGCCACC-TCCTCATCATCATC-----------------------------------------------------ATCCTC--ATGATGATGCAGGAAAA--------------GAAACAGAAATC-TACTACATCATAAACTAGAAGAGAGATGCTGTTGTGGGTG-------------GAGT--------------------------------------------------------------------------------------------------------------------------------------------------G-----------------G----------C-GA--------------TGGCTCTGGTGCGGATGGGTG-GTTTTCGAAATTATGTTGATAACCTCGCATGATCCTGACATTAGAGCTGCTGCTGCT---------GCTGCTGTTCGGCTGCTGCTGCTGCTGTCGACAACGACCGACCTGGGAGGGATA-------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
CCTGCCCCTGCC-----AC---C---AAGAACACCATCATCATCAGCATC-----------------------------------------------------AGCGGG--ATGATGAGGCAGGAAAA--------------GAAACAGAAATC-TACTACATCATAAACTAGAA---GCATGT------GGGTG-------------GAGT-------------------GCACCACACCGCAGTGAAGATTGG------------------AGATGCGAGATGTGAAATGGAAACGGA--------------------------------------G-------------------------------------G----------A-G-----GCGGCAGCAGCGG--CTGGTGCGGATGGGTG-GTTTTCGAAATTATGTTGATAACCTCGCATGATCCTGACATTAGAGCTGCTCG----------G---CTGC--------------------TGTCGACAACGACCGGCCTGGGAGGGA-C---CC--ATACACTTTGTGTATGGGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............................................................................................................................................................................................................................................................................................GAAATGGAAACGGA--------------------------------------G-------------------------------------G----------A-C-----C................................................................................................................................................................................1990.111010000
droBip1
TCTCCTGCCACC-----ACGAAC---ACCATCATCATC------AGCATC-----------------------------------------------------AGCGGG--ATGATGAGGCAGGAAAA--------------GAAACAGAAATC-TACTACATCATAAACTAGAA---GCATGT------GAATG----TG-------GGT--------------GGGAGTGCACCACA--GCAGTGAAGATTGG----------------AGAGATGCGAGATGTGAAATGGAAACGGA--------------------------------------G-------------------------------------G----------A-GG--------------CGG--CTGGTGCGGATGGGTG-GTTTTCGAAATTATGTTGATAACCTCGCATGATCCTGACATTAGAGCTGCTCG----------G---CTGC--------------------TGTCGACAACGACCGGCCTGGGAGGGA-C-------------------------SizeHit CountTotal NormTotal
No Reads
dp5
ACCCC--------------------------------------------------------------------------------------------------GCCCCG--ATGATGGTGCAGGAAAG--------------GAAACAGAGACC-TACTACATCATAAACTAGAA---TCATGTTG-T--GGCT-------------------------------GG----------------------------TGTTGG--------GG--------------------------------------------------------------------GGTGGAGCGGAGT------GGAGTG------------G----------CAGAGG-----------GAGG--CTGGTGCGGATGGTTGGGTTTTGGAAATTATGTTGATAACCTCGCATGATCCTGACATTAGAGCCGCTTGCTTGC--TTGC---TTCC----------------------TCGGTAGGGAT-GCCATGGGATGC--T-------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droWil2
ACCGCACAC-----------------GC------AGTCATCATCATCATC-----------------------------------------------------ATCTTCAGAAGAGGCAGCAAAAAAAAAAAA---------GAGAAGAAAACC-TACTACATCATAAACTAGAT---GG-------------------------------------------------------------------------------------------TGATATGCGGGATATGG---------------------------------------------------GGTGGGGCAGGGGGGAGGGGGAGTG------------G----------GAGAAGAGGCGTCATCA--GC--C---------TGGG-------TGGAAATTATGTTGATAACCTTGCATGATCCTGACATTAGAGC-------------------------------------------------------------CTGGGA-----A-------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
............................................................................................................................................................................................................................................................................................................................................................GGGGGGAGGGGGAGTG------------G----------G........................................................................................................................................................................................1811.00101000
....................................................................................................................................................................................................................................................................................TGCGGGATATGG---------------------------------------------------GGTGAC...................................................................................................................................................................................................................................1811.00101000
...........................................................................................................................AAAAAAAAAA---------GAGAAGAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100100
droVir3
C-ATCATCATCA-----TCAACAAC-TTCTTTGG---------------------------------------------CTTCGC------------------AT------------TTCCAC---AA--------------AAGGCAAAACTCTTACTACATCATAAACTAGAA---ACATGT------GGGCAAATGGGGCTG--------------------GG----------------------------TTTTAGTGGTCATG-----------------------------------------------------------------TGG------------GTG---------------------------------------------------------------------GAG-------TGGAAATTATGTTGATAACCTCGCATGATCCTGACATTAGAGCTGCTCACCCT---------------------------------------------AC--CCCTCGCATCCT-C-------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
TTCTCCTCCTCC-----TCCTCC---TTCTCTGCCTCC------TGCTTC-----------------------------------------------------AACT----------CAGCAGAAAAGTAGAAGATGAAGCGAAAAAAAAAACT-TACTACATCATAAACTAGAA---ACATGT------GGGCAACTGGAGCTGTGGGTGTGGCAATGGCTATG-------------------------------------------------------------------------GAT------GTGGTGCTGTGGTGCTGTGTCGGGCTGTGGC----------------------TGTGGCTATGGCTATGGCTGTGGCTGTGGAAGCTGGCG------GC----A---------CGAG-------TGGAAATTATGTTGATAACCTCGCATGATCCTGACATTAGAGCTGCTCTAGCTCCTTCTG---CCTC--------------------TGCC--------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
ACAACAACAACA-----AACACA---ACAAC---AATA------AGAACAAGCAAAACAACAAGCAGAAAAACATTGTGGTTCGCACAGCAAAAAAAATGCACAAAAAA--ATGAAAAGAAAAGAAAA--------------GAAAGGAAAACT-TACTACATCATAAACTAGAA---ACATGT------GGAAA-AT---------------------------AG----------------------------CCTTAGTGGTCATG-----------------------------CATGTGTGTGTGTG--------------TGTGTGTGTGG------------GTGGGCTG----------------------GTAGGTGTAAAGACTGGCG------GC----A---------CGAG-------TGGAAATTATGTTGATAACCTCGCATGATCCTGACATTAGAGCTGCCCC--------CAACTGCCTC--------------------TGCCCACATT---CAACT------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/17/2015 at 06:12 PM