dsi_14096

five_prime_UTR [3r_4945965_4946025_+]; CDS [3r_4946026_4946050_+]; CDS [3r_4946128_4946228_+]; exon [3r_4946128_4946369_+]; exon [3r_4945965_4946050_+]; intron [3r_4946051_4946127_+]

##################################################-----------------------------------------------------------------------------################################################## TAAATAAACCAAAAAAATCAACAAGATGCCTTGCAAGGGATGTGGAAACAGTGAGTACCAGTCACCCCAAATGGGACAACTTATATTTTATAAAGTTATACTAATAGAATGAACTCTCCACCTCTAGACTGCCAGTGCTCAGCCGGAAAGTGCGGAGGTAACTGCGCCGGAAACAGC ************************************************((((.......))))(((....)))........((((((((..(((...))).))))))))................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M053 female body	M025 embryo	M023 head	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	O001 Testis	SRR553485 Chicharo_3 day-old ovaries	SRR902008 ovaries	GSM343915 embryo	SRR902009 testis
...................................................................................................ACTAATAGAATGAACTCTCCACCTCTAG..................................................	28	0	1	4.00	4	0	4	0	0	0	0	0	0	0	0
.............AAAATCAACAAGATGCCTTGCAAGGGAT........................................................................................................................................	28	0	1	2.00	2	2	0	0	0	0	0	0	0	0	0
..........................................................................................................................TCTAGACTGCCAGTGCTC.....................................	18	0	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................AGTGCTCAGCCGGAAAGTGCGGA.....................	23	0	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................................CTCCACCTCTAGACTGCCAGTGCTC.....................................	25	0	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.............................................................................................................................................GCCGGAAAGTGCGGAGGTAACTGCGCC.........	27	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.............................................................................................................................................GCCGGAAAGTGCGGAGGTAA................	20	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
............................................................................................................................ACAACTGCCAGTGCTCAGCCGG...............................	22	3	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................TGCCAGTGCTCAGCCGGAAAGTGCGGAGG...................	29	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................CTCTAGACTGCCAGTGCTC.....................................	19	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................ACTGCCGGTGCTAAGCCGGA..............................	20	2	2	1.00	2	0	0	0	2	0	0	0	0	0	0
...............................................................................................TTATACTAATGGAATGAACTCTCCAC........................................................	26	1	1	1.00	1	0	0	0	0	0	0	0	1	0	0
..........................................................................................................................................................GATGTAACTGCGCCGGAAAC...	20	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0
......................AAGATGCCTTGCAAGGGATGTGGA...................................................................................................................................	24	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0
....TAAACCAAAAAAATCAACAAGAT......................................................................................................................................................	23	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................GTGCGGAGGTAACTGCGCCGGAAACA..	26	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
...............................CGCAAGGGATGTGGAAACA...............................................................................................................................	19	1	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..................CAACAAGATGCCTTGCAAGGGATGTG.....................................................................................................................................	26	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
............................................................................................................................TAGACTGCCAGTGCTCAGCCGGA..............................	23	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................TGCGGAGGTAACTGCGCCGGA......	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
..................CAACAAGATGCCTTGCAAGGGATGT......................................................................................................................................	25	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.........................ATGCCTTGCAAGGGATGTGGA...................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................AACTGCGCCGGAAACA..	16	0	1	1.00	1	0	0	0	0	0	0	1	0	0	0
................GTCAACAAGATGCCTTGCAAGGGATGT......................................................................................................................................	27	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0
............................................................................................................ATGAACTCTCCACCTCTAGAC................................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................CAGCCGGAAAGTGCGGAGGTAACTGCGC..........	28	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
...............................TGCAAGGGATGTGGAAACA...............................................................................................................................	19	0	1	1.00	1	0	0	0	0	0	0	0	0	1	0
........................GATGCCTTGCAAGGGATGTGGA...................................................................................................................................	22	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
................................................................................................................................CTGCCGGTGCTAAGCCGGA..............................	19	2	2	0.50	1	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................CAACTGCCAGTGCTCAGCC.................................	19	2	3	0.33	1	0	1	0	0	0	0	0	0	0	0
...................................................................CAAATGGGACAGGATATATT..........................................................................................	20	3	17	0.12	2	0	0	0	0	0	0	0	0	0	2
...............................................................................................................................ATTGCCGGTGCTAAGCCGGA..............................	20	3	11	0.09	1	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................ACTGCCAGTGATAAGCTGGA..............................	20	3	11	0.09	1	0	0	0	0	1	0	0	0	0	0
.........................................................................................................................................CTCAGCCGGATAGAGC........................	16	2	20	0.05	1	0	0	0	0	1	0	0	0	0	0

ATTTATTTGGTTTTTTTAGTTGTTCTACGGAACGTTCCCTACACCTTTGTCACTCATGGTCAGTGGGGTTTACCCTGTTGAATATAAAATATTTCAATATGATTATCTTACTTGAGAGGTGGAGATCTGACGGTCACGAGTCGGCCTTTCACGCCTCCATTGACGCGGCCTTTGTCG ************************************************((((.......))))(((....)))........((((((((..(((...))).))))))))................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR553485 Chicharo_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	M023 head	SRR618934 dsim w501 ovaries
.............................................................................................................ACTTGAGAGCTGGAGA....................................................	16	1	3	0.33	1	1	0	0	0	0	0
.............................................................................................................................................................CATTGTCGCGGCCTTGG...	17	2	6	0.17	1	1	0	0	0	0	0
........................................................................................................................................CGAGTCGGCCTATCA..........................	15	1	8	0.13	1	0	0	1	0	0	0
.............................................................................................................ACTTGAGAGCTGGAG.....................................................	15	1	10	0.10	1	0	0	0	1	0	0
......................................................................................................................CTGGAGATGTGACGGTC..........................................	17	2	12	0.08	1	1	0	0	0	0	0
...........................................................................................................................................................TTCATTGTCGCGGCCTTGG...	19	3	13	0.08	1	0	1	0	0	0	0
..........................................................................................................CTAACTTGACAGCTGGAGA....................................................	19	3	15	0.07	1	0	0	0	0	1	0
..............................................................................................................CTTGAGAGCTGGATAT...................................................	16	2	20	0.05	1	0	0	0	0	0	1
........................................................................................................................GGAGATCAGACGGGCA.........................................	16	2	20	0.05	1	0	1	0	0	0	0

Species	Coordinate	ID	Alignment
droSim2	3r:4946001-4946177 +	dsi_14096	TAAA-TAA-----ACCA---AAAAAAT---CAACAAGATGCCTTGCAAGGGATGTGGAAACAGTGAGTACCAGTCACCC------------------CAAATGG-GACAACTT--------------ATATTTTATAAAG--------TT-------------ATACTAATAGAA-TGAAC----TCTCC-A---CCTCTAGACTGCCAGTGCTCAGCCGGAAAGTGCGGAGGTAACTGCGCCGGAAACAGC
droSec2	scaffold_27:375333-375509 +		TAAA-TAA-----ACCA---AAAAATA---CAACAATATGCCTTGCAAGGGATGTGGAAACAGTGAGTACAAATCACCC------------------CAAATGG-GACAACTT--------------ATAGTTTATAAAG--------TT-------------ATACTAATAGAA-TGAAC----TCTCC-A---CCTCTAGACTGCCAGTGCTCAGCCGGAAAGTGCGGAGGTAACTGCGCCGGAAACAGC
dm3	chr3R:16360202-16360383 -		TAAA-TAAAC--AAA-A---AACAAAT---CAACAAGATGCCTTGCAAGGGATGTGGAAACAGTGAGTACCAGTCACCC------------------CAAGTGG-GAAAACTT--------------ATATTTTATAAAG--------TA-------------ATACTAATAGAA-TGAAC----TCTCC-ACCTCTACTAGACTGCCAGTGCTCAGCCGGAAAGTGCGGAGGTAACTGCGCCGGAAACAGC
droEre2	scaffold_4770:5314063-5314245 +		TAAA-CCA-----ACCA---GAAAAAG---CAACAAGATGCCTTGCAAGGGATGTGGAAACAGTAAGTACCAGTCACCC------------------TAAATGG-GTAAACTT--------------ATATTTCATAAAG--------TT-------ATACTTGTACTAATCGAA-TGAAC----TCTCC-A---CCTTTAGACTGCCAGTGCTCAGCCGGAAAGTGCGGAAGTAACTGCGCCGGAAACAGC
droYak3	3R:5144344-5144519 -		CAAG-CAA-----ACC----AAACAAC---CAACAAGATGCCTTGCAAGGGATGTGGAAACAGTAAGTACCAGTCACCC------------------TAAATGG-GGAAACTT--------------ATATATTATAAAG--------TT-------------ATACTAATATAA-TGAAA----TCTCC-A---CCTTCAGACTGTCAGTGCTCAGCCGGAAAGTGCGGCGGTAACTGCGCCGGAAACAGC
droEug1	scf7180000409804:2687810-2687990 -		TCAA-CAA-----ACC----AAAAAAC---CAACAAGATGCCTTGCAAGGGATGCGGAAACAGTAAGTACAAGACGAAA------------------GAAGTGG-ATAAATTA--------------ATCTATTAAAATA--------GAT------GTG-TAATATTAATAAAAATAAAC----TT-TTAA-----TTTAGACTGCCAGTGCTCAGCCGGAAAGTGCGGAGGAAACTGCGCCGGAAATAGC
droBia1	scf7180000302402:9186464-9186637 -		CTAA-CCA------CC----ACAAAAC---CAACAAGATGCCTTGCAAGGGATGCGGAAACAGTAAGTACCAGACCTCC------------------TAACTAGAGGAAATCG--------------ATCTATTA-AAGG--------CA-------------ATACTAAAGGAA-A-ACC----CTTCT-A---CCTTTAGACTGCCAGTGCTCAGCCGGAAAGTGCGGAGGAAACTGCGCCGGAAACAGC
droTak1	scf7180000415630:195431-195606 -		CCAA-CAA-----ACC----AAAAAAC---CAACAAGATGCCTTGCAAGGGATGCGGAAACAGTAAGTACAAATCCTCC------------------TG---GA-GGAAATTG--------------ATCTATTAAAAGG--------TG-------------ATTCTTATAAAT-TAAACCCCTTCTTC-----TCCTTAGACTGTCAGTGCTCAGCCGGAAAGTGCGGAGGTAACTGCGCCGGAAACAGC
droEle1	scf7180000491008:547599-547775 +		ACAAGCAA-----ACC----AAAAAAC---CAACAGGATGCCTTGCAAGGGATGCGGAAACAGTAAGTAGCAGTCCACC------------------GGAATGG-GGAAATCA--------------AGCTAATATAATT--------GA-------------ATACTAATAAAA-TGAAC----CCTTT-A---ACTCTAGACTGCCAGTGCTCAGCCGGAAAGTGCGGAGGAAACTGCGCCGGAAACAGC
droRho1	scf7180000779477:341798-341974 +		TCCAACAA-----ACC----ACATAAC---CAACAAGATGCCTTGCAAGGGATGCGGAAACAGTAAGTACAAGACCATC------------------GGAATAA-GGAAATCA--------G-----AT-CAAAACGATT--------GA-------------ATACTAATCAAA-TAAAC----ATTTT-A---ACCTTAGACTGCCAGTGCTCAGCCGGCAAGTGCGGAGGAAATTGCGCCGGAAACAGC
droFic1	scf7180000453930:455954-456121 +		TCAA-AA------ACG----AACAAAC---CATCAAGATGCCTTGCAAGGGATGCGGAAACAGTAAGTACAAATACTCC------------------TAAACGG-A--------------------GTTAAG-------TGAATAGGAACATA----------A-----GCTAAA-TAAAC----CTTTT-A---TCTTTAGACTGCCAGTGCTCAGCCGGAAAGTGCGGAGGCAACTGCGCCGGAAACAGC
droKik1	scf7180000300058:25107-25270 -		AAAC-CAA------CCA---CAACAGC--CACCAAAGATGCCTTGCAAGGGATGCGGAAATAGTAAGTAAAA-------------------------------A-GGAAATTT--------------GTAAAATAAAATA--------TA-------------ATGCTAATGCAA-AGCAT----CCATT-T---TTCACAGACTGCCAGTGTCAGGCCGGCAAATGCGGCGGAAACTGCGCCGGAAATAGC
droAna3	scaffold_12911:2695004-2695171 +		TCAA-CCACC--A-CCAAC-CGAAACT---CTTAAAGATGCCTTGCAAGGGATGCGGAAACAGTAAGTTAATC--CTTA------------------GAAA----------------------C------AAAACAAGTA--------AA-------------ATGCTAATTAAA-TCAAT----CCTCT-AT-CCATATAGACTGCCAATGTTCGGCCGGCAAGTGCGGAGGAAGCTGCTCCGGAAATAGC
droBip1	scf7180000396714:411338-411510 -		TCAA-CCACC--A-CCAAA-CAAAAAA---CTACAAGATGCCTTGCAAGGGATGCGGAAACAGTAAGTTATAT----CC-----------------------AG-GAAGATCA--------------AAGAAGTAAAGAA--------AA-------------GTACTAAA-GAA-TCTAT----TCTCT-AT-CCATCCAGACTGCCAATGTTCGGCCGGCAAGTGCGGAGGAAGCTGCTCCGGAAATAGC
dp5	2:15514576-15514739 -		TCAA-ATTAA--AAA-A---AAAAAAC---CAACAAGATGCCTTGCAAAGGATGCGGAAACAGTGAGTACAAA-------------------------------------ATTCT-----ACAC------TATTAAAACT--------TA-------------ATTCTAATAATA-CGAAT----TCTTC-A---CTTACAGACTGCCAGTGCACATCGGGCCAGTGCGGAAGTACCTGTGCCGGTAACACC
droPer2	scaffold_0:4898525-4898688 +		TCAA-ATTTA--AAA-A---AAAAAAC---CAACAAGATGCCTTGCAAAGGATGCGGAAACAGTGAGTAAAAA-------------------------------------ATTCT-----ACAC------TATTAAAACT--------TA-------------ATTCTAATAATT-CGAAT----TCTTC-A---CTTACAGACTGCCAGTGCACATCGGGCCAGTGCGGAAGTACCTGTGCCGGTAACACC
droWil2	scf2_1100000004921:2537866-2538034 +		CAAA-TCATCCAA-CTATCCAAAAGTT---CAACAAGATGCCATGCAAAGGATGCGGAAACAGTAAGTGTTG-------------------------------G-GAAT-AATACATACTAAGT------AACTAAAACT---------A-------------ACTCTA---------ATC----TTTTA-T---TTTACAGACTGCCAATGCACAGCCGGCAAATGCGGTGGAAACTGTGCAGGAAATCAG
droVir3	scaffold_13047:10458007-10458170 +		TAAA-TAA-----AAAA---ATATAA----ACTAAAGATGCCTTGCAAAGGATGCGGAAATAGTGAGTGAAGT--------------------------------------TTAT-----AAAATAGTTCAATTATTGGA--------TT-------------ATATTAAT-GAG-TGAAT----TC-CT-G---CTTATAGACTGCCAGTGCACTTCCGGCAAATGCGGCGGCAACTGCGCCGGAAACCAG
droMoj3	scaffold_6540:28590828-28591018 -		TAAA-CAG-----AGAG---ATATAAACAAACAGAAAATGGGTTGCAAAGCGTGTGAGACCAGTGAGTACATACATACATACATACATACATATAAATAAACT--------AT-------------GTCGGA-------TAAGTATTACAATA---------------AACATAA-CGGTA----TCGTC-C---CCCACAGACTGCCAGTGCTCGGCCATCAAGTGCGGCGACAGCTGCCCCTGCAGCCAG
droGri2	scaffold_14624:179912-180071 -		TCAA-TAA-----TCCA---AC-ATAA---ACACATAATGGTTTGCAAGGCTTGTGGAACCAGTGAGTATAGCAGAA---------------------------------GCTAC-----CTGC------TTTTATAACG--------CA---TTTTAAACTCGTAT--------------------TCC-C---CGAATAGATTGCCAGTGTTCGGCTACCAAATGCGGCGACAACTGCGCCTGCAGTCAG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

TAAA-TAA-----ACCA---AAAAAAT---CAACAAGATGCCTTGCAAGGGATGTGGAAACAGTGAGTACCAGTCACCC------------------CAAATGG-GACAACTT--------------ATATTTTATAAAG--------TT-------------ATACTAATAGAA-TGAAC----TCTCC-A---CCTCTAGACTGCCAGTGCTCAGCCGGAAAGTGCGGAGGTAACTGCGCCGGAAACAGC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.....................................................................................................................................................................ACTAATAGAA-TGAAC----TCTCC-A---CCTCTAG..................................................	28	1	4.00	4	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................AAAAT---CAACAAGATGCCTTGCAAGGGAT.......................................................................................................................................................................................................	28	1	2.00	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................TCTAGACTGCCAGTGCTC.....................................	18	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................AGTGCTCAGCCGGAAAGTGCGGA.....................	23	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................CTCC-A---CCTCTAGACTGCCAGTGCTC.....................................	25	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................GCCGGAAAGTGCGGAGGTAACTGCGCC.........	27	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................GCCGGAAAGTGCGGAGGTAA................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................TGCCAGTGCTCAGCCGGAAAGTGCGGAGG...................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................CTCTAGACTGCCAGTGCTC.....................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................AAGATGCCTTGCAAGGGATGTGGA..................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.....TAA-----ACCA---AAAAAAT---CAACAAGAT.....................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................GTGCGGAGGTAACTGCGCCGGAAACA..	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................CAACAAGATGCCTTGCAAGGGATGTG....................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................TAGACTGCCAGTGCTCAGCCGGA..............................	23	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................TGCGGAGGTAACTGCGCCGGA......	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................CAACAAGATGCCTTGCAAGGGATGT.....................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................ATGCCTTGCAAGGGATGTGGA..................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................AACTGCGCCGGAAACA..	16	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................A-TGAAC----TCTCC-A---CCTCTAGAC................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................CAGCCGGAAAGTGCGGAGGTAACTGCGC..........	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................TGCAAGGGATGTGGAAACA..............................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
....................................GATGCCTTGCAAGGGATGTGGA..................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

TAAA-TAA-----ACCA---AAAAATA---CAACAATATGCCTTGCAAGGGATGTGGAAACAGTGAGTACAAATCACCC------------------CAAATGG-GACAACTT--------------ATAGTTTATAAAG--------TT-------------ATACTAATAGAA-TGAAC----TCTCC-A---CCTCTAGACTGCCAGTGCTCAGCCGGAAAGTGCGGAGGTAACTGCGCCGGAAACAGC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
........................................................................................................................................................................................................AGACTGCCAGTGCTCAGC..................................	18	1	1.00	1	0	0	0	1
.................................................................................................................................................................................................................GTGCTCAGCCGGAAAGTGCGGAG....................	23	1	1.00	1	0	1	0	0
...................................ATATGCCTTGCAAGGGATGTGG...................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0
..............................................AAGGGATGTGGAAACAAC............................................................................................................................................................................................	18	8	0.13	1	0	0	1	0

dm3

TAAA-TAAAC--AAA-A---AACAAAT---CAACAAGATGCCTTGCAAGGGATGTGGAAACAGTGAGTACCAGTCACCC------------------CAAGTGG-GAAAACTT--------------ATATTTTATAAAG--------TA-------------ATACTAATAGAA-TGAAC----TCTCC-ACCTCTACTAGACTGCCAGTGCTCAGCCGGAAAGTGCGGAGGTAACTGCGCCGGAAACAGC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..................................AAGATGCCTTGCAAGGGATGTGGAAACA..............................................................................................................................................................................................	28	1	11.00	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	2	0	0	0	0	1	0	0	1	0	1	0	0	0	0	0	0
............................................GCAAGGGATGTGGAAACA..............................................................................................................................................................................................	18	1	10.00	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	2	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................TGCCAGTGCTCAGCCGGAAAGTGCGGA.....................	27	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	2	0	0	0	0	0
.................................................................................................................................................................................................................GTGCTCAGCCGGAAAGTGC........................	19	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	2	1	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................AGCCGGAAAGTGCGGAGG...................	18	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................ACAAGATGCCTTGCAAGGGATG......................................................................................................................................................................................................	22	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
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...............................AACAAGATGCCTTGCAAGGGATGT.....................................................................................................................................................................................................	24	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
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.........................AT---CAACAAGATGCCTTGCAAGGGAT.......................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
..............................................AAGGGATGTGGAAACAGT............................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................GCCGGAAAGTGCGGAGGTAACTGCGCC.........	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.........................................CTTGCAAGGGATGTGGAAACAAC............................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
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.................................................................................................................................................................................................................GTGCTCAGCCGGAAAGTGCG.......................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
...............................AACAAGATGCCTTGCAAGGG.........................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................CCGGAAAGTGCGGAGGTAACTGC............	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

TAAA-CCA-----ACCA---GAAAAAG---CAACAAGATGCCTTGCAAGGGATGTGGAAACAGTAAGTACCAGTCACCC------------------TAAATGG-GTAAACTT--------------ATATTTCATAAAG--------TT-------ATACTTGTACTAATCGAA-TGAAC----TCTCC-A---CCTTTAGACTGCCAGTGCTCAGCCGGAAAGTGCGGAAGTAACTGCGCCGGAAACAGC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
....................................GATGCCTTGCAAGGGATGTGGA..................................................................................................................................................................................................	22	1	3.00	3	0	0	0	1	2	0	0
...................................................................................................................................................................................................................GCTCAGCCGGAAAGTGCGGAA....................	21	1	2.00	2	0	0	0	0	2	0	0
..........................G---CAACAAGATGCCTTGCAAGGGATGTG....................................................................................................................................................................................................	27	1	2.00	2	0	0	0	1	1	0	0
....................................................................................................................................................................................................................................GGAAGTAACTGCGCCGGAA.....	19	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................GCGGAAGTAACTGCGCCGGAAA....	22	1	1.00	1	0	1	0	0	0	0	0
........................................................................................................................................................................................................................................GTAACTGCGCCGGAAACAGC	20	1	1.00	1	0	0	0	0	1	0	0
........................AAG---CAACAAGATGCCTTGCAAGGGAT.......................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
................A---GAAAAAG---CAACAAGATGCCTTGCAAG...........................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0
.............ACCA---GAAAAAG---CAACAAGATGCC..................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0
....................................GATGCCTTGCAAGGGATGTGGAAACAG.............................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................TGCGGAAGTAACTGCGCCGGA......	21	1	1.00	1	0	1	0	0	0	0	0
................................................................................................................................................................................................................................GTGCGGAAGTAACTGCGCCGGAAAC...	25	1	1.00	1	0	1	0	0	0	0	0
.........................AG---CAACAAGATGCCTTGCAAGGGATGTG....................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0	0
..........................G---CAACAAGATGCCTTGCAAGGGATGTGGA..................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	1	0	0
............................................GCAAGGGATGTGGAAACA..............................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................................................................................................................................GCTCAGCCGGAAAGTGCGGAAGTAACC..............	27	1	1.00	1	0	1	0	0	0	0	0
...................................AGATGCCTTGCAAGGGATGTG....................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0
......CA-----ACCA---GAAAAAG---CAACAAGAT.....................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0
...............................AACAAGATGCCTTGCAAGGGATGT.....................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
.......A-----ACCA---GAAAAAG---CAACAAGAT.....................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0
..................................AAGATGCCTTGCAAGGGAT.......................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
.......A-----ACCA---GAAAAAG---CAACAAGATGC...................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
................................ACAAGATGCCTTGCAAGGGATGTGGA..................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
............................................................................................................................................................................................................TGCCAGTGCTCAGCCGGAAAGT..........................	22	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................GGAAGTAACTGCGCCGGAAACAGC	24	1	1.00	1	1	0	0	0	0	0	0
....................................GATGCCTTGCAAGGGATGTGGAAAC...............................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0
...........................................................................................................................................................................................................CTGCCAGTGCTCAGCCGG...............................	18	1	1.00	1	0	0	0	0	0	1	0
.......................................GCCTTGCAAGGGATGTGGAAACAACT...........................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
.................................CAAGATGCCTTGCAAGGGATGTGG...................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
.................................................................................................................................................................................................................GTGCTCAGCCGGAAAGTGCGGAA....................	23	1	1.00	1	1	0	0	0	0	0	0
........................................CCTTGCAAGGGATGTGGA..................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
........................................................................................................................................................................................................................GCCGGAAAGTGCGGAAGT..................	18	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................................................................................................................TGCCAGTGCTCAGCCGGAAAGTGC........................	24	1	1.00	1	0	0	0	0	0	1	0
.......................................GCCTTGCAAGGGATGTGG...................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................................GTGCTCAGCCGGAAAGTGCGGA.....................	22	1	1.00	1	0	0	0	1	0	0	0
....................................GATGCCTTGCAAGGGATGTGGAAACA..............................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0
..............................................................................................................................................................................................................................AAGTGCGGAAGTAACTGC............	18	1	1.00	1	0	0	0	0	0	1	0
....................................GATGCCTTGCAAGGGATGTGGAA.................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0
...............................AACAAGATGCCTTGCAAGGGA........................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
..................................AAGATGCCTTGCAAGGGATGTGGAAACA..............................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0	0
.......................................GCCTTGCAAGGGATGTGGAAAC...............................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
...............................AACAAGATGCCTTGCAAGGGATGTGGA..................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................AGTAACTGCGCCGGAAACAGC	21	1	1.00	1	0	0	0	1	0	0	0
..AA-CCA-----ACCA---GAAAAAG---CAACA.........................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0
...............................AACAAGATGCCTTGCAAGG..........................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0
..........................................................................................................................................................................................................ACTGCCAGTGCTCAGCCGG...............................	19	1	1.00	1	1	0	0	0	0	0	0

droYak3

CAAG-CAA-----ACC----AAACAAC---CAACAAGATGCCTTGCAAGGGATGTGGAAACAGTAAGTACCAGTCACCC------------------TAAATGG-GGAAACTT--------------ATATATTATAAAG--------TT-------------ATACTAATATAA-TGAAA----TCTCC-A---CCTTCAGACTGTCAGTGCTCAGCCGGAAAGTGCGGCGGTAACTGCGCCGGAAACAGC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.................................................................................................................................................................................................................GTGCTCAGCCGGAAAGTGCGGC.....................	22	1	5.00	5	0	1	0	0	0	0	4	0	0	0	0
................................................................................................................................................................................................................AGTGCTCAGCCGGAAAGTGCGGC.....................	23	1	3.00	3	0	0	0	0	0	0	3	0	0	0	0
..................................AAGATGCCTTGCAAGGGATGTGGAAACA..............................................................................................................................................................................................	28	1	3.00	3	0	0	2	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................GTCAGTGCTCAGCCGGAAAGTGCGGC.....................	26	1	2.00	2	0	0	1	0	0	0	1	0	0	0	0
....................................GATGCCTTGCAAGGGATGTGGA..................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.................................CAAGATGCCTTGCAAGGGATGTGGAAAC...............................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...............................AACAAGATGCCTTGCAAGGGATGT.....................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................AACAAGATGCCTTGCAAGGGATGTGG...................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................TGTCAGTGCTCAGCCGGA..............................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................GCAAGGGATGTGGAAACA..............................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................TGCCTTGCAAGGGATGTGGA..................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................ACAAGATGCCTTGCAAGGGA........................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................C---CAACAAGATGCCTTGCAAGGGATGTGG...................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................AAGATGCCTTGCAAGGGATGTGGAAAC...............................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................CAAGATGCCTTGCAAGGGATGTGGA..................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................GTGCTCAGCCGGAAAGTGCGGCGGT..................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................GCCTTGCAAGGGATGTGGAAACA..............................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................AGTGCTCAGCCGGAAAGTGCG.......................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................AAC---CAACAAGATGCCTTGCAAGGGATGT.....................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................AGTGCTCAGCCGGAAAGTGC........................	20	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
..................................AAGATGCCTTGCAAGGGATGTGGA..................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................CAGTGCTCAGCCGGAAAGTGCGGC.....................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................GGAAAGTGCGGCGGTAACT..............	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................GTCAGTGCTCAGCCGGAAA............................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................CTGTCAGTGCTCAGCCGGAA.............................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.AAG-CAA-----ACC----AAACAAC---CAAC..........................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................CAAC---CAACAAGATGCCTTGCA.............................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................ACAAGATGCCTTGCAAGGGATGTGGA..................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................CAAGATGCCTTGCAAGGGATGTGG...................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................AGATGCCTTGCAAGGGATGTGGA..................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.......................................GCCTTGCAAGGGATGTGGAAAC...............................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................TAAATGG-GGAAACTT--------------ATATATTAT....................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................AAGATGCCTTGCAAGGGATGTGG...................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................GCCTTGCAAGGGATGTGG...................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................GCGGTAACTGCGCCGGAAAC...	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.......................CAAC---CAACAAGATGCCTTGCAAGGGATG......................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................AAAGTGCGGCGGTAACTGC............	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................TGCAAGGGATGTGGAAACA..............................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................AGTGCTCAGCCGGAAAGTGCGGCGGTAAC...............	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................AAGATGCCTTGCAAGGGATGTGGAAA................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................TGCAAGGGATGTGGAAACAACT...........................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................CAACAAGATGCCTTGCAAGGGATGTG....................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................TCAGCCGGAAAGTGCGGCGGTAACTGC............	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

TCAA-CAA-----ACC----AAAAAAC---CAACAAGATGCCTTGCAAGGGATGCGGAAACAGTAAGTACAAGACGAAA------------------GAAGTGG-ATAAATTA--------------ATCTATTAAAATA--------GAT------GTG-TAATATTAATAAAAATAAAC----TT-TTAA-----TTTAGACTGCCAGTGCTCAGCCGGAAAGTGCGGAGGAAACTGCGCCGGAAATAGC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CTAA-CCA------CC----ACAAAAC---CAACAAGATGCCTTGCAAGGGATGCGGAAACAGTAAGTACCAGACCTCC------------------TAACTAGAGGAAATCG--------------ATCTATTA-AAGG--------CA-------------ATACTAAAGGAA-A-ACC----CTTCT-A---CCTTTAGACTGCCAGTGCTCAGCCGGAAAGTGCGGAGGAAACTGCGCCGGAAACAGC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CCAA-CAA-----ACC----AAAAAAC---CAACAAGATGCCTTGCAAGGGATGCGGAAACAGTAAGTACAAATCCTCC------------------TG---GA-GGAAATTG--------------ATCTATTAAAAGG--------TG-------------ATTCTTATAAAT-TAAACCCCTTCTTC-----TCCTTAGACTGTCAGTGCTCAGCCGGAAAGTGCGGAGGTAACTGCGCCGGAAACAGC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

ACAAGCAA-----ACC----AAAAAAC---CAACAGGATGCCTTGCAAGGGATGCGGAAACAGTAAGTAGCAGTCCACC------------------GGAATGG-GGAAATCA--------------AGCTAATATAATT--------GA-------------ATACTAATAAAA-TGAAC----CCTTT-A---ACTCTAGACTGCCAGTGCTCAGCCGGAAAGTGCGGAGGAAACTGCGCCGGAAACAGC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TCCAACAA-----ACC----ACATAAC---CAACAAGATGCCTTGCAAGGGATGCGGAAACAGTAAGTACAAGACCATC------------------GGAATAA-GGAAATCA--------G-----AT-CAAAACGATT--------GA-------------ATACTAATCAAA-TAAAC----ATTTT-A---ACCTTAGACTGCCAGTGCTCAGCCGGCAAGTGCGGAGGAAATTGCGCCGGAAACAGC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TCAA-AA------ACG----AACAAAC---CATCAAGATGCCTTGCAAGGGATGCGGAAACAGTAAGTACAAATACTCC------------------TAAACGG-A--------------------GTTAAG-------TGAATAGGAACATA----------A-----GCTAAA-TAAAC----CTTTT-A---TCTTTAGACTGCCAGTGCTCAGCCGGAAAGTGCGGAGGCAACTGCGCCGGAAACAGC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AAAC-CAA------CCA---CAACAGC--CACCAAAGATGCCTTGCAAGGGATGCGGAAATAGTAAGTAAAA-------------------------------A-GGAAATTT--------------GTAAAATAAAATA--------TA-------------ATGCTAATGCAA-AGCAT----CCATT-T---TTCACAGACTGCCAGTGTCAGGCCGGCAAATGCGGCGGAAACTGCGCCGGAAATAGC	Size	Hit Count	Total Norm	Total
No Reads

droAna3

TCAA-CCACC--A-CCAAC-CGAAACT---CTTAAAGATGCCTTGCAAGGGATGCGGAAACAGTAAGTTAATC--CTTA------------------GAAA----------------------C------AAAACAAGTA--------AA-------------ATGCTAATTAAA-TCAAT----CCTCT-AT-CCATATAGACTGCCAATGTTCGGCCGGCAAGTGCGGAGGAAGCTGCTCCGGAAATAGC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..............................CTTAAAGATGCCTTGCAAGGGATGC.....................................................................................................................................................................................................	25	1	4.00	4	0	1	0	0	3	0
.............................................................................................................................................................................................................................CAAGTGCGGAGGAAGCTGCTCC.........	22	1	3.00	3	0	0	1	0	2	0
.......................................GCCTTGCAAGGGATGCGGA..................................................................................................................................................................................................	19	1	2.00	2	1	0	1	0	0	0
............................................................................................................................................................................................................................GCAAGTGCGGAGGAAGCTGCTCCG........	24	1	1.00	1	0	0	0	0	1	0
........................ACT---CTTAAAGATGCCTTGC..............................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0
...................................................................................................................................................................................................................GTTCGGCCGGCAAGTGCGGAG....................	21	1	1.00	1	0	0	1	0	0	0
..............................CTTAAAGATGCCTTGCAAGGGAT.......................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0
.......................................GCCTTGCAAGGGATGCGGAAAC...............................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................CTGCCAATGTTCGGCCGGCAAGTGCGGA.....................	28	1	1.00	1	0	1	0	0	0	0
........................ACT---CTTAAAGATGCCTTGCAAGGG.........................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
.........................CT---CTTAAAGATGCCTTGCAA............................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................GTTCGGCCGGCAAGTGCGGA.....................	20	1	1.00	1	0	0	0	0	1	0
............................................................................................................................................................................................................................GCAAGTGCGGAGGAAGCTGCTCCGG.......	25	1	1.00	1	0	0	0	0	1	0
.....................................ATGCCTTGCAAGGGATGCGGA..................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
....................................GATGCCTTGCAAGGGATGCGGAAACA..............................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0
.................................AAAGATGCCTTGCAAGGGATGCGG...................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
................AAC-CGAAACT---CTTAAAGATGCCTTGCA.............................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
................................TAAAGATGCCTTGCAAGGG.........................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................AAGTGCGGAGGAAGCTGCTCCG........	22	1	1.00	1	0	0	0	0	1	0
............................................................................................................................................................................................................TGCCAATGTTCGGCCGGCAAGTGCGGA.....................	27	1	1.00	1	0	0	0	0	1	0
............................................................................................................................................................................................................................GCAAGTGCGGAGGAAGCTGCTC..........	22	1	1.00	1	0	1	0	0	0	0
...............................TTAAAGATGCCTTGCAAGGGATGC.....................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0
...................................................................................................................................................................................................................GTTCGGCCGGCAAGTGCGGAGGA..................	23	1	1.00	1	0	0	0	0	1	0
................................................................................................................................................................................................................................GTGCGGAGGAAGCTGCTCC.........	19	1	1.00	1	0	0	0	0	1	0
..........................................TTGCAAGGGATGCGGAAAC...............................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................GGCAAGTGCGGAGGAAGCTGCTCCGG.......	26	1	1.00	1	0	0	0	0	1	0
............A-CCAAC-CGAAACT---CTTAAAGAT.....................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
.................................AAAGATGCCTTGCAAGGGAT.......................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
.CAA-CCACC--A-CCAAC-CGAA....................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
................................TAAAGATGCCTTGCAAGGGATGC.....................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0
...................................AGATGCCTTGCAAGGGATGCGGA..................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................GGCAAGTGCGGAGGAAGCC..............	19	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................ATGTTCGGCCGGCAAGTGC........................	19	1	1.00	1	0	1	0	0	0	0
................................TAAAGATGCCTTGCAAGGGATGCGGAAAC...............................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	1	0
.......................AACT---CTTAAAGATGCCTTGC..............................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0

droBip1

TCAA-CCACC--A-CCAAA-CAAAAAA---CTACAAGATGCCTTGCAAGGGATGCGGAAACAGTAAGTTATAT----CC-----------------------AG-GAAGATCA--------------AAGAAGTAAAGAA--------AA-------------GTACTAAA-GAA-TCTAT----TCTCT-AT-CCATCCAGACTGCCAATGTTCGGCCGGCAAGTGCGGAGGAAGCTGCTCCGGAAATAGC	Size	Hit Count	Total Norm	Total
No Reads

dp5

TCAA-ATTAA--AAA-A---AAAAAAC---CAACAAGATGCCTTGCAAAGGATGCGGAAACAGTGAGTACAAA-------------------------------------ATTCT-----ACAC------TATTAAAACT--------TA-------------ATTCTAATAATA-CGAAT----TCTTC-A---CTTACAGACTGCCAGTGCACATCGGGCCAGTGCGGAAGTACCTGTGCCGGTAACACC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
................................................................................................................................................................................................................................GTGCGGAAGTACCTGTGCC.........	19	1	5.00	5	0	5	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................ATCGGGCCAGTGCGGAAGTACCTGTGCC.........	28	1	4.00	4	0	4	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................GGAAGTACCTGTGCCGGT......	18	1	3.00	3	0	3	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................GTGCGGAAGTACCTGTGCCGGT......	22	1	3.00	3	0	3	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................CAGTGCGGAAGTACCTGTGCC.........	21	1	2.00	2	0	1	1	0	0	0	0	0	0	0
..................................AAGATGCCTTGCAAAGGATGCGGA..................................................................................................................................................................................................	24	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..............................CAACAAGATGCCTTGCAAAGG.........................................................................................................................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0
....................................GATGCCTTGCAAAGGATGCGG...................................................................................................................................................................................................	21	1	2.00	2	0	1	0	0	0	0	1	0	0	0
...............................AACAAGATGCCTTGCAAAGGATGCGGA..................................................................................................................................................................................................	27	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................CAGTGCGGAAGTACCTGTGCCGGTA.....	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................AAAC---CAACAAGATGCCTTGC..............................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................ATCGGGCCAGTGCGGAAGT..................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................AGTGCGGAAGTACCTGTGCCGGT......	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................AGATGCCTTGCAAAGGATG......................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................AAAAAC---CAACAAGATGCCTTGCA.............................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................GCCAGTGCGGAAGTACCT..............	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................TGCCTTGCAAAGGATGCGGAAAC...............................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................AGTGCGGAAGTACCTGTGCCG........	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................GGCCAGTGCGGAAGTACCTGT............	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................A---CTTACAGACTGCCAGTGCACA....................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................AGATGCCTTGCAAAGGATGCGG...................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................GGAAGTACCTGTGCCGGTAACACC	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................TGCCTTGCAAAGGATGCGGA..................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................CATCGGGCCAGTGCGGAAGTACCT..............	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................GCCTTGCAAAGGATGCGGAAACAAC............................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................AAAAAAC---CAACAAGATGCCTT................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................CTGCCAGTGCACATCGGGCCAGTGCG.......................	26	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..............................CAACAAGATGCCTTGCAAAGGATGC.....................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..........................C---CAACAAGATGCCTTGCAAAGG.........................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................A---AAAAAAC---CAACAAGATGCCTTGCAAAG..........................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................GGGCCAGTGCGGAAGTACC...............	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................AGTGCGGAAGTACCTGTGCC.........	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................GCGGAAGTACCTGTGCCGGT......	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................AGATGCCTTGCAAAGGATGCGGA..................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................GCCAGTGCGGAAGTACCTGTGCC.........	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................GTGCGGAAGTACCTGTGCCG........	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................CTGCCAGTGCACATCGGGCCAGTGC........................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................CAACAAGATGCCTTGCAAAGGATGCGG...................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

TCAA-ATTTA--AAA-A---AAAAAAC---CAACAAGATGCCTTGCAAAGGATGCGGAAACAGTGAGTAAAAA-------------------------------------ATTCT-----ACAC------TATTAAAACT--------TA-------------ATTCTAATAATT-CGAAT----TCTTC-A---CTTACAGACTGCCAGTGCACATCGGGCCAGTGCGGAAGTACCTGTGCCGGTAACACC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
................................................................................................................................................................................................................................GTGCGGAAGTACCTGTGCC.........	19	1	7.00	7	7	0	0	0	0	0
..................................................................................................................................................................................................................................GCGGAAGTACCTGTGCCG........	18	1	3.00	3	3	0	0	0	0	0
..........................................................................................................................................................................................CTTC-A---CTTACAGACTGCC............................................	18	1	2.00	2	2	0	0	0	0	0
..........................................................................................................................................................................TAATT-CGAAT----TCTTC-A---CTTACA...................................................	22	1	2.00	2	0	2	0	0	0	0
.....................................ATGCCTTGCAAAGGATGCGGAAAC...............................................................................................................................................................................................	24	1	2.00	2	2	0	0	0	0	0
................................................................................................................................................................................................................AGTGCACATCGGGCCAGT..........................	18	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................CGAAT----TCTTC-A---CTTACAGACTGC.............................................	23	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................CTGCCAGTGCACATCGGGC..............................	19	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................AGTGCGGAAGTACCTGTGCA.........	20	1	1.00	1	0	0	1	0	0	0
............................................................................................................................................................................ATT-CGAAT----TCTTC-A---CTTACAG..................................................	21	1	1.00	1	0	1	0	0	0	0
......................AAAAC---CAACAAGATGCCTT................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0
......................................TGCCTTGCAAAGGATGCGGAAAC...............................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0
............................................................................................................................................................................................................TGCCAGTGCACATCGGGCCA............................	20	1	1.00	1	0	0	1	0	0	0
.................................................................................................................................................................................................................................TGCGGAAGTACCTGTGCC.........	18	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................GGGCCAGTGCGGAAGTACCTGT............	22	1	1.00	1	0	0	0	0	0	1
..............A-A---AAAAAAC---CAACAAGATGC...................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................AATT-CGAAT----TCTTC-A---CTTACA...................................................	21	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................ACATCGGGCCAGTGCGGAAGT..................	21	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................CAGTGCGGAAGTACCTGTGCC.........	21	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................................................CATCGGGCCAGTGCGGAAGTAC................	22	1	1.00	1	1	0	0	0	0	0

droWil2

CAAA-TCATCCAA-CTATCCAAAAGTT---CAACAAGATGCCATGCAAAGGATGCGGAAACAGTAAGTGTTG-------------------------------G-GAAT-AATACATACTAAGT------AACTAAAACT---------A-------------ACTCTA---------ATC----TTTTA-T---TTTACAGACTGCCAATGCACAGCCGGCAAATGCGGTGGAAACTGTGCAGGAAATCAG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..............................................................................................................................................................................................................................AAATGCGGTGGAAACTGTGC..........	20	1	10.00	10	0	2	4	4	0
.......................................................................................................................................................................................................................AGCCGGCAAATGCGGTGGAAACTGTGC..........	27	1	6.00	6	0	0	2	4	0
...........................................................................................................................................................................................................................GGCAAATGCGGTGGAAACTGT............	21	1	5.00	5	0	0	5	0	0
...................................................ATGCGGAAACAGTAAGTGTTG-------------------------------G-GA.................................................................................................................................................	24	1	2.00	2	0	0	2	0	0
...............................AACAAGATGCCATGCAAAGGATGCGG...................................................................................................................................................................................................	26	1	2.00	2	0	1	0	1	0
....................................GATGCCATGCAAAGGATGCGGAAA................................................................................................................................................................................................	24	1	2.00	2	0	0	2	0	0
.........................TT---CAACAAGATGCCATGCAAAG..........................................................................................................................................................................................................	22	1	2.00	2	0	1	0	1	0
...............................................................................................................................................................................................................................AATGCGGTGGAAACTGTGC..........	19	1	2.00	2	0	0	1	1	0
..............................................................................................................................................................................................................................AAATGCGGTGGAAACTGTGCAGGAA.....	25	1	2.00	2	0	0	2	0	0
........................GTT---CAACAAGATGCCATGCAAAG..........................................................................................................................................................................................................	23	1	2.00	2	0	1	0	1	0
........................GTT---CAACAAGATGCCATGCAAAGG.........................................................................................................................................................................................................	24	1	2.00	2	0	1	0	1	0
..............................................................................................................................................................................................................................AAATGCGGTGGAAACTGTG...........	19	1	2.00	2	0	0	2	0	0
.................................CAAGATGCCATGCAAAGG.........................................................................................................................................................................................................	18	1	2.00	2	0	1	0	1	0
..................................AAGATGCCATGCAAAGGATGC.....................................................................................................................................................................................................	21	1	2.00	2	0	0	1	1	0
...............................AACAAGATGCCATGCAAAGGATG......................................................................................................................................................................................................	23	1	2.00	2	0	0	2	0	0
.............................................................................................................................................................................................................................CAAATGCGGTGGAAACTGTGC..........	21	1	2.00	2	0	0	1	1	0
...........................................................................................................................................................................................................................GGCAAATGCGGTGGAAACTGTGC..........	23	1	2.00	2	0	0	2	0	0
.....................................................................................................................................................................................................................ACAGCCGGCAAATGCGGTGGAAACTGT............	27	1	2.00	2	0	0	2	0	0
.............................................................................................................................................................................................................................CAAATGCGGTGGAAACTGT............	19	1	2.00	2	0	2	0	0	0
.......ATCCAA-CTATCCAAAAGTT---..............................................................................................................................................................................................................................	19	1	2.00	2	0	1	0	1	0
...................................................ATGCGGAAACAGTAAGTGTTG-------------------------------.....................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
................................................................................................................................................................................................................AATGCACAGCCGGCAAATGC........................	20	1	1.00	1	0	1	0	0	0
...A-TCATCCAA-CTATCCAAAAGT..................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................................................................CGGCAAATGCGGTGGAAACTG.............	21	1	1.00	1	0	0	1	0	0
.......................................GCCATGCAAAGGATGCGGA..................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
.......................................GCCATGCAAAGGATGCGGAAAC...............................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
......................AAGTT---CAACAAGATGCCATGCAAAGGA........................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0
........................GTT---CAACAAGATGCCATGC..............................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0
..................................AAGATGCCATGCAAAGGA........................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
....................................GATGCCATGCAAAGGATGCGGAAACAAC............................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0
..........................T---CAACAAGATGCCATGCAAAGGATGC.....................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0
....................................................................................................................................................................................................................................GGTGGAAACTGTGCAGGAAATCAG	24	1	1.00	1	0	0	1	0	0
..............................CAACAAGATGCCATGCAAAGGATGCGGA..................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0
..........................................................................................................................................................................................................................CGGCAAATGCGGTGGAAACTGT............	22	1	1.00	1	0	0	1	0	0
..........................T---CAACAAGATGCCATGCAAAGGA........................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
................................ACAAGATGCCATGCAAAGGATGCGGA..................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0
.......................................................................................................................................................................................................................AGCCGGCAAATGCGGTGGAAACTGTGCA.........	28	1	1.00	1	0	0	1	0	0
.......................................GCCATGCAAAGGATGCGGAAACAGTAAGT........................................................................................................................................................................................	29	1	1.00	1	0	0	1	0	0
...............................AACAAGATGCCATGCAAAGGATGCG....................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
..............................CAACAAGATGCCATGCAAAGG.........................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
........................GTT---CAACAAGATGCCATGCAAAGGATGC.....................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0
....................................................................................................................................................................................................................................GGTGGAAACTGTGCAGGAA.....	19	1	1.00	1	0	1	0	0	0
.....................................................................................................................................................................................................................................GTGGAAACTGTGCAGGAAATC..	21	1	1.00	1	0	0	1	0	0
..........................T---CAACAAGATGCCATGCAAAGGATG......................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
....................................GATGCCATGCAAAGGATGCGG...................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
...................................................................................................................................................................................................................GCACAGCCGGCAAATGCGGT.....................	20	1	1.00	1	0	0	0	1	0
.................................CAAGATGCCATGCAAAGGATGCGGAAA................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0
.......................................................................................................................................................................................................................AGCCGGCAAATGCGGTGGAAACTGT............	25	1	1.00	1	0	0	1	0	0
................................................................................................................................................................................................................AATGCACAGCCGGCAAATGCGGT.....................	23	1	1.00	1	0	0	0	1	0
..........................................ATGCAAAGGATGCGGAAA................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0
....................................................................................................................................................................................................................CACAGCCGGCAAATGCGGT.....................	19	1	1.00	1	0	0	0	1	0
..AA-TCATCCAA-CTATCCAAAAGTT---..............................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
............................................................................................................................................................................................................................GCAAATGCGGTGGAAACTGTGCA.........	23	1	1.00	1	0	0	1	0	0
..........................................................................................................................................................................................................................CGGCAAATGCGGTGGAAACTGTGC..........	24	1	1.00	1	0	0	1	0	0
..................................AAGATGCCATGCAAAGGATGCGGA..................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0
.......................AGTT---CAACAAGATGCCATGCAAAGGA........................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0
....................................GATGCCATGCAAAGGATGCGGAAAC...............................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0
....................................................................................................................................................................................................................................GGTGGAAACTGTGCAGGA......	18	1	1.00	1	0	0	1	0	0
..............................................................GTAAGTGTTG-------------------------------G-GAAT-AATACATA......................................................................................................................................	23	1	1.00	1	0	0	1	0	0
..............................................................................................................................................................................................................CCAATGCACAGCCGGCAAATGCGGT.....................	25	1	1.00	1	0	0	1	0	0
......................................TGCCATGCAAAGGATGCGGA..................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
...................CAAAAGTT---CAACAAGATGCCATGCAAA...........................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0
......................................TGCCATGCAAAGGATGCGG...................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
...........................................................................................................................................................................................................................GGCAAATGCGGTGGAAACTGTGCAG........	25	1	1.00	1	0	0	1	0	0
.......................AGTT---CAACAAGATGCCATGCA.............................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
..................................AAGATGCCATGCAAAGGAT.......................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................................................................CGGCAAATGCGGTGGAAACT..............	20	1	1.00	1	0	1	0	0	0
..............................CAACAAGATGCCATGCAAAGGA........................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
................................ACAAGATGCCATGCAAAGGATGCG....................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0
...........................................................................................................................................................................................................................GGCAAATGCGGTGGAAACTG.............	20	1	1.00	1	0	0	0	1	0
...........................................................................................................................................................................................................................GGCAAATGCGGTGGAAACTGTGCAGGA......	27	1	1.00	1	0	0	1	0	0
...........................................................................................................................................................................................................................GGCAAATGCGGTGGAAACTGTGCAGG.......	26	1	1.00	1	0	0	1	0	0
..........................T---CAACAAGATGCCATGCAAAGG.........................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0
..................................................GATGCGGAAACAGTAAGTGTTG-------------------------------G-GA.................................................................................................................................................	25	1	1.00	1	0	0	1	0	0
........................................................................................................................................................................................................................GCCGGCAAATGCGGTGGAAACTGTGT..........	26	1	1.00	1	0	0	0	1	0
.................................CAAGATGCCATGCAAAGGATGC.....................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
.....................................ATGCCATGCAAAGGATGCGGA..................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
...........................................................................................................................................................................................................................GGCAAATGCGGTGGAAACTGTG...........	22	1	1.00	1	0	0	1	0	0
...............................................................................................................................................................................................................................AATGCGGTGGAAACTGTG...........	18	1	1.00	1	0	1	0	0	0
......CATCCAA-CTATCCAAAAGTT---CAACAA........................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0
.AAA-TCATCCAA-CTATCCAAA.....................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0
...............................AACAAGATGCCATGCAAAGG.........................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0
.........................................................................................................................................................................................................................CCGGCAAATGCGGTGGAAACTGTGC..........	25	1	1.00	1	0	0	1	0	0
............................................................................................................................................................................................................................GCAAATGCGGTGGAAACTGTGC..........	22	1	1.00	1	0	1	0	0	0
................................................................................................................................................................................................................................ATGCGGTGGAAACTGTGC..........	18	1	1.00	1	0	0	0	1	0
..........................................ATGCAAAGGATGCGGAAACAACT...........................................................................................................................................................................................	23	2	0.50	1	0	1	0	0	0

droVir3

TAAA-TAA-----AAAA---ATATAA----ACTAAAGATGCCTTGCAAAGGATGCGGAAATAGTGAGTGAAGT--------------------------------------TTAT-----AAAATAGTTCAATTATTGGA--------TT-------------ATATTAAT-GAG-TGAAT----TC-CT-G---CTTATAGACTGCCAGTGCACTTCCGGCAAATGCGGCGGCAACTGCGCCGGAAACCAG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
................................................................................................................................................................................................................AGTGCACTTCCGGCAAATGCGGCGGC..................	26	1	4.00	4	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................ACTTCCGGCAAATGCGGCGGC..................	21	1	3.00	3	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..............................................................................................................................................................................................................................AAATGCGGCGGCAACTGCGC..........	20	1	3.00	3	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................CAGTGCACTTCCGGCAAATGCGGCGGC..................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0
.................................AAAGATGCCTTGCAAAGGATGCGGA..................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0
..............................................................................................................................................................................................................................AAATGCGGCGGCAACTGCGCC.........	21	1	2.00	2	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................CACTTCCGGCAAATGCGGCGGC..................	22	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.............................................................................................................................................................................................................................CAAATGCGGCGGCAACTGC............	19	1	2.00	2	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............AA---ATATAA----ACTAAAGATGCCT.................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................GGCAAATGCGGCGGCAACTGC............	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................ATGCCTTGCAAAGGATGCGGAAATAGTG...........................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
......................ATAA----ACTAAAGATGCCTTGCAAAGGAT.......................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................AAAGATGCCTTGCAAAGGATGCGGAAAT...............................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...............................................................................................................................................................................................................................AATGCGGCGGCAACTGCGC..........	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................TGCCTTGCAAAGGATGCGGAAAT...............................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................ATAA----ACTAAAGATGCCTTGC..............................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................GCAAATGCGGCGGCAACTGCGC..........	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................AA----ACTAAAGATGCCTTGCAAAGGATGC.....................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
................................................................................................................................................................................................................AGTGCACTTCCGGCAAATGCGGC.....................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................AA----ACTAAAGATGCCTTGCAAAGGATGCGG...................................................................................................................................................................................................	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................AAATGCGGCGGCAACTGCGCCGGA......	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................GCACTTCCGGCAAATGCGGCGGC..................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.....................................ATGCCTTGCAAAGGATGCG....................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................CTTCCGGCAAATGCGGCGGC..................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.......................................GCCTTGCAAAGGATGCGG...................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................TAA----ACTAAAGATGCCTTGC..............................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................CTTCCGGCAAATGCGGCGGCAACTGCGCC.........	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................GTGCACTTCCGGCAAATGCGGCGGC..................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................TGCACTTCCGGCAAATGCGGCGGC..................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................A----ACTAAAGATGCCTTGCAAAG..........................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................ATAA----ACTAAAGATGCCTTGCAAAGG.........................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................CAAAGGATGCGGAAATAGT............................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
....................................................................GAAGT--------------------------------------TTAT-----AAAATAGTTC..........................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................GATGCCTTGCAAAGGATGC.....................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................TAAAGATGCCTTGCAAAGGATGCGG...................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.......................................GCCTTGCAAAGGATGCGGA..................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................AGATGCCTTGCAAAGGATGCGGA..................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................AAAGATGCCTTGCAAAGGATGCGGAA.................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................GATGCCTTGCAAAGGATGCGGAA.................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................CACTTCCGGCAAATGCGGCGG...................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................AAAGATGCCTTGCAAAGGA........................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...............................................................................................................................................................................................................................AATGCGGCGGCAACTGCGCCGGA......	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0

droMoj3

TAAA-CAG-----AGAG---ATATAAACAAACAGAAAATGGGTTGCAAAGCGTGTGAGACCAGTGAGTACATACATACATACATACATACATATAAATAAACT--------AT-------------GTCGGA-------TAAGTATTACAATA---------------AACATAA-CGGTA----TCGTC-C---CCCACAGACTGCCAGTGCTCGGCCATCAAGTGCGGCGACAGCTGCCCCTGCAGCCAG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..............................................AAAGCGTGTGAGACCAGTGAGT........................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
...................................................................................................................................................................................................................GCTCGGCCATCAAGTGCGG......................	19	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................GGCGACAGCTGCCCCTGCAG....	20	1	1.00	1	1	0	0	0	0	0
........................AAACAAACAGAAAATGGGTTGCAAAGCGT.......................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
.....................................ATGGGTTGCAAAGCGTGTGAG..................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
.............................AACAGAAAATGGGTTGCAAAGCGTGTGA...................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
............................AAACAGAAAATGGGTTGCAAAGCGT.......................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
....................ATATAAACAAACAGAAAATGGG..................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.................................GAAAATGGGTTGCAAAGCG........................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................CGGCGACAGCTGCCCCTGCAGC...	22	1	1.00	1	1	0	0	0	0	0
......................................TGGGTTGCAAAGCGTGTGA...................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................CGGCCATCAAGTGCGGCGACAGCTG.............	25	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................GCGGCGACAGCTGCCCCTGCAGCCA.	25	1	1.00	1	1	0	0	0	0	0
....................................AATGGGTTGCAAAGCGTGTGAGAC................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
.AAA-CAG-----AGAG---ATATAAACA...............................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
.................................GAAAATGGGTTGCAAAGCGTGTGAGA.................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
......................................TGGGTTGCAAAGCGTGTGAGACCA..............................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.............................AACAGAAAATGGGTTGCAAA...........................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
................................................................................................ATAAACT--------AT-------------GTCGGA-------TAAGT............................................................................................................	20	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................................................................................................GGCGACAGCTGCCCCTGCAGCC..	22	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................GGCGACAGCTGCCCCTGCAGCCAG	24	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................ACTGCCAGTGCTCGGCCAT...............................	19	1	1.00	1	1	0	0	0	0	0
................................AGAAAATGGGTTGCAAAGCGTGTGA...................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
....................................AATGGGTTGCAAAGCGTGTGA...................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
...................................AAATGGGTTGCAAAGCGTGTGAGAC................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.............................AACAGAAAATGGGTTGCAAAGCGTGT.....................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.......................TAAACAAACAGAAAATGG...................................................................................................................................................................................................................	18	2	0.50	1	1	0	0	0	0	0

droGri2

TCAA-TAA-----TCCA---AC-ATAA---ACACATAATGGTTTGCAAGGCTTGTGGAACCAGTGAGTATAGCAGAA---------------------------------GCTAC-----CTGC------TTTTATAACG--------CA---TTTTAAACTCGTAT--------------------TCC-C---CGAATAGATTGCCAGTGTTCGGCTACCAAATGCGGCGACAACTGCGCCTGCAGTCAG	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.................................CATAATGGTTTGCAAGGCT........................................................................................................................................................................................................	19	1	2.00	2	1	1
...................................TAATGGTTTGCAAGGCTTGTGG...................................................................................................................................................................................................	22	1	1.00	1	0	1
................................ACATAATGGTTTGCAAGGCTTGTGGA..................................................................................................................................................................................................	26	1	1.00	1	1	0
.......................................GGTTTGCAAGGCTTGTGGAACC...............................................................................................................................................................................................	22	1	1.00	1	1	0
..................................ATAATGGTTTGCAAGGCTTGTGGAACCA..............................................................................................................................................................................................	28	1	1.00	1	1	0
........................................GTTTGCAAGGCTTGTGGAACC...............................................................................................................................................................................................	21	1	1.00	1	1	0

dsi_14096

3r:4946051-4946127 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-7.9	-7.7	-7.7