dsi_14063

CDS [x_3465094_3465112_+]; five_prime_UTR [x_3465054_3465093_+]; exon [x_3465054_3465112_+]; intron [x_3464514_3465053_+]

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## AGGATCAGTACTTTTTTGCTTTTATTGTCTCTTATTGAAAAAAAAAACATCAAAATTTACACATAATATATATGTGCATATTTTTTGTTAAATTAAAAGAAAGTTGAGTTTATGCAGCCCGGTCAATATCTCATACATATGTACATTCCTACAACGTAATGATTTTTAAAGCAAATTTAATATTTTTCTTCGATTTCAAGTGACGCGTAACGGATGTGAAGCGATCTCCGGGTTCCCACCATGACGGATA ************************************************(((((..((((((((.....))))))..))..)))))..(((((..((((((((((((((..(((.....(((((.(((..........((((......))))..))).)))))......)))))))))))...)))))).)))))....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M053 female body	M024 male body	M025 embryo	O001 Testis	SRR902009 testis	M023 head	SRR618934 dsim w501 ovaries	SRR902008 ovaries	SRR553485 Chicharo_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs
.........................................................................................................................................................................................................GACGCGTAACGGATGTGAAGC............................	21	0	1	5.00	5	2	2	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TGACGCGTAACGGATGTGAAGC............................	22	0	1	3.00	3	1	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................AATTGACGCGTAACGGAT...................................	18	1	1	2.00	2	1	1	0	0	0	0	0	0	0	0	0
...................................................................................................CGAGTTGAGTTTATGCAGCCCGGTCA.............................................................................................................................	26	2	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................CGGATGTGAAGCGATCTCC.....................	19	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
...................................................................................................................................................................................................TTAATTGACGCGTAACGGATGTGAAGC............................	27	2	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................ATGTGAAGCGATCTCCGGGG.................	20	1	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................GACGCGTAACGGATGTAAAGC............................	21	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................AAGCAAATTTAATATTTTTCT.............................................................	21	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
.............................TCTTATTGAAAAAAAAAA...........................................................................................................................................................................................................	18	0	2	1.00	2	0	0	0	2	0	0	0	0	0	0	0
................................................................................................................................................................................................................AACGGATGTGAAGCGATCTCC.....................	21	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................TTTTAATTGACGCGTAACGGATGTGA...............................	26	2	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................GGATGTGAAGCGATCTCCGGGTTCCCACC..........	29	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................ACGACTGACGCGTAACGGATGT.................................	22	3	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................GTAACGGATGTGAAGCGATCTCC.....................	23	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................GACGCGTAACGGATGTGAGGCGAT.........................	24	1	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................GATCTCCGGGTTCCCACCATGACGG...	25	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................TTTTAATTGACGCGTAACGGAT...................................	22	2	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................TTTAATTGACGCGTAACGGAT...................................	21	2	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................TGTTTAGCGTTCTCCGGGTT................	20	3	4	0.25	1	0	0	0	0	0	0	1	0	0	0	0
.......................ATTGTCTCTTATAAAAAATAAAA............................................................................................................................................................................................................	23	3	5	0.20	1	0	0	0	0	0	0	0	1	0	0	0
........................TTATCCCGTATTGAAAAAAA..............................................................................................................................................................................................................	20	3	19	0.05	1	0	0	0	0	0	0	0	0	1	0	0
............................................................................................................................................................................................................GCGTAGCGGATGTGGAG.............................	17	2	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1
......................................................................................................................................................................................................AGTGACCCGTATCGGA....................................	16	2	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
.......................................AAAAAAAAGATCAAAATTCA...............................................................................................................................................................................................	20	2	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................GCGTAACGGATGAGCA..............................	16	2	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0

TCCTAGTCATGAAAAAACGAAAATAACAGAGAATAACTTTTTTTTTTGTAGTTTTAAATGTGTATTATATATACACGTATAAAAAACAATTTAATTTTCTTTCAACTCAAATACGTCGGGCCAGTTATAGAGTATGTATACATGTAAGGATGTTGCATTACTAAAAATTTCGTTTAAATTATAAAAAGAAGCTAAAGTTCACTGCGCATTGCCTACACTTCGCTAGAGGCCCAAGGGTGGTACTGCCTAT ************************************************(((((..((((((((.....))))))..))..)))))..(((((..((((((((((((((..(((.....(((((.(((..........((((......))))..))).)))))......)))))))))))...)))))).)))))....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	M053 female body	SRR553485 Chicharo_3 day-old ovaries	GSM343915 embryo
.................................................................................................................................................................................................................................GATGCTCAGGGGTGGTACTGC....	21	3	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................TCGATAGAGGCCCAAG...............	16	1	2	0.50	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................CTCAAGGGTGGTAATGC....	17	2	9	0.44	4	1	0	2	0	1	0
.......................................................................................................................................GTTTACAAGTCAGGATGTTG...............................................................................................	20	3	6	0.17	1	0	0	0	1	0	0
.........................................................................................................................................................................................................................GGTCGATAGAGGCCCAAG...............	18	3	20	0.15	3	3	0	0	0	0	0
..................................................................................................................................................AGTATTTTGCATTACTAAA.....................................................................................	19	2	8	0.13	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................TCGATAGAGGCCCAAGC..............	17	2	11	0.09	1	0	0	1	0	0	0
..................................................................................................................................GGTATGTATACATGTAAGGT....................................................................................................	20	2	14	0.07	1	0	0	0	0	0	1
.............................................................................................................................................ATGTACGGATGTTGGA.............................................................................................	16	2	20	0.05	1	1	0	0	0	0	0

Species	Coordinate	ID	Alignment
droSim2	x:3464854-3465103 +	dsi_14063	AGGATCAGTACTT------TTTTGCTTT-------------TATT-GTCTCTTATTGAAAAAAAA--AA---CATCAAAATTTACACATAATA------TATATGTGC--ATA----TT-T-----TTTGTTA---AATTAAAAGAAAGT----TGAGTTTATGCAGCCCGG---TCAATATCTCATACATATGT----------ACATTCCTACAACGTAATGATTTTTA---AAGCAAA--------------TTTA------ATATTTTTCTTCGATTTCAAGTGACGCGTAACGGATGTGAAGCGATCTCC---GGGTTC----------------CCACCATGACGGATA
droSec2	scaffold_4:2940269-2940510 -		AGGATCAATACTT------TTTTGCTTT-------------TTTT-GTCTCTTATTGGAAAAAAA--AA---CAACAAAATTTACGCATAATA------TATATGTGC--ATA----TT-T-----TTCGTTA---AATTAAAAGAAAGT----TGAGTTTACGCATACCGG---TCAATATCTCATACA------------------TTCCTACAACGTAATGATTTTTA---AAGCAAA--------------TTTA------ATATTTTTCTTCGATTTCAAGTGACGCGTAACGGATGTGAAGCGATCTCC---GGGTTC----------------CCACCATGACGGATA
dm3	chrX:3766949-3767200 +		AGGATCAGTACTT------TTTTGCTTTT----ATTGTCTCTTTT-GTCTCTTATTGGAAAAAAATAAA---CA---AAATTTACACGTAATATACA--TATATGTGCATATA----TT-T-----TTCGTTA---AATTAAAAGAAAGT----TGAGTTTATGCATC---------------TTATACATATGC----------ACATTCCTACAACGTAATGATTTTTA---AAGTAAA--------------TTTA------ATATTTTTCTTCGATTTCAAGTGACGCGTAACGGATGTGAAGCGATCTCC---GGGTTC----------------CCAACATGACGGATA
droEre2	scaffold_4690:1150931-1151164 +		AGGAGTAT-------------ATGCTTTT-------------ATT-GTAT-----------------------------ATGTACATATAT-GTATGTATATATGTAT--ATT----TT-A-----TTTGTTA---AATAAAAAGAAAGC----TGAGTTTACGCAATCCGT---CCTACATATTATACACATGTACATATATGTACATTCCTACAGCGTAACGATTTTTT---AAGTAAA--------------TGTC------ATATTTTTCTTCGATTTCAAGTGACGCGTAACGGATGTAAAGCGATCTCC---GGATTC----------------CCAACATGACGGATA
droYak3	X:4647843-4648089 -		AGGATCAGTACTT------T-CTGCTTTT----ATTGTATCTGTT-GTCTCTGGTTGTAAATAAA--AA---CA---AA-TGTACACA-------------TATGT-----------TT-T-----TTCGTTA---AATAAAAAGAAAGC----TGAGTTTATGCAACCCGT---CCTACATATTATACATATGT----ATAGGTACATTCCTACAACGTAACGATTTTA----AAGTAAA--------------TGTC------ATATTTTTCTTCGATTTCAAGTGACGCGTAACGGATGTAAAGCGATCTCC---GGATTC----------------CCAACATGACGGATA
droEug1	scf7180000409553:17298-17534 +		AGGATTATTTCTG------TTT----TTTATTGCATGTTTCTGTTTTTTTCTCAATACAAA--AA-ATACAACA---AA-TG-----------------------TGT--TTA----TTTT-----TTTGTAA---ATAAAAAAGAAAGCT---TAAGTTTATGCAAC-CGT---CCTACATATTATACAT--GT----------AC--TCGTACAACGTAATGCTTTTT----AAATAAA--------------TGTC------ATATTTCTCTTCGATTTCAAGTGACGCGTAACGGATGTAAAACGATCTAC---GGATTC----------------CCAACATGACGGATA
droBia1	scf7180000302421:2538297-2538520 +		TGGCTCATTACTT------TTTAGCTGTT----GCTGT-TCTGCT-GTCTCTCGATGTAAATAAA-AAA---CA---AA-CG-----------------------TGT--TCC----CT-T-----TTT-------ATGAAAAAGAAAGCT---CGGGCTTATGCAACACGT---CCTACATATGACACA--------------------CGTACAACGCAACGATTTTT----AAGTAAA--------------TGCC------TTATTTCTCTTCGATTTCAAGTGACGCGCAACGGATGTGAAGCGATCCAC---GGATGC----------------CCAACATGACGGATA
droTak1	scf7180000415248:574773-575006 -		AGGATTATTACTT------TTTTGTTTTT----GTCATATCTGTT-GTTTCTCAATGTAAATAAA-AAA---CA---CG-AA-----------------------TAT--TCCATTTTT-T-----TTTGTCC---ATTAAAAAGAAAGCT---TGAGTTTATGCAACCCGT---CCTACATATTATACAC-------------------CGTACAACGTAATGATTTTT----AAATAAA--------------TGCC------ATATTTCTCTTCGATTTCAAGTGACGCGTAACGGATGTAAAGCGATCCAC---GGATTT----------------CCAACATGACGGATA
droEle1	scf7180000491018:214443-214668 -		AGGATTATTACGT------TTG-TTTGCC----GTTGACTCTGTT-GTTTCTCCATGTAAATACA-AAA---CA---AA-AG-----------------------TAT--AAA----TTGT-----TTTGTAATTAACAAAAAAGAAAGCT---TGAGCTTATGCAACTCGT---CCTACATATTATACA--------------------------------CGATTTTT----AAATAAA--------------TGCAATTTAAATTTTTCTCTTCGATTTCAAGTGACGCGTAACGGATGTAAAGCGAATTAC---GGATTC----------------CCAACATGACGGATA
droRho1	scf7180000779334:968156-968390 -		AGGATTATTAAATATTGTTTTG-TATGTT----GTTGTATCTGAT-GTTTCTCAATGTAAATACG-AGA---CA---GA-AG-----------------------TTT--AAA----TTGT-----TTTGTCA---ATCAAAAAGAAAGCT---TCAGCTTATGCAACTTGT---CCCACATATTATACT--------------------TGTATAGCGTAATGTTTTTT----AAATAAA--------------TTCC------ATATTTCTCTTCGTTTTCAAGTGACGCGTAACGGATGTAAAGCGAACTAC---GGATTC----------------CCAACATGACGGATA
droFic1	scf7180000453901:702601-702814 -		AAGATTATTGATC------TTT-CTTTTT----GTTTCATCTTTT-GTTTCTCAATGAAAA--AG-CTA---------C-AG-----------------------TAC--TTA----TT-T-----TTTGCAA---TTCAAAAAGAAAGCT---TGCTTTTATGCAACCCGT---CCTACATATTATACAT--------------------TTATAACGTAACGATTTTA----AAATAAA--------------CGAC------ATATTTCTCTTCGATTTCAAGTGACGCGTAACGGATGTAAAGCGAT------------T----------------CCAACATGACGGATA
droKik1	scf7180000302517:63603-63814 -		---------------------------------------TCTGTT-GTTTCACAATGCAAATAAA-ATACAATA---A----------------------ATATGTCT--TCT----TT-TTTTTTTTTGG----------------AGCTGGAAATGTTTATGCAACC-GTCGCCC--CTTTT--------------------------CGTACAA--TAATCATTTTCACAAAAATAAATATCATAAAAAAAATATA---TATATATTTCTCTTCGATTTCAAGTGACGCGTAACGGATGCAAAGCGAGCTGC---GAG-CC----------------CAAAAATGACGGATC
droAna3	scaffold_13117:706210-706288 +		---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCC----AATTAAA--------------TAAT------ATATTTCTCTTCGATTTCAAGTGCCGCGCCACGGATGAGAACCGGC-----------CC----------------CCACAATGACGGATA
droBip1	scf7180000396412:625488-625595 +		ATA----------------------------------------------------------------TA-----------------------------------------------------------------------------------TAAACGTTTATGCAACCC-T---CT----------------------------------------------GACATCC----AATTAAA--------------TAAT------ACATTTCTCTTCGATTTCAAGTGTCGCGCCACGGATGTGAACC----------GGAGCC----------------CCAAAATGACGGATA
dp5	XL_group1e:6911897-6911998 +		A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAAA--------------TACA-----AGTATTTCTATTCGATTTCAAGTGACGCGTAACGGATGCAAAGCGAACTCCAGCGGAATCCCCAGCACTAGCAGCACCAACATGACGGATA
droPer2	scaffold_25:248518-248608 +		A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTTATATTCGATTTCAAGTGACGCGTAACGGATGCAAAGCGAACTCCAGCGGAATCCCCAGCACTAGCAGCACCAACATGACGGATA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

AGGATCAGTACTT------TTTTGCTTT-------------TATT-GTCTCTTATTGAAAAAAAA--AA---CATCAAAATTTACACATAATA------TATATGTGC--ATA----TT-T-----TTTGTTA---AATTAAAAGAAAGT----TGAGTTTATGCAGCCCGG---TCAATATCTCATACATATGT----------ACATTCCTACAACGTAATGATTTTTA---AAGCAAA--------------TTTA------ATATTTTTCTTCGATTTCAAGTGACGCGTAACGGATGTGAAGCGATCTCC---GGGTTC----------------CCACCATGACGGATA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...............................................................................................................................................................................................................................................................................................GACGCGTAACGGATGTGAAGC...............................................	21	1	5.00	5	0	2	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................TGACGCGTAACGGATGTGAAGC...............................................	22	1	3.00	3	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................CGGATGTGAAGCGATCTCC---.....................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................ATGTGAAGCGATCTCC---GGGG.................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................AAGCAAA--------------TTTA------ATATTTTTCT................................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.................................................TCTTATTGAAAAAAAA--AA---...........................................................................................................................................................................................................................................................................................	18	2	1.00	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................AACGGATGTGAAGCGATCTCC---.....................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................GGATGTGAAGCGATCTCC---GGGTTC----------------CCACC..........	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................GTAACGGATGTGAAGCGATCTCC---.....................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................GATCTCC---GGGTTC----------------CCACCATGACGG...	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

AGGATCAATACTT------TTTTGCTTT-------------TTTT-GTCTCTTATTGGAAAAAAA--AA---CAACAAAATTTACGCATAATA------TATATGTGC--ATA----TT-T-----TTCGTTA---AATTAAAAGAAAGT----TGAGTTTACGCATACCGG---TCAATATCTCATACA------------------TTCCTACAACGTAATGATTTTTA---AAGCAAA--------------TTTA------ATATTTTTCTTCGATTTCAAGTGACGCGTAACGGATGTGAAGCGATCTCC---GGGTTC----------------CCACCATGACGGATA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
................................................................................................................................................................................................................................................................................................ACGCGTAACGGATGTGAAGC...............................................	20	1	4.00	4	0	0	4	0
.................................................................................................................................................................................................................................................................................................CGCGTAACGGATGTGAAGC...............................................	19	1	3.00	3	0	0	3	0
...............................................................................................................................................................................................................................................................................................GACGCGTAACGGATGTGAAGC...............................................	21	1	2.00	2	0	0	2	0
....................................................................................................................................................................................................................................................................................................GTAACGGATGTGAAGCGAT............................................	19	1	2.00	2	0	0	2	0
..................................................................................................................................................................................................................................................................................................GCGTAACGGATGTGAAGC...............................................	18	1	2.00	2	0	0	2	0
...................................................................................................................................................................................................................................................................................................CGTAACGGATGTGAAGCG..............................................	18	1	1.00	1	0	0	1	0
....................................................................................................................................................................................................................................................................................................................GATCTCC---GGGTTC----------------CCACCATGACG....	24	1	1.00	1	1	0	0	0
....................................................................................................................................A---AATTAAAAGAAAGT----TGAGTTT..................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0
...........................................................................................................................................................................................................................................................................................................ATGTGAAGCGATCTCC---GGGT.................................	20	1	1.00	1	0	1	0	0
....................................................................................................................................................................................................................................................................................................................GATCTCC---GGGTTC----------------CCACCAT........	20	1	1.00	1	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................C---GGGTTC----------------CCACCATGACGG...	19	1	1.00	1	0	0	1	0
....................................................................................................................................................................................................................................................................................................................GATCTCC---GGGTTC----------------CCACCATGACGGAT.	27	1	1.00	1	1	0	0	0
....................................................................................................................................................................................................................................................................................................GTAACGGATGTGAAGCGATC...........................................	20	1	1.00	1	0	1	0	0
..........................................................................................................................................................................................................................................................................................................GATGTGAAGCGATCTCC---GG...................................	19	1	1.00	1	0	1	0	0
.....................................................................................................................................................................................................................................................................................................................ATCTCC---GGGTTC----------------CCACCATGACGG...	24	1	1.00	1	0	0	1	0
.................................................................................................................................................................................................................................................................................................................AGCGATCTCC---GGGTTC----------------CCACC..........	21	1	1.00	1	0	0	1	0

dm3

AGGATCAGTACTT------TTTTGCTTTT----ATTGTCTCTTTT-GTCTCTTATTGGAAAAAAATAAA---CA---AAATTTACACGTAATATACA--TATATGTGCATATA----TT-T-----TTCGTTA---AATTAAAAGAAAGT----TGAGTTTATGCATC---------------TTATACATATGC----------ACATTCCTACAACGTAATGATTTTTA---AAGTAAA--------------TTTA------ATATTTTTCTTCGATTTCAAGTGACGCGTAACGGATGTGAAGCGATCTCC---GGGTTC----------------CCAACATGACGGATA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
....................................................................................................................................................................................................................................................................................................GTAACGGATGTGAAGCGAT............................................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................GACGCGTAACGGATGTGA..................................................	18	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................ATATTTTTCTTCGATTTCAA......................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................CGCGTAACGGATGTGAAGCGAT............................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................GACGCGTAACGGATGTGAAGCG..............................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................GTGAAGCGATCTCC---GGGT.................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................GCGTAACGGATGTGAAGC...............................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................GATGTGAAGCGATCTCC---GGGT.................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................GACGCGTAACGGATGTGAAGC...............................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
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.................................................................................................................................................................................................................................................................................................CGCGTAACGGATGTGAAGCG..............................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................TCTCC---GGGTTC----------------CCAACATGACG....	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................GATGTGAAGCGATCTCC---GGGTTC----------------CC.............	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................CGATCTCC---GGGTTC----------------CCAACATGACGGA..	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.............................................................................................................................................................................................................................................................................................................GTGAAGCGATCTCC---GGGTTC----------------C..............	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................GCGATCTCC---GGGTTC----------------CCAA...........	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................GCGTAACGGATGTGAAGA...............................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................GACGCGTAACGGATGTGAAGCGAT............................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................TGAAGCGATCTCC---GGGTTC----------------CCAACATGA......	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................CGTAATGATTTTTA---AATC.....................................................................................................................	18	13	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

AGGAGTAT-------------ATGCTTTT-------------ATT-GTAT-----------------------------ATGTACATATAT-GTATGTATATATGTAT--ATT----TT-A-----TTTGTTA---AATAAAAAGAAAGC----TGAGTTTACGCAATCCGT---CCTACATATTATACACATGTACATATATGTACATTCCTACAGCGTAACGATTTTTT---AAGTAAA--------------TGTC------ATATTTTTCTTCGATTTCAAGTGACGCGTAACGGATGTAAAGCGATCTCC---GGATTC----------------CCAACATGACGGATA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...............................................................................................................................................................................................................................................................................................GACGCGTAACGGATGTAAAGC...............................................	21	1	7.00	7	1	0	0	0	5	1	0
...........................................................................................................................................................................................................................................................................................................ATGTAAAGCGATCTCC---GGA..................................	19	1	1.00	1	0	0	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................ATGTAAAGCGATCTCC---GG...................................	18	1	1.00	1	0	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................TGACGCGTAACGGATGTAAAGC...............................................	22	1	1.00	1	0	0	0	0	1	0	0
......................................................................................................................................................................................................................................................................................................................TCTCC---GGATTC----------------CCAACATGACG....	22	1	1.00	1	0	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................CTCC---GGATTC----------------CCAACATGACG....	21	1	1.00	1	0	0	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................AACGGATGTAAAGCGATCTCC---.....................................	21	1	1.00	1	0	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................AAGCGATCTCC---GGATTC----------------CCAAC..........	22	1	1.00	1	0	0	0	0	1	0	0
................................................................................................................................................................................................................................................................................................................................ATTC----------------CCAACATGACGGATA	19	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................AAAGCGATCTCC---GGATTC----------------CCAACATGAC.....	28	1	1.00	1	1	0	0	0	0	0	0

droYak3

AGGATCAGTACTT------T-CTGCTTTT----ATTGTATCTGTT-GTCTCTGGTTGTAAATAAA--AA---CA---AA-TGTACACA-------------TATGT-----------TT-T-----TTCGTTA---AATAAAAAGAAAGC----TGAGTTTATGCAACCCGT---CCTACATATTATACATATGT----ATAGGTACATTCCTACAACGTAACGATTTTA----AAGTAAA--------------TGTC------ATATTTTTCTTCGATTTCAAGTGACGCGTAACGGATGTAAAGCGATCTCC---GGATTC----------------CCAACATGACGGATA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...............................................................................................................................................................................................................................................................................................GACGCGTAACGGATGTAAAGC...............................................	21	1	9.00	9	1	0	3	1	0	0	4	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................ATCTCC---GGATTC----------------CCAACATGAC.....	22	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................ATGTAAAGCGATCTCC---GGA..................................	19	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
....................................................................................................................................................................................................................................................................................................GTAACGGATGTAAAGCGAT............................................	19	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................CTCC---GGATTC----------------CCAACATGACG....	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................TCTCC---GGATTC----------------CCAACATGACG....	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................AGCGATCTCC---GGATTC----------------CC.............	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................CGATCTCC---GGATTC----------------CCAACATGACGG...	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................TGACGCGTAACGGATGTAAAG................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................C---GGATTC----------------CCAACATGACGG...	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................GATCTCC---GGATTC----------------CCAACATGAC.....	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................ATGTAAAGCGATCTCC---GGAT.................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
....................................GTATCTGTT-GTCTCTGGTTGTAAATAAA--A...............................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................ATTGTATCTGTT-GTCTCTGGT............................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................AAAGCGATCTCC---GGATTC----------------CC.............	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................TCTCC---GGATTC----------------CCAACATGACGGAT.	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................TCTCC---GGATTC----------------CCAACATGACGG...	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................GCGTAACGGATGTAAAGCGATCTCC---GGA..................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................GATGTAAAGCGATCTCC---GGATTC----------------CC.............	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................TGTAAAGCGATCTCC---GGATTC----------------...............	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................GATCTCC---GGATTC----------------CCAACATGA......	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................TGTAAAGCGATCTCC---GGATTC----------------CCAACAT........	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................GTAAAGCGATCTCC---GGATT................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................ATCTCC---GGATTC----------------CCAACATGACGG...	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................GATCTCC---GGATTC----------------CCAACATGACGGAT.	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................CAACGTAACGATTTTA----AAGT.....................................................................................................................	20	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

AGGATTATTTCTG------TTT----TTTATTGCATGTTTCTGTTTTTTTCTCAATACAAA--AA-ATACAACA---AA-TG-----------------------TGT--TTA----TTTT-----TTTGTAA---ATAAAAAAGAAAGCT---TAAGTTTATGCAAC-CGT---CCTACATATTATACAT--GT----------AC--TCGTACAACGTAATGCTTTTT----AAATAAA--------------TGTC------ATATTTCTCTTCGATTTCAAGTGACGCGTAACGGATGTAAAACGATCTAC---GGATTC----------------CCAACATGACGGATA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TGGCTCATTACTT------TTTAGCTGTT----GCTGT-TCTGCT-GTCTCTCGATGTAAATAAA-AAA---CA---AA-CG-----------------------TGT--TCC----CT-T-----TTT-------ATGAAAAAGAAAGCT---CGGGCTTATGCAACACGT---CCTACATATGACACA--------------------CGTACAACGCAACGATTTTT----AAGTAAA--------------TGCC------TTATTTCTCTTCGATTTCAAGTGACGCGCAACGGATGTGAAGCGATCCAC---GGATGC----------------CCAACATGACGGATA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AGGATTATTACTT------TTTTGTTTTT----GTCATATCTGTT-GTTTCTCAATGTAAATAAA-AAA---CA---CG-AA-----------------------TAT--TCCATTTTT-T-----TTTGTCC---ATTAAAAAGAAAGCT---TGAGTTTATGCAACCCGT---CCTACATATTATACAC-------------------CGTACAACGTAATGATTTTT----AAATAAA--------------TGCC------ATATTTCTCTTCGATTTCAAGTGACGCGTAACGGATGTAAAGCGATCCAC---GGATTT----------------CCAACATGACGGATA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AGGATTATTACGT------TTG-TTTGCC----GTTGACTCTGTT-GTTTCTCCATGTAAATACA-AAA---CA---AA-AG-----------------------TAT--AAA----TTGT-----TTTGTAATTAACAAAAAAGAAAGCT---TGAGCTTATGCAACTCGT---CCTACATATTATACA--------------------------------CGATTTTT----AAATAAA--------------TGCAATTTAAATTTTTCTCTTCGATTTCAAGTGACGCGTAACGGATGTAAAGCGAATTAC---GGATTC----------------CCAACATGACGGATA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AGGATTATTAAATATTGTTTTG-TATGTT----GTTGTATCTGAT-GTTTCTCAATGTAAATACG-AGA---CA---GA-AG-----------------------TTT--AAA----TTGT-----TTTGTCA---ATCAAAAAGAAAGCT---TCAGCTTATGCAACTTGT---CCCACATATTATACT--------------------TGTATAGCGTAATGTTTTTT----AAATAAA--------------TTCC------ATATTTCTCTTCGTTTTCAAGTGACGCGTAACGGATGTAAAGCGAACTAC---GGATTC----------------CCAACATGACGGATA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AAGATTATTGATC------TTT-CTTTTT----GTTTCATCTTTT-GTTTCTCAATGAAAA--AG-CTA---------C-AG-----------------------TAC--TTA----TT-T-----TTTGCAA---TTCAAAAAGAAAGCT---TGCTTTTATGCAACCCGT---CCTACATATTATACAT--------------------TTATAACGTAACGATTTTA----AAATAAA--------------CGAC------ATATTTCTCTTCGATTTCAAGTGACGCGTAACGGATGTAAAGCGAT------------T----------------CCAACATGACGGATA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

---------------------------------------TCTGTT-GTTTCACAATGCAAATAAA-ATACAATA---A----------------------ATATGTCT--TCT----TT-TTTTTTTTTGG----------------AGCTGGAAATGTTTATGCAACC-GTCGCCC--CTTTT--------------------------CGTACAA--TAATCATTTTCACAAAAATAAATATCATAAAAAAAATATA---TATATATTTCTCTTCGATTTCAAGTGACGCGTAACGGATGCAAAGCGAGCTGC---GAG-CC----------------CAAAAATGACGGATC	Size	Hit Count	Total Norm	Total
No Reads

droAna3

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCC----AATTAAA--------------TAAT------ATATTTCTCTTCGATTTCAAGTGCCGCGCCACGGATGAGAACCGGC-----------CC----------------CCACAATGACGGATA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...............................................................................................................................................................................................................................................................................................GCCGCGCCACGGATGAGAACC...............................................	21	1	2.00	2	1	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................GCCACGGATGAGAACCGGC-----------C................................	20	1	2.00	2	0	1	0	0	1	0
...............................................................................................................................................................................................................................................................................................GCCGCGCCACGGATGAGAACCGGC-----------.................................	24	1	2.00	2	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................GCGCCACGGATGAGAACC...............................................	18	1	2.00	2	0	1	0	0	1	0
..............................................................................................................................................................................................................................................................................................TGCCGCGCCACGGATGAGAACCGG.............................................	24	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................GCGCCACGGATGAGAACCGGC-----------CC----------------...............	23	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................GCCGCGCCACGGATGAGAACCGGC-----------CC----------------CC.............	28	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................GCGCCACGGATGAGAACCGGC-----------CC----------------CC.............	25	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................GCCACGGATGAGAACCGGC-----------CC----------------CCA............	24	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................GTGCCGCGCCACGGATGAGAACC...............................................	23	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................TGCCGCGCCACGGATGAGAACCG..............................................	23	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................GCCGCGCCACGGATGAGAAC................................................	20	1	1.00	1	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................GAGAACCGGC-----------CC----------------CCACAATGACG....	23	1	1.00	1	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................GCGCCACGGATGAGAACCGGC-----------CC----------------CCAC...........	27	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................TGCCGCGCCACGGATGAGAACC...............................................	22	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................CGCGCCACGGATGAGAACC...............................................	19	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................CGCCACGGATGAGAACCGGC-----------CC----------------CC.............	24	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................GCGCCACGGATGAGAACCGGC-----------.................................	21	1	1.00	1	1	0	0	0	0	0

droBip1

ATA----------------------------------------------------------------TA-----------------------------------------------------------------------------------TAAACGTTTATGCAACCC-T---CT----------------------------------------------GACATCC----AATTAAA--------------TAAT------ACATTTCTCTTCGATTTCAAGTGTCGCGCCACGGATGTGAACC----------GGAGCC----------------CCAAAATGACGGATA	Size	Hit Count	Total Norm	Total
No Reads

dp5

A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAAA--------------TACA-----AGTATTTCTATTCGATTTCAAGTGACGCGTAACGGATGCAAAGCGAACTCCAGCGGAATCCCCAGCACTAGCAGCACCAACATGACGGATA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.......................................................................................................................................................................................................................................................................................................................CTCCAGCGGAATCCCCAGCACTAGC...................	25	1	2.00	2	0	1	0	0	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................GAACTCCAGCGGAATCCCCAGCACTAGC...................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................ATGCAAAGCGAACTCCAGCGGAAT................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	1
..............................................................................................................................................................................................................................................................................................TGACGCGTAACGGATGCAA..................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................CAGCGGAATCCCCAGCACTAGC...................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................CTCCAGCGGAATCCCCAGCA........................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................GACGCGTAACGGATGCAAAG................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	1
.......................................................................................................................................................................................................................................................................................TTTCAAGTGACGCGTAACGG........................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................GACGCGTAACGGATGCAAAGC...............................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................CCAGCGGAATCCCCAGCACTAGCAGCAC..............	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................ACTCCAGCGGAATCCCCAGCACT......................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................CCAGCGGAATCCCCAGCACTAGC...................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0

droPer2

A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTTATATTCGATTTCAAGTGACGCGTAACGGATGCAAAGCGAACTCCAGCGGAATCCCCAGCACTAGCAGCACCAACATGACGGATA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...............................................................................................................................................................................................................................................................................................GACGCGTAACGGATGCAAAGC...............................................	21	1	3.00	3	2	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................GAACTCCAGCGGAATCCCCAGCACTAGC...................	28	1	2.00	2	2	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................AACGGATGCAAAGCGAACTCC........................................	21	1	2.00	2	2	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................GCGAACTCCAGCGGAATCCCCAGCACT......................	27	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................CGGAATCCCCAGCACTAGC...................	19	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................CGCGTAACGGATGCAAAGCGAACTCCAGC.....................................	29	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................TGACGCGTAACGGATGCAAAGC...............................................	22	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................GCAGCACCAACATGACGGAT.	20	1	1.00	1	1	0	0	0	0	0

dsi_14063

x:3464904-3465053 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-16.1	-16.1	-15.8