ID:

dsi_14060

 Coordinate:

2r:19062127-19062387 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-14.8 -14.2 -14.2

Flybase annnotation

CDS [2r_19061918_19062096_-]; five_prime_UTR [2r_19062097_19062128_-]; exon [2r_19061918_19062128_-]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------####################################################
CCCACTGAAGATGTCATCGGACCGGAATTATTATAACACAATGAACAAATGTCATTTAATTTATATTCAATAATATATACTGCTGTTTCAAAATAATAAAATTTGCTATCTAATGTGTAATGTTCAAAATGTACACAATATTTCTTACACTGTACATCCAATGGCATTTGTAACGCAGAGAGAATAACTCATTTGATTTCCATGCGCTGAGTTAATTGCCAGACCAACGCCTCGGTTAAGAGAAATCGGGAGAGTGATTCTGATTTTGATTTTCCCTCCCATGATCTCTCAAAATTTGATCTATCTTTCAGTCACCGATCGTTCTCGCTGGAACTCGCATCATGACCGTAGACGAACCGCA
*****************************************************************************************************************.....((((((....(((((((...((.....))...))))))).....)))))).....((((..((((.(((.....))).))))..))))......***************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M023
head
 O002
Head
 SRR902009
testis
 GSM343915
embryo
 M053
female body
......................................................................................................................................................................................................................................................................................................................................................TGACCGTAGACGAACCGC. 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................GTTCTCGCTGGAACTCGC....................... 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
................................................TTGTCATTTAATTTATATTCAATAAGA.............................................................................................................................................................................................................................................................................................. 27 2 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................CAGTCACCGATCGTTCTCGCTGG.............................. 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.............................................................................TACTGCTGTTTCAAACGAATAAAATT.................................................................................................................................................................................................................................................................. 26 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................TGTGTAATGTTCAAAA........................................................................................................................................................................................................................................ 16 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................................TCATTTGATTTCCATGCGCTGAGT..................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TGCCAGACCAACGCCTCGGTTAAGA........................................................................................................................ 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................AGTCACCGGTCGTTCTCGCTGGA............................. 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................ATTTGTAACGCAGAGAGAATAACTCA.......................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................CCAACGCCTCGGTTAAGAGAAATCGGGA.............................................................................................................. 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................GAACTCGCATCATGACCG............. 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
........AGATGTCATCGGACCGGAATTATTATA...................................................................................................................................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................AATAGCCAGGCCAACGCATCGG.............................................................................................................................. 22 3 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0
...........................................................................................................................................................................................CTCATTTGATTTCCATGCGCTT........................................................................................................................................................ 22 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
......................................................................................TTCAAAATAATAAAATTTGCTATC........................................................................................................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................AGTCACCGATCGTTCTCGCTGGAACT.......................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................TATCTTTCAGTCACCGATCGTTCT.................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................TGATTTCCATGCGCTGAGTTAAT................................................................................................................................................. 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................................ATGACCGTAGACGAACCG.. 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................GAACTCGCATCATGACCGTA........... 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
................................................................................................TAAAATTTGCTATCTAATGTGTAATGTT............................................................................................................................................................................................................................................. 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................TAAGAGAAATCGGGAGAGTGATTCTGA.................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................TTACACTGTACATCCAATGGCATTTGT.............................................................................................................................................................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................CGCTTGAGAGAACTCGGGAG............................................................................................................. 20 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................CGCTTGAGAGAACTCGGGAGA............................................................................................................ 21 3 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................................................TAAGAGAAATCGGGAGAGTGATTC..................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................GTTCTCGCTGGAACTCGCATCATGACCGTA........... 30 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
..............................................................................................................................................................................................................................................AGAGAACTCGGGAGA............................................................................................................ 15 1 8 0.38 3 0 0 0 1 1 1 0 0 0 0 0
.....TGAAGTTGTCATCGGACGG................................................................................................................................................................................................................................................................................................................................................. 19 2 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................................TTGAGAGAACTCGGGAGA............................................................................................................ 18 2 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................TGATGTTGATGTTCCCTCC.................................................................................. 19 2 7 0.29 2 2 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................GCCTCGGTCGAGAGATATCG................................................................................................................. 20 3 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................ACTACCATGATCTCTCA...................................................................... 17 2 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................ATATACTGCTGTTTCGAT............................................................................................................................................................................................................................................................................. 18 2 8 0.13 1 0 0 0 0 0 0 0 0 0 0 1
.......................................................................................................................................................................................................................................TCGGTTGAGAGATATCG................................................................................................................. 17 2 10 0.10 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................TCTGATAAGAGACATCGG................................................................................................................ 18 3 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................CTCCGTTGAGAGATATCGG................................................................................................................ 19 3 12 0.08 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................GTGATTCTGATTTAGA............................................................................................ 16 1 13 0.08 1 0 0 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................................................TGAGAGAACTCGGGAGA............................................................................................................ 17 2 15 0.07 1 0 0 0 0 0 1 0 0 0 0 0
...............................................................................................................ACTGTGTAATGTTAAAAA........................................................................................................................................................................................................................................ 18 2 18 0.06 1 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................CTTGATCTTCCGTCCCATG.............................................................................. 19 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

GGGTGACTTCTACAGTAGCCTGGCCTTAATAATATTGTGTTACTTGTTTACAGTAAATTAAATATAAGTTATTATATATGACGACAAAGTTTTATTATTTTAAACGATAGATTACACATTACAAGTTTTACATGTGTTATAAAGAATGTGACATGTAGGTTACCGTAAACATTGCGTCTCTCTTATTGAGTAAACTAAAGGTACGCGACTCAATTAACGGTCTGGTTGCGGAGCCAATTCTCTTTAGCCCTCTCACTAAGACTAAAACTAAAAGGGAGGGTACTAGAGAGTTTTAAACTAGATAGAAAGTCAGTGGCTAGCAAGAGCGACCTTGAGCGTAGTACTGGCATCTGCTTGGCGT
*****************************************************************************************************************************************************.....((((((....(((((((...((.....))...))))))).....)))))).....((((..((((.(((.....))).))))..))))......***************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M025
embryo
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 M053
female body
....................................................................................................................................................................................................................................................................................AGGGTACTAGAGAGGTTTAAACTAGAT.......................................................... 27 1 1 2.00 2 0 2 0 0 0 0 0
............................................................................................................................................................AGATTACCGTAAACATTGCGTCTCT.................................................................................................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................TTAAACGATAGATTACACATTACAAGT........................................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0
.........CTACAGTAGCCTGGCCTTAATAATATTGT................................................................................................................................................................................................................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0
.............AGTAGCCTGGCCTTAATAATATTGTGT................................................................................................................................................................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................CTAAAACGGAAGGTACTAG........................................................................... 19 2 1 1.00 1 0 0 0 1 0 0 0
..................................TTGTGTTATTTGTTTACAGGAACTTA............................................................................................................................................................................................................................................................................................................. 26 3 1 1.00 1 0 0 1 0 0 0 0
...........................................................................................................................................................................................................................................................................CTAAAGCGGAAGGTACTAG........................................................................... 19 3 12 0.67 8 0 0 0 4 4 0 0
...............................................................................................................................................................................................................................................................................................GAGTTTTAGACTAGATA......................................................... 17 1 3 0.33 1 0 0 1 0 0 0 0
.............................................................................ATGACGAAAAAGTTTT............................................................................................................................................................................................................................................................................ 16 1 4 0.25 1 0 0 0 0 0 1 0
....................................................................................................................................TGTGTTAGACAGAATGTG................................................................................................................................................................................................................... 18 2 5 0.20 1 0 0 1 0 0 0 0
.......................................................................................AGTTTTATTATTGTAAA................................................................................................................................................................................................................................................................. 17 1 16 0.13 2 0 0 0 0 0 2 0
...........................................................................................................................................................................................................................................................................CTAAAACTGAAGGTACTAG........................................................................... 19 3 20 0.10 2 0 0 0 0 0 0 2
...........................................................................................................................................................................................................................................................................CTAAAGCTGAGGGTACTAG........................................................................... 19 3 14 0.07 1 0 0 0 0 1 0 0
.............................................................................................................................................ACGAATGTAACATGTAGGTTT....................................................................................................................................................................................................... 21 3 15 0.07 1 0 0 0 0 0 1 0
......................................................................................................................................................................................................................................................................................................................................CCAGCTTGAGCCTAGTACT................ 19 3 16 0.06 1 0 0 0 0 1 0 0
............................................................................................................................................................................................................GTGACTCAATTAGCGG............................................................................................................................................. 16 2 20 0.05 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................................GGCATCTGCTAGGCGA 16 2 20 0.05 1 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:19062077-19062437 - dsi_14060 CCCAC--TGAAGA---TG--TCATC-GGACCGGAA------------TTA------------------TTATAACACAATGAACAAAT--------------------------------------------------------------------------------G----------------------TCATTTAATTTATATTCAATAA--------T---------AT-ATACTGCTGTTTCAAAATAATAAAA-TTTGCTATCTAATGTGTAATG--TTCA------------------------------------------------------------------------------------------------------------------------------------------AAATG--TAC--------------------------ACAATATTTCT---------------------------TACACTGTACATCCAATGGCA-TTTGTAACGCA--GAGAGAATAACTCATTTG-ATTTCCATGCGCTGAGTTAATTGCCAGACCAACGCCTCGGTT-AAGAGA----------------------AA----------------TCG---------GGAGAGTG----------------------------ATTCTGATTTTGATT-TTC-C--------------------CTCCCATGATCTCTCAAAATTTGATCTAT--CTTTCAGTCA----CCGATCGTTCTCGCTGGAACTCGCA---TCATGACCGTAGACGAACCGCA
droSec2 scaffold_14471:408-781 - CCCAC--TGAAGA---TG--TCATC-GGATCAGAA------------CTA------------------TTATAAAACAATGAACAAAT--------------------------------------------------------------------------------G--------TAGATCAGTTTT-GTCATTTAATTTATATTCAATAA--------T---------AT-ATACTGCTGTTTCAAACGAATAAAA-TTTGTTATCTAATGTGTAATG--TTCA------------------------------------------------------------------------------------------------------------------------------------------AAATG--TAC--------------------------ACAATATTTCT---------------------------TACACTGTACATCCAATGGCA-TTTGTAACGCA--GAGAGAATAACTCACTTG-ATTTCCATGCGCTGAGTTAATTACCAGACCAACGCCTCGGTT-AAGAGA----------------------AA----------------TCG---------GGAGAGTG----------------------------ATTCTGATTTTGATT-TTC-C--------------------CTCCCAAGATCTCTCCAAATTTGATCTAT--CTTTCAGTCA----CCGATCGTTCTCGCTGGAACTCGCA---TCATGACCGTAGACGAACCGCA
dm3 chr2R:18534695-18535079 - CCCAC--TGAAGA---AGGATCATC-GGATCCGAA------------TTA------------------TTATAACACAATGAACAAAT--------------------------------------------------------------------------------G--------TAGATCAGTTTT-GTCATTTAATTTATATTCAATAA--------TAATA-ATAAAT-ATACTGCTGTTTGAAACGAATAAAAGTTTACTATTTAATGTGTAATG--CTCA------------------------------------------------------------------------------------------------------------------------------------------AAATG--TAC--------------------------ACTATACTTTT---------------------------TACACTGTACATCCAATGGCA-TTTGTAACGCA--GAGAGAATAACTCATTTG-ATTTCCATGCACTAACTTAATTACCAGACCAACGCCTCGGTT-AAGAGA----------------------AA----------------TCG---------GGAGAGTG----------------------------ATTCTGATTTTGATT-TTC-C--------------------CTCCCATGATCTCTCCAAATTTGATCCAT--CTTTCAGTCA----CCGATCGTTCTCGCTGGAACTCGCA---TCATGACCGTGGACGAACCGCA
droEre2 scaffold_4845:7419031-7419368 + GTCA-------------------TC-GGA-CAGAA------------TAA------------------TTATAGCAAGAGGAGCG-AT--------------------------------------------------------------------------------G--------TAACTCAGTTTT-GTAATGCTATTTAAATACCATAA--------A---------AC-ACACTGTT--TTTAAGCGAATAAAA-ATTGTAA-----------------TCA------------------------------------------------------------------------------------------------------------------------------------------AAACT--TAG--------------------------GCAATATTTCT---------------------------TACACTGTACATCCAATGGCA-TTTGTAACGCA--GAGAGCATAATTCATTTG-ATTTCCATGCGTTGACTTAATTACCAGACCAACGCCTCGGTT-AAGAGC----------------------AA----------------ATG---------GGAGAGAG----------------------------ATTCTGATTTTGAT---------------------------CACCCATGATCTCTCCAAATTTGATATAT--CTTTCAGTCA----CCGATCGTTCTCGCTGGAACTCGCA---TCATGACCGCCGACGAACCGCA
droYak3 2R:16000124-16000452 - C-------GAAGC---TG--TCATC-GAATCAGAA------------TT---------------------------------------------------------------------------------------------------------------------------------AACTCAGTTTT-GTACTCTTATTTAAATACAATAA--------A---------AT-AAA--GTT--TTTAA-------------------------------------C------------------------------------------------------------------------------------------------------------------------------------------AAATG--TAA--------------------------GCAATATTTCT---------------------------TGCACTGTACATCCAATGGCC-TTTGTAATGCA--GAGAGAATAATTCATTTG-ATTTCCATGCGTCGACTTAATTACCAGACCAACGCCTCGGTT-AAGAGC----------------------AA----------------GTG---------GCAGAGAG----------------------------ATTCTAATTTTGATT-TTTCCCTCCCTTGATCAATCATGATCTCTCATGATCTCTCCAAATTTGATCTAT--CTTTCAGTCA----CCGCTCGTGTTCGCTGGAACTCGCA---TCATGACCGTAGAGGAACCGCA
droEug1 scf7180000409672:6468554-6468944 - ATCAT--TGGAGA---TG--TCATC-CGATCAA-------------TTTATCATCACAAAGAA-----------------------------TTTGG----------------------------------------------------------CAAAATTAAG--------------------TGTA-TTTTTATTATTATTTCTGAAAAAAATATGAA-----------------------------------------------------------A-AATAA--------------------AAGTTATATTAGTTTTTAACTATCTG-----------CGATTCTTATCTTT--------------------------------------ATTTTATAGACAAAAAA---ATATGAC--AAACG--TAT--------------------------AAAACTTTATT---------------------------TTCAGTGTACCTCAAATATAATTTTGTAACAAA--GAGATGATGATACA----------TATGCGGTAACTTAGTTACCAGACCAACGCCTCTGCG--AGAGAGA--------------------TA----------------TCG---------TTAAAGAG----------------------------ATTCAAATTCTGATT-TTCGC--------------------CTCTTATGATCTCTTCAGATTCGGTTCTA--GTTTCAGTCA----CCGATCGTTCTTGCTGGAATCCACA---TCATGACCGTAGACGAACCGCA
droBia1 scf7180000302143:2116247-2116688 + ATCCC--TAAGGA---TG--TCATC-TAATCAGC-------------C----------TGGAAAAAAG-------------------AATTCTATTATGGAAA-AGCGTCTT-------CTCTGTGTCATATTTGGA----TGTTATTATAAG--CAATAAAAACTGTG--------TTAAACTGTTTTTGA--TATTATTATTTCTCGTCAAAATATTAC-----------------------------------------------------------A-AATTA--------------------AA-------TAACCTATAAATATCAA-----------GGAGTTTTACATTTACTCTCAAA--------------------------------------------TAATA-----T----------TAA-------------------------ACGAAAATTATT---------------------------CGGTCTGTTTACCAAATGGTTTTTTGCAATAAA--GAGAAAATGGTTT--TTGAATAGGGTTGTGCTATATTAATTACCAGACCAACGCCTCAGAG--AGAAAAG--------------------AA----------------TCG---------GGCAAGAGAGGCA---ACGCCAGCTGGAAATC------TCTGATTCTGAT--------------------------------ACGATCTCTTTATATTTGGATCTA--CTTTCAGTCA----CCGATCATTCTCGCTAGAACTCACA---TCATGACCGTAGACGAGCCGCA
droTak1 scf7180000415379:752201-752598 - GTCAC--AAAGGA---TA--TC----CAATCTA-------------TTTATCATCTCAAGGATG--------------------------------------------TTTA-------TG-TGC--------TGGA----TGTTATAATTAA--CAATAAATACTATT--------TTTAACAGTTACAAG--TATTGT--------------------------------------------------------GTA-TTTCTTATCAATAGGATAATA-ATTCA--------------------AA-------AATGCTAT-------------------------------TTTTCTCTTAAA--------------------------------------------TAAAA-----------------------------------------------------------------------------------TGTTTGACACATTAATAAGAATTTTGTAATAAAGAGAGAGAATGATTTATAA--TATTCGATACGTTGATTTAATTACCAGACCAACGCCTCACCTAAAGAGATA--------------------TA----------------TCG---------GAAGAGAGAGACACA-ACGGTAGCTGGAAATC------TCCGAATCTAATA-TTC-C--------------------CTCGTGTGATCTCTTTAAATTTGTATCTA--CTTTCAGTCA----CCGATCATTCTCGCTAGAATTCACA---CCATGACCGTAGACGAACCGCA
droEle1 scf7180000491022:122360-122809 - ATCAC--TGAAGA---TG--TCATC-CGCTCGA-------------TTTGTTAACACAAGGAGAAATAATATAACAAAATGCTA---AGCTTTTTAATGAAAAAGGTGCCTT-------CT-TGTAGAATATTTTAA----TGTTTTAATAAAACCAAAAA--ACAATGCTTTTACTTTTTACTGTT----------------------------------------AAAAA-------------------------AAATATA----------------------------------TGTGTT----------------------------------------------------------------------------------------------------------------------ACAAAATTAATAC--------------------------ACAATTTTTTTTGGAAACCTTTGAATCAAATTTTGTTTTTTTTTATT-TTACAATGGAATTTGATAATTAA--GAGCGAATAATTTATATG-ATTTCCATTCGGCAACTTAATT----TGCCAACGCCTCAGTG--AGAGAAA--------------------TG----------------TCG---------AGAAAGAGAGATA---------TCTGGAGATCTCTAATTCTGAGTCTGTTT-CTC-C--------------------CCCAGGCGATCTCTTTAAATTTTGTTTTG--TATTTAGTCT----CCGATCGTTCTCGCTAGAACTCACA---TCATGACCGTAGAAGAGCCGCA
droRho1 scf7180000779246:2098-2318 + CACAC--T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCT---------------------------TTCTCTGTG-----GATGGTATTTTGTAATA---------AATGATTTATATG-TTTTCCATGCGTTAACTTAATTACCAGACCAACGCCTCACTG--AGAGAAA--------------------TA----------------TCG---------CTAAAGAGAGGGA-------------------------GCTGATTCTGATT-TTC-C--------------------CCCTAGCGATCTCTTTTAATTTTATTAAG--CATTCAGTCA----CCGATCGTTCTCGCTAGAATTCACA---TCATGACCGTAGACGAGCCGCA
droFic1 scf7180000454066:2478586-2479073 - ACAAC----AAGA---TG--TCATA-CTACTGGGA------------T----ACCACTTCTACAATAA-------------------AC------TCTTTAAA-CCCATTT----------------------------------------------------------------------------TA-TTTTAGTTATTTTAAAACAATAA--------A---------ATCATA--T----------------------------TTAATTTAA-ATGG-TAAAAAAGGCGTTTAAAT-TATATACCTAT-----------------TTATTTAAATTATAA----------------------GAATAAATGGGAAAATGTCAAAAAATATAAATATGTTTTAGTATGT---AGTTTTAAAATTTGGCCATCTTATACATA-AATCAACAATTAAAGAACATATTTTT---------------------------TTCTCTGTAAATCAAATGGAATTTTGTAATA----GTGAGAATAATTTATATG-TTTTGCATGCGTTAACTTAATTACCAGACCAACGCCTCATAG-AAGAGACA--------------------AA----------------TCG---------GAAAAGAGAGGTATCATCGGTAGCTGGAGAAC------TCAGATTCTAATT-TTC-C--------------------CTCGAATGATCTCTTTAGATTTGGTT-TA--CTTTCAGTCG----CCGATCGCTCTCGCTAGAGTTCACA---TCATGACCGTAGACGAGCCGCA
droKik1 scf7180000302470:471097-471575 + GCCAG--CGAAGA---TG--TCATA-CGATCCACACATTAACCTGATTGATCATCACATGGAGAGAAA-------------------AAT-ATTTAA----------------------------------------------------------CGAAAATTGA-----------------TAGCTTT-TTCCTGTCACTTTTTTTGAATAA--------A---------AT-ATA--T----------------------------TTTATATAT-TTA--TTAAAAAGGTAT---------------------------TTAAT-------------------------------TTTCTTAAAAAGATT----------------AATTAC-AATTTAAGTAAGAAAGA---AATTTAAAA--ACA--AAT-------ATAAACCCAACAAGAAGAGCGGAAA--------------------------------TTCTCCGTGCATCGTTTGA-ATTTTGTAATCGA--GAG----TAATTTAAATA-TTTTCGATGTCTTAACTTAATTACTCGACCAACGCCTCTGCG--AGAAACACACACAACACACGAGAGAATTAGAGAAACACTGAGAATCTGCCCAGAGCAAGAGAAAA---------------------ATC------TCT------GATT-TTC-T--------------A-----CATTTCCGATCTCTTTGAA-TCGATTTCG--CTTTCAGTTG----CCGCTCGTTCTCCAAAGAACTCACATCGCCATGACCGTCGACGAGCCAGA
droAna3 scaffold_13266:15503262-15503688 + ATCAC--TAGGGG---CG--CCGGA-AAATCATAACAATCA-------CATCACCACACGGAGGAAAA-------------------AC------TATGAAAA-TGGGTCAATAATTGGATACATATAATATATGGAAGAAGTTTAAAGTT--GCCAAAAGTTAA--------------------------------------TATTTA--------TTAAAAATA-AAAAAG-AGATTATTATT-----------------------------------------------------------TCCAACTAC-----------------CGGCTTTAATTTTAG----------------------GAGTTT----------------GATTATTAATTTGTGAAAGAAAGT---GTTTCTATAAAATCAC---------------------------------TACCTTA---------------------------TTTTCTGTGCATCCAATGGAATTTCGTAATT--------------------AA-ATTCTTGTCCATTAGCTGGAGAGCCAGTCGGAGGCTCCCCTA-GAGAAA----------------------AAGAGAA----------TATGT-------CAGAGAGTG---------------------ATC------TAT------AATTTTTC-C--------------------CACCCAAGATCTCTTG-AATTAGTTTTCG--CTTTCAGTCA----CTATTC---------AGAATTCACACCACAATGACCGTAGAAGAGCCGCA
droBip1 scf7180000396428:1348026-1348401 + CCATCATATGGGC---TG--CCGGA-GAATCATCACAACCA-------CATCACCACACAGTGAAAAG-------------------TC------TCAGAAAA-TGGGTCATTAATTGGATACA---------TGGAAGAATCTTAAAGTT--GCCAAAAGTTAA--------------------------------------TATTTA--------TTAAAAATA-AAAAA-------------------------AAATTTA----------------------------------TGAAATGCCAAGTACTGTCAATTTTTAA----------------------------------------------------------------------------------------------------GTCT--TG-------------------------------GGCTT-----------------------------TTTTCTGTGTA-CTAATGGAATTTCGTAATT--------------------AA-ATTCTTTCGCATTAGCTGGAGAGCCAGGCGGAGACTCCCCTA-GAGAAT----------------------AAGAGAA----------CCTGT-------CAGAGAGTG---------------------ATC------TAT------AATTTTTC-C--------------------CACCCAAGATCTCTTG-AATTAGTTTTCG--CTTTCAGTCA----CGATT---------TAGAATTCATAACACAATGACCGTTGAAGAGCCGCA
dp5 3:4018731-4018893 - TT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCACGCGCCTAATTAATTACCAGACCAACGCCTCACCA--CACGA----------------------GA----------------G-------------------AGGCACAA--------------TC----TCTCGCTCTCTGGTT-CTC-T--------------------TTTC--CGTTCGATTCACATTCTCTG-GCCATGTTCAGTCAGTCAGCGGGCA---GCAGTAGACAGCACA---ACATGGGCATGGACGAGCCGCA
droPer2 scaffold_2:4204698-4204860 - TT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCACGCGCCTAATTAATTACCAGACCAACGCCTCACCA--CACGA----------------------GA----------------G-------------------AGGCACAA--------------TC----TCTCGCTCTCTGGTT-CTC-T--------------------TTTC--CGTTCGATTCACATTCTCTG-GCCATGTTCAGTCAGTCAGCGGGCA---GCAGTAGACAGCACA---ACATGGGCATGGACGAGCCGCA
droWil2 scf2_1100000004513:4104870-4105120 + TGTGA--G-CAGATAAATG-CTGTACGAATCTGC-------------C----------TAGATATATG----------------------------------------------------TACATAT--------------------ATAT--ACCTATAATTCT-------------------TTTTT-GTATA--------CATTTC--------TAAATTAAAGAGAAC-------------------------AAATTCG----------------------------------ACCAACGCCTCGTTTTCTCACTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA--TTCGG----------------------GT----------------TGG---------GGGTAGTT----------------------------TTGCTGCCCTC-GTT-TTG-C--------------T-----CTC---TGATCTCATGGCATTCCATG-CA--CATTCAATCAGTTAGTTGTTATACCTCCAAGCGAGCACA--AGCATGGCCATTGACGATCAACA
droVir3 scaffold_12875:13728790-13728813 - -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA---ACATGACCAAGGTGGAGCCGCA
droMoj3 scaffold_6496:9151494-9151518 - G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA---TCATGACCGCAGTGGAGCCGCA
droGri2 scaffold_1396:26-50 + G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA---ACATGACCAACGTGGAGCCGCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CCCAC--TGAAGA---TG--TCATC-GGACCGGAA------------TTA------------------TTATAACACAATGAACAAAT--------------------------------------------------------------------------------G----------------------TCATTTAATTTATATTCAATAA--------T---------AT-ATACTGCTGTTTCAAAATAATAAAA-TTTGCTATCTAATGTGTAATG--TTCA------------------------------------------------------------------------------------------------------------------------------------------AAATG--TAC--------------------------ACAATATTTCT---------------------------TACACTGTACATCCAATGGCA-TTTGTAACGCA--GAGAGAATAACTCATTTG-ATTTCCATGCGCTGAGTTAATTGCCAGACCAACGCCTCGGTT-AAGAGA----------------------AA----------------TCG---------GGAGAGTG----------------------------ATTCTGATTTTGATT-TTC-C--------------------CTCCCATGATCTCTCAAAATTTGATCTAT--CTTTCAGTCA----CCGATCGTTCTCGCTGGAACTCGCA---TCATGACCGTAGACGAACCGCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACCGTAGACGAACCGC.1812.00200200000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTCGCTGGAACTCGC..........................1812.00200200000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTCA----CCGATCGTTCTCGCTGG.................................2312.00200200000000000000
................................................................................................................................................................................................................................................................................TGTGTAATG--TTCA------------------------------------------------------------------------------------------------------------------------------------------AAA..............................................................................................................................................................................................................................................................................................................................................................................................................1611.00100000001000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATTTG-ATTTCCATGCGCTGAGT................................................................................................................................................................................................................................................................2411.00100000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCAGACCAACGCCTCGGTT-AAGA..................................................................................................................................................................................................................................2511.00100000010000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-TTTGTAACGCA--GAGAGAATAACTCA......................................................................................................................................................................................................................................................................................2611.00100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAACGCCTCGGTT-AAGAGA----------------------AA----------------TCG---------GGA.........................................................................................................................................................................2811.00100000001000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTCGCA---TCATGACCG.............1811.00110000000000000000
..........AGA---TG--TCATC-GGACCGGAA------------TTA------------------TTATA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATTTG-ATTTCCATGCGCTT...................................................................................................................................................................................................................................................................2211.00100000000010000000
....................................................................................................................................................................................................................................................TTCAAAATAATAAAA-TTTGCTATC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000001000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCA----CCGATCGTTCTCGCTGGAACT.............................2611.00100100000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAT--CTTTCAGTCA----CCGATCGTTCT.......................................2411.00100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-ATTTCCATGCGCTGAGTTAAT............................................................................................................................................................................................................................................................2311.00100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGACCGTAGACGAACCG..1811.00110000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTCGCA---TCATGACCGTA...........2011.00100000100000000000
..............................................................................................................................................................................................................................................................TAAAA-TTTGCTATCTAATGTGTAATG--TT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000000001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-AAGAGA----------------------AA----------------TCG---------GGAGAGTG----------------------------ATTCTGA.................................................................................................................................2711.00100100000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---------------------------TACACTGTACATCCAATGGCA-TTTGT............................................................................................................................................................................................................................................................................................................2711.00100000000001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-AAGAGA----------------------AA----------------TCG---------GGAGAGTG----------------------------ATTC....................................................................................................................................2411.00100000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTCGCTGGAACTCGCA---TCATGACCGTA...........3011.00100000000000001000
droSec2
CCCAC--TGAAGA---TG--TCATC-GGATCAGAA------------CTA------------------TTATAAAACAATGAACAAAT--------------------------------------------------------------------------------G--------TAGATCAGTTTT-GTCATTTAATTTATATTCAATAA--------T---------AT-ATACTGCTGTTTCAAACGAATAAAA-TTTGTTATCTAATGTGTAATG--TTCA------------------------------------------------------------------------------------------------------------------------------------------AAATG--TAC--------------------------ACAATATTTCT---------------------------TACACTGTACATCCAATGGCA-TTTGTAACGCA--GAGAGAATAACTCACTTG-ATTTCCATGCGCTGAGTTAATTACCAGACCAACGCCTCGGTT-AAGAGA----------------------AA----------------TCG---------GGAGAGTG----------------------------ATTCTGATTTTGATT-TTC-C--------------------CTCCCAAGATCTCTCCAAATTTGATCTAT--CTTTCAGTCA----CCGATCGTTCTCGCTGGAACTCGCA---TCATGACCGTAGACGAACCGCASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................................................................TGAACAAAT--------------------------------------------------------------------------------G--------TAGATCAGTTTT-GT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.5010010
dm3
CCCAC--TGAAGA---AGGATCATC-GGATCCGAA------------TTA------------------TTATAACACAATGAACAAAT--------------------------------------------------------------------------------G--------TAGATCAGTTTT-GTCATTTAATTTATATTCAATAA--------TAATA-ATAAAT-ATACTGCTGTTTGAAACGAATAAAAGTTTACTATTTAATGTGTAATG--CTCA------------------------------------------------------------------------------------------------------------------------------------------AAATG--TAC--------------------------ACTATACTTTT---------------------------TACACTGTACATCCAATGGCA-TTTGTAACGCA--GAGAGAATAACTCATTTG-ATTTCCATGCACTAACTTAATTACCAGACCAACGCCTCGGTT-AAGAGA----------------------AA----------------TCG---------GGAGAGTG----------------------------ATTCTGATTTTGATT-TTC-C--------------------CTCCCATGATCTCTCCAAATTTGATCCAT--CTTTCAGTCA----CCGATCGTTCTCGCTGGAACTCGCA---TCATGACCGTGGACGAACCGCASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGACCGTGGACGAACCG..1815.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001002000000000000000000000100000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---TCATGACCGTGGACGAA.....1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000200000000000000000000000000000000000
....................................................................................................................................................................................................................A--------TAATA-ATAAAT-ATACTGCTGTTTGAAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2912.0020000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCGCA---TCATGACCGTGGACG.......2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCACTAACTTAATTACCAGACCAA.................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-AAGAGA----------------------AA----------------TCG---------GGAGAGTG----------------------------ATTC....................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCGCA---TCATGACCGTGG..........1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCGCA---TCATGACCGTG...........1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCGCA---TCATGACCGTG...........1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
.................................................................................AACAAAT--------------------------------------------------------------------------------G--------TAGATCAGTTTT-GTCAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATCCAATGGCA-TTTGTAAC.........................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---TCATGACCGTGGACGA......1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTGGAACTCGCA---TCATGACCGTA...........2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---TCATGACCGTGGACGAACC...2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGTTCTCGCTGGAACTCGCA---TCA...................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGACCGTGGACGAACCGC.1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCA----CCGATCGTTCTCGCT...................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................TAAAT-ATACTGCTGTTTGAAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---TCATGACCGTGGACGAACCG..2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
...................................................................................................................................................................................................................................ATAAAT-ATACTGCTGTTTGAAACGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGATCCAT--CTTTCAGTCA----CC................................................2311.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA---TCATGACCGTGGACGAACCG..2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGTTCTCGCTGGAACT.............................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCA----CCGATCGTTCTCGCTGGAAC..............................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---TCATGACCGTGGACGAACCGCA2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGTTCTCGCTGGAACTCGCA---......................2211.0010000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...AC--TGAAGA---AGGATCATC-GG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GTCA-------------------TC-GGA-CAGAA------------TAA------------------TTATAGCAAGAGGAGCG-AT--------------------------------------------------------------------------------G--------TAACTCAGTTTT-GTAATGCTATTTAAATACCATAA--------A---------AC-ACACTGTT--TTTAAGCGAATAAAA-ATTGTAA-----------------TCA------------------------------------------------------------------------------------------------------------------------------------------AAACT--TAG--------------------------GCAATATTTCT---------------------------TACACTGTACATCCAATGGCA-TTTGTAACGCA--GAGAGCATAATTCATTTG-ATTTCCATGCGTTGACTTAATTACCAGACCAACGCCTCGGTT-AAGAGC----------------------AA----------------ATG---------GGAGAGAG----------------------------ATTCTGATTTTGAT---------------------------CACCCATGATCTCTCCAAATTTGATATAT--CTTTCAGTCA----CCGATCGTTCTCGCTGGAACTCGCA---TCATGACCGCCGACGAACCGCASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
C-------GAAGC---TG--TCATC-GAATCAGAA------------TT---------------------------------------------------------------------------------------------------------------------------------AACTCAGTTTT-GTACTCTTATTTAAATACAATAA--------A---------AT-AAA--GTT--TTTAA-------------------------------------C------------------------------------------------------------------------------------------------------------------------------------------AAATG--TAA--------------------------GCAATATTTCT---------------------------TGCACTGTACATCCAATGGCC-TTTGTAATGCA--GAGAGAATAATTCATTTG-ATTTCCATGCGTCGACTTAATTACCAGACCAACGCCTCGGTT-AAGAGC----------------------AA----------------GTG---------GCAGAGAG----------------------------ATTCTAATTTTGATT-TTTCCCTCCCTTGATCAATCATGATCTCTCATGATCTCTCCAAATTTGATCTAT--CTTTCAGTCA----CCGCTCGTGTTCGCTGGAACTCGCA---TCATGACCGTAGAGGAACCGCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
ATCAT--TGGAGA---TG--TCATC-CGATCAA-------------TTTATCATCACAAAGAA-----------------------------TTTGG----------------------------------------------------------CAAAATTAAG--------------------TGTA-TTTTTATTATTATTTCTGAAAAAAATATGAA-----------------------------------------------------------A-AATAA--------------------AAGTTATATTAGTTTTTAACTATCTG-----------CGATTCTTATCTTT--------------------------------------ATTTTATAGACAAAAAA---ATATGAC--AAACG--TAT--------------------------AAAACTTTATT---------------------------TTCAGTGTACCTCAAATATAATTTTGTAACAAA--GAGATGATGATACA----------TATGCGGTAACTTAGTTACCAGACCAACGCCTCTGCG--AGAGAGA--------------------TA----------------TCG---------TTAAAGAG----------------------------ATTCAAATTCTGATT-TTCGC--------------------CTCTTATGATCTCTTCAGATTCGGTTCTA--GTTTCAGTCA----CCGATCGTTCTTGCTGGAATCCACA---TCATGACCGTAGACGAACCGCASizeHit CountTotal NormTotal
No Reads
droBia1
ATCCC--TAAGGA---TG--TCATC-TAATCAGC-------------C----------TGGAAAAAAG-------------------AATTCTATTATGGAAA-AGCGTCTT-------CTCTGTGTCATATTTGGA----TGTTATTATAAG--CAATAAAAACTGTG--------TTAAACTGTTTTTGA--TATTATTATTTCTCGTCAAAATATTAC-----------------------------------------------------------A-AATTA--------------------AA-------TAACCTATAAATATCAA-----------GGAGTTTTACATTTACTCTCAAA--------------------------------------------TAATA-----T----------TAA-------------------------ACGAAAATTATT---------------------------CGGTCTGTTTACCAAATGGTTTTTTGCAATAAA--GAGAAAATGGTTT--TTGAATAGGGTTGTGCTATATTAATTACCAGACCAACGCCTCAGAG--AGAAAAG--------------------AA----------------TCG---------GGCAAGAGAGGCA---ACGCCAGCTGGAAATC------TCTGATTCTGAT--------------------------------ACGATCTCTTTATATTTGGATCTA--CTTTCAGTCA----CCGATCATTCTCGCTAGAACTCACA---TCATGACCGTAGACGAGCCGCASizeHit CountTotal NormTotal
No Reads
droTak1
GTCAC--AAAGGA---TA--TC----CAATCTA-------------TTTATCATCTCAAGGATG--------------------------------------------TTTA-------TG-TGC--------TGGA----TGTTATAATTAA--CAATAAATACTATT--------TTTAACAGTTACAAG--TATTGT--------------------------------------------------------GTA-TTTCTTATCAATAGGATAATA-ATTCA--------------------AA-------AATGCTAT-------------------------------TTTTCTCTTAAA--------------------------------------------TAAAA-----------------------------------------------------------------------------------TGTTTGACACATTAATAAGAATTTTGTAATAAAGAGAGAGAATGATTTATAA--TATTCGATACGTTGATTTAATTACCAGACCAACGCCTCACCTAAAGAGATA--------------------TA----------------TCG---------GAAGAGAGAGACACA-ACGGTAGCTGGAAATC------TCCGAATCTAATA-TTC-C--------------------CTCGTGTGATCTCTTTAAATTTGTATCTA--CTTTCAGTCA----CCGATCATTCTCGCTAGAATTCACA---CCATGACCGTAGACGAACCGCASizeHit CountTotal NormTotal
No Reads
droEle1
ATCAC--TGAAGA---TG--TCATC-CGCTCGA-------------TTTGTTAACACAAGGAGAAATAATATAACAAAATGCTA---AGCTTTTTAATGAAAAAGGTGCCTT-------CT-TGTAGAATATTTTAA----TGTTTTAATAAAACCAAAAA--ACAATGCTTTTACTTTTTACTGTT----------------------------------------AAAAA-------------------------AAATATA----------------------------------TGTGTT----------------------------------------------------------------------------------------------------------------------ACAAAATTAATAC--------------------------ACAATTTTTTTTGGAAACCTTTGAATCAAATTTTGTTTTTTTTTATT-TTACAATGGAATTTGATAATTAA--GAGCGAATAATTTATATG-ATTTCCATTCGGCAACTTAATT----TGCCAACGCCTCAGTG--AGAGAAA--------------------TG----------------TCG---------AGAAAGAGAGATA---------TCTGGAGATCTCTAATTCTGAGTCTGTTT-CTC-C--------------------CCCAGGCGATCTCTTTAAATTTTGTTTTG--TATTTAGTCT----CCGATCGTTCTCGCTAGAACTCACA---TCATGACCGTAGAAGAGCCGCASizeHit CountTotal NormTotal
No Reads
droRho1
CACAC--T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCT---------------------------TTCTCTGTG-----GATGGTATTTTGTAATA---------AATGATTTATATG-TTTTCCATGCGTTAACTTAATTACCAGACCAACGCCTCACTG--AGAGAAA--------------------TA----------------TCG---------CTAAAGAGAGGGA-------------------------GCTGATTCTGATT-TTC-C--------------------CCCTAGCGATCTCTTTTAATTTTATTAAG--CATTCAGTCA----CCGATCGTTCTCGCTAGAATTCACA---TCATGACCGTAGACGAGCCGCASizeHit CountTotal NormTotal
No Reads
droFic1
ACAAC----AAGA---TG--TCATA-CTACTGGGA------------T----ACCACTTCTACAATAA-------------------AC------TCTTTAAA-CCCATTT----------------------------------------------------------------------------TA-TTTTAGTTATTTTAAAACAATAA--------A---------ATCATA--T----------------------------TTAATTTAA-ATGG-TAAAAAAGGCGTTTAAAT-TATATACCTAT-----------------TTATTTAAATTATAA----------------------GAATAAATGGGAAAATGTCAAAAAATATAAATATGTTTTAGTATGT---AGTTTTAAAATTTGGCCATCTTATACATA-AATCAACAATTAAAGAACATATTTTT---------------------------TTCTCTGTAAATCAAATGGAATTTTGTAATA----GTGAGAATAATTTATATG-TTTTGCATGCGTTAACTTAATTACCAGACCAACGCCTCATAG-AAGAGACA--------------------AA----------------TCG---------GAAAAGAGAGGTATCATCGGTAGCTGGAGAAC------TCAGATTCTAATT-TTC-C--------------------CTCGAATGATCTCTTTAGATTTGGTT-TA--CTTTCAGTCG----CCGATCGCTCTCGCTAGAGTTCACA---TCATGACCGTAGACGAGCCGCASizeHit CountTotal NormTotal
No Reads
droKik1
GCCAG--CGAAGA---TG--TCATA-CGATCCACACATTAACCTGATTGATCATCACATGGAGAGAAA-------------------AAT-ATTTAA----------------------------------------------------------CGAAAATTGA-----------------TAGCTTT-TTCCTGTCACTTTTTTTGAATAA--------A---------AT-ATA--T----------------------------TTTATATAT-TTA--TTAAAAAGGTAT---------------------------TTAAT-------------------------------TTTCTTAAAAAGATT----------------AATTAC-AATTTAAGTAAGAAAGA---AATTTAAAA--ACA--AAT-------ATAAACCCAACAAGAAGAGCGGAAA--------------------------------TTCTCCGTGCATCGTTTGA-ATTTTGTAATCGA--GAG----TAATTTAAATA-TTTTCGATGTCTTAACTTAATTACTCGACCAACGCCTCTGCG--AGAAACACACACAACACACGAGAGAATTAGAGAAACACTGAGAATCTGCCCAGAGCAAGAGAAAA---------------------ATC------TCT------GATT-TTC-T--------------A-----CATTTCCGATCTCTTTGAA-TCGATTTCG--CTTTCAGTTG----CCGCTCGTTCTCCAAAGAACTCACATCGCCATGACCGTCGACGAGCCAGASizeHit CountTotal NormTotal
No Reads
droAna3
ATCAC--TAGGGG---CG--CCGGA-AAATCATAACAATCA-------CATCACCACACGGAGGAAAA-------------------AC------TATGAAAA-TGGGTCAATAATTGGATACATATAATATATGGAAGAAGTTTAAAGTT--GCCAAAAGTTAA--------------------------------------TATTTA--------TTAAAAATA-AAAAAG-AGATTATTATT-----------------------------------------------------------TCCAACTAC-----------------CGGCTTTAATTTTAG----------------------GAGTTT----------------GATTATTAATTTGTGAAAGAAAGT---GTTTCTATAAAATCAC---------------------------------TACCTTA---------------------------TTTTCTGTGCATCCAATGGAATTTCGTAATT--------------------AA-ATTCTTGTCCATTAGCTGGAGAGCCAGTCGGAGGCTCCCCTA-GAGAAA----------------------AAGAGAA----------TATGT-------CAGAGAGTG---------------------ATC------TAT------AATTTTTC-C--------------------CACCCAAGATCTCTTG-AATTAGTTTTCG--CTTTCAGTCA----CTATTC---------AGAATTCACACCACAATGACCGTAGAAGAGCCGCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................................................................................................CAATAATTGGATACATATAATATATGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001010000
droBip1
CCATCATATGGGC---TG--CCGGA-GAATCATCACAACCA-------CATCACCACACAGTGAAAAG-------------------TC------TCAGAAAA-TGGGTCATTAATTGGATACA---------TGGAAGAATCTTAAAGTT--GCCAAAAGTTAA--------------------------------------TATTTA--------TTAAAAATA-AAAAA-------------------------AAATTTA----------------------------------TGAAATGCCAAGTACTGTCAATTTTTAA----------------------------------------------------------------------------------------------------GTCT--TG-------------------------------GGCTT-----------------------------TTTTCTGTGTA-CTAATGGAATTTCGTAATT--------------------AA-ATTCTTTCGCATTAGCTGGAGAGCCAGGCGGAGACTCCCCTA-GAGAAT----------------------AAGAGAA----------CCTGT-------CAGAGAGTG---------------------ATC------TAT------AATTTTTC-C--------------------CACCCAAGATCTCTTG-AATTAGTTTTCG--CTTTCAGTCA----CGATT---------TAGAATTCATAACACAATGACCGTTGAAGAGCCGCASizeHit CountTotal NormTotal
No Reads
dp5
TT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCACGCGCCTAATTAATTACCAGACCAACGCCTCACCA--CACGA----------------------GA----------------G-------------------AGGCACAA--------------TC----TCTCGCTCTCTGGTT-CTC-T--------------------TTTC--CGTTCGATTCACATTCTCTG-GCCATGTTCAGTCAGTCAGCGGGCA---GCAGTAGACAGCACA---ACATGGGCATGGACGAGCCGCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGACAGCACA---ACATGGG...............1911.0010100000000
droPer2
TT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCACGCGCCTAATTAATTACCAGACCAACGCCTCACCA--CACGA----------------------GA----------------G-------------------AGGCACAA--------------TC----TCTCGCTCTCTGGTT-CTC-T--------------------TTTC--CGTTCGATTCACATTCTCTG-GCCATGTTCAGTCAGTCAGCGGGCA---GCAGTAGACAGCACA---ACATGGGCATGGACGAGCCGCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTAGACAGCACA---ACATG.................2011.001010000
droWil2
TGTGA--G-CAGATAAATG-CTGTACGAATCTGC-------------C----------TAGATATATG----------------------------------------------------TACATAT--------------------ATAT--ACCTATAATTCT-------------------TTTTT-GTATA--------CATTTC--------TAAATTAAAGAGAAC-------------------------AAATTCG----------------------------------ACCAACGCCTCGTTTTCTCACTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA--TTCGG----------------------GT----------------TGG---------GGGTAGTT----------------------------TTGCTGCCCTC-GTT-TTG-C--------------T-----CTC---TGATCTCATGGCATTCCATG-CA--CATTCAATCAGTTAGTTGTTATACCTCCAAGCGAGCACA--AGCATGGCCATTGACGATCAACASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........GATAAATG-CTGTACGAATCTGC-------------C----------TAGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00110000
droVir3
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA---ACATGACCAAGGTGGAGCCGCASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA---TCATGACCGCAGTGGAGCCGCASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---TCATGACCGCAGTGGAGCC...2011.001010000
droGri2
G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA---ACATGACCAACGTGGAGCCGCASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 01:31 PM