ID:dsi_14055 |
Coordinate:3r:17313237-17313386 + |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
intergenic
No Repeatable elements found
|
CATATTTACATTAATGAGCTTGTAAATATTGGGACGCATTGCCACGAAAAGTGAGTAAGAATTCTTTTTTATTCATTCCATTTATGTACATCCATCAGAATGGGAAAAAAATTCATGAGCCAGCACTTTTGGGTTCTTTGTAAACATTACAAAAATTAATTAAATTATGTCTGTTTCAATTAAATTTATTTGTTGTTTAATAAATCTCTCTCTCTCTCTCTCTTAACGGCTTACTCATTATCCTCAGTGT
**************************************************.((((((((((....))))))))))(((((((((((......)))..))))))))........((.(((((..........)))))..))((((((..(((((..((((((((((.......)))).)))))).....))))))))))).************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR553488 RT_0-2 hours eggs |
M053 female body |
SRR618934 dsim w501 ovaries |
SRR553485 Chicharo_3 day-old ovaries |
SRR553486 Makindu_3 day-old ovaries |
SRR553487 NRT_0-2 hours eggs |
|---|---|---|---|---|---|---|---|---|---|---|---|
| ....................TGTAAATATTGGGACGCATTGCCACGA........................................................................................................................................................................................................... | 27 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| ......................................................................................................................GCCAGCACGTTTGGGT.................................................................................................................... | 16 | 1 | 3 | 1.00 | 3 | 3 | 0 | 0 | 0 | 0 | 0 |
| ....................................................................................AGTACATCCATCAGAAT..................................................................................................................................................... | 17 | 1 | 3 | 0.33 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| .................................................................................................................................................................................................TGTTTAACAAATCTCTATCT..................................... | 20 | 2 | 3 | 0.33 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
| ...................................................................TTTAGCCATTCCATGTATGTA.................................................................................................................................................................. | 21 | 3 | 6 | 0.17 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| .......................................................................................................................CCAGCACGTTTGGGT.................................................................................................................... | 15 | 1 | 9 | 0.11 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ............................................................................................................................................................................................................TCAGTCTCTCTCTCTCTCCTAA........................ | 22 | 3 | 20 | 0.10 | 2 | 0 | 1 | 0 | 0 | 1 | 0 |
| ................................................................................................................................................................TACATTATGTCTGTTTTGATT..................................................................... | 21 | 3 | 13 | 0.08 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
| ...............................................................................................................................................................................TGAATTAAATTTTTTTGTCGTT..................................................... | 22 | 3 | 16 | 0.06 | 1 | 0 | 0 | 0 | 0 | 1 | 0 |
| ..........................................................................ATTCCATGTATGTACA................................................................................................................................................................ | 16 | 1 | 16 | 0.06 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| .......................................................TAAGAATCCTTTTTTA................................................................................................................................................................................... | 16 | 1 | 16 | 0.06 | 1 | 0 | 0 | 0 | 0 | 0 | 1 |
|
GTATAAATGTAATTACTCGAACATTTATAACCCTGCGTAACGGTGCTTTTCACTCATTCTTAAGAAAAAATAAGTAAGGTAAATACATGTAGGTAGTCTTACCCTTTTTTTAAGTACTCGGTCGTGAAAACCCAAGAAACATTTGTAATGTTTTTAATTAATTTAATACAGACAAAGTTAATTTAAATAAACAACAAATTATTTAGAGAGAGAGAGAGAGAGAATTGCCGAATGAGTAATAGGAGTCACA
**************************************************.((((((((((....))))))))))(((((((((((......)))..))))))))........((.(((((..........)))))..))((((((..(((((..((((((((((.......)))).)))))).....))))))))))).************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR553487 NRT_0-2 hours eggs |
SRR553486 Makindu_3 day-old ovaries |
M025 embryo |
|---|---|---|---|---|---|---|---|---|
| .................................................................AGAAATAAGTAAGGGAAAAACAT.................................................................................................................................................................. | 23 | 3 | 3 | 0.33 | 1 | 1 | 0 | 0 |
| ......................................AACGGTGCTTGTCATTCA.................................................................................................................................................................................................. | 18 | 2 | 6 | 0.17 | 1 | 0 | 1 | 0 |
| .........................................................................GTAAGGTACATACATGGAA.............................................................................................................................................................. | 19 | 3 | 20 | 0.10 | 2 | 0 | 0 | 2 |
Generated: 04/23/2015 at 04:36 PM