ID:

dsi_1405

 Coordinate:

2r:2267459-2267623 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-8.6 -8.5 -8.2

Flybase annnotation

five_prime_UTR [2r_2267403_2267664_-]; exon [2r_2267403_2267664_-]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+

Sense Strand Reads

---------################################################################################################################################################################################################################################################################
TATATCGAAAACAGAAATTTTCCGATTTGATTAAATACAAAACGTTTAAGGTGAAGACTTTGGAAATAAGATTATCTCGATTTCATTGATATTTACTTACTTTTCCTAAAGGTCCTACCAAGGGCTATACTTCCTAATACGTTAAATAACATTTGTAGTATTTTTTTTTATAAATATTTATAATAAAATTATTTTTGAACTAAAAAAAATTACAGTAAATGTCTGCAAGTACAGCCTATAAGTAGAATTTTATGCTCATAACGTT
**************************************************.......(((((((((((((...((.(((((...))))).))...))))..))))).)))).********************************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M024
male body		 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M053
female body
 O002
Head
 SRR902009
testis
..........................................CGTTTAAGGTGAAGACTTTGGAAA....................................................................................................................................................................................................... 24 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0
..............................................TAAGGTGAAGACTTTGGAAATAAGA.................................................................................................................................................................................................. 25 0 1 4.00 4 0 3 0 0 0 1 0 0 0 0
..................................................GTGAAGACTTTGGAAATAAGAT................................................................................................................................................................................................. 22 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0
........................................AACGTTTAAGGTGAAGAC............................................................................................................................................................................................................... 18 0 1 3.00 3 1 0 0 2 0 0 0 0 0 0
......................................................AGACTTTGGAAATAAGAT................................................................................................................................................................................................. 18 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0
..........................................................................................................................................................................TAAATATTTATCATAAAATTATGTCTGA................................................................... 28 3 1 2.00 2 2 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TAAATATTTATCATAAAATTATGTCTG.................................................................... 27 3 1 2.00 2 1 0 0 0 1 0 0 0 0 0
.............................................TTAAGGTGAAGACTTTGGAAATAAGA.................................................................................................................................................................................................. 26 0 1 2.00 2 0 1 0 0 0 0 0 1 0 0
........................................AACGTTTAAGGTGAAGACTTTGGAAA....................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................TATACTTCCTATTACGTTAAATAACA.................................................................................................................. 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TGCAAGTACAGCCTATAAGTAGAATT................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..........................................CGTTTAAGGTGAAGACTT............................................................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................TCATTGATATTTACTTACTTTTCCTAAAGG......................................................................................................................................................... 30 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
............................................TTTAAGGTGAAGACTTTGGAAATAAGA.................................................................................................................................................................................................. 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
......................................................AGACTTTGGAAATAAGATTATCT............................................................................................................................................................................................ 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.......................................................GACTTTGGAAATAAGATTATCTC........................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................TACAGCCTATAAGTAGAATTTTATGC.......... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
......................................................AGACTTTGGAAATAAGATTATCTCGAT........................................................................................................................................................................................ 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................TATAAGTAGAATTTTATGCT......... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...........................................GTTTAAGGTGAAGACTTTGGA......................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................ATAAATATTTATCATAAAATTATGTCTG.................................................................... 28 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................ACGTTTAAGGTGAAGACT.............................................................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................AGACTTTGGAAATAAGATTATC............................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0
...................................................................................................................................................................TATTTTATAAAAATTTACAATAAAA............................................................................. 25 3 4 0.25 1 0 0 0 0 0 1 0 0 0 0
............................GATTAAATACAAGACGTC........................................................................................................................................................................................................................... 18 2 10 0.10 1 0 0 0 0 0 0 1 0 0 0
......................................................AGACTTTGGAAGTAA.................................................................................................................................................................................................... 15 1 11 0.09 1 0 0 1 0 0 0 0 0 0 0
.............................................................................................TACTTCCTTGTCCGAAAGG......................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0
.....................................................................................................................................................................................................AACTAAAAAAATCTACAG.................................................. 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

ATATAGCTTTTGTCTTTAAAAGGCTAAACTAATTTATGTTTTGCAAATTCCACTTCTGAAACCTTTATTCTAATAGAGCTAAAGTAACTATAAATGAATGAAAAGGATTTCCAGGATGGTTCCCGATATGAAGGATTATGCAATTTATTGTAAACATCATAAAAAAAAATATTTATAAATATTATTTTAATAAAAACTTGATTTTTTTTAATGTCATTTACAGACGTTCATGTCGGATATTCATCTTAAAATACGAGTATTGCAA
*********************************************************************************************************************************************************.......(((((((((((((...((.(((((...))))).))...))))..))))).)))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 O001
Testis
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
................................................................................................................................................................................................................................AGCTCATGCCGGATATTCAT..................... 20 3 1 2.00 2 2 0 0 0 0 0
....................................................................................................................TGGTTCCCGATATGAAGGATT................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0
......................................................................TAATAGAGCTAGAGGAACCATA............................................................................................................................................................................. 22 3 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................GATTATGCAATTTATCG................................................................................................................... 17 1 3 0.33 1 0 0 0 1 0 0
........................................................................................................GGGTTTCCAGGATAGTGCCCGA........................................................................................................................................... 22 3 4 0.25 1 0 0 1 0 0 0
...........................................................................................................................CGATATGGAGGATCAT.............................................................................................................................. 16 2 11 0.09 1 0 0 1 0 0 0
...................................................................................................................ATGGTTCCTGATATGAT..................................................................................................................................... 17 2 11 0.09 1 1 0 0 0 0 0
................................................................................................................ATGCTGGTTCCCGATA......................................................................................................................................... 16 2 13 0.08 1 0 0 0 0 0 1
...........................................................................GAGCTAAAGTAACTATTC............................................................................................................................................................................ 18 2 13 0.08 1 0 0 0 0 1 0
........................................................................ATAGAGCTAAGGTAA.................................................................................................................................................................................. 15 1 18 0.06 1 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:2267409-2267673 - dsi_1405 TATA------TCGAAAACAGAAATTTTCCGATTTGATTAAATACAAAACGTTTAA-GGTGAAGACTTTGGAAATAAGATTATCTCGATTTCATTGATATTTA-------------------------------C-------------TTACT-T-TTCCTAAAGGTCCTACCAAGGGCTATACTTCCTAATACGTTAAATAACATTTGTAGT--------------------------------------------------------A----------------TTTTTTTTTATAAATATTTATAATAAAATTATTTTTG-A--A---CTAAAA---------------------------AAAAT-TACAGTAAATGTCTGCAAGTACAGCCTATAAGTAGA-----ATTTTATGCTCATAACGTT-
droSec2 scaffold_59:152887-153151 - TATA------TCGAAAACAGAAATTTTCCGATTTGATTAAATACAAAACGTTTAA-GGTGAAGACTTTGCAAATAAGATTATCTCGATTTCATTGATATTTA-------------------------------C-------------TTACT-T-TTCCTAAAGGTCCTACCAAGGGCTATACTTCCTATTGCGTTAAATTACATTTGTAGT--------------------------------------------------------A----------------TTTTTTTTTATAAATATTTATAATAAAATTATTTTTG-A--A---CTAAAA---------------------------AAAAT-TACAGTAAATGTCTGCAAGTACAGCCTATAAGTAGA-----ATTTTATGCTCATAACGTT-
dm3 chr2R:1250341-1250617 - TATA------TCGAGAGCAGAAAATTTCCGATTTGATTAAATACAAAACGTTTTA-GGTGAAGATTTCGCAAATAAGTTTAAGTCGATTTCATTGATAT----------------------------ATTAAACTAAGTA--------TA--GTTTTCCA-AAAGTCCTACCAAGGACTATACTTCTTACTACGTTAACTTACATTTGTAGT--------------------------------------------------------AATCACCG------------TTTTAAATAATTATATATAATAAAATTATTTTTCTA--A---CTAAAA---------------------------AACAT-TACAGTAAATGTTTGCAAGTACAGCCTATACGTAGA-----ATTTTATGCACAAAACCTT-
droEre2 scaffold_4929:21290676-21290962 + TATATTTATATAGAAAACAGAAAATTTCCGATTTGATTATATACAAAGCG--------TGAAGATTTCGTAAATAAATTTAGCTCGATTTCATTGTTATTTAT------------------------GTTAAAA------TATCTAGTTA--GTTT-CCC------------AAAGTCCATACTTCTTTTTACCTTGAGTTACATTTTAAGT--------------------------------------------------------AATCAACGTTAACTCAATTTTTTTTAAAACAAACTTATAATGAACTAGTGTTTGTA--ACAACGAAAT---------------------------AAAATCTACCGTAAATGTATGCAAGTACCGCCTAAACTGAGA-----AATTTATGATCATAACGCTT
droYak3 v2_chr2L_random_028:1572050-1572305 - TATA------TAGAAATCAGAAAACTTCCGATGTGATTATATACAAAGAGTATAAGGGTGAAGATTTCGCAAATAAATTTAGCTCGATTTGATTGTTATTTAC------------------------GTTAA-A------TATCTACTTACTGTTT-CCCAAAACTCCTACTGAAG-CCATACTT-----------AAGAAGTATTTGAAGT--------------------------------------------------------AATCAACGTT--------------GACTCAATATAC-------------------ATTATAACGAAAT----------------------------ATAT-TTCCGTAAATGTATGCAAGTACCGCATAAGCGGAGA-----AATTTGTGAATAAAGCGGT-
droEug1 scf7180000407687:682-744 - TTTT------TAAAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATATTTTTAAAAAAAATATTTTTA-A--A---AAAAAT---------------------------ATTTT-TAAAAAAAATATT----------------------------------------------T-
droBia1 scf7180000301380:12285-12377 - AAAA------ATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTACATATTTGTTTTTCCAGATAAAT-AATAGTAAAAATAATCAAGAATCGACCAACCGGCGAAAA--AATATTTGATTTCCACGTT-
droTak1 scf7180000415495:7957-8213 + TATA------TAGAAGATAGATAAATTTCTTTTTGCTCGTATACAGAGCGACTGAGGGTTGAGATATTACAATTCAATTTGGTTTGGTATAAAA------------------------------------------------------------------------ACTAAAGGAAACCGTAGTTCTATTTACAA--------ATTAAAAATATTATTGAC------------------------------------------------------------------------------TATAACTAGTGAAGTTGTTTTTA-A--A---TTAAACAATTTATTATATATTAATAACGATAAAAAAAT-TGCAGCCAATGGAAGCAACCATAATATAACCGGCAAAAACCAATCTATAT-TACTACGCT-
droEle1 scf7180000490474:25211-25353 + ACAT------TGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAAAACTTGTGTAATAAATTTTAAAACATAACAAAATTGATATTTATT----------------TATT------------TTCA-----------------TAACAGAATGAAAT---------------------------AAAAT-TACAACTTATTCATGCCACCATTGTCTTGCCGGCGAATCCAATTTTATGCTCCAGACGCG-
droRho1 scf7180000765896:3193-3338 - AACA------CATTGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAAAACTTGTGTAATTTATCTTAAAACATTACAAAAATTGTTTTTACA----------------TTTT------------TTTA-----------------TAGCAGAATGAAAT---------------------------AAAAT-TACAAGAAATTGATGCCAGCATTGTCCAACCGGCGAAAATAATTTTATGCTCAGCACGCG-
droFic1 scf7180000451688:20838-20938 - TGTT------TAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTGTT----------------TACT------------TTTA-----------------TAATAGAACAAAAT---------------------------AAAAT-TTCACTCAATTTATGCAAGCTTTGTCAAACCGGCACAAACAAATATATGTTCGGCACGGG-
droKik1 scf7180000302372:6222-6286 - TAAC------TTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATGT--------------------------------------------------------T----------------TATTTTTATGTATTTGCTCAAATAAAAATAATTTGAA-A--A---CTGAAA---------------------------AAAAT------------------------------------------------------------T-
droAna3 scaffold_13082:3312871-3313057 + TTTA-------------------------GATTTGGTTAAATTTAATAAATTA-----TGTATTATATTTAAATAAGATTAATTAATTATTTT---------CGTTTTCGCATTTTCTTGTTGTTGAATTAAATTCAATA--------AA--ATT---------------------------------------TTAAATAAATTTCTAAAA--------------------------------------------------------A----------------TTTATTTATTAATAAATTTTTAATATTAATATTTTAA-A--A---TTAATA---------------AA----------AAATT-TTAAAT--------------------------------------------------AAAT-
droBip1 scf7180000392126:26455-26561 + TTTC------TTGAAA-----------------------------------------------------------AGCTTACCCTGGTTTTAAAAACGCTT------------------------------------------------G--AAAT-ATT------------GAAATTTA-------------------------------T--------------------------------------------------------A----------------ATTTTTTTTATTAATATTCATATTATCAAAATTTCCC-G--C---CTATGA---------------------------AAAA----------------------------------------------------------CCAC-
droWil2 scf2_1100000004382:1059831-1059836 - TTTA------CC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TATA------TCGAAAACAGAAATTTTCCGATTTGATTAAATACAAAACGTTTAA-GGTGAAGACTTTGGAAATAAGATTATCTCGATTTCATTGATATTTA-------------------------------C-------------TTACT-T-TTCCTAAAGGTCCTACCAAGGGCTATACTTCCTAATACGTTAAATAACATTTGTAGT--------------------------------------------------------A----------------TTTTTTTTTATAAATATTTATAATAAAATTATTTTTG-A--A---CTAAAA---------------------------AAAAT-TACAGTAAATGTCTGCAAGTACAGCCTATAAGTAGA-----ATTTTATGCTCATAACGTT-SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................CGTTTAA-GGTGAAGACTTTGGAAA.....................................................................................................................................................................................................................................................................................................................................................................2415.00550000000000000000
....................................................TAA-GGTGAAGACTTTGGAAATAAGA................................................................................................................................................................................................................................................................................................................................................................2514.00400000030100000000
.........................................................GTGAAGACTTTGGAAATAAGAT...............................................................................................................................................................................................................................................................................................................................................................2213.00330000000000000000
..............................................AACGTTTAA-GGTGAAGAC.............................................................................................................................................................................................................................................................................................................................................................................1813.00312000000000000000
.............................................................AGACTTTGGAAATAAGAT...............................................................................................................................................................................................................................................................................................................................................................1812.00200000000002000000
...................................................TTAA-GGTGAAGACTTTGGAAATAAGA................................................................................................................................................................................................................................................................................................................................................................2612.00200010010000000000
..............................................AACGTTTAA-GGTGAAGACTTTGGAAA.....................................................................................................................................................................................................................................................................................................................................................................2611.00110000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................TGCAAGTACAGCCTATAAGTAGA-----ATT.................2611.00100000010000000000
................................................CGTTTAA-GGTGAAGACTT...........................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
.........................................................................................TCATTGATATTTA-------------------------------C-------------TTACT-T-TTCCTAAAGG.........................................................................................................................................................................................................................................................................3011.00100000010000000000
..................................................TTTAA-GGTGAAGACTTTGGAAATAAGA................................................................................................................................................................................................................................................................................................................................................................2711.00100000000010000000
.............................................................AGACTTTGGAAATAAGATTATCT..........................................................................................................................................................................................................................................................................................................................................................2311.00100000000001000000
..............................................................GACTTTGGAAATAAGATTATCTC.........................................................................................................................................................................................................................................................................................................................................................2311.00110000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................TACAGCCTATAAGTAGA-----ATTTTATGC...........2611.00100000010000000000
.............................................................AGACTTTGGAAATAAGATTATCTCGAT......................................................................................................................................................................................................................................................................................................................................................2711.00100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................................................TATAAGTAGA-----ATTTTATGCT..........2011.00100100000000000000
.................................................GTTTAA-GGTGAAGACTTTGGA.......................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
...............................................ACGTTTAA-GGTGAAGACT............................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
.............................................................AGACTTTGGAAATAAGATTATC...........................................................................................................................................................................................................................................................................................................................................................2211.00100000100000000000
droSec2
TATA------TCGAAAACAGAAATTTTCCGATTTGATTAAATACAAAACGTTTAA-GGTGAAGACTTTGCAAATAAGATTATCTCGATTTCATTGATATTTA-------------------------------C-------------TTACT-T-TTCCTAAAGGTCCTACCAAGGGCTATACTTCCTATTGCGTTAAATTACATTTGTAGT--------------------------------------------------------A----------------TTTTTTTTTATAAATATTTATAATAAAATTATTTTTG-A--A---CTAAAA---------------------------AAAAT-TACAGTAAATGTCTGCAAGTACAGCCTATAAGTAGA-----ATTTTATGCTCATAACGTT-SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........................................ATACAAAACGTTTAA-GGTGAAGACT............................................................................................................................................................................................................................................................................................................................................................................2511.0010001
........................................ATACAAAACGTTTAA-GGTGAA................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
.............................................................AGACTTTGCAAATAAGATTATCTCGAT......................................................................................................................................................................................................................................................................................................................................................2711.0010001
..............................................AACGTTTAA-GGTGAAGACTT...........................................................................................................................................................................................................................................................................................................................................................................2011.0010001
.........................................TACAAAACGTTTAA-GGTGAAGACTT...........................................................................................................................................................................................................................................................................................................................................................................2511.0010100
...........................................................................................................................................................TTCCTAAAGGTCCTACCAAGGGCTA..........................................................................................................................................................................................................................................................2511.0010001
..........................................................TGAAGACTTTGCAAATAA..................................................................................................................................................................................................................................................................................................................................................................1811.0010010
.......................................................................................................................................................................................................................................................................................................................................................................................AAATGTCTGCAAGTACAGCCTA.................................2211.0010010
........................................ATACAAAACGTTTAA-GGT...................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
dm3
TATA------TCGAGAGCAGAAAATTTCCGATTTGATTAAATACAAAACGTTTTA-GGTGAAGATTTCGCAAATAAGTTTAAGTCGATTTCATTGATAT----------------------------ATTAAACTAAGTA--------TA--GTTTTCCA-AAAGTCCTACCAAGGACTATACTTCTTACTACGTTAACTTACATTTGTAGT--------------------------------------------------------AATCACCG------------TTTTAAATAATTATATATAATAAAATTATTTTTCTA--A---CTAAAA---------------------------AACAT-TACAGTAAATGTTTGCAAGTACAGCCTATACGTAGA-----ATTTTATGCACAAAACCTT-SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........TCGAGAGCAGAAAATTTCCGA...............................................................................................................................................................................................................................................................................................................................................................................................................211328.00328000000000000000000000010000000000000130100120020014300000100000000000000000001000000000000000000000000000001000000100000000000000000000000001020307413002100000000000000000000000100000000101010000034000003100000002048100151310302510020000200000000000000000000000000000010052531824141800100001030002026030110001124001200011000300620100000
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..............................................AACGTTTTA-GGTGAAGATT............................................................................................................................................................................................................................................................................................................................................................................1915.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000100000000010000000000000000000000000000000000000010000000100000000000000000
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...............................................................ATTTCGCAAATAAGTTTAAGTCGATTT....................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
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.......................................AATACAAAACGTTTTA-GGTGAAGA..............................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000100000000000000000
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..............................................................................................................................................................................................TACGTTAACTTACATTTGTAGT--------------------------------------------------------AATC..............................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.....................................................TA-GGTGAAGATTTCGCAAATAAGTT...............................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................AGATTTCGCAAATAAGTT...............................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
................................................CGTTTTA-GGTGAAGATTT...........................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................TTTCCA-AAAGTCCTACCAAGGACTATAC.......................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................GATTAAATACAAAACGTTTTA-GGT...................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................AAGTCGATTTCATTGATAT----------------------------ATTAAAC........................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................TTTA-GGTGAAGATTTCGCAAATAAGT................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................GATTAAATACAAAACGTTTTA-G.....................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................TGTTTGCAAGTACAGCCTATA...............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................TAACTTACATTTGTAGT--------------------------------------------------------AATCACCG------------TT............................................................................................................................................2711.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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...............................................................................................................................................................................................................................................................................................................................................................................T-TACAGTAAATGTTTGCAAGT.........................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................ATTAAATACAAAACGTTTTA-GGTGAA................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
......................................AAATACAAAACGTTTTA-GGTGAAGATT............................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
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......................................................................................................................................................................CCTACCAAGGACTATACTTCTTAC................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................TCCTACCAAGGACTATACTTCTTACTACGT...........................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................CTTCTTACTACGTTAACTTA....................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................ATACTTCTTACTACGTTAACTTA....................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................AATAAGTTTAAGTCGATTTCA..................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.......................................................................................................................................................................CTACCAAGGACTATACTTCTTACTACA............................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................GCAAATAAGTTTAAGTCGATTTC...................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................A--------TA--GTTTTCCA-AAAGTCCTAC...................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................TCCTACCAAGGACTATACTTCTTAC................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................A-GGTGAAGATTTCGCAAATAAGTTTA.............................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
...............................................ACGTTTTA-GGTGAAGATTTCG.........................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
.......................................................................................................................................................................................................TTACATTTGTAGT--------------------------------------------------------AATCACCG------------TTTTAAA.......................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................A-GGTGAAGATTTCGCAAAT....................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........TCGAGAGCAGAAAATTTCCGATT.............................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000
..............................................AACGTTTTA-GGTGAAGATTTCA.........................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
.............................................................................................TGATAT----------------------------ATTAAACTAAGTA--------TA--......................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................CGTTTTA-GGTGAAGATTTCGCAAATA...................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
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..........................TCCGATTTGATTAAATACAAAACGT...........................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................TAAATACAAAACGTTTTA-GGTGAA................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................CAAGTACAGCCTATACGTAGA-----....................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
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.......................................AATACAAAACGTTTTA-GGTGAAGATT............................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
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......................................................................................................................................................................................................................................................................................................................................................................................TAAATGTTTGCAAGTACAGCCTATAC..............................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000
.........................................TACAAAACGTTTTA-GGTGAAGATT............................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
......................................................A-GGTGAAGATTTCGCAAA.....................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
..............................................AACGTTTTA-GGTGAAGATTT...........................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................ACAAAACGTTTTA-GGTGAA................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
...................................................TTTA-GGTGAAGATTTCGCA.......................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
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.................................................GTTTTA-GGTGAAGATTTCGCAAA.....................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
..................AGAAAATTTCCGATTTGATTAAATA...................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
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.....................................................................................................................................................................................................................................................................................................................AAAATTATTTTTCTA--A---CTAAAA---------------------------AAC................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................TGCAAGTACAGCCTATACGTAGA-----AT..................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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...............................................................................................................................................................................................................................................................................................................................TTCTA--A---CTAAAA---------------------------AACAT-TACAG........................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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........................................................................................................................................................................................................................................................................................................................................................................................................GCCTATACGTAGA-----ATTTTATGC...........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................GTTTTA-GGTGAAGATTT...........................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.............................................AAACGTTTTA-GGTGAAGATTTCGC........................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................................TACATTTGTAGT--------------------------------------------------------AATCACCG------------TTTTAAAA......................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................CAAAACGTTTTA-GGTGAAG...............................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
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.................................................................................................................................................................................................GTTAACTTACATTTGTAGT--------------------------------------------------------..................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................ACAAAACGTTTTA-GGTGA.................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................GTTTTA-GGTGAAGATTTCGCAAAT....................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
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......................................................................................................................................................................................................................................................................................................................................................................................TAAATGTTTGCAAGTACAGCCTA.................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
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.............................................................................................................................................................................................................................................................................................................................................................................................................TACGTAGA-----ATTTTATGCACAAAAC....2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................AACTTACATTTGTAGT--------------------------------------------------------AATCACCG------------T.............................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................ACAGCCTATACGTAGA-----ATTTTATG............2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................CCAAGGACTATACTTCTTACTACGTTAAC.......................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.................................................GTTTTA-GGTGAAGATTTCGCA.......................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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...............................................ACGTTTTA-GGTGAAGATTT...........................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
..............................................................................................................................................................................GGACTATACTTCTTACTACGTT..........................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................ACCAAGGACTATACTTCTTACTACGT...........................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................................................................................................................................................................................................................................................................................................................................................TTGCAAGTACAGCCTATACGTAGA-----AT..................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................TTTTA-GGTGAAGATTTCGCA.......................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
..........................................................................................CATTGATAT----------------------------ATTAAACTAAGT...................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................TAAAATTATTTTTCTA--A---CTAAAA---------------------------AAC................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................TACCAAGGACTATACTTCTTACTACGT...........................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TATATTTATATAGAAAACAGAAAATTTCCGATTTGATTATATACAAAGCG--------TGAAGATTTCGTAAATAAATTTAGCTCGATTTCATTGTTATTTAT------------------------GTTAAAA------TATCTAGTTA--GTTT-CCC------------AAAGTCCATACTTCTTTTTACCTTGAGTTACATTTTAAGT--------------------------------------------------------AATCAACGTTAACTCAATTTTTTTTAAAACAAACTTATAATGAACTAGTGTTTGTA--ACAACGAAAT---------------------------AAAATCTACCGTAAATGTATGCAAGTACCGCCTAAACTGAGA-----AATTTATGATCATAACGCTTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....................................................................................................TAT------------------------GTTAAAA------TATCTAGTTA--GTTT-C................................................................................................................................................................................................................................................................................2511.0011000000
..........................................................................................................................................................................................................................................................................................................AAACTTATAATGAACTAG..................................................................................................................1811.0010000010
.............................................AAGCG--------TGAAGATTTCGTAAATA...................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
...............................TTTGATTATATACAAAGCG--------TGAAG...............................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
...............................TTTGATTATATACAAAGCG--------TGAAGATTT...........................................................................................................................................................................................................................................................................................................................................................................2811.0010100000
.....................................................................................................................................A------TATCTAGTTA--GTTT-CCC------------AAAGTC............................................................................................................................................................................................................................................................2411.0010100000
...........................................................................AATTTAGCTCGATTTCATTGT..............................................................................................................................................................................................................................................................................................................................................2111.0010000010
..................................................................................................................................AAAA------TATCTAGTTA--GTTT-CCC------------..................................................................................................................................................................................................................................................................2111.0011000000
...........................................................................................................................................................................................................ATTTTAAGT--------------------------------------------------------AATCAACGTT........................................................................................................................................................1911.0011000000
...............................TTTGATTATATACAAAGCG--------TGAA................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100
.....................................................................................................................................A------TATCTAGTTA--GTTT-CCC------------AAAGTCCA..........................................................................................................................................................................................................................................................2611.0011000000
.............................GATTTGATTATATACAAAGCG--------TGAA................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
................................................................................................................................................TAGTTA--GTTT-CCC------------AAAGTC............................................................................................................................................................................................................................................................1911.0010010000
................................TTGATTATATACAAAGCG--------TGAAGATT............................................................................................................................................................................................................................................................................................................................................................................2611.0011000000
................................................................TTTCGTAAATAAATTTAGCTCGATTTCA..................................................................................................................................................................................................................................................................................................................................................2811.0010000100
.................................TGATTATATACAAAGCG--------TGAAG...............................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
droYak3
TATA------TAGAAATCAGAAAACTTCCGATGTGATTATATACAAAGAGTATAAGGGTGAAGATTTCGCAAATAAATTTAGCTCGATTTGATTGTTATTTAC------------------------GTTAA-A------TATCTACTTACTGTTT-CCCAAAACTCCTACTGAAG-CCATACTT-----------AAGAAGTATTTGAAGT--------------------------------------------------------AATCAACGTT--------------GACTCAATATAC-------------------ATTATAACGAAAT----------------------------ATAT-TTCCGTAAATGTATGCAAGTACCGCATAAGCGGAGA-----AATTTGTGAATAAAGCGGT-SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................................................................................................................................................................................................GAAGTATTTGAAGT--------------------------------------------------------AATCAAC...........................................................................................................................................................2111.00100000010000
....................................................................................................TAC------------------------GTTAA-A------TATCTACTTACTGTTT-CC...............................................................................................................................................................................................................................................................................2711.00101000000000
......................................................................................................................................................................................................................................................................................................................................ATAACGAAAT----------------------------ATAT-TTCCGT.......................................................2011.00101000000000
....................................................................................................................................................TACTGTTT-CCCAAAACTCCTA....................................................................................................................................................................................................................................................................2111.00101000000000
..........................................ACAAAGAGTATAAGGGTGAAG...............................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
............................................................................................................................................................................GAAG-CCATACTT-----------AAGAAGTATTTGAAGT--------------------------------------------------------AAT...............................................................................................................................................................3111.00100000000001
................................GTGATTATATACAAAGAGTATAAGGGT...................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
................................................................................................................................................................................................................................................................................................................................................................................................................GGAGA-----AATTTGTGAATAAAGCGGT-2411.00100000010000
........................................ATACAAAGAGTATAAGGGT...................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
...............ATCAGAAAACTTCCGATGTGATTA.......................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
.......................................TATACAAAGAGTATAAGGGTGAAG...............................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000
..........................................................................................................................................................................CTGAAG-CCATACTT-----------AAGAAGT...................................................................................................................................................................................................................................2111.00100100000000
..........................................................................................GATTGTTATTTAC------------------------GTTAA-A------T.................................................................................................................................................................................................................................................................................................2011.00101000000000
...............................................................................................................................................CTACTTACTGTTT-CCCAAAACT........................................................................................................................................................................................................................................................................2211.00100100000000
...............................................................................................................................................CTACTTACTGTTT-CCCAAAAC.........................................................................................................................................................................................................................................................................2111.00101000000000
............................................................................ATTTAGCTCGATTTGATTGTT.............................................................................................................................................................................................................................................................................................................................................2111.00100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................CATAAGCGGAGA-----AATTTGTGA...........2111.00100000010000
droEug1
TTTT------TAAAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATATTTTTAAAAAAAATATTTTTA-A--A---AAAAAT---------------------------ATTTT-TAAAAAAAATATT----------------------------------------------T-SizeHit CountTotal NormTotal
No Reads
droBia1
AAAA------ATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTACATATTTGTTTTTCCAGATAAAT-AATAGTAAAAATAATCAAGAATCGACCAACCGGCGAAAA--AATATTTGATTTCCACGTT-SizeHit CountTotal NormTotal
No Reads
droTak1
TATA------TAGAAGATAGATAAATTTCTTTTTGCTCGTATACAGAGCGACTGAGGGTTGAGATATTACAATTCAATTTGGTTTGGTATAAAA------------------------------------------------------------------------ACTAAAGGAAACCGTAGTTCTATTTACAA--------ATTAAAAATATTATTGAC------------------------------------------------------------------------------TATAACTAGTGAAGTTGTTTTTA-A--A---TTAAACAATTTATTATATATTAATAACGATAAAAAAAT-TGCAGCCAATGGAAGCAACCATAATATAACCGGCAAAAACCAATCTATAT-TACTACGCT-SizeHit CountTotal NormTotal
No Reads
droEle1
ACAT------TGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAAAACTTGTGTAATAAATTTTAAAACATAACAAAATTGATATTTATT----------------TATT------------TTCA-----------------TAACAGAATGAAAT---------------------------AAAAT-TACAACTTATTCATGCCACCATTGTCTTGCCGGCGAATCCAATTTTATGCTCCAGACGCG-SizeHit CountTotal NormTotal
No Reads
droRho1
AACA------CATTGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAAAACTTGTGTAATTTATCTTAAAACATTACAAAAATTGTTTTTACA----------------TTTT------------TTTA-----------------TAGCAGAATGAAAT---------------------------AAAAT-TACAAGAAATTGATGCCAGCATTGTCCAACCGGCGAAAATAATTTTATGCTCAGCACGCG-SizeHit CountTotal NormTotal
No Reads
droFic1
TGTT------TAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTGTT----------------TACT------------TTTA-----------------TAATAGAACAAAAT---------------------------AAAAT-TTCACTCAATTTATGCAAGCTTTGTCAAACCGGCACAAACAAATATATGTTCGGCACGGG-SizeHit CountTotal NormTotal
No Reads
droKik1
TAAC------TTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATGT--------------------------------------------------------T----------------TATTTTTATGTATTTGCTCAAATAAAAATAATTTGAA-A--A---CTGAAA---------------------------AAAAT------------------------------------------------------------T-SizeHit CountTotal NormTotal
No Reads
droAna3
TTTA-------------------------GATTTGGTTAAATTTAATAAATTA-----TGTATTATATTTAAATAAGATTAATTAATTATTTT---------CGTTTTCGCATTTTCTTGTTGTTGAATTAAATTCAATA--------AA--ATT---------------------------------------TTAAATAAATTTCTAAAA--------------------------------------------------------A----------------TTTATTTATTAATAAATTTTTAATATTAATATTTTAA-A--A---TTAATA---------------AA----------AAATT-TTAAAT--------------------------------------------------AAAT-SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............................................................................TAATTAATTATTTT---------CGTTTTCGCATT............................................................................................................................................................................................................................................................................................................................26200.051010000
...................................................................................TAATTATTTT---------CGTTTTCGCATTTTC.........................................................................................................................................................................................................................................................................................................................25200.051100000
.........................................................................................................TTTCGCATTTTCTTGTTGTTGA...............................................................................................................................................................................................................................................................................................................22200.051100000
droBip1
TTTC------TTGAAA-----------------------------------------------------------AGCTTACCCTGGTTTTAAAAACGCTT------------------------------------------------G--AAAT-ATT------------GAAATTTA-------------------------------T--------------------------------------------------------A----------------ATTTTTTTTATTAATATTCATATTATCAAAATTTCCC-G--C---CTATGA---------------------------AAAA----------------------------------------------------------CCAC-SizeHit CountTotal NormTotal
No Reads
droWil2
TTTA------CC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads

Generated: 05/18/2015 at 06:59 PM