ID:

dsi_14037

 Coordinate:

2r:4693429-4693578 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-8.7 -8.7 -8.2

Flybase annnotation

CDS [2r_4693579_4693945_-]; exon [2r_4693579_4693945_-]; intron [2r_4692463_4693578_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ACGCCAATGTCGAGCTCATCGTGGACATTGCTCTTCGCACCCAAGTGCAGGTGAGTCCGGAATCTGGGGGCCACCGCCATAGAAGTGGCCAGTGTCGGTTGCGCCGAGTCGTCTATTTGCCTTGGCCAGCTCCACCCAAAACGCATCGTACGATTCGTATTTGCACTCCGTCAATCGGGGGAACTGGCAAAGTCAAGCGATCGCCCCGCATACCAATAAAGAGACCCCTATTCCTATACGAATACGTATT
****************************************************************************************************((((((((.((......)).))))))..))........................************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M025
embryo
 M023
head
 M053
female body
 O001
Testis
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 SRR902009
testis
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
........GTCGAGCTCATCGTGGACATTGCT.......................................................................................................................................................................................................................... 24 0 1 4.00 4 2 2 0 0 0 0 0 0 0 0 0
................CATCGTGGACATTGCTCTTCGCACCC................................................................................................................................................................................................................ 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
................................CTTCGCACCCAAGTGCAG........................................................................................................................................................................................................ 18 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0
................CATCGTGGACATTGCTCTT....................................................................................................................................................................................................................... 19 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0
.............GCTCATCGTGGACATTGCTCTTCGC.................................................................................................................................................................................................................... 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
...........GAGCTCATCGTGGACATTGCT.......................................................................................................................................................................................................................... 21 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0
..........CGAGCTCATCGTGGACATTGCT.......................................................................................................................................................................................................................... 22 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
....CAATGTCGAGCTCATCGT.................................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...CCAATGTCGAGCTCATCGTGGAC................................................................................................................................................................................................................................ 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...........GAGCTCATCGTGGACATTGCC.......................................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.....AATGTCGAGCTCATCGTGGACA............................................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..................TCGTGGACATTGCTCTTCGCA................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
................CATCGTGGACATTGCTCTTCGCAC.................................................................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....AATGTCGAGCTCATCGTGGA................................................................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........CGAGCTCATCGTGGACATT............................................................................................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....AATGTCGAGCTCATCGTGGAC................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.........TGGAGCTCATCGTGGACATTG............................................................................................................................................................................................................................ 21 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
...............TCATCGTGGACATTGCTCTTCGCACCC................................................................................................................................................................................................................ 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..................TCGTGGACATTGCTCTTCGCACC................................................................................................................................................................................................................. 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................ACCCAAAACGCATCGTACGAT................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.....AATGTCGAGCTCATCGTGGACATT............................................................................................................................................................................................................................. 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.............GCTCATCGTGGACATTGC........................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................GCGCCGAGTCGTCTATTTGCC................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....AATGTCGAGCTCATCGTGGACATTGCT.......................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.CGCCAATGTCGAGCTCATCGTGG.................................................................................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...CCAATGTCGAGCTCATCGT.................................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....CAATGTCGAGCTCATCGTG................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
....................GTGGACATTGCTCTTCGCACC................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................CTTCGCACCCAAGTGCAGGC...................................................................................................................................................................................................... 20 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................CGCCGAGTCGTCTATTTGCCTTGGC............................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................CATCGTGGACATTGCTCTTCGCACC................................................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.CGCCAATGTCGAGCTCATCGT.................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................GCTCTTCGCACCCAAGTGCAGG....................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
.........................................................CGGAATCTGGGGGAC.................................................................................................................................................................................. 15 1 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0
............AGCTCAGCGTGGACA............................................................................................................................................................................................................................... 15 1 15 0.13 2 0 0 0 0 0 0 0 2 0 0 0
..........AGAGATGATCGTGGACATT............................................................................................................................................................................................................................. 19 3 17 0.12 2 0 0 0 0 0 0 0 2 0 0 0
...........................................AGTGCAGATGAGGCCGGA............................................................................................................................................................................................. 18 2 9 0.11 1 0 0 0 0 0 1 0 0 0 0 0
....................GAGGACATGGCTCTTCGTA................................................................................................................................................................................................................... 19 3 10 0.10 1 0 0 0 0 0 0 0 0 0 0 1
.....................................................................................................................................................................GTCCGACAATCGGGGGA.................................................................... 17 2 10 0.10 1 0 0 0 0 0 0 0 0 0 1 0
....................................................................................GTGGCCAGTGTTGGTT...................................................................................................................................................... 16 1 12 0.08 1 0 0 0 0 0 0 0 0 1 0 0
.........................................................................................................................................................................GTACATCGGGGGAACT................................................................. 16 2 18 0.06 1 0 0 0 0 0 0 0 0 1 0 0
...........GAGATGATCGTGGACATTT............................................................................................................................................................................................................................ 19 3 19 0.05 1 0 0 0 0 0 0 0 1 0 0 0
...........GAGATGATCGTGGACATTA............................................................................................................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0
.................................................................................................................................................................................GGAGAACTGGCAGAGTC........................................................ 17 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

TGCGGTTACAGCTCGAGTAGCACCTGTAACGAGAAGCGTGGGTTCACGTCCACTCAGGCCTTAGACCCCCGGTGGCGGTATCTTCACCGGTCACAGCCAACGCGGCTCAGCAGATAAACGGAACCGGTCGAGGTGGGTTTTGCGTAGCATGCTAAGCATAAACGTGAGGCAGTTAGCCCCCTTGACCGTTTCAGTTCGCTAGCGGGGCGTATGGTTATTTCTCTGGGGATAAGGATATGCTTATGCATAA
************************************************************************************************((((((((.((......)).))))))..))........................**************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M023
head
 M053
female body
 O002
Head
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
................................................................ACCCCCGGTGGCGGTATC........................................................................................................................................................................ 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0
.............CGAGTAGCACCTGTAACGAG......................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0
......................................................CAGGCCTTAGACCCCCGGTGG............................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................................................................TAACGCGGCTCAGCAGATAAA.................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................GTTCACGTCCACTCAGGCCTT............................................................................................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.GCGGTTACAGCTCGAGTAGCA.................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0
................................................................................................................................................CAGCATGCTAAGCATAAACG...................................................................................... 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0
........................................................................................................GCTCAGCAGATAAACGGAACC............................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................GAGGTGGGTTTTGCGTAGCAT.................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................TAGCATGCTAAGCATAAACGT..................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................................................................TCGGGGCGTATGGTTATTTCT............................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................................................CCAACGCGGCTCAGCAGAT....................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.......................................GGGTTCACGTCCACTCAGGCC.............................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................GTTTCAGTTCGCAAGCGGGA........................................... 20 2 3 0.33 1 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................GCGGGGCGTAAGGTT.................................. 15 1 9 0.11 1 0 0 0 1 0 0 0 0 0
.......................................................................................................GGATCAGCAGATAAA.................................................................................................................................... 15 1 10 0.10 1 0 0 0 1 0 0 0 0 0
.................................................CCACTCAGGCCTTCG.......................................................................................................................................................................................... 15 1 12 0.08 1 0 0 0 0 0 0 0 1 0
........................................................................................................................................................................................................AGCGGAGCGTATGGATA................................. 17 2 13 0.08 1 0 0 0 0 0 0 0 0 1
............................................................................................................................CGGTCGAGTTGGGTT............................................................................................................... 15 1 13 0.08 1 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................TTGCTAGCGAGGCGTATCG.................................... 19 3 18 0.06 1 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................GCGTATGGTGGTTTCT............................ 16 2 20 0.05 1 0 0 0 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:4693379-4693628 - dsi_14037 ACGCCAATGTCGAGCTCATCGTGGACATTGCTCTTCGCACCCAAGTGCAGGTGAGTCC-------------------------GGAA-------------TCTGGGGGCCA-----CCGCCATAGAAGTGGCCAG--------TGTCGGT---------TGCGCCGAGTCGTCTATTTGCCT-----------------------------------TGGCCAG------CTCCACCCAAAA----------CGCATCGTACGATTCGTATTTGCACTCC-----GTCAATCG-G-GG----G-------------AACTGGCAAAGTCA--AGCGATCGC-----CCCGCATA-------------CCAATAAAGAG---------A-----------CCCCTATTCCTATACGAATACGTATT
droSec2 scaffold_1:1507194-1507443 - ACGCCAATGTCGAGCTCATCGTGGACATTGCTCTTCGCACCCAAGTGCAGGTGAGTCT-------------------------GGAA-------------TCTGGGGGCCA-----CCGCCATAGAAGTGGCCAG--------TGTCGGT---------TGCGCCGAGTAGTCTATTTGCCT-----------------------------------TGGCCAG------CTCCACCCAAAA----------CGCATCGTACGATTCGTATTTGCACTCC-----GTCAATCG-G-GG----G-------------AACTGGCAAAGTCA--AGCGATCGC-----CCCGCATA-------------CCAATAAAGAG---------A-----------CCCCTATTCGTATACGAATACGTATC
dm3 chr2R:3869945-3870195 - ACGCCAATGTCGAGCTCATCGTGGACATTGCTCTTCGCACCCAAGTGCAGGTGAGTCC-------------------------GGAA-------------TCTGGGGGCCA-----CCGCCATAGAAGTGGCCAG--------TGTCGGC---------TGTGCCGAGTTGTCTATTTGCCT-----------------------------------TGGCCAG------CTCCACCCAAAA----------CGCATCGTACGATTCGTATTTGCACTCC-----GTCAATCG-G-GG----G-------------AACTGGCAAAGTCA--AGCGATCGC-----CCCGCATA-------------CCAATAAAGAG---------A-----C-----CCCCTATTCGTATACGAATATGTACT
droEre2 scaffold_4929:18758233-18758466 + ACGCCAATGTTGAACTAATTGTGGACATTGCTCTTCGCACCCAAGTGCAGGTGAGTCC-------------------------GGAA-------------TCTGGGGGACA-----CCGCCATAGATGTGGCCAG--------TGTCAGT-------------CCGAGTTGTCTATTTGCCT-----------------------------------TGGCCAG------CTCCACCCAAAA----------CGCATCGTACGATTTGTATTTGCACTTC-----GTCAATCG-G-GG----A-------------AACTGGCAAAGTCA--AGCGATAGC-----CCCGCATA-------------CCAATAAAGAG---------A-----------CCCCTATT------------CGTATT
droYak3 2L:16526285-16526518 - ACGCCAATGTTGAACTAATCGTGGACATTGCTCTTCGTACCCAAGTGCAGGTGAGTCC-------------------------GGAA-------------TCTAGGGGACA-----CCGCCATAGAAGTGGCCAG--------TGTCGGT-------------CCGAGTTGTCTATTTGCCT-----------------------------------TGGCCAG------CTCCACCCAAAA----------CGCATCGTACGATTTGTATTTGCACTCC-----GTCAATCG-G-GG----G-------------AACTGCCAAAGTCA--AGCGATCGC-----CCCGCATA-------------CCAATAAAGAG---------A-----------CCCCTATT------------CGTATT
droEug1 scf7180000409474:2706648-2706882 - ACGCCAATGTTGAGCTCATTGTGGACATTGCGCTTCGCACTCAAGTGCAGGTGAGTCC-------------------------GGAA-------------TCTGGGGGCCA-----CCGCCATAGAAGTGGCCAG--------TGTCAGT-------------CCGTGTTGTCTATTTGGCT-----------------------------------TGGCCAG------CTCCACCTAAAA----------CGCATCGTACGATTTGTATTTGCACTCT-----GTCAATCGCG-GG----G-------------AACTGCCAAAGTCA--AGCGATCGT-----CCCGCATA-------------CCAATAAACAG---------A-----------CCCCTATT------------TGTATT
droBia1 scf7180000302291:1711674-1711893 - ACGCCAACGTTGAGCTCATCGTGGACATTGCGCTTCGCACTCAAGTGCAGGTGAGTCC-------------------------GGAA-------------TCTGGGGGCCA-----CCGCCTT---------------------GTCGGT-------------CCGTATTGTCTATTTGGCT-----------------------------------TAGCCAG------TTCCACCTAAAA----------CGCATCGTACGATTTGTATTTGCACTCT-----GTCAATCG-G-AG----G-------------AACTAGCAAAGTCA--AGCGATCGT-----CCCGCATA-------------CCAATATAGAG---------A-----------GCCCTGTT------------TGTGT-
droTak1 scf7180000415088:263024-263270 + ACGCCAATGTTGAGCTCATTGTGGACATTGCTCTTCGCACCCAAGTGCAGGTGAGTCC-------------------------GGAA-------------TCTGGGGGCCA-----CCGCCTTAGAAGTGGCCAG--------TGTCAGT-------------CCGTTTTGTCTATTTGGCT-----------------------------------TGGCCAG------CTCCACCTAAAA----------TGCATCGTACGATTTGTATTTGCACTCT-----GTCAATCGGG-GG----G-------------AACT---ATAGCTA-TAGCGATCGTCCCA-ATCGCATA-------------CCAATAAAGAG---------A-----------GCCCCATTTGTATTCGTATTTGTA--
droEle1 scf7180000491258:168521-168779 + ACGCCAATGTTGAGCTCATTGTGGACATTGCGATTCGCACCCAAGTGCAGGTGAGTCC-------------------------GGAA-------T----CTCTGGGGGCCA-----TTGCCATAGAAGTGGCCAGTCGGCCAGTGTCGGT-------------CAG--TTGGCCAG-----T-----------------------------------TGGCCAGTGTCGGC-TCACCTAAAC----------CGCATGGTATGATTTGTATTTGCACTCT-----GTCAATCG-G-GG----C-------------AACTGGCAAAGTCA--AGCGATCGTCCCGTCCCGCATA-------------CAAATAAACAC---------A-----GA----CCCCTATTTGTATTCG--TGTGTATT
droRho1 scf7180000774573:116949-117182 - ACGCCAATGTTGAGCTTATTGTGGACATTGCGCTTCGCACCCAAGTGCAGGTGAGTCC-------------------------GGAA-------------TCTGGGGGCCA-----CTGCCATAGAAGTGGTCAG--------TGTCGAT-------------CCGTGTTGTCTATTTAGTT-----------------------------------TGGCCGT------CTCCACCTAAAC----------CGCATCGTACGATTTGTATTTGCACTCT-----GTCAATCG-G-TG----G-------------AACTAGCAAAGTCA--AGCGATCGT-----CCCGCATA-------------CCAATAAACAG---------A-----------CCGCTGTT------------TGTATT
droFic1 scf7180000453215:341148-341377 + ACGCCAACGTTGAGCTCATTGTGGACATTGCGCTTCGCACCCAAGTGCAGGTGAGTCC-------------------------GGAA-------------TCTGGGGGCCA-----CCGCCATAGAAGTGGCCAA--------TGCCGGT-------------CCG-------TGTTTAGTT-----------------------------------TGGCTGG------CTCCACCTAAAA----------CGCATCGTACGATTTGTATTTGCACTCC-----GTCAATCG-GAGG----G------------AAACTAGCAAAGTCA--AGCGATCGT-----AGCGCATA-------------CAAATAAAAAG---------A-----G-----CCCCTATT------------TGTGTT
droKik1 scf7180000302471:492371-492609 - ATGCCAACGTTGAGCTCATTGTGGATATTGCACTCCGCACTCAAGTGCAGGTGAGTCC-------------------------GGAATCTGGAA------ACTGGGGGCCAC---GCTGCCATAGTGGTCGCT-------------CGG--------------------TGTCTATTTAGTT-----------------------------------TGGTGGG------TTCCACCTCCAACCACCCCGGCTGCATCGTACGATTCGTATTTACACACT-----GTC-----------------------------------AAAGTCA--AGCGATCGCAA--CCCGGCATA-------------CCAATGGAGA----------A-----------CCCCTATTTGTGCGCTCGTGTGTGAT
droAna3 scaffold_13266:16193861-16194102 - ATGCCAATGTTGAGCTCATTGTGGACATTGCACTTCGCACTCAAGTACAGGTGAGTCCGAGGCG-------ATT--------------CTGGAA------TCTGGGGGCCA-----CCGCCATAGAAGTGGCCAG--------TGGGAGGTCGTACGACTGGG---TTTCGTCTATTTGGTT-----------------------------------TGGTTGG------TTCCACCTTAAC----------CGCATCGTACGATTCGTATTGACAC--T-----GTCAATC---------------------------CGGCGAAGTCA--AACGATCGTAC---CCGGCATA-------------CCGATAAAGAG---------A-----G-----GCCCC------------------ATT
droBip1 scf7180000396567:674132-674418 - ACGCCAATGTTGAGCTCATTGTGGACATTGCACTTCGCACTCAAGTACAGGTGAGTCG---GGGATTCTGGAATATGGAATGTGGAA-------------TCTGGGGGCCA-----CCGCCATAGAAGTGGCCAG--------CCTGAGGTCGTCCGACAGTG---CTTTGTCTATTTGGTT-----------------------------------TGGTTGG------TTCCACCTTAAC----------CGCATCGTACGATACGTATTTACAC--T-----GTCAATCT-G-GCACTGGCACTGGTACTGTCACCTGGCAAAGTCA--AACGATCGTAC---CCCGCATA-------------CCGATAAAGAG---------G-----GCCC--CCCCCATT------------TGTATT
dp5 3:5500603-5500871 - ATGCGAATGTTGAGCTCATTGTGGACATTGCACTTCGCACACAAGTGCAGGTGAGT---------------AGT--------------CTGGAGTGAGCGTCTGGAGGCCAGTGGCCAGCCGTAGATGTGGCC-------CAGTGTCAAT-------------CCG---------TTTG---------------------------------------GGTTGG------TTGCGCCTTAAC----------CGCATCGTACGATTCGTATTTACACTCTGTTCTGTCGATCTCC-AG----G-------------GGCTGAAAGAGTCG--AACGATCGTAT---CTCGCATA-------------CCAATGCAAAAGCTCGAAA-ACTTCTGCTCCACC------CCTCTACCAAACAGTCTT
droPer2 scaffold_2:5699872-5700140 - ATGCGAATGTTGAGCTCATTGTGGACATTGCACTTCGCACACAAGTGCAGGTGAGT---------------AGT--------------CTGGAGTGAGCGTCTGGAGGCCAGTGGCCAGCCGTAGATGTGGCC-------CAGTGTCAAT-------------CCG---------TTTG---------------------------------------GGTTGG------TTGCGCCTTAAC----------CGCATCGTACGATTCGTATTTACACTCTGTTCTGTCGATCTCC-AG----G-------------GGCTGAAAGAGTCG--AACGATCGTAT---CTCGCATA-------------CCAATGCAAAAGCTCGAAA-ACTTCTGCTCCACC------CCTCTACCAAACAGTCTT
droWil2 scf2_1100000004513:1766881-1767129 - ATGCCAATGTTGAGCTCATTGTGGATATTGCACTTCGCACTCAAGTTCAGGTAAG------------------------------AA-------------TATGGGGGATG------------------------------------GGT-------------ACA--TTA-----TTATTTTGGTTAGAGATCACAGACATATTCCCGTGTTTCAATGGTCAA------GT------TGAC----------CGCATCGTACGATCTGTGTTTACACGCC-----CCAAA------------------------------GGCAAAGCAAGCAGCAATCGT-----TCGATATATAGCCTCAACATGGCAATAAG----CTAAATAAGCGTCTG---------GAATAATG--TGTGTGTGTATG
droVir3 scaffold_12875:14763924-14763979 - ATGCCAATGTCGAGCTCATTGTGGATATCGCACTTCGCACTCAAGTGCAGGTACGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6496:10236667-10236722 - ATGCGAATGTTGAGCTAATTGTGGATATTGCACTTCGCACACAAGTTCAGGTAGGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15245:14773867-14773922 - ATGCCAATGTCGAGCTCATTGTGGATATTGCTCTGCGCACTCAAGTCCAGGTACGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ACGCCAATGTCGAGCTCATCGTGGACATTGCTCTTCGCACCCAAGTGCAGGTGAGTCC-------------------------GGAA-------------TCTGGGGGCCA-----CCGCCATAGAAGTGGCCAG--------TGTCGGT---------TGCGCCGAGTCGTCTATTTGCCT-----------------------------------TGGCCAG------CTCCACCCAAAA----------CGCATCGTACGATTCGTATTTGCACTCC-----GTCAATCG-G-GG----G-------------AACTGGCAAAGTCA--AGCGATCGC-----CCCGCATA-------------CCAATAAAGAG---------A-----------CCCCTATTCCTATACGAATACGTATTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........GTCGAGCTCATCGTGGACATTGCT.........................................................................................................................................................................................................................................................................................................................................................................................................2414.00402200000000000000
................CATCGTGGACATTGCTCTTCGCACCC...............................................................................................................................................................................................................................................................................................................................................................................................2612.00202000000000000000
................................CTTCGCACCCAAGTGCAG.......................................................................................................................................................................................................................................................................................................................................................................................1812.00200002000000000000
................CATCGTGGACATTGCTCTT......................................................................................................................................................................................................................................................................................................................................................................................................1912.00201100000000000000
.............GCTCATCGTGGACATTGCTCTTCGC...................................................................................................................................................................................................................................................................................................................................................................................................2512.00202000000000000000
...........GAGCTCATCGTGGACATTGCT.........................................................................................................................................................................................................................................................................................................................................................................................................2112.00211000000000000000
..........CGAGCTCATCGTGGACATTGCT.........................................................................................................................................................................................................................................................................................................................................................................................................2212.00200200000000000000
....CAATGTCGAGCTCATCGT...................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
...CCAATGTCGAGCTCATCGTGGAC...............................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010000000000000
...........GAGCTCATCGTGGACATTGCC.........................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
.....AATGTCGAGCTCATCGTGGACA..............................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
..................TCGTGGACATTGCTCTTCGCA..................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
................CATCGTGGACATTGCTCTTCGCAC.................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000000000
.....AATGTCGAGCTCATCGTGGA................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000000000
..........CGAGCTCATCGTGGACATT............................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000000000
.....AATGTCGAGCTCATCGTGGAC...............................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
...............TCATCGTGGACATTGCTCTTCGCACCC...............................................................................................................................................................................................................................................................................................................................................................................................2711.00110000000000000000
..................TCGTGGACATTGCTCTTCGCACC................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000000000
..........................................................................................................................................................................................................................................ACCCAAAA----------CGCATCGTACGAT................................................................................................................................................................2111.00100100000000000000
.....AATGTCGAGCTCATCGTGGACATT............................................................................................................................................................................................................................................................................................................................................................................................................2411.00110000000000000000
.............GCTCATCGTGGACATTGC..........................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
................................................................................................................................................................GCGCCGAGTCGTCTATTTGCC....................................................................................................................................................................................................................................................2111.00101000000000000000
.....AATGTCGAGCTCATCGTGGACATTGCT.........................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000000000
.CGCCAATGTCGAGCTCATCGTGG.................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000000000
...CCAATGTCGAGCTCATCGT...................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000000000
....CAATGTCGAGCTCATCGTG..................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
....................GTGGACATTGCTCTTCGCACC................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
................................CTTCGCACCCAAGTGCAGGC.....................................................................................................................................................................................................................................................................................................................................................................................2011.00100010000000000000
.................................................................................................................................................................CGCCGAGTCGTCTATTTGCCT-----------------------------------TGGC............................................................................................................................................................................................................2511.00101000000000000000
................CATCGTGGACATTGCTCTTCGCACC................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000000000
.CGCCAATGTCGAGCTCATCGT...................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
.............................GCTCTTCGCACCCAAGTGCAGG......................................................................................................................................................................................................................................................................................................................................................................................2211.00100000000000100000
droSec2
ACGCCAATGTCGAGCTCATCGTGGACATTGCTCTTCGCACCCAAGTGCAGGTGAGTCT-------------------------GGAA-------------TCTGGGGGCCA-----CCGCCATAGAAGTGGCCAG--------TGTCGGT---------TGCGCCGAGTAGTCTATTTGCCT-----------------------------------TGGCCAG------CTCCACCCAAAA----------CGCATCGTACGATTCGTATTTGCACTCC-----GTCAATCG-G-GG----G-------------AACTGGCAAAGTCA--AGCGATCGC-----CCCGCATA-------------CCAATAAAGAG---------A-----------CCCCTATTCGTATACGAATACGTATCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..GCCAATGTCGAGCTCATCGTG..................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020110
.....AATGTCGAGCTCATCGTGGACATT............................................................................................................................................................................................................................................................................................................................................................................................................2412.0020200
..........................................................................................................................................................................................................................................................................................................................................................CCCGCATA-------------CCAATAAAGAG---------A-----------CCCCTAT...................2711.0011000
.........................................................T-------------------------GGAA-------------TCTGGGGGCCA-----CCGCC................................................................................................................................................................................................................................................................................................................2111.0011000
........................................................................................................................................................................................................................................CCACCCAAAA----------CGCATCGTACGATTCGT............................................................................................................................................................2711.0010100
..GCCAATGTCGAGCTCATCGTGGAC...............................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100
......................GGACATTGCTCTTCGCACC................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000
.............................................................................................................................................................................................................................................................................................................................ACTGGCAAAGTCA--AGCGA........................................................................................1811.0010001
.....AATGTCGAGCTCATCGTGGAC...............................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
........GTCGAGCTCATCGTGGAC...............................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
............AGCTCATCGTGGACATTGCTCTTCG....................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000
....CAATGTCGAGCTCATCGT...................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
...........GAGCTCATCGTGGACATTGCT.........................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
..............CTCATCGTGGACATTGCTCTTCG....................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100
................CATCGTGGACATTGCTCTTCGCACCCAA.............................................................................................................................................................................................................................................................................................................................................................................................2811.0010010
dm3
ACGCCAATGTCGAGCTCATCGTGGACATTGCTCTTCGCACCCAAGTGCAGGTGAGTCC-------------------------GGAA-------------TCTGGGGGCCA-----CCGCCATAGAAGTGGCCAG--------TGTCGGC---------TGTGCCGAGTTGTCTATTTGCCT-----------------------------------TGGCCAG------CTCCACCCAAAA----------CGCATCGTACGATTCGTATTTGCACTCC-----GTCAATCG-G-GG----G-------------AACTGGCAAAGTCA--AGCGATCGC-----CCCGCATA-------------CCAATAAAGAG---------A-----C-----CCCCTATTCGTATACGAATATGTACTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................TGGACATTGCTCTTCGCACC................................................................................................................................................................................................................................................................................................................................................................................................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......ATGTCGAGCTCATCGTGGACA..............................................................................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........CGAGCTCATCGTGGACATTG...........................................................................................................................................................................................................................................................................................................................................................................................................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000200000000000
..........CGAGCTCATCGTGGACATTGC..........................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...............TCATCGTGGACATTGCTCTTCGCACC................................................................................................................................................................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................TGGACATTGCTCTTCGCACCC...............................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....AATGTCGAGCTCATCGTGGAC...............................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
ACGCCAATGTCGAGCTCATCGT...................................................................................................................................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000100000000000
....CAATGTCGAGCTCATCGTGGA................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......ATGTCGAGCTCATCGTGGACATTGCTCTT......................................................................................................................................................................................................................................................................................................................................................................................................2912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................CATTGCTCTTCGCACCCAAGTGCA........................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................CCCAAAA----------CGCATCGTACGATT...............................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....AATGTCGAGCTCATCGTGGA................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
..GCCAATGTCGAGCTCATCGTGGAC...............................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
.........TCGAGCTCATCGTGGACATTGCTCTT......................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........GAGCTCATCGTGGACATTGCT.........................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000100000000
............AGCTCATCGTGGACATTGCTCT.......................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......TGTCGAGCTCATCGTGGACATTGCTCT.......................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.........TCGAGCTCATCGTGGACATTGCT.........................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................GTGGACATTGCTCTTCGCAT.................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................GCAAAGTCA--AGCGATCGC-----CCCG...........................................................................2211.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..GCCAATGTCGAGCTCATCGT...................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................CC-----GTCAATCG-G-GG----G-------------AACTGG.......................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.............GCTCATCGTGGACATTGC..........................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................................................................................................................................................................GTCAATCG-G-GG----G-------------AACTGG.......................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
...........................TTGCTCTTCGCACCCAAGTGCAGG......................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.CGCCAATGTCGAGCTCATCGTGGACATTGC..........................................................................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................TTCGCACCCAAGTGCAGGC.....................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................CGTGGACATTGCTCTTCGCAC.................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....AATGTCGAGCTCATCGTGG.................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................C-----GTCAATCG-G-GG----G-------------AACTGGC......................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
ACGCCAATGTCGAGCTCATCGTGGAC...............................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........CGAGCTCATCGTGGACAT.............................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................GGCAAAGTCA--AGCGATCGC-----C..............................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................AAGTGCAGGTGAGTCC-------------------------GGAA-------------T....................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
...............................................................................................................................................................................................................................................................................................................................TGGCAAAGTCA--AGCGATCGC-----C..............................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
......................GGACATTGCTCTTCGCACCCAA.............................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........GAGCTCATCGTGGACATTGCTCTTCGCACC................................................................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....AATGTCGAGCTCATCGTGGACATT............................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
...................CGTGGACATTGCTCTTCGCACC................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..GCCAATGTCGAGCTCATCGTG..................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....AATGTCGAGCTCATCGTGGACA..............................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.....AATGTCGAGCTCATCGTG..................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TCGAGCTCATCGTGGACATT............................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...CCAATGTCGAGCTCATCGTG..................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....CAATGTCGAGCTCATCGT...................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..................................................GTGAGTCC-------------------------GGAA-------------TCTGGGGGC............................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................AG------CTCCACCCAAAA----------CGCAT........................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................GTGGACATTGCTCTTCGC...................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................CATTGCTCTTCGCACCCAAGT...........................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................CAAAA----------CGCATCGTACGATTCG.............................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.CGCCAATGTCGAGCTCATCGTGGACA..............................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
........GTCGAGCTCATCGTGGACATTGCT.........................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................CGTGGACATTGCTCTTCGCACCC...............................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........GTCGAGCTCATCGTGGAC...............................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............GCTCATCGTGGACATTGCT.........................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.............................................TGCAGGTGAGTCC-------------------------GGAA-------------TCTG.................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...CCAATGTCGAGCTCATCGTGGAC...............................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................TTGCTCTTCGCACCCAAGT...........................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................TGCTCTTCGCACCCAAGTGC.........................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....CAATGTCGAGCTCATCGTG..................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.CGCCAATGTCGAGCTCATCGT...................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................ACATTGCTCTTCGCACCC...............................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
ACGCCAATGTTGAACTAATTGTGGACATTGCTCTTCGCACCCAAGTGCAGGTGAGTCC-------------------------GGAA-------------TCTGGGGGACA-----CCGCCATAGATGTGGCCAG--------TGTCAGT-------------CCGAGTTGTCTATTTGCCT-----------------------------------TGGCCAG------CTCCACCCAAAA----------CGCATCGTACGATTTGTATTTGCACTTC-----GTCAATCG-G-GG----A-------------AACTGGCAAAGTCA--AGCGATAGC-----CCCGCATA-------------CCAATAAAGAG---------A-----------CCCCTATT------------CGTATTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
........GTTGAACTAATTGTGGACATTGCT.........................................................................................................................................................................................................................................................................................................................................................................................................2412.0021010000
...........GAACTAATTGTGGACATTGCT.........................................................................................................................................................................................................................................................................................................................................................................................................2112.0020101000
.............ACTAATTGTGGACATTGCT.........................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000110
...........GAACTAATTGTGGACATTGCTCTT......................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
..................TTGTGGACATTGCTCTTCGCA..................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001000
.................ATTGTGGACATTGCTCTTCGCA..................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
................................CTTCGCACCCAAGTGCAGGCC....................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000
..............CTAATTGTGGACATTGCTCTTCGCA..................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000010
....CAATGTTGAACTAATTGTGGA................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001000
.........TTGAACTAATTGTGGACATTG...........................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
..........TGAACTAATTGTGGACATTGCT.........................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
.........................................................................................................................ATAGATGTGGCCAG--------TGTCAGT-------------CCGAG.................................................................................................................................................................................................................................................................2611.0010000010
........................ACATTGCTCTTCGCACCCAAGTGC.........................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000
....CAATGTTGAACTAATTGTGGAC...............................................................................................................................................................................................................................................................................................................................................................................................................2211.0010001000
....................................................................................................................................................................................................................................................................................................................................AAGTCA--AGCGATAGC-----CCCG...........................................................................1911.0010001000
........GTTGAACTAATTGTGGACA..............................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
................................CTTCGCACCCAAGTGCAGGC.....................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000
.....................................................................................................................................................................................................................................................................CGATTTGTATTTGCACTT..................................................................................................................................................1811.0010100000
.....................................................................................................................................................................GAGTTGTCTATTTGCCT-----------------------------------TGGCCA..........................................................................................................................................................................................................2311.0010010000
...................TGTGGACATTGCTCTTCGCACCCA..............................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
......ATGTTGAACTAATTGTGGACA..............................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
........GTTGAACTAATTGTGGACATTGC..........................................................................................................................................................................................................................................................................................................................................................................................................2311.0010001000
droYak3
ACGCCAATGTTGAACTAATCGTGGACATTGCTCTTCGTACCCAAGTGCAGGTGAGTCC-------------------------GGAA-------------TCTAGGGGACA-----CCGCCATAGAAGTGGCCAG--------TGTCGGT-------------CCGAGTTGTCTATTTGCCT-----------------------------------TGGCCAG------CTCCACCCAAAA----------CGCATCGTACGATTTGTATTTGCACTCC-----GTCAATCG-G-GG----G-------------AACTGCCAAAGTCA--AGCGATCGC-----CCCGCATA-------------CCAATAAAGAG---------A-----------CCCCTATT------------CGTATTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........GTTGAACTAATCGTGGACATTGCTCTT......................................................................................................................................................................................................................................................................................................................................................................................................2713.00300000030000
......................GGACATTGCTCTTCGTACCCAAGT...........................................................................................................................................................................................................................................................................................................................................................................................2412.00200200000000
................................CTTCGTACCCAAGTGCAGGCC....................................................................................................................................................................................................................................................................................................................................................................................2112.00200100010000
..GCCAATGTTGAACTAATCGT...................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000
...........GAACTAATCGTGGACATTGCC.........................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000
................AATCGTGGACATTGCTCTTCGTACC................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
...CCAATGTTGAACTAATCGTGGACA..............................................................................................................................................................................................................................................................................................................................................................................................................2411.00110000000000
........GTTGAACTAATCGTGGACA..............................................................................................................................................................................................................................................................................................................................................................................................................1911.00110000000000
..............CTAATCGTGGACATTGCTCTT......................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
................AATCGTGGACATTGCTCTTC.....................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
....................GTGGACATTGCTCTTCGTACC................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000100000
.........TTGAACTAATCGTGGACATTGCTCTT......................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
........GTTGAACTAATCGTGGACATTGCC.........................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000
......ATGTTGAACTAATCGTGGACA..............................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
........GTTGAACTAATCGTGGACATTGCTC........................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000
droEug1
ACGCCAATGTTGAGCTCATTGTGGACATTGCGCTTCGCACTCAAGTGCAGGTGAGTCC-------------------------GGAA-------------TCTGGGGGCCA-----CCGCCATAGAAGTGGCCAG--------TGTCAGT-------------CCGTGTTGTCTATTTGGCT-----------------------------------TGGCCAG------CTCCACCTAAAA----------CGCATCGTACGATTTGTATTTGCACTCT-----GTCAATCGCG-GG----G-------------AACTGCCAAAGTCA--AGCGATCGT-----CCCGCATA-------------CCAATAAACAG---------A-----------CCCCTATT------------TGTATTSizeHit CountTotal NormTotal
No Reads
droBia1
ACGCCAACGTTGAGCTCATCGTGGACATTGCGCTTCGCACTCAAGTGCAGGTGAGTCC-------------------------GGAA-------------TCTGGGGGCCA-----CCGCCTT---------------------GTCGGT-------------CCGTATTGTCTATTTGGCT-----------------------------------TAGCCAG------TTCCACCTAAAA----------CGCATCGTACGATTTGTATTTGCACTCT-----GTCAATCG-G-AG----G-------------AACTAGCAAAGTCA--AGCGATCGT-----CCCGCATA-------------CCAATATAGAG---------A-----------GCCCTGTT------------TGTGT-SizeHit CountTotal NormTotal
No Reads
droTak1
ACGCCAATGTTGAGCTCATTGTGGACATTGCTCTTCGCACCCAAGTGCAGGTGAGTCC-------------------------GGAA-------------TCTGGGGGCCA-----CCGCCTTAGAAGTGGCCAG--------TGTCAGT-------------CCGTTTTGTCTATTTGGCT-----------------------------------TGGCCAG------CTCCACCTAAAA----------TGCATCGTACGATTTGTATTTGCACTCT-----GTCAATCGGG-GG----G-------------AACT---ATAGCTA-TAGCGATCGTCCCA-ATCGCATA-------------CCAATAAAGAG---------A-----------GCCCCATTTGTATTCGTATTTGTA--SizeHit CountTotal NormTotal
No Reads
droEle1
ACGCCAATGTTGAGCTCATTGTGGACATTGCGATTCGCACCCAAGTGCAGGTGAGTCC-------------------------GGAA-------T----CTCTGGGGGCCA-----TTGCCATAGAAGTGGCCAGTCGGCCAGTGTCGGT-------------CAG--TTGGCCAG-----T-----------------------------------TGGCCAGTGTCGGC-TCACCTAAAC----------CGCATGGTATGATTTGTATTTGCACTCT-----GTCAATCG-G-GG----C-------------AACTGGCAAAGTCA--AGCGATCGTCCCGTCCCGCATA-------------CAAATAAACAC---------A-----GA----CCCCTATTTGTATTCG--TGTGTATTSizeHit CountTotal NormTotal
No Reads
droRho1
ACGCCAATGTTGAGCTTATTGTGGACATTGCGCTTCGCACCCAAGTGCAGGTGAGTCC-------------------------GGAA-------------TCTGGGGGCCA-----CTGCCATAGAAGTGGTCAG--------TGTCGAT-------------CCGTGTTGTCTATTTAGTT-----------------------------------TGGCCGT------CTCCACCTAAAC----------CGCATCGTACGATTTGTATTTGCACTCT-----GTCAATCG-G-TG----G-------------AACTAGCAAAGTCA--AGCGATCGT-----CCCGCATA-------------CCAATAAACAG---------A-----------CCGCTGTT------------TGTATTSizeHit CountTotal NormTotal
No Reads
droFic1
ACGCCAACGTTGAGCTCATTGTGGACATTGCGCTTCGCACCCAAGTGCAGGTGAGTCC-------------------------GGAA-------------TCTGGGGGCCA-----CCGCCATAGAAGTGGCCAA--------TGCCGGT-------------CCG-------TGTTTAGTT-----------------------------------TGGCTGG------CTCCACCTAAAA----------CGCATCGTACGATTTGTATTTGCACTCC-----GTCAATCG-GAGG----G------------AAACTAGCAAAGTCA--AGCGATCGT-----AGCGCATA-------------CAAATAAAAAG---------A-----G-----CCCCTATT------------TGTGTTSizeHit CountTotal NormTotal
No Reads
droKik1
ATGCCAACGTTGAGCTCATTGTGGATATTGCACTCCGCACTCAAGTGCAGGTGAGTCC-------------------------GGAATCTGGAA------ACTGGGGGCCAC---GCTGCCATAGTGGTCGCT-------------CGG--------------------TGTCTATTTAGTT-----------------------------------TGGTGGG------TTCCACCTCCAACCACCCCGGCTGCATCGTACGATTCGTATTTACACACT-----GTC-----------------------------------AAAGTCA--AGCGATCGCAA--CCCGGCATA-------------CCAATGGAGA----------A-----------CCCCTATTTGTGCGCTCGTGTGTGATSizeHit CountTotal NormTotal
No Reads
droAna3
ATGCCAATGTTGAGCTCATTGTGGACATTGCACTTCGCACTCAAGTACAGGTGAGTCCGAGGCG-------ATT--------------CTGGAA------TCTGGGGGCCA-----CCGCCATAGAAGTGGCCAG--------TGGGAGGTCGTACGACTGGG---TTTCGTCTATTTGGTT-----------------------------------TGGTTGG------TTCCACCTTAAC----------CGCATCGTACGATTCGTATTGACAC--T-----GTCAATC---------------------------CGGCGAAGTCA--AACGATCGTAC---CCGGCATA-------------CCGATAAAGAG---------A-----G-----GCCCC------------------ATTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........GTTGAGCTCATTGTGGACATTGCAC........................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
......ATGTTGAGCTCATTGTGGA................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000
...........................TTGCACTTCGCACTCAAGTACAGGC.....................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
........GTTGAGCTCATTGTGGACATTGCACTTC.....................................................................................................................................................................................................................................................................................................................................................................................................2811.001010000
.................................TTCGCACTCAAGTACAGGC.....................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
................CATTGTGGACATTGCACTTC.....................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
......................................................GTCCGAGGCG-------ATT--------------CTGGAA------TCT..................................................................................................................................................................................................................................................................................................................................2211.001010000
droBip1
ACGCCAATGTTGAGCTCATTGTGGACATTGCACTTCGCACTCAAGTACAGGTGAGTCG---GGGATTCTGGAATATGGAATGTGGAA-------------TCTGGGGGCCA-----CCGCCATAGAAGTGGCCAG--------CCTGAGGTCGTCCGACAGTG---CTTTGTCTATTTGGTT-----------------------------------TGGTTGG------TTCCACCTTAAC----------CGCATCGTACGATACGTATTTACAC--T-----GTCAATCT-G-GCACTGGCACTGGTACTGTCACCTGGCAAAGTCA--AACGATCGTAC---CCCGCATA-------------CCGATAAAGAG---------G-----GCCC--CCCCCATT------------TGTATTSizeHit CountTotal NormTotal
No Reads
dp5
ATGCGAATGTTGAGCTCATTGTGGACATTGCACTTCGCACACAAGTGCAGGTGAGT---------------AGT--------------CTGGAGTGAGCGTCTGGAGGCCAGTGGCCAGCCGTAGATGTGGCC-------CAGTGTCAAT-------------CCG---------TTTG---------------------------------------GGTTGG------TTGCGCCTTAAC----------CGCATCGTACGATTCGTATTTACACTCTGTTCTGTCGATCTCC-AG----G-------------GGCTGAAAGAGTCG--AACGATCGTAT---CTCGCATA-------------CCAATGCAAAAGCTCGAAA-ACTTCTGCTCCACC------CCTCTACCAAACAGTCTTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......ATGTTGAGCTCATTGTGGAC...............................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000020
...................TGTGGACATTGCACTTCGCA..................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
....GAATGTTGAGCTCATTGTGGAC...............................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
..........................................................................................................................................................................................................................GGTTGG------TTGCGCCTTAAC----------C............................................................................................................................................................................1911.0010100000000
............................................................................................AGTGAGCGTCTGGAGGCCAGTT.......................................................................................................................................................................................................................................................................................................................2211.0010100000000
.............GCTCATTGTGGACATTGCACT.......................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
..............................................................................................................AGTGGCCAGCCGTAGATGTG.......................................................................................................................................................................................................................................................................................................2011.0010100000000
..........................ATTGCACTTCGCACACAAGTGCAGGC.....................................................................................................................................................................................................................................................................................................................................................................................2611.0010001000000
.....................................................................................................................................................................................................................................................................................TCTGTTCTGTCGATCTCC-AG----G-------------.............................................................................................................2111.0010100000000
.......TGTTGAGCTCATTGTGGAC...............................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100000
.............................................................................................................................................................................................................................................................................................................................................................................................CGAAA-ACTTCTGCTCCACC------C.................2011.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................CGAAA-ACTTCTGCTCCACC------CC................2111.0010100000000
...................TGTGGACATTGCACTTCGCACACA..............................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
.....AATGTTGAGCTCATTGTGGAC...............................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
......................GGACATTGCACTTCGCACACAAGC...........................................................................................................................................................................................................................................................................................................................................................................................2411.0010010000000
ATGCGAATGTTGAGCTCATTGTGGAC...............................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
.............GCTCATTGTGGACATTGCA.........................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
................CATTGTGGACATTGCACTT......................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
..........TGAGCTCATTGTGGACATTGC..........................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100000
droPer2
ATGCGAATGTTGAGCTCATTGTGGACATTGCACTTCGCACACAAGTGCAGGTGAGT---------------AGT--------------CTGGAGTGAGCGTCTGGAGGCCAGTGGCCAGCCGTAGATGTGGCC-------CAGTGTCAAT-------------CCG---------TTTG---------------------------------------GGTTGG------TTGCGCCTTAAC----------CGCATCGTACGATTCGTATTTACACTCTGTTCTGTCGATCTCC-AG----G-------------GGCTGAAAGAGTCG--AACGATCGTAT---CTCGCATA-------------CCAATGCAAAAGCTCGAAA-ACTTCTGCTCCACC------CCTCTACCAAACAGTCTTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
................CATTGTGGACATTGCACTTCGCACACAA.............................................................................................................................................................................................................................................................................................................................................................................................2812.002200000
..................TTGTGGACATTGCACTTCG....................................................................................................................................................................................................................................................................................................................................................................................................1911.001000010
........GTTGAGCTCATTGTGGACATTGC..........................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000
................CATTGTGGACATTGCACTTCGC...................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000
...............TCATTGTGGACATTGCACT.......................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
......................................................................................................................................................................................................................................................................................................C-AG----G-------------GGCTGAAAGAGTCG--AACGATCGT....................................................................................2711.001100000
..............CTCATTGTGGACATTGCACTT......................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
..........TGAGCTCATTGTGGACATTGCACTTCGC...................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
........GTTGAGCTCATTGTGGACATTGCACTT......................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
........................................................................................CTGGAGTGAGCGTCTGGAGGTT...........................................................................................................................................................................................................................................................................................................................2211.001000001
droWil2
ATGCCAATGTTGAGCTCATTGTGGATATTGCACTTCGCACTCAAGTTCAGGTAAG------------------------------AA-------------TATGGGGGATG------------------------------------GGT-------------ACA--TTA-----TTATTTTGGTTAGAGATCACAGACATATTCCCGTGTTTCAATGGTCAA------GT------TGAC----------CGCATCGTACGATCTGTGTTTACACGCC-----CCAAA------------------------------GGCAAAGCAAGCAGCAATCGT-----TCGATATATAGCCTCAACATGGCAATAAG----CTAAATAAGCGTCTG---------GAATAATG--TGTGTGTGTATGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..................................................................................................................................................................................................................................................................................................................................CAAAGCAAGCAGCAATCGT-----TCG............................................................................2212.00200020
......ATGTTGAGCTCATTGTGG.................................................................................................................................................................................................................................................................................................................................................................................................................1812.00200020
........GTTGAGCTCATTGTGGATATTGC..........................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
....................GTGGATATTGCACTTCGCACT................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
.................ATTGTGGATATTGCACTTCGCACT................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
...............................................................................................................................................................................................................................................GAC----------CGCATCGTACGATCTGT............................................................................................................................................................2011.00100100
...............TCATTGTGGATATTGCACTTCGC...................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
......................................................................................................................................................................................................................................GT------TGAC----------CGCATCGTACGG.................................................................................................................................................................1811.00110000
...................TGTGGATATTGCACTTCGCACTCAAGT...........................................................................................................................................................................................................................................................................................................................................................................................2711.00101000
...........GAGCTCATTGTGGATATTG...........................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
....CAATGTTGAGCTCATTGTG..................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
................................................................................................................................................................................................................GTGTTTCAATGGTCAA------GT------T..........................................................................................................................................................................................1911.00100010
........GTTGAGCTCATTGTGGAT...............................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
droVir3
ATGCCAATGTCGAGCTCATTGTGGATATCGCACTTCGCACTCAAGTGCAGGTACGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................ATTGTGGATATCGCACTTCGCA..................................................................................................................................................................................................................................................................................................................................................................................................2212.002001000000000000000000000000001000000000000000000000000000000000
.......TGTCGAGCTCATTGTGGAT...............................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000010
..........................ATCGCACTTCGCACTCAAGTGCAGGC.....................................................................................................................................................................................................................................................................................................................................................................................2611.001000100000000000000000000000000000000000000000000000000000000000
........GTCGAGCTCATTGTGGATATCGC..........................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000001000000000000000000000000000000000
.......TGTCGAGCTCATTGTGGATATC............................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
................CATTGTGGATATCGCACTTC.....................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
........GTCGAGCTCATTGTGGAT...............................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000001000000000000000000000000000000000000000000000000
......................GGATATCGCACTTCGCACTCAAGT...........................................................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
ATGCGAATGTTGAGCTAATTGTGGATATTGCACTTCGCACACAAGTTCAGGTAGGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........TTGAGCTAATTGTGGATATTGCACTT......................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
.............GCTAATTGTGGATATTGCACTTCGCACA................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
droGri2
ATGCCAATGTCGAGCTCATTGTGGATATTGCTCTGCGCACTCAAGTCCAGGTACGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/17/2015 at 04:11 PM