ID:

dsi_14024

 Coordinate:

3l:5834703-5834943 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-14.3 -14.2 -14.1

Flybase annnotation

exon [3l_5834944_5835047_+]; CDS [3l_5834944_5835047_+]; exon [3l_5834630_5834702_+]; CDS [3l_5834630_5834702_+]; intron [3l_5834703_5834943_+]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CGTGGTGCTAAAGGAGACCAACATCAACAAGATGCACACTACATCCGAGGGTAAGAAATAAGGCCTTAACTCATTTAAAAAAGTTTGGAACACGCATAGGTCCCAATTTAAAATCGACTTTCCATTTATCTGCACTGCTCATTATGTCACAAATAGACTATTACATATCGTAGCACCAAGTCGCCTTATTTTAGTTCGTTATACTCATATAAACAAAATTTTTTGGTCCCAACCAAATTTGAAATTTGAAAAAATCTGCCAATTAATACCAAGCGGGCTTTCCTTGATCAGGCATGTTGCATATTAATCCCAAGGATTTTGTCAACTTCAATTCCAAGAAT
************************************************************************************************************......((((((...............((((...(((((...............)))))....))))..))))))..............................((((.(((((((((....))))))...))).)))).......((((.............))))***************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M024
male body		 M023
head
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
.................................GCACACTACATCCGAGGGCATGT............................................................................................................................................................................................................................................................................................. 23 3 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................TAAAATCGACTTTCCATTTA..................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................................................................................................................................CCCAAGGATTTTGTCAAC............... 18 0 1 1.00 1 0 0 0 0 1 0 0 0
.................................GCACACTACATCCGAGGGCATGC............................................................................................................................................................................................................................................................................................. 23 3 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................GCCAATTAATACCAAGCGG................................................................. 19 0 1 1.00 1 0 0 1 0 0 0 0 0
..............................................................GCCTTAACTCATTTAAAAAAGTTTGG............................................................................................................................................................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................ATTTTAATCCCAAGG.......................... 15 1 10 0.10 1 0 0 0 0 0 0 1 0
.......................................................................................................CAACTTAAAATCGACTGT............................................................................................................................................................................................................................ 18 2 11 0.09 1 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................................AAATTTGAAAAATTCTG................................................................................... 17 1 13 0.08 1 0 0 0 0 0 0 0 1
.....................................................................................................................................................................................................................................................................................CTTTGCTTGATGAGGCA............................................... 17 2 14 0.07 1 0 0 0 0 0 1 0 0
..........................................................................................................................................................................TAGCAACAAGTCGCCTT.......................................................................................................................................................... 17 1 18 0.06 1 0 0 0 0 0 1 0 0
..............................................................................AAAAGATTGGAACTCGC...................................................................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 1 0 0

Anti-sense strand reads

GCACCACGATTTCCTCTGGTTGTAGTTGTTCTACGTGTGATGTAGGCTCCCATTCTTTATTCCGGAATTGAGTAAATTTTTTCAAACCTTGTGCGTATCCAGGGTTAAATTTTAGCTGAAAGGTAAATAGACGTGACGAGTAATACAGTGTTTATCTGATAATGTATAGCATCGTGGTTCAGCGGAATAAAATCAAGCAATATGAGTATATTTGTTTTAAAAAACCAGGGTTGGTTTAAACTTTAAACTTTTTTAGACGGTTAATTATGGTTCGCCCGAAAGGAACTAGTCCGTACAACGTATAATTAGGGTTCCTAAAACAGTTGAAGTTAAGGTTCTTA
*****************************************************************......((((((...............((((...(((((...............)))))....))))..))))))..............................((((.(((((((((....))))))...))).)))).......((((.............))))************************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 GSM343915
embryo
 M024
male body		 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
...................................................................................................CAGGGTTAAATTTTAGCTGAA............................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0
....................................................................................................................................GTGACGAGTAATACAGTGTTT............................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0
..........................................................................................................AAATTTTAGCTGAAA............................................................................................................................................................................................................................ 15 0 1 1.00 1 1 0 0 0 0 0 0
...CCACGATTTCCTCTGGTTGTA............................................................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0
........................................................TTCTTCCGGATTTGAGTAA.......................................................................................................................................................................................................................................................................... 19 2 1 1.00 1 0 1 0 0 0 0 0
.......................................................................................GTTGTGCGCAGCCAGGGTTA.......................................................................................................................................................................................................................................... 20 3 2 0.50 1 0 1 0 0 0 0 0
....................................................................................................................................................................................................................................................................TTAATTCTAGTTCGCTCGAAA............................................................ 21 3 2 0.50 1 0 0 0 0 1 0 0
.....................................................TCTTGATCCCGGAATTG............................................................................................................................................................................................................................................................................... 17 2 9 0.11 1 1 0 0 0 0 0 0
...........................................AGGCCCCCAATCTTTA.......................................................................................................................................................................................................................................................................................... 16 2 16 0.06 1 0 0 0 0 0 1 0
.......................................................................................................................................................................................................................................TGGTCTAAAGTTTAAACT............................................................................................ 18 2 19 0.05 1 0 0 0 0 0 0 1
..............................................................................................................................................................................TGATTCAGCGGGATAA....................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 1 0 0
....................................................................................................................................................................................................................................................................................................................GGGTTCCTTAAACAG.................. 15 1 20 0.05 1 0 0 0 0 1 0 0
......................................................................................................................................................................................................................................................................................AAAGGAACTAGGCCGTT.............................................. 17 2 20 0.05 1 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:5834653-5834993 + dsi_14024 CGTGGTGCTAAAGGAGACCAACATCAA---CAAGATGCACACTACATCCGA---GGGTAAG------AAATA-AGGCC---------------------------------------------TTAACTCATT----TAAAAAAGTTTG---------------------------GAACACGC-------A---------------------------T-AGGTCCCA-------ATTTAAAA------------------------------------------------------------------------------------------------------------TCGACTTTCCATTT------------------ATCTGCACTGCTCATTATGTCACAAA-TAGACTATTACATATCGTA---GC-AC--CAAGTCGCCTTATTTTAGTTC----------------------------GTTATAC-TCATAT-------AAACAAAATTTTTTGGTCCCAACCAAATTTGAA-ATTTG--------A--------AAAAATCT-----G-CCAA-TTAA-------TACCAA-GCGG---------------------------------GCTTTCCTTGATCAGGCATGTTGCATATTAATCCCAAGGATTTTGTCAACTTCAATTCCAAGAAT
droSec2 scaffold_2:5856995-5857335 + CGTGGTGCTCAAGGAGACTAACATCAA---CAAGATGCACACTACATCCGA---GGGTAAG------AAATA-AGGCG---------------------------------------------TTAACTAATT----TAAAAAAGTTTG---------------------------GAACACGC-------A---------------------------T-ATGTCCCA-------ATTTAAAA------------------------------------------------------------------------------------------------------------TCGACATTCCATTT------------------ATCTGCACTGCTCATTATGTCACAAA-TATACTATTACATATCGTA---GC-AC--CAAGTCGCCTTATTTTAGTTC----------------------------GTTATAC-CCATAT-------AAACAAAATTTTTTGGTCCCAACCAAATTTGAA-ATTTG--------A--------AAAAATCT-----G-CCAA-TTAA-------TACCAA-GCGG---------------------------------GCTTTCCTTGATCAGGCATGTTGCATATTAATCCCAAGGATTTTGTCAACTTCAATTCCAAGAAT
dm3 chr3L:5921347-5921686 + CATGGTGCTCAAGGAGACCAACATCAA---CAAGATGCACACTCCATCCGA---GGGTAAG------AAATC-AGGCC---------------------------------------------TTAACCCATC----TAAAAAGTTTTG---------------------------AAACACGC-------A---------------------------T-AGGTCCCA-------ATTTAAAA------------------------------------------------------------------------------------------------------------TCGACTTTCCATTT------------------ATCTGCACTGCTCATTATGTCACATA-TATACTCATACATATCGTA---GC-TC--CAAGTCGCCTCATTTTAGTTC----------------------------GTTATAC-T-CTAT-------AAACAAAATTTTTTGGTCCCACCCAAATTTGAA-ATTTG--------A--------AAAAATCT-----G-CCAA-TTAA-------TACCAA-GAGG---------------------------------GCTTTCCTTGATCAGGCATGTTGCACATCAATCCCAAGGATTTTGTCAACTTCAATTCCAAGAAT
droEre2 scaffold_4784:8618604-8618953 + CGTGGTGATCAAGGAAACTAACATCAA---CGAGATGCACACTCCATCCGA---AGGTAAG------AAATC-ACCCCTCACC--------------------------------------CCCCAACGCCTC----TAAAAA-GTGTG---------------------------GAAGACAT-------A---------------------------A-AGGGGTCT-------ATAAACAA------------------------------------------------------------------------------------------------------------TCGACTTTCCATTA------------------ATCTGCACTGCTCATTATGTCACAAA-TGTACACACACACATCGTA---GC-AC--CAAGTCGCCTCATTTTAGTTC----------------------------GTAATCC-CCATAT-------AAACAAAATTTTTTGGTTCCACCCAAAATTGAA-ATTTGAAA-----A--------AAAAATCT-----G-CGAA-TTAA-------TACCAA-GAGG---------------------------------GCTTTCCTTGATCAGGCATGTTGCATATTAATTCCAAGGAATTCGTCAACTTTAATTCCAAGAAT
droYak3 3L:6499914-6500256 + CGTGGTGCTCAAGGAGTCCAACATCAA---CGAGATGCACACTCCAAGCGA---GGGTAAG------AAACACAGCCC---------------------------------------------TTAACGCCCC----TAAAAAGGTGTG---------------------------GAAAGGGT-------A---------------------------T----------------ATTTACAA------------------------------------------------------------------------------------------------------------TCGACTTTCCATTA------------------ATCTGCACTGCTCATTATGTCACAAA-TGTACACACACACATCGTA---CA-AT--CAAGTCGCCTCATTTTAGTTC----------------------------GTTATCCCCCACAT-------AAACAAAATTTTTTGGTCCCACCCAAATTTGAA-ATTTGTAATAACAA--------AAATAACT-----G-CGAA-TTAA-------TACCAA-GAG---------------------------------TGCTTTCCTTGACCAGGCATGTTGCATATTAATCCCAAGGATTTTGTCAACTTCAATTCCAAGAAT
droEug1 scf7180000409466:3692554-3692904 + CCTGGTGCTCAAGGAGTCTAACATCAA---CGAGATGCACACTCCATCCGA---GGGTAAG------AAGTC-ACCTA---------------------------------------------TTAAC------------------AT---------------------------------------------------------------------------GATTTA-------ATTTAGAATTACTGTATCA-TTGCAT--AAT------------------GAAT-----------------------------------------------------------AATTTTGGCTTTCTATCA------------------ATCGGCACTGCCCATTATGTCATAAA-TATACAAAC--TCATTGTG--AGCAAC--GAAGTCGCCTCATTTTAGTTC----------------------------GTTATTT-C-ATTT---------ACAAAATTC-TTGGTCCCCACCAAAATTGAA-AAT------------A--TTCAAAAA--GC------CCTTA-TTAA-------TACCAA-GCGG-G----------------GACC---CTTACATTGCTTTCCTTGATTAGGCATGTTGAACATCGATCCAAAGGAGTTTGTCAACTTTAATGCCAAGAAT
droBia1 scf7180000302193:3434955-3435279 + CATGGTGCTCAAGGAGTCCAACATCAA---CGAGATGCACACTCCGTCCGA---GGGTAAG------AAGTC-GCCCCT-----------------------------------------------------C----TATGAG-G-----GG-----------------TGTTTTTGGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAG-CCCCACATCTATCA------------------ATCTGCTCTGCCCATTATGTCACAAA-TATAC----ACATCTCGTA---GC-AC--CAAGTCGCCTCATTTTAATTC----------------------------GTTATCC-C-AATT-------AAACAAAATTCTTTGGTCCCCACCAAAATTGAA-AAT------------A--TTCTAAAA--GT------CCCTA-CTAA-------TACCGA-GAGG-G----------------GGCC---CTTACATTGCTTTCCTTGATTAGGCATGTTGCATATTAACCCCAAGGAGTTTGTCAACTTCAACTCCAAGAAT
droTak1 scf7180000415868:650434-650660 + C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCA------------------ATCTGCCCTGCTCATTATGTCATAAAATATAC----ACAAATCGTA---GC-AC--CAAGTCGCCTCATTTTAGTTC----------------------------GTTATCC-C-ACTT-------GAACAAAATTTTTTGGTCCCCACCAAAATTGAA-AAT------------A---------AATCT-----ACCCTA-TTAA-------AACCGA-GCGG-G----------------GGCC-CGCTTATATTGCTTTCCTTGACCAGGCATGTTGAGTATAAACCCCAAGGAGTTTATCAACTTTAATTCCAAGAAT
droEle1 scf7180000491193:712259-712693 + CCTGGTGCTCAAGGAGTCCAACATCAA---CGAGATGCACACTCCATCCGA---GGGTAAG------AAACC-ATCCCCTACT--------ATGTTCCTTTTCTATCCCTTGAAACTCTAAGCCC----------------A-----------------------------------------------------------------AAGTTTCTAT---------------------------------------------CGAGAATTTCAATACACTAAAAAATATACAAATATTTCATATAATT-TGTAGTCGCGTATTTCGTACCAAGACTT--AACTGTGA-AATTTCGACTTTCTATCA------------------A-------TGCCCATAATGTCACAAA-TAT--------ATATCGTA---GC-AG--CAACTAGCCTTATTTTAGTTC----------------------------TTAATTC-T-GTTA-------AATCAAAATTTTCTGGTCCCCACCCAAATTACA-AAT------------A--TTCAAA-AACGT------CCCTA-TTATTAACAACTAACAA-GCGGGG----------------GACC---TTTATATTGCTTTTCTTGATTAGCCATGCTGCAAATAGATCCCAAGGAGTTTGTCAACTTTAACTCGAAGAAT
droRho1 scf7180000779474:129467-129904 + ATTGGTGCTCAAGGAGTCCAACATCAA---CGAGATGCACACTCCATCCGA---GGGTAAG------AAACC-ATCCCTTAGTACATACATATGTATCTTTCCCATCACTT--------------------------CAAGAA-GTATA---------------------------CAAAACATTTTATTTAAAAGTTATAAACTCGAAGTTTATACCGTGGTGTCCCAAGTCTACA--TATAA--------------------------------------------------------------TCTCCTATTTCCATATTTTCTACAAAGACC----------------TTGCCTATATATCA------------------ATATGCACTGCTCATTATGTCACAAA-TAA--------ATAACAAA---GC-AG--CAACTTGGCTCATTTTAGTTC----------------------------CCAATCC-T-TTTA-------TAACAAAATTTTTTGGTCCCCACCCAAATTGAA-AAT------------A--TTCAAAAA--GG------CCCTA-TTAA-------TACCAAAGCGG-G----------------GACC---CTTATATTGCTTTTTCTGATTAGCCATGCTGCAGATAGATCCCAAGGAGTTTGTCAACTTTAACTCCAAGAAT
droFic1 scf7180000453929:1684418-1684824 - TGTTGTGCTCAAGGAGTCGAACATCAA---CGAGATGCACACTCCATCCGA---GGGTAAG------AAAA-------------------------------------------------------ACCCCTT----TAAAAACA-----AATATTGTATAACAATCACTCTTAA--------------------------------GATT--------------------------------------TTCTCACATTTATCTAGTTTTTTAATATAC------------------------------AGTATTAGCGTATTTCCAAACCAGACTTTAAACTTTACAAGA-TCCCCCTCATATTA------------------ACCAACATTGCTCATAATGTCACAAA-AAT--------ATATCGTA---GC------AGGTCGCATTATTTTAGTTC----------------------------GCTATTC-T-ATTT------AAACCTAAATTTTTTGGTCCCCACCAAAATTTAA-AAT------------ATATTGTTAAC--GC------CCCTT-TTAA-------TACCAC-GAGG-G----------------TGCC---ATTGCACTTCTATTCTTTGTCAGGCATGTTGCAAGTTTGTCCGAAGGAGTTTGTCAACTTTAGCTCCAAGAAT
droKik1 scf7180000302711:99465-99621 - TTAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTA----------------------------CT-ATCT-CCATTT-------GGCCAAAATTTTGTGTCT-CA---AAAA-TAAAAA-TTA--------T--------AAAA-TTTTATA----GTA-CTGA-------AATCAA-GGGG-------------------TGT---GTTACGTTCCATTATTTGATTAGGCATGTTGCAAGTGGACCCCAAGGAGTTTCTAAACTTTAACTCAAAGAAT
droAna3 scaffold_13337:12574788-12575131 - CATGGTCCTCAAGGAGTCCAACATCGG---TGAAATGCACACTCCATCGGA---GGGTAAG------TTGCT-TCTCCT--------------------------------------------CTAACTCATCTCCCTATCAA-G--TG---------------------------GAA--------------TCCAAATCATGTAG---------------TG-----------------------------------------------------------------------------------------------------------------------------------------TATCAACTTCCATTACTTCGTCAATATCCTTAGCCCATTATGTCACATA-GAA--------TTATTGTA---G--AG--CAAGTTGCGTCGTTTTAGAT--------------------------------TTTG-T-ATTT-------GAACAAAATTTTTTGGTCCCCACCAAAATTAAA-AAT------------A--CACAAAAAGAGT------CCCTATTTGC-------TAATAA-GGG--------------------TCCCTGCTTGTATTGTTAT---TTCCTAGGTATGTTGCGCCTGGATCCCAAGGACTTTGTCAACTTTAATTCCAAAAAT
droBip1 scf7180000396589:1413899-1414230 + CATGGTCCTCAAGGAGTCCAACATCGG---CGAAATGCACACTCCTTCGGA---GGGTAAG------TC----CCCCC---------------------------------------------------------------AA-GCATG---------------------------GGAAAGAT-------T--------------AAACT--------------------------------------TTATCAGTTTTATCAAAT------------------GTATACGTATA--------------------------------------------------------------CTTCATCA------------------ACATCCTTTGCCTATTATGTCATAAA-TAT--------TTACTGTA---GC-GG--CAGGTTGCGTCGTTTTAGAT--------------------------------ATTG-T-GTTT-------CAACAAAATTATTTGGTCTCCACCAAAATTTAA-AAT------------A--CACAAAAAGAGC------CCCTA-TTGC-------TAATAA-GGG--------------------TCC-TGCTCGTATTGCTTTT---TCTTAGGTATGTTGCGCGTGGATCCCAAGGATTTTGTAAACTTCAATTCCAAAAAT
dp5 XR_group8:3444367-3444665 - CATGGTGCTGAAGGAGTCCAACATCGG---GGACATGCACACCCCAACAGA---GGGTAAGAATATGAA------------------------------------------------------------------------------------------------TCAATCTTTTGGGA--------------AAATTATCAAATCG---------------AA-----------------------------------------------------------------------------------------------------------------------------------------AATCA------------------ACCTGAACTGCTTATTGTGTCA-------------------TTGTA---GC-ATTTGAGTTCTCCTCATTTCAGTTGAATCTTTCGAGCTGTTTC---AAAA------TTTG-T-TTTATTACTAGA----AACATTTTAG-------------------A-TTA--------CAAA--------G-TTTTAAA----TTA-C--------------------------------------ACACA---TTTATATATTATTCCATAAGCAGGCATGTTGCAGCTAGAGCAGAAGGAATTTGTCAACTTCAGTCAGAAAAAT
droPer2 scaffold_65:248750-249048 - CATGGTGCTGAAGGAGTCCAACATCGG---GGACATGCACACCCCAACAGA---GGGTAAGAATATGAA------------------------------------------------------------------------------------------------TCAATCTTTTGGGA--------------AAATTATCAAATCG---------------AA-----------------------------------------------------------------------------------------------------------------------------------------AATCA------------------ACCTGAACTGCTTATTGTGTCA-------------------TTGTA---GC-ATTTGAGTTCTCCTCATTTCAGTTGAATCTTTCGAGCTGTTTC---AAAA------TTTG-T-TTTATTACTAGA----AACATTTTAG-------------------A-TTA--------CAAA--------G-TTTTAAA----TTA-C--------------------------------------ACACA---TTTATATATTATTCTATAAGCAGGCATGTTGCAGCTAGAGCAGAAGGAATTTGTCAACTTCAATCAGAAAAAT
droWil2 scf2_1100000004511:9219819-9219884 - CATGGTGCTCAAGGAATCCAACATTGATGACAACATGCACACACCCTCAGA---TGATGAG------CAATT-AGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_13049:9630023-9630321 - dvi_19217 AATGTCGCCACACGACTCAAGCTTTGG---CGAGCTGCACACAACCCCCGA---TGATGAGGGTAAGTC----ATATAT--------------------------------------------------------------AT-GTGTGGCA-----------------TATATCTG------------------------CCATCG---------------T----------------------------------------------------------------------------------------------------------------------------------------------A------------------TACAACATTGCTTTTAAAATC---------------------------------------------------AGTCACATCTCGCATGAGATTTAATGAAACTTTGTTATTT-C-GTTT-------GAACA------------------------TAAA-TTTCA--------A--------AAAT-TTTTATAGT-TTGA-TTAT-------CAAAAC-GTAC-TATTTTTTT-CCCATC-TACA---TATATATTGTATCTGCTGTACAGTTATGTTGCAATTGGAGCCCAAAGAATTTGTCAATATTTGCCCACAAAGC
droMoj3 scaffold_6680:11134222-11134565 + TATGGCGCCTCACGATTCAAGCAACGG---CAAGCTTCACACGCCATCGGATTTGGGTAAG------CATTT-CGCTTT--GTATATGAATACT-----------------------------------------------TAAGTATA---------------------------TAAATGCT-------T---------------------------T----------------ATGTATG------TGAGCAG---------------------------------------------------------------------------------------------------ATTTATCATTT----A-------------TACAAC---G-TTGACAAAACACAAA-CAT--------TGACTTCACAATCAGT--TATATCACCTAATGTAAATTT----------------------------ATTATTT-A-GTTT-------GAGCAAAAGTTT--------------------------GGAA-----A--------AAAAATTTTATAGT-TTGA-TTAA-------GACCAC-GTAC-AATTTATTTCCCCATC-TACA-TACACATATTGTATCTGCTGTCCAGTTATGCTGCAATTGGAGCCCAAGGAATTTGTAAATATTTGCAAAGATAAT
droGri2 scaffold_15110:17404699-17404750 - ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGTATGTTGCAATTGGAGCCCAACGAGTATGTCAACATTTGCCCACAGAGT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CGTGGTGCTAAAGGAGACCAACATCAA---CAAGATGCACACTACATCCGA---GGGTAAG------AAATA-AGGCC---------------------------------------------TTAACTCATT----TAAAAAAGTTTG---------------------------GAACACGC-------A---------------------------T-AGGTCCCA-------ATTTAAAA------------------------------------------------------------------------------------------------------------TCGACTTTCCATTT------------------ATCTGCACTGCTCATTATGTCACAAA-TAGACTATTACATATCGTA---GC-AC--CAAGTCGCCTTATTTTAGTTC----------------------------GTTATAC-TCATAT-------AAACAAAATTTTTTGGTCCCAACCAAATTTGAA-ATTTG--------A--------AAAAATCT-----G-CCAA-TTAA-------TACCAA-GCGG---------------------------------GCTTTCCTTGATCAGGCATGTTGCATATTAATCCCAAGGATTTTGTCAACTTCAATTCCAAGAATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................................................................................................................................TAAAA------------------------------------------------------------------------------------------------------------TCGACTTTCCATTT------------------A.................................................................................................................................................................................................................................................................................................................................2011.00100010000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAAGGATTTTGTCAAC...............1811.00100000010000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-CCAA-TTAA-------TACCAA-GCGG---------------------------------.................................................................1911.00110000000000000000
...........................................................................GCC---------------------------------------------TTAACTCATT----TAAAAAAGTTTG---------------------------G.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000000000
droSec2
CGTGGTGCTCAAGGAGACTAACATCAA---CAAGATGCACACTACATCCGA---GGGTAAG------AAATA-AGGCG---------------------------------------------TTAACTAATT----TAAAAAAGTTTG---------------------------GAACACGC-------A---------------------------T-ATGTCCCA-------ATTTAAAA------------------------------------------------------------------------------------------------------------TCGACATTCCATTT------------------ATCTGCACTGCTCATTATGTCACAAA-TATACTATTACATATCGTA---GC-AC--CAAGTCGCCTTATTTTAGTTC----------------------------GTTATAC-CCATAT-------AAACAAAATTTTTTGGTCCCAACCAAATTTGAA-ATTTG--------A--------AAAAATCT-----G-CCAA-TTAA-------TACCAA-GCGG---------------------------------GCTTTCCTTGATCAGGCATGTTGCATATTAATCCCAAGGATTTTGTCAACTTCAATTCCAAGAATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCAA-GCGG---------------------------------GCTTTCCTTGATCAG..................................................2511.0010010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAA-TTAA-------TACCAA-GCGG---------------------------------GCT..............................................................2111.0010100
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTGATCAGGCATGTTGC.........................................1911.0010010
...............GACTAACATCAA---CAAGATGCACACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCATATTAATCCCAAGGA.........................2111.0010001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---------------------------------GCTTTCCTTGATCAGGCATG.............................................2111.0010001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCCAAGGATTTTGTCAACTTCAATT........2711.0010010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAAGGATTTTGTCAACTTC............2111.0010010
dm3
CATGGTGCTCAAGGAGACCAACATCAA---CAAGATGCACACTCCATCCGA---GGGTAAG------AAATC-AGGCC---------------------------------------------TTAACCCATC----TAAAAAGTTTTG---------------------------AAACACGC-------A---------------------------T-AGGTCCCA-------ATTTAAAA------------------------------------------------------------------------------------------------------------TCGACTTTCCATTT------------------ATCTGCACTGCTCATTATGTCACATA-TATACTCATACATATCGTA---GC-TC--CAAGTCGCCTCATTTTAGTTC----------------------------GTTATAC-T-CTAT-------AAACAAAATTTTTTGGTCCCACCCAAATTTGAA-ATTTG--------A--------AAAAATCT-----G-CCAA-TTAA-------TACCAA-GAGG---------------------------------GCTTTCCTTGATCAGGCATGTTGCACATCAATCCCAAGGATTTTGTCAACTTCAATTCCAAGAATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........AAGGAGACCAACATCAA---CAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCTTGATCAGGCATGTTGC.........................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCCCAAGGATTTTGTCAACTTC............2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCTTGATCAGGCATGTTGC.........................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................TTTTG---------------------------AAACACGC-------A---------------------------T-AGGTCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........TCAAGGAGACCAACATCAA---CAAGATGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................TCCATTT------------------ATCTGCACTGCTC.....................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCAAGGATTTTGTCAACT..............2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................AACATCAA---CAAGATGCACACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGCACATCAATCCCAAGGATTTTGTC..................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGCCTCATTTTAGTTC----------------------------GT.......................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGTTGCACATCAATCCCAAGGA.........................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTTC----------------------------GTTATAC-T-CTAT-------....................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAA-------TACCAA-GAGG---------------------------------GCTTTCC..........................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAAATTTTTTGGTCCCAC..............................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................TATACTCATACATATCGTA---GC-..............................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................ATCTGCACTGCTCATTATGTC.............................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................TACTCATACATATCGTA---GC-TC--..........................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA-TTAA-------TACCAA-GAGG---------------------------------GCTTT............................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAT-------AAACAAAATTTTTTGGTCCCACCC............................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................CAA---CAAGATGCACACTCCATC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGATCAGGCATGTTGCACA......................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................GA---GGGTAAG------AAATC-AGGCC---------------------------------------------T......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGATCAGGCATGTTGCAC.......................................2011.0010000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-------TACCAA-GAGG---------------------------------GCTTTCCTTGATCAG..................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCAACTTCAATTCCAAG...1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAA-------TACCAA-GAGG---------------------------------GCTTTCCTTGATCAG..................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.ATGGTGCTCAAGGAGACCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.ATGGTGCTCAAGGAGACCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................AAAGTTTTG---------------------------AAACACGC-------A---------------------------T-AG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--------AAAAATCT-----G-CCAA-TTAA-------TACC.........................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTTGCACATCAATCCCAAGGATTT......................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................................................................................A------------------------------------------------------------------------------------------------------------TCGACTTTCCATTT------------------ATCTGC............................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTTGTCAACTTCAATTCCAA....2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................TA---GC-TC--CAAGTCGCCTCATTT...........................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
CATGGTGCTCAAGGAGACCAACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....TGCTCAAGGAGACCAACATCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCTTGATCAGGCATGTTGCAC.......................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................ATCAA---CAAGATGCACACTCCATCCGA---GG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
.................................................................................................................................CATC----TAAAAAGTTTTG---------------------------AAACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-------TACCAA-GAGG---------------------------------GCTTTCCTTG.......................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAAGGATTTTGTCAACTTC............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCAATCCCAAGGATTTTG....................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATTTTAGTTC----------------------------GTTATAC-T-CC.............................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................TTCCATTT------------------ATCTGCACTGCTC.....................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTCAACTTCAATTCCAAGA..2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................CCCATC----TAAAAAGTTTTG---------------------------AAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GG---------------------------------GCTTTCCTTGATCAGGCAT..............................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TC--CAAGTCGCCTCATTTTA.........................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................ATACATATCGTA---GC-TC--CAAG......................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA-TTAA-------TACCAA-GAGG---------------------------------GCT..............................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCAAGGATTTTGTCAACTTCAATT........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................ACCAACATCAA---CAAGATGCACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........TCAAGGAGACCAACATCAA---CAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................TA---GC-TC--CAAGTCGCCTCATTTT..........................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA-GAGG---------------------------------GCTTTCCTTGATC....................................................2011.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAA-------TACCAA-GAGG---------------------------------GCTTTCC..........................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................CTCATACATATCGTA---GC-TC--..........................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
droEre2
CGTGGTGATCAAGGAAACTAACATCAA---CGAGATGCACACTCCATCCGA---AGGTAAG------AAATC-ACCCCTCACC--------------------------------------CCCCAACGCCTC----TAAAAA-GTGTG---------------------------GAAGACAT-------A---------------------------A-AGGGGTCT-------ATAAACAA------------------------------------------------------------------------------------------------------------TCGACTTTCCATTA------------------ATCTGCACTGCTCATTATGTCACAAA-TGTACACACACACATCGTA---GC-AC--CAAGTCGCCTCATTTTAGTTC----------------------------GTAATCC-CCATAT-------AAACAAAATTTTTTGGTTCCACCCAAAATTGAA-ATTTGAAA-----A--------AAAAATCT-----G-CGAA-TTAA-------TACCAA-GAGG---------------------------------GCTTTCCTTGATCAGGCATGTTGCATATTAATTCCAAGGAATTCGTCAACTTTAATTCCAAGAATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAA-GAGG---------------------------------GCTTTCCTTGATCA...................................................2311.0011000000
............................................................................................................................................................................................................................................................................................................................................................................................................................GTACACACACACATCGTA---GC-AC--CAAGT.....................................................................................................................................................................................................................................................................2711.0010100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCTTGATCAGGCATGTTGC.........................................2111.0010001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAATTCCAAGGAATTCGTC..................2111.0010000100
........................CAA---CGAGATGCACACTCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010001000
droYak3
CGTGGTGCTCAAGGAGTCCAACATCAA---CGAGATGCACACTCCAAGCGA---GGGTAAG------AAACACAGCCC---------------------------------------------TTAACGCCCC----TAAAAAGGTGTG---------------------------GAAAGGGT-------A---------------------------T----------------ATTTACAA------------------------------------------------------------------------------------------------------------TCGACTTTCCATTA------------------ATCTGCACTGCTCATTATGTCACAAA-TGTACACACACACATCGTA---CA-AT--CAAGTCGCCTCATTTTAGTTC----------------------------GTTATCCCCCACAT-------AAACAAAATTTTTTGGTCCCACCCAAATTTGAA-ATTTGTAATAACAA--------AAATAACT-----G-CGAA-TTAA-------TACCAA-GAG---------------------------------TGCTTTCCTTGACCAGGCATGTTGCATATTAATCCCAAGGATTTTGTCAACTTCAATTCCAAGAATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................................GCACACTCCAAGCGA---GGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000
.........................AA---CGAGATGCACACTCCAAGCGA---GGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAA-GAG---------------------------------TGCTTTCCTTGACC....................................................2211.00100100000000
.................................GATGCACACTCCAAGCGA---GGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
........................CAA---CGAGATGCACACTCCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAA-GAG---------------------------------TGCTTTCCTTGACC....................................................2111.00100100000000
droEug1
CCTGGTGCTCAAGGAGTCTAACATCAA---CGAGATGCACACTCCATCCGA---GGGTAAG------AAGTC-ACCTA---------------------------------------------TTAAC------------------AT---------------------------------------------------------------------------GATTTA-------ATTTAGAATTACTGTATCA-TTGCAT--AAT------------------GAAT-----------------------------------------------------------AATTTTGGCTTTCTATCA------------------ATCGGCACTGCCCATTATGTCATAAA-TATACAAAC--TCATTGTG--AGCAAC--GAAGTCGCCTCATTTTAGTTC----------------------------GTTATTT-C-ATTT---------ACAAAATTC-TTGGTCCCCACCAAAATTGAA-AAT------------A--TTCAAAAA--GC------CCTTA-TTAA-------TACCAA-GCGG-G----------------GACC---CTTACATTGCTTTCCTTGATTAGGCATGTTGAACATCGATCCAAAGGAGTTTGTCAACTTTAATGCCAAGAATSizeHit CountTotal NormTotal
No Reads
droBia1
CATGGTGCTCAAGGAGTCCAACATCAA---CGAGATGCACACTCCGTCCGA---GGGTAAG------AAGTC-GCCCCT-----------------------------------------------------C----TATGAG-G-----GG-----------------TGTTTTTGGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAG-CCCCACATCTATCA------------------ATCTGCTCTGCCCATTATGTCACAAA-TATAC----ACATCTCGTA---GC-AC--CAAGTCGCCTCATTTTAATTC----------------------------GTTATCC-C-AATT-------AAACAAAATTCTTTGGTCCCCACCAAAATTGAA-AAT------------A--TTCTAAAA--GT------CCCTA-CTAA-------TACCGA-GAGG-G----------------GGCC---CTTACATTGCTTTCCTTGATTAGGCATGTTGCATATTAACCCCAAGGAGTTTGTCAACTTCAACTCCAAGAATSizeHit CountTotal NormTotal
No Reads
droTak1
C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCA------------------ATCTGCCCTGCTCATTATGTCATAAAATATAC----ACAAATCGTA---GC-AC--CAAGTCGCCTCATTTTAGTTC----------------------------GTTATCC-C-ACTT-------GAACAAAATTTTTTGGTCCCCACCAAAATTGAA-AAT------------A---------AATCT-----ACCCTA-TTAA-------AACCGA-GCGG-G----------------GGCC-CGCTTATATTGCTTTCCTTGACCAGGCATGTTGAGTATAAACCCCAAGGAGTTTATCAACTTTAATTCCAAGAATSizeHit CountTotal NormTotal
No Reads
droEle1
CCTGGTGCTCAAGGAGTCCAACATCAA---CGAGATGCACACTCCATCCGA---GGGTAAG------AAACC-ATCCCCTACT--------ATGTTCCTTTTCTATCCCTTGAAACTCTAAGCCC----------------A-----------------------------------------------------------------AAGTTTCTAT---------------------------------------------CGAGAATTTCAATACACTAAAAAATATACAAATATTTCATATAATT-TGTAGTCGCGTATTTCGTACCAAGACTT--AACTGTGA-AATTTCGACTTTCTATCA------------------A-------TGCCCATAATGTCACAAA-TAT--------ATATCGTA---GC-AG--CAACTAGCCTTATTTTAGTTC----------------------------TTAATTC-T-GTTA-------AATCAAAATTTTCTGGTCCCCACCCAAATTACA-AAT------------A--TTCAAA-AACGT------CCCTA-TTATTAACAACTAACAA-GCGGGG----------------GACC---TTTATATTGCTTTTCTTGATTAGCCATGCTGCAAATAGATCCCAAGGAGTTTGTCAACTTTAACTCGAAGAATSizeHit CountTotal NormTotal
No Reads
droRho1
ATTGGTGCTCAAGGAGTCCAACATCAA---CGAGATGCACACTCCATCCGA---GGGTAAG------AAACC-ATCCCTTAGTACATACATATGTATCTTTCCCATCACTT--------------------------CAAGAA-GTATA---------------------------CAAAACATTTTATTTAAAAGTTATAAACTCGAAGTTTATACCGTGGTGTCCCAAGTCTACA--TATAA--------------------------------------------------------------TCTCCTATTTCCATATTTTCTACAAAGACC----------------TTGCCTATATATCA------------------ATATGCACTGCTCATTATGTCACAAA-TAA--------ATAACAAA---GC-AG--CAACTTGGCTCATTTTAGTTC----------------------------CCAATCC-T-TTTA-------TAACAAAATTTTTTGGTCCCCACCCAAATTGAA-AAT------------A--TTCAAAAA--GG------CCCTA-TTAA-------TACCAAAGCGG-G----------------GACC---CTTATATTGCTTTTTCTGATTAGCCATGCTGCAGATAGATCCCAAGGAGTTTGTCAACTTTAACTCCAAGAATSizeHit CountTotal NormTotal
No Reads
droFic1
TGTTGTGCTCAAGGAGTCGAACATCAA---CGAGATGCACACTCCATCCGA---GGGTAAG------AAAA-------------------------------------------------------ACCCCTT----TAAAAACA-----AATATTGTATAACAATCACTCTTAA--------------------------------GATT--------------------------------------TTCTCACATTTATCTAGTTTTTTAATATAC------------------------------AGTATTAGCGTATTTCCAAACCAGACTTTAAACTTTACAAGA-TCCCCCTCATATTA------------------ACCAACATTGCTCATAATGTCACAAA-AAT--------ATATCGTA---GC------AGGTCGCATTATTTTAGTTC----------------------------GCTATTC-T-ATTT------AAACCTAAATTTTTTGGTCCCCACCAAAATTTAA-AAT------------ATATTGTTAAC--GC------CCCTT-TTAA-------TACCAC-GAGG-G----------------TGCC---ATTGCACTTCTATTCTTTGTCAGGCATGTTGCAAGTTTGTCCGAAGGAGTTTGTCAACTTTAGCTCCAAGAATSizeHit CountTotal NormTotal
No Reads
droKik1
TTAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTA----------------------------CT-ATCT-CCATTT-------GGCCAAAATTTTGTGTCT-CA---AAAA-TAAAAA-TTA--------T--------AAAA-TTTTATA----GTA-CTGA-------AATCAA-GGGG-------------------TGT---GTTACGTTCCATTATTTGATTAGGCATGTTGCAAGTGGACCCCAAGGAGTTTCTAAACTTTAACTCAAAGAATSizeHit CountTotal NormTotal
No Reads
droAna3
CATGGTCCTCAAGGAGTCCAACATCGG---TGAAATGCACACTCCATCGGA---GGGTAAG------TTGCT-TCTCCT--------------------------------------------CTAACTCATCTCCCTATCAA-G--TG---------------------------GAA--------------TCCAAATCATGTAG---------------TG-----------------------------------------------------------------------------------------------------------------------------------------TATCAACTTCCATTACTTCGTCAATATCCTTAGCCCATTATGTCACATA-GAA--------TTATTGTA---G--AG--CAAGTTGCGTCGTTTTAGAT--------------------------------TTTG-T-ATTT-------GAACAAAATTTTTTGGTCCCCACCAAAATTAAA-AAT------------A--CACAAAAAGAGT------CCCTATTTGC-------TAATAA-GGG--------------------TCCCTGCTTGTATTGTTAT---TTCCTAGGTATGTTGCGCCTGGATCCCAAGGACTTTGTCAACTTTAATTCCAAAAATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCGCCTGGATCCCAAGG..........................2012.002110000
......CCTCAAGGAGTCCAACATCGG---T...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTTGCGCCTGGATCCC..............................1911.001010000
.......CTCAAGGAGTCCAACATCGG---....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
...............................GAAATGCACACTCCATCGGA---............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
...........................................CCATCGGA---GGGTAAG------TTGCT-TC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
...............GTCCAACATCGG---TGAAATGCACACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
...............GTCCAACATCGG---TGAAATGCACACTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
droBip1
CATGGTCCTCAAGGAGTCCAACATCGG---CGAAATGCACACTCCTTCGGA---GGGTAAG------TC----CCCCC---------------------------------------------------------------AA-GCATG---------------------------GGAAAGAT-------T--------------AAACT--------------------------------------TTATCAGTTTTATCAAAT------------------GTATACGTATA--------------------------------------------------------------CTTCATCA------------------ACATCCTTTGCCTATTATGTCATAAA-TAT--------TTACTGTA---GC-GG--CAGGTTGCGTCGTTTTAGAT--------------------------------ATTG-T-GTTT-------CAACAAAATTATTTGGTCTCCACCAAAATTTAA-AAT------------A--CACAAAAAGAGC------CCCTA-TTGC-------TAATAA-GGG--------------------TCC-TGCTCGTATTGCTTTT---TCTTAGGTATGTTGCGCGTGGATCCCAAGGATTTTGTAAACTTCAATTCCAAAAATSizeHit CountTotal NormTotal
No Reads
dp5
CATGGTGCTGAAGGAGTCCAACATCGG---GGACATGCACACCCCAACAGA---GGGTAAGAATATGAA------------------------------------------------------------------------------------------------TCAATCTTTTGGGA--------------AAATTATCAAATCG---------------AA-----------------------------------------------------------------------------------------------------------------------------------------AATCA------------------ACCTGAACTGCTTATTGTGTCA-------------------TTGTA---GC-ATTTGAGTTCTCCTCATTTCAGTTGAATCTTTCGAGCTGTTTC---AAAA------TTTG-T-TTTATTACTAGA----AACATTTTAG-------------------A-TTA--------CAAA--------G-TTTTAAA----TTA-C--------------------------------------ACACA---TTTATATATTATTCCATAAGCAGGCATGTTGCAGCTAGAGCAGAAGGAATTTGTCAACTTCAGTCAGAAAAATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCATAAGCAGGCATGTTGCA........................................2111.0010000001000
droPer2
CATGGTGCTGAAGGAGTCCAACATCGG---GGACATGCACACCCCAACAGA---GGGTAAGAATATGAA------------------------------------------------------------------------------------------------TCAATCTTTTGGGA--------------AAATTATCAAATCG---------------AA-----------------------------------------------------------------------------------------------------------------------------------------AATCA------------------ACCTGAACTGCTTATTGTGTCA-------------------TTGTA---GC-ATTTGAGTTCTCCTCATTTCAGTTGAATCTTTCGAGCTGTTTC---AAAA------TTTG-T-TTTATTACTAGA----AACATTTTAG-------------------A-TTA--------CAAA--------G-TTTTAAA----TTA-C--------------------------------------ACACA---TTTATATATTATTCTATAAGCAGGCATGTTGCAGCTAGAGCAGAAGGAATTTGTCAACTTCAATCAGAAAAATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....................ACATCGG---GGACATGCACACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAGAGCAGAAGGAATTTGT...................2111.001010000
droWil2
CATGGTGCTCAAGGAATCCAACATTGATGACAACATGCACACACCCTCAGA---TGATGAG------CAATT-AGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............................................CAGA---TGATGAG------CAATT-AG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
droVir3
AATGTCGCCACACGACTCAAGCTTTGG---CGAGCTGCACACAACCCCCGA---TGATGAGGGTAAGTC----ATATAT--------------------------------------------------------------AT-GTGTGGCA-----------------TATATCTG------------------------CCATCG---------------T----------------------------------------------------------------------------------------------------------------------------------------------A------------------TACAACATTGCTTTTAAAATC---------------------------------------------------AGTCACATCTCGCATGAGATTTAATGAAACTTTGTTATTT-C-GTTT-------GAACA------------------------TAAA-TTTCA--------A--------AAAT-TTTTATAGT-TTGA-TTAT-------CAAAAC-GTAC-TATTTTTTT-CCCATC-TACA---TATATATTGTATCTGCTGTACAGTTATGTTGCAATTGGAGCCCAAAGAATTTGTCAATATTTGCCCACAAAGCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..........................................AACCCCCGA---TGATGAGGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.003000002010000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAATTGGAGCCCAAAGAATTT.....................2312.002000000000000000000000000000002000000000000000000000000000000000
..................AAGCTTTGG---CGAGCTGCACAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000001000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................CATTGCTTTTAAAATC---------------------------------------------------AGTCACATCT................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
.............GACTCAAGCTTTGG---CGAGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000010000000000000000000000000000000000000000000000000
.............GACTCAAGCTTTGG---CGAGCTGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATTGTATCTGCTGTACAG..................................................2211.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGCCCAAAGAATTTGT...................2111.001000000000001000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTACAGTTATGTTGCAATT.....................................2111.001000000000000000000000000000000100000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTGTATCTGCTGTACA...................................................1911.001000000000000000000000000000001000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATAGT-TTGA-TTAT-------CAAAAC-GTAC-TA...............................................................................................2811.001000000000000000000000000000001000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCCCAAAGAATTTGTCAATATT............2711.001000100000000000000000000000000000000000000000000000000000000000
.............GACTCAAGCTTTGG---CGAGCTGCACAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000001000000000000000000000000000000000
.............GACTCAAGCTTTGG---CGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000001000000000000000000000000000000000
....................................GCACACAACCCCCGA---TGATGAGGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000010000000000000000000000000000000000000000000000000
..........................G---CGAGCTGCACACAACCCCCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000001000000000000000000000000
............CGACTCAAGCTTTGG---CGAGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000100000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCAATTGGAGCCCAAA...........................1911.001000000000000000000000000000000000001000000000000000000000000000
..............ACTCAAGCTTTGG---CGAGCTGCACAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
.........ACACGACTCAAGCTTTGG---CGAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
droMoj3
TATGGCGCCTCACGATTCAAGCAACGG---CAAGCTTCACACGCCATCGGATTTGGGTAAG------CATTT-CGCTTT--GTATATGAATACT-----------------------------------------------TAAGTATA---------------------------TAAATGCT-------T---------------------------T----------------ATGTATG------TGAGCAG---------------------------------------------------------------------------------------------------ATTTATCATTT----A-------------TACAAC---G-TTGACAAAACACAAA-CAT--------TGACTTCACAATCAGT--TATATCACCTAATGTAAATTT----------------------------ATTATTT-A-GTTT-------GAGCAAAAGTTT--------------------------GGAA-----A--------AAAAATTTTATAGT-TTGA-TTAA-------GACCAC-GTAC-AATTTATTTCCCCATC-TACA-TACACATATTGTATCTGCTGTCCAGTTATGCTGCAATTGGAGCCCAAGGAATTTGTAAATATTTGCAAAGATAATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGTATGTTGCAATTGGAGCCCAACGAGTATGTCAACATTTGCCCACAGAGTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGCCCAACGAGTATGTCA.................2312.00202

Generated: 05/19/2015 at 05:32 AM