ID:

dsi_14013

 Coordinate:

3r:4265596-4265838 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

Antisense to CDS [3r_4265253_4265599_+]; Antisense to three_prime_UTR [3r_4265600_4265682_+]; Antisense to exon [3r_4265253_4265682_+]

No Repeatable elements found

Sense Strand Reads

TGATCCAGTTCCTTGGCCAGATAATAAATGACCCTGGGTTTATCATAGAGGTGAGGGAATAACGGATAACGGTGTACAGGAGCAGGTAGCGCTTAATGTGCCTTCCCCGACGGGAACATGTAAATACATGTACATTCGCCATAAAGCGCTATAAAGCTCATGTGTGAAATGGAAAAAAGACGGCCACCCGAACATCAACAAGCTCACTTCAAAATCTTTAACATAAATATATTTTACAGTCTCTACGTACATAAGAGCTGTTTAATCAAATAAACAATTTATTCTTAGTCTAGTTCATGTCATCATCATCGTCGTAGTCGTCCATTTCGTCATCGTCATCCTC
**************************************************(((((.......((.....))...((((.((((..(((((((((.(((.((..((((....))))((((((....))))))......))))).)))))))))...)))).))))................(((....)))............))))).......................(((..((((.((((.........))))))))..)))...........................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 O001
Testis
 SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
........................................................................................................................................................................................................................................TTTACAGTCTCTGCGTACATA.......................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................TCCATTTCGTCATCGTCATCC.. 21 0 1 1.00 1 0 1 0 0 0 0
...............................................................GGATAACGGTGTACGGGAGCAA.................................................................................................................................................................................................................................................................. 22 2 1 1.00 1 0 0 1 0 0 0
..............................................................................................................................................................................................................................................................................................................................CGTCCATTTCGTCATCGTCAT.... 21 0 1 1.00 1 1 0 0 0 0 0
............................................AGAAAGGTGAGGGAATAAAG....................................................................................................................................................................................................................................................................................... 20 3 11 0.09 1 0 0 0 0 1 0
....................................................................................................................CATGTAAATAGATGTA................................................................................................................................................................................................................... 16 1 12 0.08 1 0 0 0 0 0 1
................................................................................................................................................................TGAGTGAAAGGGAAAAAA..................................................................................................................................................................... 18 2 20 0.05 1 0 0 0 1 0 0
............................................................AACGGGTAACGGTGTCCT......................................................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 1 0 0

Anti-sense strand reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------#########################################################################################################################################
ACTAGGTCAAGGAACCGGTCTATTATTTACTGGGACCCAAATAGTATCTCCACTCCCTTATTGCCTATTGCCACATGTCCTCGTCCATCGCGAATTACACGGAAGGGGCTGCCCTTGTACATTTATGTACATGTAAGCGGTATTTCGCGATATTTCGAGTACACACTTTACCTTTTTTCTGCCGGTGGGCTTGTAGTTGTTCGAGTGAAGTTTTAGAAATTGTATTTATATAAAATGTCAGAGATGCATGTATTCTCGACAAATTAGTTTATTTGTTAAATAAGAATCAGATCAAGTACAGTAGTAGTAGCAGCATCAGCAGGTAAAGCAGTAGCAGTAGGAG
**************************************************(((((.......((.....))...((((.((((..(((((((((.(((.((..((((....))))((((((....))))))......))))).)))))))))...)))).))))................(((....)))............))))).......................(((..((((.((((.........))))))))..)))...........................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M024
male body		 M025
embryo
 O001
Testis
 M023
head
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
...............................................................................................................................................................................................................................ATTTATATAAAATGTCAGAGATGCAT.............................................................................................. 26 0 1 9.00 9 5 0 0 0 3 0 0 1 0 0 0 0
...............................................................................................................................................................................................................................ATTTATATAAAATGTCAGAGATGCATG............................................................................................. 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................AGATGCATGTATTCTCGACAAATTAGT........................................................................... 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................AAATTTATATAAAATGTCAGAGATGCAT.............................................................................................. 28 2 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................AGATCAAGTACAGCAGTAGTA.................................. 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................CAAGTACAGCAGTAGTAGCAGCAT........................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................AAGAATCAGATCAAGTACAGCAGTAGTAG................................. 29 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................ATTTATATAAAATGTCAGAGATGCATGT............................................................................................ 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................AAAGTTTTAGAAATTGTATT..................................................................................................................... 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................TTATATAAAATGTCAGAGATGCATT............................................................................................. 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................TAAAATGTCAGAGATGCATGTAT.......................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................ATCAAGTACAGCAGTAGTAGCAGCAT........................... 26 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................AAAATGTCAGAGATGCATGT............................................................................................ 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
..................................................................................................................................................................................................................................TATATAAAATGTCAGAGATGCATGTATTC........................................................................................ 29 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................................................TTATATAAAATGTCAGACATGCATG............................................................................................. 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................ATTACTAGGAAGGGGCTGCCCCT................................................................................................................................................................................................................................... 23 3 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................GCAGGTAAAGCAGTAGCAGTA.... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................AGAATCAGATCAAGTACAGTAGTAG.................................... 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................................................TTATATAAAATGTCAGAGATGCATG............................................................................................. 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................TCAAGTACAGTAGTAGTAGCAGCATCAG........................ 28 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................................................................................................................................................TCAAGTACAGCAGTAGTAGCAGCAT........................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................AGTAGCAGCATCAGCAGGTAAAGCAGT........... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TGTAGTTGTTCGTGTGAAGT.................................................................................................................................... 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................AAAAAATGTCAGAGATGCATGTATTCT....................................................................................... 27 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................CGGTGGGCTTGTAGTTGTTC............................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
............................................................................................................................................................................................................................TGTATTTATATAAAATGTCAGAGATGC................................................................................................ 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................GGCTTGTAGTTGTTCGTGTGA....................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................TCAGCAGGTAAAGCAGT........... 17 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................CAAGTACAGTAGTAGTAGCA............................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
................................................................................................................................................................................................................................................................................................AGATCAAGTACAGTAGTAGTAGCAGCA............................ 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................................................ATTGATATAAAATGTCAGAGATGCATGT............................................................................................ 28 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................AGTTTTAGAAATTGTATTTATAT................................................................................................................ 23 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................TAGCAGCATCAGCAGGTAAAGCAGT........... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................AAAATGTCAGCGCTGAATGTAT.......................................................................................... 22 3 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
.................................................TCACCCCTTTATTGCCTATTGC................................................................................................................................................................................................................................................................................ 22 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TTTGGTGGGCTTGTAGTTGTT.............................................................................................................................................. 21 3 11 0.18 2 0 2 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................ATTTGTTAAATAAGTATCC...................................................... 19 2 7 0.14 1 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................AGAATATGCTCAAGTACAGT......................................... 20 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 1 0
...............................................................................................................................................................................................................CCGTTTTAGAAATTGTATGTA................................................................................................................... 21 3 9 0.11 1 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................AGTAGTAGGAGCAGCAT........................... 17 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................AAAGCAGAGGCAGTAGG.. 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1
............................................................................................................................................................................TTTTCTCTGCCGGTG............................................................................................................................................................ 15 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0

Generated: 04/23/2015 at 11:40 PM