ID:

dsi_13996

 Coordinate:

3r:16381715-16381970 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-1.9 -1.2

Flybase annnotation

five_prime_UTR [3r_16381971_16383689_+]; exon [3r_16381971_16383689_+]; CDS [3r_16381971_16383689_+]; five_prime_UTR [3r_16381562_16381714_+]; exon [3r_16381562_16381714_+]; CDS [3r_16381562_16381714_+]; exon [3r_16381562_16381714_+]; exon [3r_16381971_16383689_+]; intron [3r_16381715_16381970_+]; intron [3r_16381715_16381970_+]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TGCAGTGCGTCCAGCAACTGGATCTGGATGCCATAAAGCCAGGCGATCAGGTGTGTAATGCCCGCAGCCCTCAAGTTTCGGCTTTTGTTCGGTTTACATCTTACTAGAAACTCTACAGCACAGCTAGCACATTGATGTTTGTCAGTTATTCGTGGAAAAACTTACATACGTTGTTGCAAATATATACAATCCATACATTTATTGATTCCCAGATCACTATTTTCATTACCCTCGTTTAAACATTGTTATTATTTTGAGCAAAGACATCGCTAAAATTCAAGTTCTATTTTATTCCCGTACATACAGAACCGGACGGAAACTCCCAGAAGGCACAATCCAACACATAGTCACAGCCA
****************************************************************************************************************************************************************************************************************************************************......(((((.(((.........))))))))..............................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body		 SRR902009
testis
 M025
embryo
 M053
female body
 O001
Testis
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
.....................................................................................................................................................................................................................................................................................................................CGGACGGAAACTCCCAGAAGGCACA...................... 25 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................ATCAGAACCGGACGGAAACTCC................................. 22 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................GAACCGGACGGAAACTCCCAGAAG........................... 24 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................ACCGGACGGAAACTCCCAGAA............................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................GAACCGGACGGAAACTCCCAGAAGG.......................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................CCGGACGGAAACTCCCAGAA............................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................ACCGGACGGAAACTCCCAGA............................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................GTTATTATTTTGAGCAAAGAC........................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
....GTGCGTCCAGCAACTGGATCT........................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................TTTATTCCCGTACATACAG.................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...AGTGCGTCCAGCAACTGGATCTGGA........................................................................................................................................................................................................................................................................................................................................ 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................GAACCGGACGGAAACTCCC................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................ACCGGACGGAAACTCCCAGAAGG.......................... 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................GAACCGGACGGAAACTCC................................. 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..........................................GCAATCAGGTCTGTGATGCC...................................................................................................................................................................................................................................................................................................... 20 3 7 0.29 2 0 2 0 0 0 0 0 0 0 0
...........................ATGCGATAAAGCCAGTCG....................................................................................................................................................................................................................................................................................................................... 18 2 4 0.25 1 0 0 0 0 0 0 1 0 0 0
...............................................................................................................................................................................................................................................................................................................CAGAACCGGACGGAGA..................................... 16 1 4 0.25 1 0 0 0 0 0 0 0 0 1 0
TGTAGTGCGTCCAGC..................................................................................................................................................................................................................................................................................................................................................... 15 1 5 0.20 1 0 0 0 0 0 0 0 1 0 0
....................................................................................................................................................................................................................................................................................................................CCGGACGGAAACACCA................................ 16 2 20 0.15 3 0 0 0 0 0 0 3 0 0 0
.............................................................................................................................................TAAGGTAATCGTGGAAAAA.................................................................................................................................................................................................... 19 3 20 0.10 2 0 0 2 0 0 0 0 0 0 0
...........................................CGAACAGGTGAGTAATGC....................................................................................................................................................................................................................................................................................................... 18 2 13 0.08 1 0 0 0 0 0 0 0 1 0 0
...............................................................................................................................................................................................................................................ACGGTGTTATTATTTTGA................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0
.........................................GGCGAACGGGTGAGTAATG........................................................................................................................................................................................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0
................................................................................................................................................................................................................................................................................................................................................CCTACACATAGTCAGA.... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1
..................................................................................................................................ATCGATGTTTGTCAGG.................................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

ACGTCACGCAGGTCGTTGACCTAGACCTACGGTATTTCGGTCCGCTAGTCCACACATTACGGGCGTCGGGAGTTCAAAGCCGAAAACAAGCCAAATGTAGAATGATCTTTGAGATGTCGTGTCGATCGTGTAACTACAAACAGTCAATAAGCACCTTTTTGAATGTATGCAACAACGTTTATATATGTTAGGTATGTAAATAACTAAGGGTCTAGTGATAAAAGTAATGGGAGCAAATTTGTAACAATAATAAAACTCGTTTCTGTAGCGATTTTAAGTTCAAGATAAAATAAGGGCATGTATGTCTTGGCCTGCCTTTGAGGGTCTTCCGTGTTAGGTTGTGTATCAGTGTCGGT
**************************************************......(((((.(((.........))))))))..............................**************************************************************************************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 O001
Testis
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 M023
head
 M024
male body
......................................................................................................................................................................ATGCAACAACGTTTATATA........................................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................TCTTCCGTATTAGGTTG............... 17 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................CGATCTTTGAGAGGTCGTG........................................................................................................................................................................................................................................... 19 2 2 1.00 2 2 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................GTGTTAGGTTGGTTATCAGT...... 20 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................................................................................................AAGTCCAAGATAAAGTGAGGG............................................................ 21 3 2 1.00 2 0 0 0 1 0 0 1 0 0 0
..............................................................................................................................................................................................GGTATGTAAATAACTAAGGGT................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................AGTGATAAAAGTAACGAGAGAA......................................................................................................................... 22 3 5 0.80 4 0 4 0 0 0 0 0 0 0 0
...................................TTGGGTCCGCTAGTCCAT............................................................................................................................................................................................................................................................................................................... 18 2 2 0.50 1 0 0 0 0 0 1 0 0 0 0
......................................................................................................................................................................................................................GTGATAAAAGTAACGAGAGAAAA....................................................................................................................... 23 3 6 0.50 3 0 3 0 0 0 0 0 0 0 0
........................................................................................................................................................................ACAAGAACGCTTATATATGTT....................................................................................................................................................................... 21 3 3 0.33 1 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................AGTCCAAGATAAAGTGAGGG............................................................ 20 3 6 0.33 2 0 0 0 0 1 0 1 0 0 0
.......................................................................................................................................................................................................................................................................................................................................TCCGTATTAGGTTGCCTATC......... 20 3 6 0.33 2 0 0 0 0 0 0 0 2 0 0
.....................................................................................................................................................................................................................AGTGATAAAAGTAACGAGAGAAA........................................................................................................................ 23 3 3 0.33 1 0 1 0 0 0 0 0 0 0 0
......................................................CCTTACGGGGGTCGGGAGT........................................................................................................................................................................................................................................................................................... 19 2 4 0.25 1 0 0 0 0 0 0 0 0 1 0
...................................................................................................................................................................................................................................................................................AAGTTCATGATAAAGTGAGGG............................................................ 21 3 4 0.25 1 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................GGGAAGGTATGTCTTGG.............................................. 17 2 12 0.17 2 0 1 0 0 0 1 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................TCCGTATTAGGTTGTG............. 16 1 6 0.17 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................GTGATAAAAGTAACGAGAGAAA........................................................................................................................ 22 3 6 0.17 1 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................AAGTCCAAGATAAAGTGAGG............................................................. 20 3 8 0.13 1 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................CTTGTTAGGTTGTGAATC......... 18 2 8 0.13 1 0 0 0 0 0 1 0 0 0 0
.........................................................................................................TCTTTGAGATGTCCTGG.......................................................................................................................................................................................................................................... 17 2 8 0.13 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................TTCCGTATTAGGTTG............... 15 1 9 0.11 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................AGTCCAAGATAAAGTGAGG............................................................. 19 3 20 0.10 2 0 0 0 2 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................................CCGTGTTAGGTTGCGAA........... 17 2 12 0.08 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................ACGATCTTTGAGATG................................................................................................................................................................................................................................................ 15 1 13 0.08 1 0 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................................................................................................TTAAGTCCAAGATAA.................................................................... 15 1 14 0.07 1 0 0 0 0 0 0 1 0 0 0
...................................................................GGGAATTCAAAGTCGAAA............................................................................................................................................................................................................................................................................... 18 2 14 0.07 1 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................CTTGTTAGGTTGTGT............ 15 1 15 0.07 1 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................AGGATCTTCCTTGTTGGGT................. 19 3 18 0.06 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................AGATAAAATACGGGC........................................................... 15 1 18 0.06 1 0 0 0 0 0 0 1 0 0 0
........................................................................................................................................................................GCAACAAGGTATATAGATG......................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1
......................................................................................................................................................................................................................................................................................................................................CTCCGTGTTAGGTTGC.............. 16 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TGGTCTAGTGATACA...................................................................................................................................... 15 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................AGTTCTAGATAAAGTGAGG............................................................. 19 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:16381665-16382020 + dsi_13996 TGCAGTGCGTCCAGCAACTGGATCTGGATGCCATAAAGC---CAGGCG-ATCAGGTGTG----------TAATGCCC------GC-AGCCCTCAAGTTTCG----------GCTTTTGTTCGGTTTA-CATCT-----------TA-------CTAGAAACTCT------------------------------------------------------------------------------------------------------------------------------------------------------AC---AGCACAGCTAGCACATTGATGTTTGTCAGTTATTCGT---GGAAAAACTTACA--TAC------GTTGTTGCAAATATA----TACAATC--C-------------ATA----CATTTATTGAT-TCCCAGATCACTATTTTCATTACCCTCGTT----TAAA-----------CATT-GTT------ATTATTTTGAGCAAAGA--CATC-----------------------------------------------------------------------------GC-TAAAATTCAAGTTCT-A-TTTTA-TTCCC--GTAC--ATACAGAACCGGACGGAAACTCCCAGAAGGCACAATCCAACACATAGTCACA------------GCCA
droSec2 scaffold_0:17247020-17247375 + TGCAGTGCGTCCAGCAACTGGATCTGGATGCCATGATGC---CAGGCG-ATCAGGTGTG----------TAATGCTC------GC-AGCCCTCAAGTTTCG----------GCTTTTGTTCGGTTTA-CATCT-----------TA-------CTTGAAACTCT------------------------------------------------------------------------------------------------------------------------------------------------------AC---AGCACAGCTAGCACATTGATGTTTGTCAGTTATTCGT---GGAAAAACTTACA--TAC------GTTGTTGCAAATATA----TACAATC--C-------------ATA----CATTTATTGAT-TCCCAGCTCACTATTTTCATTACCCTTGTT----CAAA-----------CATT-GTT------ATTATTTTGAGCAAAGA--AATC-----------------------------------------------------------------------------GC-TAAAATTTAAGTTCT-A-TTTTA-TTCCC--GTAC--ATACAGAACCGGACGGAAACTCCCAGAAGGCACAATCCAACCCATAGTCACA------------GCCA
dm3 chr3R:4609833-4610211 - TGCAGTGCGTCCAGCAACTGGATCTGGATACCATGATGC---CAGGCG-ATCAGGTGTG----------TAATGCCC------GC-AGCCCTCAAGTTTCG----------GCTTTTGTTAGGTTTA-CACCTTACTAGCAACTTA-------CTAGAAACTCC------------------------------------------------------------------------------------------------------------------------------------------------------AC---AGCACAGCTAGCACATTAATGATTGTCAGATATTTGT---GGAGTAACTTACA--TAC------GTTGTTGCAAATATA----TACAATC--C-------------ATA----AATTTATTGAT-TCCCAGCTCACTATTTTCATTACTCTTATT----TAAA-----------CATT-GTT------AATATTTTGAGCAAAGA--AATC-----------------------------------------------------------------------------GC-TAAAATTCAAGTTTT-A-TTTTG-TTCCC--GTAC--ATACAGAACCGGACGGAAACTCCCAAAAGGCACAATTCAACCCACAGTCACAGTCACAGTCACAGCCA
droEre2 scaffold_4770:16976393-16976757 + TGCAGTGCGTCCAGCAGCTGGATCTGGACGCCATGATGC---CAGGCG-ATCAGGTGTG----------TAACGCCC---------------------TTG----------GTCCCTGTTATGTTGA-AATCT-----------TTTCCGTATTCACAAACTCC------------------------------------------------------------------------------------------------------------------------------------------------------AC---AGCATAGCTAGCATATAAATGTTTGTCAGTTATTCGT---GGAAAGGCCTACA--GACTTTCATGTTGTTGCAAACATA----TACAACC--C-------------GTA----TATTCATTGAG-TCCCAACTCACTATTTGCATTAACCTTGCTTGTTTAAAAAC----CA-CATAT-TTT------CTATTTTTGGCCAACGA--GATC-----------------------------------------------------------------------------AC-TAAAATTCCAGTCTT-A-TTTTA-CTCCC--GTCC--ACACAGAACCGCACGGAAACTCCCAGAAGACACAATCCAGCACATAGTCACA------------GCCA
droYak3 3R:8671186-8671498 - TGCAGTGCGTCCAGCAACTGGATCTGGATGCCATGATGC---CAGGCG-ATCAGGTGTG----------TAACGCCC------------------------CTTA------GCCCCAA----------------------------TACATATTCAGAAACTCC------------------------------------------------------------------------------------------------------------------------------------------------------AC---AGCATAGCTAGCACATTAATGTTTGTCAGTTATTCGT---GGAAAACCTTACA--GAC------GTTGTTGT--------------------C-------------ATA----TATTTATTGAG-TCCCAACTCACTATTTGCATTACCCTTACTTGTTTACA-----------------------------ACGAGGACAACGA--GGTC-----------------------------------------------------------------------------GC-TAAAATTCAAGTCTT-A-TTTTC-TTCCT--ATCC--ACACAGAACCGGACGGAAACTCCCAGAAGGCACAATCCAGCGCATAGTCACA------------GCCA
droEug1 scf7180000409490:112777-113099 + TGCAGTGCGTCCAGCAATTGGATCTGGATGCCATGATGC---CAGGCG-ATCAGGTGAG----------AAAAGATA------G--------------------------------------ATTGA-GTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT---ATCCCAGATGGCTCATTTATGTTTGTCAGTTAACCGT---AGAAA-CTTTATA--AAG------AGTTTGGCAAACAGAACA-AAAAAAC--A-------------ATA----TATTTATTGAT-AGCCAACT---TATTTTCATTATCTTTATTTGTTTTAAC------CAACACTT-ATG------AAAGTTTCGGACTAAGG--AGTT-----------------------------------------------------------------------------CC-TAAAATTCAAGTTTTTG-TTTCG-TTTTC--CATC--ACACAGAACCGGACGGAAGCTACACGGAGGCACAACCCAACCCAAAGTCACA------------ATCA
droBia1 scf7180000302402:7321131-7321382 - AGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAGCTAGCCCATTTATGTATGTCAGTTAACCGT---AGACAGCTTTACT--GAG------TGTTTTGCAAACATACAAATACAATC--C-------------ATA----TATTTATTGAT-ACCCCAGT---TATTTCCATTAGCTTCATTCGTTTTAGC------CA-CCCTT-ATG------AAAATTTCGGACTAAGA--AATC-----------------------------------------------------------------------------GC-AAAAATTCAAGTTTT-G-TTTTA-TTTTTC-GCCCAAAAACAGAACCGCACGGAAACCCACCGGAGGCACAACCCAACCCAAAGTCATA------------GTCA
droTak1 scf7180000414009:214606-214855 + ACTA--------------------------------------------------------------------------------------------------------------------------------------------------------TAAATCCC------------------------------------------------------------------------------------------------------------------------------------------------ATCATTTT---AGCATAGCTAGCCCATTTATGTTTGTCAGTTACTCTT---AAAAAACA-AAAGCAGAG------AGTTTTGCGAGCATA----TACAACC--C-------------ACA----TATTTATTGAT-AGCCAACA---TATTTCCCTTAGCTTTACTCGTTTTAAC------CG-CCCTT-ATG------AATATTTTGGACTAAGA--AATC-----------------------------------------------------------------------------GC-TAAAATTTAAGTTTC-G-TTTTA-TTTTTCCACGC--ACACAGAGCCACCAG---------CGAAGGCCCAA---------CAACCCAA------------CCCA
droEle1 scf7180000491212:1188109-1188526 + TGCAGTGCGTCCAGCAACTGGACCTGGATGCCAAGATGC---CAGGCG-ATCAGGTGTG----------TATAAGCC------------------------CTT--------------------------------------------------------------------------------------------------CTAGCATTGAGCTAATTTTACTTGACGTTTAAAACTGAATTGTTAACCCGAATATAACTTTTGTCTGAAAGTCACCTCATTCTCCCCATCTCTAAATATAAATCATATTTCATT---ATCATGGCTACCTCAGAAATGTCTGTCAGTTAATCGT---AGAAAACACAACG--TAG----------------ACATA----TACAATC--T-------------ATATACAAAGATACTGAT-ACCAAACT---TCT-TCCTTTTTCTTTAGTTGTTTTAAC------CA-GCTTA-ATG------CAAATTTCGGACTAAGAAAAATC-----------------------------------------------------------------------------GC-TTAAATTAAAGTTTT-G-TTTTA-TTTGTT-TGCT--ATACAGAACCGGACGGAAACTCCGCGGAGGCACAACCCAACTCAAAGTCACA------------A---
droFic1 scf7180000454106:2558885-2559216 + TGCAGTGCGTCCAGCAACTGGACCTGGACGCCATGACGT---CAGACA-ATCAGGTGGG----------TGAAACTCCA-GTTGAAGTA------------------------------------------CT-----------TA-------ACCCAACTTCA------------------------------------------------------------------------------------------------------------------------------------------------------AT---ACCACAGCCATCCCAGTCATGTTTGTCAGTTGATTGTAGTGGAAAACGTAACG--GAG------TGTCTTGCCAACATA----TACAACC--C-------------ACA----AAGAT-----T-ACCCAACT---TGT-TCCCTTAC-TTTAC-CTTTTTAAC------CT-ACTTG-ATG------AACCTTTCGGACTAAGG--AATC-----------------------------------------------------------------------------CC-TAAAATTCACGTTGT-G-TTGTA-CTCTTT-CCCC--ACACAGAACCGCACGGAGACTCCCCGGAGGCACAACCAAACCCAAAGTCACA------------ACCA
droKik1 scf7180000302247:283475-283891 + TCATATAAATTTACAAGCTATGTTTTGATTCTATTCCTT---CTGATCCATAGTCTGTT----------TCAGTTACTT-GTTGAAGATCTTTAAATCTTA----------AATTTAATTAAATTTGGTAGTTTGTTAGGATATTT-------TTGTGAAATAT-----------------------------------------------------------------------------------------------------------------------------------------AAAAGATACTTTCTTATTTTCTGAGCCACCCCAGTCCAGTTTGTCAGTTATCTGT---AGAAAGTCATTCGTAGAA------TGTGTTACGGACACACACACACACCCTT-CTTTATTT-----AGATATATAAACACGGAT-ATCCCAGT---TATTCTCA-CACTTTTGCTTGTTCAAAT------GA-CCTTT-TTG------AT-----CAGATATCGC--GACCGCGTTTTCCGC------------------------------------------------------------------GCAAAAAATTAAAGTTTT-T-TACTA-TTTT---TCGC--ACCCAGAAC---ACGCACGCCCGACGGCCGAGTAACCAAACCCAAAGTCACA------------GCCA
droAna3 scaffold_13340:11019733-11020075 - TGAACTGCGTCCAGCAGCTCGACCTCGATTCGATGATGA---CAGGAG-AACAGGTGCG----------TAAAATTTACTAT-------------------------------------------------------------------------TGAAACCCA------------------------------------------------------------------------------------------------------------------------------------------------------AGACAGGCGTAGGTAGCCCAGTCAAGTTTGTCAGTTGATCGA---AGAGCCCTAAACG--TAG------AATTAAGCGAATAAAAACTTACAATATT-CAATATTTATTTT-GATA------TATTGGT-AGTCGAGC---CACATCCA-CAGATTTTCTTATTTTAAC------CA-AACTT-TCA------AATTTTTCGATTATCGC--GATCGGTACTTCCCG------------------------------------------------------------------GC-TAAAATTCAAGTTTT-G-TTTTA-TTTTC--CCGC--ACATAGAACCACACGGAATCCCCACGAAGGCACC---------ACAATCAGA------------ACCA
droBip1 scf7180000396374:62934-63264 + TGCACTGCGTTCAGCAGCTGGACCTGGATTCAATGATGA---CAGGAG-AACAGGTGGG----------TAAAATAT-------------------------------------------------------------------AA-------CTATATGTAGA------------------------------------------------------------------------------------------------------------------------------------------------------CA---AGCCTAGGTAGCTCAGTCAAGTTTGTCAGTTGATCAG---AGAACCCTAGACG--TAG------AATTATGCGAATAAGAACTCACAATATT-ATATATTTATTTA-GATA------TATTGGT-AGTCGAGC---CACTTCCA-CAGATTTTCTTATTTTAAC------CA-CACTTTCCC------AACCTTTTGATTATCGC--GATCGGTATTGTCCG------------------------------------------------------------------GC-TAAAATTCAAGTTTC-G-TTTTA-TTCCC--GTCC----GTAGAACCCCACGGAGAGCCCACGAAGGCACCAAC----------------------------ACA
dp5 2:27265934-27265993 - TGCAGTGCGTCCAGCAATTGGATCTGGATGCCATGATGCCGTCAGCCG-AACAGGTGTG----------TA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_6:2555961-2556020 - TGCAGTGCGTCCAGCAGTTGGATCTGGATGCCATGATGCCGTCAGCCG-AACAGGTGTG----------TA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004902:4607456-4607760 - TTCAGTGTGTGCAACAACTCGATCTTGACGCCGGGATGC---CTGTTG-ATCAGGTGAG----------TTTCAGTT------------------------TTAAATGTCATATACAAAAAAA------------------------TAATATTAAAAAACACCAAAACAAAAAAAAAACACATTTATTTCCATCAACATTTATGGCCTTACATGGCTTTTAATACACATTTTAAATAAACTTGCTACCCCT--------------------------------------------------------------------------CAACCCCAAACATTTTTG-----------------------------------------------------------------------------------------------------------------------AAACAATTGATTGTATAAAATTTAACCA-AAGTG-AAATATTTTGTCT-------------------------------------------------------------------------------------------------------------TTTTC-GTTTTTTGTTTTC--T-GC-AGAGCAAATCCGAGCGT--------ACAAGGCACAATC-------------------------------
droVir3 scaffold_13047:1869996-1870029 + TGATGTGCGTACAGCAACTGGATCTGGATGCGAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6540:3800419-3800763 + TGCTGTGCGTGCAGCAGCTCGATCTAGATGCGGTCGTGGAG-CAGGAG-AGCTGGCAGTCAACGGTGCGTATATACT------------------------CTAAACGAAATGTACAA----ATTGA-GTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG---AGTGTAGAAGGTGTGTCTGTCTGTGTCGGT---------------------------------------------------------------GTGTGTGTGTTTA-GATG------TAGTCAGAAGTCAGTC---AGTAGTTA-GGAATTTTTTGATTTTG----------------------------------AGTGATCGA--GATTTATATTTTGACCCCAGCAGAGGCAGACAGTTTTTTAATCCTTAAGAAAATCAATAACCACACATAAACATTTCTAGAAC-ATAAATTCAAGTGCG-G-CTTCT-TGCTC--TTGC--AGACGAA----GGCGGAACCACGGACGAGGCACAGTC-------------------------------
droGri2 scaffold_14906:8705943-8705976 + TGCTGTGCGTGCAACAGCTCGATCTGGATGCGAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TGCAGTGCGTCCAGCAACTGGATCTGGATGCCATAAAGC---CAGGCG-ATCAGGTGTG----------TAATGCCC------GC-AGCCCTCAAGTTTCG----------GCTTTTGTTCGGTTTA-CATCT-----------TA-------CTAGAAACTCT------------------------------------------------------------------------------------------------------------------------------------------------------AC---AGCACAGCTAGCACATTGATGTTTGTCAGTTATTCGT---GGAAAAACTTACA--TAC------GTTGTTGCAAATATA----TACAATC--C-------------ATA----CATTTATTGAT-TCCCAGATCACTATTTTCATTACCCTCGTT----TAAA-----------CATT-GTT------ATTATTTTGAGCAAAGA--CATC-----------------------------------------------------------------------------GC-TAAAATTCAAGTTCT-A-TTTTA-TTCCC--GTAC--ATACAGAACCGGACGGAAACTCCCAGAAGGCACAATCCAACACATAGTCACA------------GCCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGACGGAAACTCCCAGAAGGCACA..................................2513.00321000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCGGACGGAAACTCCCAGAAG.......................................2412.00200000000000002000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGGACGGAAACTCCCAGAA........................................2111.00100100000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCGGACGGAAACTCCCAGAAGG......................................2511.00110000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGACGGAAACTCCCAGAA........................................2011.00110000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGGACGGAAACTCCCAGA.........................................2011.00101000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTT------ATTATTTTGAGCAAAGA--C............................................................................................................................................................................................2111.00100001000000000000
....GTGCGTCCAGCAACTGGATCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTA-TTCCC--GTAC--ATACAG..............................................................1911.00110000000000000000
...AGTGCGTCCAGCAACTGGATCTGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCGGACGGAAACTCCC............................................1911.00110000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGGACGGAAACTCCCAGAAGG......................................2311.00100100000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCGGACGGAAACTCC.............................................1811.00101000000000000000
droSec2
TGCAGTGCGTCCAGCAACTGGATCTGGATGCCATGATGC---CAGGCG-ATCAGGTGTG----------TAATGCTC------GC-AGCCCTCAAGTTTCG----------GCTTTTGTTCGGTTTA-CATCT-----------TA-------CTTGAAACTCT------------------------------------------------------------------------------------------------------------------------------------------------------AC---AGCACAGCTAGCACATTGATGTTTGTCAGTTATTCGT---GGAAAAACTTACA--TAC------GTTGTTGCAAATATA----TACAATC--C-------------ATA----CATTTATTGAT-TCCCAGCTCACTATTTTCATTACCCTTGTT----CAAA-----------CATT-GTT------ATTATTTTGAGCAAAGA--AATC-----------------------------------------------------------------------------GC-TAAAATTTAAGTTCT-A-TTTTA-TTCCC--GTAC--ATACAGAACCGGACGGAAACTCCCAGAAGGCACAATCCAACCCATAGTCACA------------GCCASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
................................ATGATGC---CAGGCG-ATCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
................................ATGATGC---CAGGCG-ATCAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCAGAAGGCACAATCCA.............................1911.0010001
...........CAGCAACTGGATCTGGATGCCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCGGACGGAAACTCCCAGAA........................................2311.0010001
...AGTGCGTCCAGCAACTGGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
dm3
TGCAGTGCGTCCAGCAACTGGATCTGGATACCATGATGC---CAGGCG-ATCAGGTGTG----------TAATGCCC------GC-AGCCCTCAAGTTTCG----------GCTTTTGTTAGGTTTA-CACCTTACTAGCAACTTA-------CTAGAAACTCC------------------------------------------------------------------------------------------------------------------------------------------------------AC---AGCACAGCTAGCACATTAATGATTGTCAGATATTTGT---GGAGTAACTTACA--TAC------GTTGTTGCAAATATA----TACAATC--C-------------ATA----AATTTATTGAT-TCCCAGCTCACTATTTTCATTACTCTTATT----TAAA-----------CATT-GTT------AATATTTTGAGCAAAGA--AATC-----------------------------------------------------------------------------GC-TAAAATTCAAGTTTT-A-TTTTG-TTCCC--GTAC--ATACAGAACCGGACGGAAACTCCCAAAAGGCACAATTCAACCCACAGTCACAGTCACAGTCACAGCCASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCACAGTCACAGTCACAGCC.2218.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGCACAATTCAACCCACAGTC...................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAACCCACAGTCACAGTC.............2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...AGTGCGTCCAGCAACTGGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......GCGTCCAGCAACTGGATCTGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGCACAATTCAACCCACAGTCAC.................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.GCAGTGCGTCCAGCAACTGGATCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCAAGTTTT-A-TTTTG-TTCCC--GT........................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
............AGCAACTGGATCTGGATACCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
......................................................GTGTG----------TAATGCCC------GC-AGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................ACTGGATCTGGATACCATGATGC---ATC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAC--ATACAGAACCGGACGGA...................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
............AGCAACTGGATCTGGATACC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TGCAGTGCGTCCAGCAACTGGATCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................CTGGATACCATGATGC---CAGGCG-AT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.GCAGTGCGTCCAGCAACTGGATCTGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGCACAATTCAACCCACA......................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTGAGCAAAGA--AATC-----------------------------------------------------------------------------GC-T........................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
....GTGCGTCCAGCAACTGGATCTGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCACAGTCACAGTCACAGTCACA....2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACCGGACGGAAACTA..............................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.................................TGATGC---CAGGCG-ATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2080.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
..................................GATGC---CAGGCG-ATCAGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1890.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TGCAGTGCGTCCAGCAGCTGGATCTGGACGCCATGATGC---CAGGCG-ATCAGGTGTG----------TAACGCCC---------------------TTG----------GTCCCTGTTATGTTGA-AATCT-----------TTTCCGTATTCACAAACTCC------------------------------------------------------------------------------------------------------------------------------------------------------AC---AGCATAGCTAGCATATAAATGTTTGTCAGTTATTCGT---GGAAAGGCCTACA--GACTTTCATGTTGTTGCAAACATA----TACAACC--C-------------GTA----TATTCATTGAG-TCCCAACTCACTATTTGCATTAACCTTGCTTGTTTAAAAAC----CA-CATAT-TTT------CTATTTTTGGCCAACGA--GATC-----------------------------------------------------------------------------AC-TAAAATTCCAGTCTT-A-TTTTA-CTCCC--GTCC--ACACAGAACCGCACGGAAACTCCCAGAAGACACAATCCAGCACATAGTCACA------------GCCASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...AGTGCGTCCAGCAGCTGGATCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000020
...AGTGCGTCCAGCAGCTGGATC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAACTCCCAGAAGACACAATCCA.............................2611.0011000000
..........................GACGCCATGATGC---CAGGCG-ATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAAGACACAATCCAGCACATAGT....................2511.0010000010
.............................GCCATGATGC---CAGGCG-ATCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAAGACACAATCCAGCACAT.......................2211.0010100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACACAATCCAGCACATAGTCAC.................2411.0011000000
............AGCAGCTGGATCTGGACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
.................................TGATGC---CAGGCG-ATCAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1821.0020000020
...............AGCTGGATCTGGACGCCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
.....................ATCTGGACGCCATGATGC---CAGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAACCGCACGGAAACTCCCAGA.........................................2411.0011000000
droYak3
TGCAGTGCGTCCAGCAACTGGATCTGGATGCCATGATGC---CAGGCG-ATCAGGTGTG----------TAACGCCC------------------------CTTA------GCCCCAA----------------------------TACATATTCAGAAACTCC------------------------------------------------------------------------------------------------------------------------------------------------------AC---AGCATAGCTAGCACATTAATGTTTGTCAGTTATTCGT---GGAAAACCTTACA--GAC------GTTGTTGT--------------------C-------------ATA----TATTTATTGAG-TCCCAACTCACTATTTGCATTACCCTTACTTGTTTACA-----------------------------ACGAGGACAACGA--GGTC-----------------------------------------------------------------------------GC-TAAAATTCAAGTCTT-A-TTTTC-TTCCT--ATCC--ACACAGAACCGGACGGAAACTCCCAGAAGGCACAATCCAGCGCATAGTCACA------------GCCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...AGTGCGTCCAGCAACTGGATCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22122.0022010000000021
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCGGACGGAAACTCCCAGAAGGCAC...................................2711.00101000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGACGGAAACTCCCAGAAGGC.....................................2311.00110000000000
....GTGCGTCCAGCAACTGGATCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAGAAGGCACAATCCAGCGCATAGT....................2711.00100000010000
............................TGCCATGATGC---CAGGCG-ATCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
droEug1
TGCAGTGCGTCCAGCAATTGGATCTGGATGCCATGATGC---CAGGCG-ATCAGGTGAG----------AAAAGATA------G--------------------------------------ATTGA-GTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT---ATCCCAGATGGCTCATTTATGTTTGTCAGTTAACCGT---AGAAA-CTTTATA--AAG------AGTTTGGCAAACAGAACA-AAAAAAC--A-------------ATA----TATTTATTGAT-AGCCAACT---TATTTTCATTATCTTTATTTGTTTTAAC------CAACACTT-ATG------AAAGTTTCGGACTAAGG--AGTT-----------------------------------------------------------------------------CC-TAAAATTCAAGTTTTTG-TTTCG-TTTTC--CATC--ACACAGAACCGGACGGAAGCTACACGGAGGCACAACCCAACCCAAAGTCACA------------ATCASizeHit CountTotal NormTotal
No Reads
droBia1
AGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAGCTAGCCCATTTATGTATGTCAGTTAACCGT---AGACAGCTTTACT--GAG------TGTTTTGCAAACATACAAATACAATC--C-------------ATA----TATTTATTGAT-ACCCCAGT---TATTTCCATTAGCTTCATTCGTTTTAGC------CA-CCCTT-ATG------AAAATTTCGGACTAAGA--AATC-----------------------------------------------------------------------------GC-AAAAATTCAAGTTTT-G-TTTTA-TTTTTC-GCCCAAAAACAGAACCGCACGGAAACCCACCGGAGGCACAACCCAACCCAAAGTCATA------------GTCASizeHit CountTotal NormTotal
No Reads
droTak1
ACTA--------------------------------------------------------------------------------------------------------------------------------------------------------TAAATCCC------------------------------------------------------------------------------------------------------------------------------------------------ATCATTTT---AGCATAGCTAGCCCATTTATGTTTGTCAGTTACTCTT---AAAAAACA-AAAGCAGAG------AGTTTTGCGAGCATA----TACAACC--C-------------ACA----TATTTATTGAT-AGCCAACA---TATTTCCCTTAGCTTTACTCGTTTTAAC------CG-CCCTT-ATG------AATATTTTGGACTAAGA--AATC-----------------------------------------------------------------------------GC-TAAAATTTAAGTTTC-G-TTTTA-TTTTTCCACGC--ACACAGAGCCACCAG---------CGAAGGCCCAA---------CAACCCAA------------CCCASizeHit CountTotal NormTotal
No Reads
droEle1
TGCAGTGCGTCCAGCAACTGGACCTGGATGCCAAGATGC---CAGGCG-ATCAGGTGTG----------TATAAGCC------------------------CTT--------------------------------------------------------------------------------------------------CTAGCATTGAGCTAATTTTACTTGACGTTTAAAACTGAATTGTTAACCCGAATATAACTTTTGTCTGAAAGTCACCTCATTCTCCCCATCTCTAAATATAAATCATATTTCATT---ATCATGGCTACCTCAGAAATGTCTGTCAGTTAATCGT---AGAAAACACAACG--TAG----------------ACATA----TACAATC--T-------------ATATACAAAGATACTGAT-ACCAAACT---TCT-TCCTTTTTCTTTAGTTGTTTTAAC------CA-GCTTA-ATG------CAAATTTCGGACTAAGAAAAATC-----------------------------------------------------------------------------GC-TTAAATTAAAGTTTT-G-TTTTA-TTTGTT-TGCT--ATACAGAACCGGACGGAAACTCCGCGGAGGCACAACCCAACTCAAAGTCACA------------A---SizeHit CountTotal NormTotal
No Reads
droFic1
TGCAGTGCGTCCAGCAACTGGACCTGGACGCCATGACGT---CAGACA-ATCAGGTGGG----------TGAAACTCCA-GTTGAAGTA------------------------------------------CT-----------TA-------ACCCAACTTCA------------------------------------------------------------------------------------------------------------------------------------------------------AT---ACCACAGCCATCCCAGTCATGTTTGTCAGTTGATTGTAGTGGAAAACGTAACG--GAG------TGTCTTGCCAACATA----TACAACC--C-------------ACA----AAGAT-----T-ACCCAACT---TGT-TCCCTTAC-TTTAC-CTTTTTAAC------CT-ACTTG-ATG------AACCTTTCGGACTAAGG--AATC-----------------------------------------------------------------------------CC-TAAAATTCACGTTGT-G-TTGTA-CTCTTT-CCCC--ACACAGAACCGCACGGAGACTCCCCGGAGGCACAACCAAACCCAAAGTCACA------------ACCASizeHit CountTotal NormTotal
No Reads
droKik1
TCATATAAATTTACAAGCTATGTTTTGATTCTATTCCTT---CTGATCCATAGTCTGTT----------TCAGTTACTT-GTTGAAGATCTTTAAATCTTA----------AATTTAATTAAATTTGGTAGTTTGTTAGGATATTT-------TTGTGAAATAT-----------------------------------------------------------------------------------------------------------------------------------------AAAAGATACTTTCTTATTTTCTGAGCCACCCCAGTCCAGTTTGTCAGTTATCTGT---AGAAAGTCATTCGTAGAA------TGTGTTACGGACACACACACACACCCTT-CTTTATTT-----AGATATATAAACACGGAT-ATCCCAGT---TATTCTCA-CACTTTTGCTTGTTCAAAT------GA-CCTTT-TTG------AT-----CAGATATCGC--GACCGCGTTTTCCGC------------------------------------------------------------------GCAAAAAATTAAAGTTTT-T-TACTA-TTTT---TCGC--ACCCAGAAC---ACGCACGCCCGACGGCCGAGTAACCAAACCCAAAGTCACA------------GCCASizeHit CountTotal NormTotal
No Reads
droAna3
TGAACTGCGTCCAGCAGCTCGACCTCGATTCGATGATGA---CAGGAG-AACAGGTGCG----------TAAAATTTACTAT-------------------------------------------------------------------------TGAAACCCA------------------------------------------------------------------------------------------------------------------------------------------------------AGACAGGCGTAGGTAGCCCAGTCAAGTTTGTCAGTTGATCGA---AGAGCCCTAAACG--TAG------AATTAAGCGAATAAAAACTTACAATATT-CAATATTTATTTT-GATA------TATTGGT-AGTCGAGC---CACATCCA-CAGATTTTCTTATTTTAAC------CA-AACTT-TCA------AATTTTTCGATTATCGC--GATCGGTACTTCCCG------------------------------------------------------------------GC-TAAAATTCAAGTTTT-G-TTTTA-TTTTC--CCGC--ACATAGAACCACACGGAATCCCCACGAAGGCACC---------ACAATCAGA------------ACCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................TCGATTCGATGATGA---CAGGAG-AACAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACGGAATCCCCACGAAGGCACC---------.........................2411.001000001
................GCTCGACCTCGATTCGATGATGA---CAGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
............AGCAGCTCGACCTCGATTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGAATCCCCACGAAGGCACC---------ACAAT....................2711.001000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATCCCCACGAAGGCACC---------.........................2011.001000001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACACGGAATCCCCACGAAGG......................................2311.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGAAGGCACC---------ACAATCAGA------------ACC.2411.001000001
.....TGCGTCCAGCAGCTCGACCTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
...............................GATGATGA---CAGGAG-AACAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
droBip1
TGCACTGCGTTCAGCAGCTGGACCTGGATTCAATGATGA---CAGGAG-AACAGGTGGG----------TAAAATAT-------------------------------------------------------------------AA-------CTATATGTAGA------------------------------------------------------------------------------------------------------------------------------------------------------CA---AGCCTAGGTAGCTCAGTCAAGTTTGTCAGTTGATCAG---AGAACCCTAGACG--TAG------AATTATGCGAATAAGAACTCACAATATT-ATATATTTATTTA-GATA------TATTGGT-AGTCGAGC---CACTTCCA-CAGATTTTCTTATTTTAAC------CA-CACTTTCCC------AACCTTTTGATTATCGC--GATCGGTATTGTCCG------------------------------------------------------------------GC-TAAAATTCAAGTTTC-G-TTTTA-TTCCC--GTCC----GTAGAACCCCACGGAGAGCCCACGAAGGCACCAAC----------------------------ACASizeHit CountTotal NormTotal
No Reads
dp5
TGCAGTGCGTCCAGCAATTGGATCTGGATGCCATGATGCCGTCAGCCG-AACAGGTGTG----------TA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................ATTGGATCTGGATGCCATGATGCCGTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010010000000
..........................GATGCCATGATGCCGTCAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100000
...........................ATGCCATGATGCCGTCAGCCG-AAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
..........................GATGCCATGATGCCGTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.GCAGTGCGTCCAGCAATTGGATCTGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
...........................ATGCCATGATGCCGTCAGCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...................................ATGCCGTCAGCCG-AACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
droPer2
TGCAGTGCGTCCAGCAGTTGGATCTGGATGCCATGATGCCGTCAGCCG-AACAGGTGTG----------TA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............AGCAGTTGGATCTGGATGCCATGATGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.002200000
.............GCAGTTGGATCTGGATGCCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
droWil2
TTCAGTGTGTGCAACAACTCGATCTTGACGCCGGGATGC---CTGTTG-ATCAGGTGAG----------TTTCAGTT------------------------TTAAATGTCATATACAAAAAAA------------------------TAATATTAAAAAACACCAAAACAAAAAAAAAACACATTTATTTCCATCAACATTTATGGCCTTACATGGCTTTTAATACACATTTTAAATAAACTTGCTACCCCT--------------------------------------------------------------------------CAACCCCAAACATTTTTG-----------------------------------------------------------------------------------------------------------------------AAACAATTGATTGTATAAAATTTAACCA-AAGTG-AAATATTTTGTCT-------------------------------------------------------------------------------------------------------------TTTTC-GTTTTTTGTTTTC--T-GC-AGAGCAAATCCGAGCGT--------ACAAGGCACAATC-------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGAGCGT--------ACAAGGCACA..................................1913.00330000
..........................GACGCCGGGATGC---CTGTTG-ATCAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100001
..................TCGATCTTGACGCCGGGAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100001
....GTGTGTGCAACAACTCGATCTTGACGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00110000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGAGCGT--------ACAAGGCACAATC-------------------------------2211.00110000
...........CAACAACTCGATCTTGACGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000
.....TGTGTGCAACAACTCGATCTTGACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00110000
................................GGGATGC---CTGTTG-ATCAGAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2130.33100100
droVir3
TGATGTGCGTACAGCAACTGGATCTGGATGCGAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............AACTGGATCTGGATGCGAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1912.002000000000100000000000000000000000000000000000000000000000000100
.GATGTGCGTACAGCAACTGGATCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
..............CAACTGGATCTGGATGCGAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2011.001000000000000000000000000000000000000000000000000000000000000100
.GATGTGCGTACAGCAACTGGATC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000001
droMoj3
TGCTGTGCGTGCAGCAGCTCGATCTAGATGCGGTCGTGGAG-CAGGAG-AGCTGGCAGTCAACGGTGCGTATATACT------------------------CTAAACGAAATGTACAA----ATTGA-GTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG---AGTGTAGAAGGTGTGTCTGTCTGTGTCGGT---------------------------------------------------------------GTGTGTGTGTTTA-GATG------TAGTCAGAAGTCAGTC---AGTAGTTA-GGAATTTTTTGATTTTG----------------------------------AGTGATCGA--GATTTATATTTTGACCCCAGCAGAGGCAGACAGTTTTTTAATCCTTAAGAAAATCAATAACCACACATAAACATTTCTAGAAC-ATAAATTCAAGTGCG-G-CTTCT-TGCTC--TTGC--AGACGAA----GGCGGAACCACGGACGAGGCACAGTC-------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...............AGCTCGATCTAGATGCGGTCGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2313.003200001
...................................GTGGAG-CAGGAG-AGCTGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.003100002
..........................................CAGGAG-AGCTGGCAGTCAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
........................TAGATGCGGTCGTGGAG-CA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000
...............AGCTCGATCTAGATGCGGTCGTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
.............GCAGCTCGATCTAGATGCGGTCGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAA----GGCGGAACCACGGACGAG.......................................2311.001000100
............AGCAGCTCGATCTAGATGCGGTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
............AGCAGCTCGATCTAGATGCGGTCGTGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGAA----GGCGGAACCACGGACGAGGCAC...................................2811.001000001
................................GTCGTGGAG-CAGGAG-AGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGAACCACGGACGAGGCA....................................2011.001001000
......................................GAG-CAGGAG-AGCTGGCAGTCAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGGAACCACGGACGAGGC.....................................2011.001100000
droGri2
TGCTGTGCGTGCAACAGCTCGATCTGGATGCGAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 01:07 AM