ID:

dsi_13962

 Coordinate:

x:11980426-11980575 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-36.6 -36.6 -36.5

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
(TCC)nSimple_repeatSimple_repeat+

Sense Strand Reads

ATGTCCGCGTATCAGCAACGCCTGCCATCAAATGCAGCATCCATTCACAGGTGAGTGCCAAAGTTGGCAACAATCCATACATNGGAGGAGGAGGAGGAGGCGGCGGAGGAGGAGGAGGAGGAGGAAGGAGCATCCTAATGCAAGGCAGCAATCAAACGCAACCATTTCCACGCGGTAAATTTCCGCAGCAAAGCTCATTTCCTGTCTGCTGTCTTTTCCAGCCTATTCGCAACTAGTTTTCCACTCACCT
**************************************************((((((((((....)))))....(((.......)))......(((((.((..(((...((........((((..........))))..(((......))).))...)))..)).)))))..((((.......)))).......)))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 M053
female body
 M023
head
 SRR902008
ovaries
 O002
Head
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
 M025
embryo
 M024
male body		 O001
Testis
 SRR553488
RT_0-2 hours eggs
.............................................................................................GAGGAGGCGGCGGAGGAGGAGGAGGAG.................................................................................................................................. 27 0 1 16.00 16 15 0 1 0 0 0 0 0 0 0 0
................................................................................................GAGGCGGCGGAGGAGGAGGAGGAGGAA............................................................................................................................... 27 1 1 9.00 9 8 0 0 1 0 0 0 0 0 0 0
.......................................................................................................CGGCGGAGGAGGAGGAGGAGGAAGGAG........................................................................................................................ 27 1 1 6.00 6 6 0 0 0 0 0 0 0 0 0 0
.......................................................................................GAGGAGGAGGAGGCGGCGGAGGAGGAG........................................................................................................................................ 27 0 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0
..........................................................................................GAGGAGGAGGCGGCGGAGGAGGAGGAG..................................................................................................................................... 27 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0
................................................................................................GAGGCGGCGGAGGAGGAGGAGGAGG................................................................................................................................. 25 0 1 2.00 2 0 0 1 0 0 0 0 0 1 0 0
...........................................................................................AGGAGGAGGCGGCGGAGGAGGAGGAG..................................................................................................................................... 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
..............................................................................................AGGAGGCGGCGGAGGAGGAGGAGGAG.................................................................................................................................. 26 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
.....................................................................................AGGAGGAGGAAGAGGCGGC.................................................................................................................................................. 19 1 10 1.80 18 18 0 0 0 0 0 0 0 0 0 0
....................................................................................................CGGCGGAGGAGGAGGAGGAGGA................................................................................................................................ 22 0 3 1.33 4 4 0 0 0 0 0 0 0 0 0 0
.........................................................................................GGAGGAGGAGGCGGCGGAGGAGGA......................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................GAGGAGGAGGAGGAAGGAGCAT..................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................GGAGGAGGAGGAAGGAGCA...................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................GCGGCGGAGGAGGAGGAGGAGGAAGGAG........................................................................................................................ 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................AGGAGGAGGAGGAAGGAGCA...................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................AGGCGGCGGAGGAGGAGGAGGAGGA................................................................................................................................ 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................GCGGCGGAGGAGGAGGAGGAGGAAGGA......................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................AGGAGGAGGAGGCGGCGGAGGGGGAG........................................................................................................................................ 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................GAGGAGGCGGCGGAGGGGGAGGAGGAG.................................................................................................................................. 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................GGAGGAGGAGGAGGAGGAGGAAGGAG........................................................................................................................ 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
......................................................................................GGAGGAGGAGGAGGCGGCGGAGGA............................................................................................................................................ 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................AGGAGGAGGAGGCGGCGGAGGAGGAG........................................................................................................................................ 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................AGGCGGCGGAGGAGGAGGAGGAGGAG............................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................GAGGAGGCGGCGGAGGAGGAGGAGGAGAA................................................................................................................................ 29 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................GCGGCGGAGGAGGAGGAGGAGGAG............................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.............................AAATGCAGCATCCATTCACAG........................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................................GCGGAGGAGGAGGAGGAGGAAGGAG........................................................................................................................ 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................GCGGCGGAGGAGGAGGAGGAGGAGGAAG........................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
................................................................................................GAGGCGGCGGAGGAGGAGGAGGAGGAG............................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
................................................................................................GAGGCGGCGGAGGAGGAGGAGGAGGAGGA............................................................................................................................. 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................GCGGAGGAGGAGGAGGAGGAAGGAGCAT..................................................................................................................... 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................GCGGAGGAGGAGGAGGAGGAAGGAGCA...................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................TCGGCGGAGGAGGAGGAGGAGGAGGAAG........................................................................................................................... 28 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................AGGAGGAGGCGGCGGAGGAGGA......................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................GAGGCGGCGGAGGAGGACGAGGAGGAG............................................................................................................................... 27 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................GGAGGCGGCGGAGGAGGAGGAGGA................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................GAGGAGGCGGCGGAGGAGGAGGAGGAGGA................................................................................................................................ 29 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................GGCGGAGGAGGAGGAGGAGGAAGGAG........................................................................................................................ 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................GGCGGCGGAGGAGGAGGAGGA................................................................................................................................... 21 0 6 0.67 4 0 0 0 0 4 0 0 0 0 0 0
..........................................................................................GAGGAGGAGGCGGCGGAGG............................................................................................................................................. 19 0 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0
................................................................................................GAGGCGGCGGAGGAGGAG........................................................................................................................................ 18 0 4 0.50 2 0 0 0 0 2 0 0 0 0 0 0
................................................................................................GAGGCGGCGGAGGAGGAGGA...................................................................................................................................... 20 0 4 0.50 2 0 0 0 0 2 0 0 0 0 0 0
................................................................................................GAGGCGGCGGAGGAGGAGGAGG.................................................................................................................................... 22 0 4 0.50 2 0 0 0 0 2 0 0 0 0 0 0
...................................................................................GGAGGAGGAGGAGGAGGCGGC.................................................................................................................................................. 21 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................GAGGAGGCGGCGGAGGAGGAGGAG..................................................................................................................................... 24 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................GGCGGAGGAGGAGGAGGAGGAAGGA......................................................................................................................... 25 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................GCGGCGGAGGAGGAGGAGGAGGAA............................................................................................................................ 24 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................GCGGCGGAGGAGGAGGAGGAGGAA............................................................................................................................... 24 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................................GAGGAGGAGGAATGAGCA...................................................................................................................... 18 1 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0
................................................................................................GAGGCTGCGGAGGAGGAGGAGGAGGA................................................................................................................................ 26 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................AGGAGGAGGAAGAGGCGGCCGA............................................................................................................................................... 22 2 7 0.43 3 3 0 0 0 0 0 0 0 0 0 0
.............................................................................................GAGGAGGCGGCGGAGGAGGAGGAGGG................................................................................................................................... 26 1 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0
.......................................................................................GAGGAGGAGGAGGCGGCGG................................................................................................................................................ 19 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................AGAAGGAGGAGGAGGCGGCG................................................................................................................................................. 20 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................GGAGGCGGCGGAGGAGGAGGAGG.................................................................................................................................... 23 0 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................CGGCGGAGGAGGAGGAGGGGGA................................................................................................................................ 22 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................GAGGAGGAGGAGGAGGAGGACGGA......................................................................................................................... 24 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................GGGGGAGGAGGAGGAGGAGGAA............................................................................................................................ 22 1 16 0.19 3 3 0 0 0 0 0 0 0 0 0 0
.................................................................................................AGGCGGCGGAGGAGGAGGAGG.................................................................................................................................... 21 0 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................GTGGGGGAGGAGGAGGAGGAGGAA............................................................................................................................ 24 2 20 0.15 3 3 0 0 0 0 0 0 0 0 0 0
........................................................................................................GGAGGAGGAGGAGGAGGAGG.............................................................................................................................. 20 0 20 0.15 3 3 0 0 0 0 0 0 0 0 0 0
.....................................................................................................GGCGGAGGAGGAGGAGGAGGA................................................................................................................................ 21 0 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0
.....CGCATATCAGCAACG...................................................................................................................................................................................................................................... 15 1 9 0.11 1 0 0 0 0 0 1 0 0 0 0 0
......................................................................................GGAGGAGGAAGAGGCGGCCGA............................................................................................................................................... 21 2 11 0.09 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................GCGGAGGAGGAGGAGGAGGA................................................................................................................................ 20 0 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................GGAGGAGGAGGAGGAGGAGGAA............................................................................................................................ 22 0 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................GAGGAGGAGGAGGAGGAGGAA............................................................................................................................ 21 0 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................CGGCGGAGGTGGAGGAGGAGGAGGAG............................................................................................................................ 26 2 18 0.06 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................AGGAGGAGGAAGAGGCGGCTTA............................................................................................................................................... 22 3 19 0.05 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AGGAGGAGGAGGAGGAAG........................................................................................................................... 18 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................GAGGAGGAGGAGGAGGAG............................................................................................................................... 18 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................CGGAGGAGGAGGAGGAGGA................................................................................................................................ 19 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................CGGAGGAGGAGGAGGA................................................................................................................................... 16 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

TACAGGCGCATAGTCGTTGCGGACGGTAGTTTACGTCGTAGGTAAGTGTCCACTCACGGTTTCAACCGTTGTTAGGTATGTANCCTCCTCCTCCTCCTCCGCCGCCTCCTCCTCCTCCTCCTCCTTCCTCGTAGGATTACGTTCCGTCGTTAGTTTGCGTTGGTAAAGGTGCGCCATTTAAAGGCGTCGTTTCGAGTAAAGGACAGACGACAGAAAAGGTCGGATAAGCGTTGATCAAAAGGTGAGTGGA
**************************************************((((((((((....)))))....(((.......)))......(((((.((..(((...((........((((..........))))..(((......))).))...)))..)).)))))..((((.......)))).......)))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total O002
Head
 M023
head
 O001
Testis
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
.....................................................................................................................................................................................................AAAGGACAGACGACAGAAAAGGTCG............................ 25 0 1 1.00 1 1 0 0 0 0
.........................................................................................................................................................................................GTCGTTTCGAGTAAAGGACA............................................. 20 0 1 1.00 1 0 1 0 0 0
..........................................................................................CTCCTCCTCCGCCGCCTC.............................................................................................................................................. 18 0 3 0.67 2 2 0 0 0 0
...............................................................................................CCTCCGCCGCCTCCTCCTC........................................................................................................................................ 19 0 4 0.50 2 0 0 2 0 0
............................................................................................................................................................................................................AGACGACAGAAAAGG............................... 15 0 2 0.50 1 0 0 0 1 0
...............................................................................................CCTCCGCCGCCTCCTCCTCCTCC.................................................................................................................................... 23 0 4 0.50 2 2 0 0 0 0
................TTGCAGACTGTAGTTTGCGT...................................................................................................................................................................................................................... 20 3 8 0.25 2 0 0 0 0 2
..........TAGTCGTTGCTGACG................................................................................................................................................................................................................................. 15 1 20 0.05 1 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:11980376-11980625 - dsi_13962 ATGTCCGCGTATC-AGCAACGCCTGCCATCAAATGCAGCATCCA-----------------TTCACAGGTGAGTG--CCAAAGTTGGC------------------------------------------------------AACAA--------------------------------------T--------------CCATAC----------------A--TNGGAG--------------------------------------------GAG---GAGGAGGAGGCGGCG--------------------GAGGA-GGAGGAGGAGGA----------------------------GGAAGGAGCATCCTAATGCAAGGC------------------AGCAATCAAACGCAACCATT-TCC---ACGCGGTAAATTTCCGCAGCAAAGCTCATTTCCTGT----------CTG-------------CTGTCTTTTCCAGCCTATTCGCA------------AC-----TAGTTTTCCACTCACCT-----
droSec2 scaffold_21:378733-379021 - dse_1052 ATGTCCGCGTATC-AGCAACGCCTGCCATCAAATGCAGCATCCA-----------------TTCACAGGTGAGTG--CCAAAGTTGGC------------------------------------------------------AACAAGAA-------------------------ATG--------------TGGGCAAAGGGGAGGAGGGGGTA-G--GA-----------AGAGGA-----------GAA---GGAG-------------------AAGGAGGAGGAGGAGGAG--------------------GAGGA-GGAGGAGGAGGAGGAAGGGA--------------------GGAAGGAGCATCCTAATGCAAGGC------------------AGCAATCAAACGCAACCATT-TCC---ACGCGGTAAATTTCCGCAGCAAAGCTCATTTCCTGT----------CTG-------------CTGTCTTTTCCAGCCTATTCGCA------------AC-----TAGTTTTCCACTCACCT-----
dm3 chrX:12624788-12625016 - ATGTCCGCGTATC-AGCAACGCCTGCCATCAAATGCAGCATCCA-----------------TTCACAGGTGAGTG--GCAAAGTTGGC------------------------------------------------------AACAAGAA------------------------------------------------------------------------A-------TG---AAAGGCAA--------------------------------------------AGGGG------------G--GAGGAGGA-----------------------------------------------GGAAGGAGCATCCTAATGCAAGGC------------------AGCAATCAAACGCAACCATT-TCC---ACGCGGTAAATTTCCGCAGCAAAGCTCATTTCCTGT----------CTG-------------CTGTCTTTTGCAGCCTATTCGCA------------AC-----TAGTTTTCCACTCACCT-----
droEre2 scaffold_4690:14226651-14226825 + ATGTCCGCGTATC-AGCAACGCCTGCCATCAAATGCAGCATCCA-----------------TTCACAGGTGAGTT--GCAAAGTTGGC------------------------------------------------------TAGAAGAA---------------------------G--------------TGGGCCAATAG----------------------------------------------------------------------------------------G------------A--GGGGGGGA---------------GGGC----------------------------ATACCGAGCATCCTAATGCTG-----------------------CGGTAA-TGACGGTAA-----T---G-ACGGTGAATTTCCGCAGCAAAGCTCATTTCCTGT----------C-------------------------------------------------------------------------------
droYak3 X:6905974-6906277 - ATGTCCGCGTATC-AGCAACGCCTGCCATCAAATGCAGCATCCA-----------------TTCACAGGTGAGTGTGACAAAGTTGGC------------------------------------------------------CACAAAAA-------------------------AAC--------------TGGGCCAAAGGGT-----GGGTC-G--GA-------------------------------AAGGGGG-------------------GGGGGGTGGGTGTAAGGG--------------GGG---GAGGG-GGAGTTGG---AGGA-------------A-----------AGAAGAAGCATCCTAATGCAA----------CGGCAGGCAGCGGCAATCAAACGCAACCATT-TCCTCAACGCGGTAAATTTCCGCCGCAAAGCTCATTTCCTGT----------CTG-------------CTGTCTTTTGCAGCCTATTGGCAGCCAGTTTTCCACTTTCCCCACTTTTCCACTCACCT-----
droEug1 scf7180000409110:1021548-1021782 - ATGTCCGCGTATC-AACAACGCCTGCCATCAAATGCAGCTCCTA-----------------TTCACAGGTGAGTT--G---------------TTTTTTGTTAT----------TGCTATTTGTAAATATAGTTAACTTAACTTTAAA---------------------------------------------------GAA-----GA--AAA-A------A-------AG---AAGAAA---ATGAG-------------------------------------------------------A--GGAAAGAAGGAAA-A----------------------------A------A----CGAACGCGCCTCCT-------------------------------AATCAAACTTAACCATT-TCC---ACCCAGTGAATTTCCGCCGCAAAGCTCATTTCCTGT----------CTG-------------CTGTCTTTGGCAGCCTTTT---------------------------------------------
droBia1 scf7180000298389:211671-211824 - AGGCTA---------A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--AAAAAGGA-----------------------------------------------AGAAAAAACATCCTAATACAAG-T------------------GGTAATCAAAGTTACCCATT-TCC---ACCCAGTAAATTTCCGCCGCAAAGCTCATTTCCTGT----------CTG-------------CTGTCTTTTCCAGCCTTTTC-CAGCCCGTTTCCCATT-----CAGTTTTCCACGCTTTC-----
droTak1 scf7180000415704:185076-185247 + TTATTCCCGGACCCAACGAACCCCG-------------TGTGCCTCCCCTGCAGATCCGTTTGCG-CGGTAAA-----------------------------------------AACCATGT--------------------G------------------------------------------------GTGGTCAAGA----------ACA-C------G--CGAAAGG---AGAGGAAGA--------------AGGGTGCGAATCAGGAGG------------------------T--------------------------TAG---CTTA-------------G-----------ATGAAAGGCAGCT-----------------------------------TAAGCGCAGCTA-----C---A-GCGATCAGCCGCCGCAGCA---------------------------------------------------------------------------------------------------------
droEle1 scf7180000491023:317158-317377 - ATGTCCGCGTATC-AGCAACGCCTGCCATCAAATGCACCTTCGC-----------------TTCACAGGTGAGTT--T----GTTGTG-----------------------AACAACTTTGT--------------------G---------------------------------------------------GGAAAATG-----GG--AAAA-CATTTTA-------TT---AAAAAA---AAAAG-------------------------------------------------------A----------------------------G----------------------------AAAAAG---------AGACAAG-A------------------AGTAATCAAACACAACCATTTTCC---ACCCAGTAAATTTCCGCCGCAAAGCTCATTTCCTGT----------GTG-------------CTTGCT---CCAT-----TC-CA------------TT-----CAGTTTTCCTCG--CTG-----
droRho1 scf7180000779985:43304-43560 + ATGTCCGCTTATC-AGCAACGCCTGCCATCAAATGCAGCATCGC-----------------TTCACAGGTGAGTT--A---------------ATGTTTAATAGACGTATGTACAACTTGGT--------------------G---------------------------------------------------GGGAAAAA-----GG--ACA-A------A-------TG---AAAAAA---AAAAG-------------------------------------------------------AGGAAGAAA---AAAA-A----------------------------A------G----TGGACAAGCGACCTAATACAA----------------------GTAATCAAACATACCCATT-TCC---ACCCAGCAAATTTCCGCCGCAAAGCTCATTTCCTGTGTTCTTGCTGCTG-------------CTGTCTTTTCCAGCCCATTC-CA------------TT-----CAGTTTTCC-------------
droFic1 scf7180000454050:533908-534162 - ATGTCCGCGTATC-AGCAACGCCTGCCATCAAATCCAGCATCGC-----------------TTCACAGGTGAGTT-----AACTTAAC------------------------------------------------------TAACAA-------------------------------------TTTTAAGTGGGCAAAAAA-----------------------------AAAGAA-----------AAAATAGTAG-------------------GTAAATACGAGTGAGAAA--------------------AAAA----------------------------------------------AGTGCGCCCTGAAACAA----------------------GTAATCAAACATACCCATT-TCC---ACCCAGCAAATTTCCGCCGCAAAGCTCATTTCCTGT----------CTGCCGGCTTGTGAAGCTGTCTTTTCCAGCCTTTTTCCA------------CT-----GCATTTTCCTCT----------
droKik1 scf7180000302621:77683-77856 + ATGTCCGCGTATC-AGCAACGCCTGCCACCAGGTGCACCATCGA-----------------TTCACAGGTGAGTG--TCCAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTAATTCAAGTAATTTAAGAT-ACCGCA-AAT-----CGGCAA------ATCGCA-TTTTCCCAC-----------ACAAACACACATACACATA-CAC---CCCAAACAAATTTCCGCCGCTAAGCTCATTTCCTGT------------------------------------------------------------------------------------------
droAna3 scaffold_12916:4203595-4203770 - CAGTCCGGGCAAC-GGCAGCGGCCCGGGTCCGGTGG---------------------------CAGGGACGGGAA--ACCCAGCCGGC------------------------------------------------------G--------------------------------------CTGCT--------------GCTGGAGCCGGAG--------------------------------------------------------------GGA---GTGGAAATGGAGGCG--------------------GGGCA-GGAGTCGTGGCA-----------------GCAGC--CGT-----AGCCGGAGCCGG----AGGC------------------AGCAACTACATGTTGCCATG-TCC---GCTGTGCGAAACCCCGC-------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396529:225065-225275 - AGC-CGCCGCAGC-AGCAC-AACTACCAACAG---CAGCAGACG-----------------C----AAATGAAC----CA----TA--------------------------------------------------------G-------CTACAACGCCACTC---AGCAGCAACAGCCGTCAGC--------------G--------------------------------------------------------------------------GGT---GAGAAGCCAGCAGCT--------------------GCTCA-GGCGGC---------------TGGGGCT-GCAGC--GGC-----AGGCGATGCCAA-------C------------------AGCAACATGATGCACCTGCCTTCCACCGCGCATCAGC---------------------------------------------------------A---CCAC-----CT-CA------------GC-----CAGACCCACCAC--CTGGCTGC
dp5 2:77552-77733 - TCGCCCACGCCAC-AACAACAATTGC----------AGCAGC-----------------------------------------------------------------------------------------------------------------------------AACAGCAGCAGCCGCCACT--------------GATAAAGAAGGGAAA-G--AT-----------GGAGCC-----------CATATCCGGC-------------------ATAGAGCCGATGGAGACG--------------------GATGA-GCCGCCGCTGAATGAAGCGAT--------------------CTCG--------GAAAGCGTGGC------------------TGCGGTCATA-GCCACCA----T--------CGCAGAAGCCAGCAGCAAGGC-----------------------------------------------------------------------------------------------------
droPer2 scaffold_7:2869334-2869515 - TCGCCCACGCCAC-AACAACAATTGC----------AGCAGC-----------------------------------------------------------------------------------------------------------------------------AACAGCAGCAGCCGCCACT--------------GATAAAGAAGGGAAA-G--AT-----------GGAGCC-----------CATATCCGGC-------------------ATAGAGCCGATGGAGACG--------------------GATGA-GCCGCCGCTGAATGAAGCGAT--------------------CTCG--------GAAAGCGTGGC------------------TGCGGTCATA-GCCACCA----T--------CGCAGAAGCCAGCAGCAAGGC-----------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004943:9271877-9272113 - ATTATAGTTGA-----CGATATGTTCCTAAGCCTGGAGAATGCT-----------------TTCAGTGATGATTTTGAGAAGATCAAA-----------------CGCATAGCCAATGAGGT--------------------G-------CAACAGTTCTGCACAGCGACACCGACAGTCCCTGTC--------------GGTGGAGGAGGCGGT-G--GT-----------GGA------------------------------------------------GGTGGTGGAGGAG--------------------GAGGA-GGAGTAGG------------------------------------AGACTATGCCAATGCCAA-TGATGCCAAT----------GCAAT-AATGATGCAAATA-TCA---ACGAGTCCAGCTTTAGCAGTA---------------------------------------------------------------------------------------------------------
droVir3 scaffold_12928:6859302-6859464 - GCAGCA---------GCAGCAGCCGCCACTACA----GTA----------------CGTT--------GTGCGTG--GC--AATTGGC------------------------------------------------------AGCAA---------------------------------------------------------------------------ATCTGCGAGG---AGCAGCAGC--------------ATCAGCTGCAACAGGAGG------------------------AGCT---G-CAAG---AAGA------------GC-----------------------T----GCATCAAGGGCAGCAACA-----------------------------CGAGCAGCAGCAGTC-ACC---GCAGGAGCAGCTTCAGCAGCAA--------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6540:1725218-1725404 + ATTGCAGCT-GTC-TGCAACGT----CATCAAAGGCAACGTCGT-----------------CA-ACAA-------------CAT---CAGCAACTTGTTGAGAG----------AGCGATTTG-------------------------------------------------------------------------------------------------------------------------------CTGTACAAC-------------------GAGTAATAGACGTAGTCGGAGAAGCG---G-AGTA---------G------AAAGT----------------------------AGTGGTAGCAATAGTATAAATGAC------------------CATAACCAAAAACAAACAGC-ACC---A-GCAGTCAATTGCCAGTGCAA--------------------------------------------------------------------------------------------------------
droGri2 scaffold_15081:1053788-1053934 + GCACCA---------ACAACGGCTA--AACAAGCGCAAAAACAA------------------TAACAGCTGAGCG--AGAGGGGGGGC------------------------------------------------------A-------------------------------------------------------------------------CAACAAATTGGGGGGA---GGAGGAGGC--------------GACGGA-------------------GGCGACGGAAGCG--------------------GAGCA-GG---------ATGA-------------G------TATTAGGTAAAGACAACGTAACG------------------------------CAGACGTAAC-----------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ATGTCCGCGTATC-AGCAACGCCTGCCATCAAATGCAGCATCCA-----------------TTCACAGGTGAGTG--CCAAAGTTGGC------------------------------------------------------AACAA--------------------------------------T--------------CCATAC----------------A--TNGGAG--------------------------------------------GAG---GAGGAGGAGGCGGCG--------------------GAGGA-GGAGGAGGAGGA----------------------------GGAAGGAGCATCCTAATGCAAGGC------------------AGCAATCAAACGCAACCATT-TCC---ACGCGGTAAATTTCCGCAGCAAAGCTCATTTCCTGT----------CTG-------------CTGTCTTTTCCAGCCTATTCGCA------------AC-----TAGTTTTCCACTCACCT-----SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................................................................................................................................................................................................................................GAGGAGGCGGCG--------------------GAGGA-GGAGGAGGAG.................................................................................................................................................................................................................................27116.0016100000000000015000
...............................................................................................................................................................................................................................................................................................GAGGCGGCG--------------------GAGGA-GGAGGAGGAGGA----------------------------A..................................................................................................................................................................................................2719.00900000000000018000
...................................................................................................................................................................................................................................................................................GAG---GAGGAGGAGGCGGCG--------------------GAGGA-GGAG.......................................................................................................................................................................................................................................2713.00300030000000000000
.........................................................................................................................................................................................................................................................................................GAGGAGGAGGCGGCG--------------------GAGGA-GGAGGAG....................................................................................................................................................................................................................................2712.00200010000000001000
...............................................................................................................................................................................................................................................................................................GAGGCGGCG--------------------GAGGA-GGAGGAGGAGG................................................................................................................................................................................................................................2512.00211000000000000000
..........................................................................................................................................................................................................................................................................................AGGAGGAGGCGGCG--------------------GAGGA-GGAGGAG....................................................................................................................................................................................................................................2612.00200000000000002000
.............................................................................................................................................................................................................................................................................................AGGAGGCGGCG--------------------GAGGA-GGAGGAGGAG.................................................................................................................................................................................................................................2612.00200020000000000000
...................................................................................................................................................................................................................................................................................................CGGCG--------------------GAGGA-GGAGGAGGAGGA----------------------------...................................................................................................................................................................................................2231.33400000000000004000
.....................................................................................................................................................................................................................................................................................G---GAGGAGGAGGCGGCG--------------------GAGGA-GGA........................................................................................................................................................................................................................................2411.00100010000000000000
...................................................................................................................................................................................................................................................................................................................................GAGGAGGAGGA----------------------------GGAAGGAGCAT........................................................................................................................................................................................2211.00100000000000001000
.....................................................................................................................................................................................................................................................................................................................................GGAGGAGGA----------------------------GGAAGGAGCA.........................................................................................................................................................................................1911.00100000000000001000
....................................................................................................................................................................................................................................................................................................................................AGGAGGAGGA----------------------------GGAAGGAGCA.........................................................................................................................................................................................2011.00100000000000001000
................................................................................................................................................................................................................................................................................................AGGCGGCG--------------------GAGGA-GGAGGAGGAGGA----------------------------...................................................................................................................................................................................................2511.00110000000000000000
.......................................................................................................................................................................................................................................................................................................G--------------------GAGGA-GGAGGAGGAGGA----------------------------GGAAGGAG...........................................................................................................................................................................................2611.00100000000001000000
......................................................................................................................................................................................................................................G--------------------------------------------GAG---GAGGAGGAGGCGGCG--------------------GAGGA-...........................................................................................................................................................................................................................................2411.00100010000000000000
....................................................................................................................................................................................................................................................................................AG---GAGGAGGAGGCGGCG--------------------GAGGA-GGAG.......................................................................................................................................................................................................................................2611.00100000000000010000
................................................................................................................................................................................................................................................................................................AGGCGGCG--------------------GAGGA-GGAGGAGGAGGA----------------------------G..................................................................................................................................................................................................2611.00100010000000000000
..................................................................................................................................................................................................................................................................................................GCGGCG--------------------GAGGA-GGAGGAGGAGGA----------------------------G..................................................................................................................................................................................................2411.00110000000000000000
..............................AAATGCAGCATCCA-----------------TTCACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000100000
..................................................................................................................................................................................................................................................................................................GCGGCG--------------------GAGGA-GGAGGAGGAGGA----------------------------GGAAG..............................................................................................................................................................................................2811.00100010000000000000
...............................................................................................................................................................................................................................................................................................GAGGCGGCG--------------------GAGGA-GGAGGAGGAGGA----------------------------G..................................................................................................................................................................................................2711.00100100000000000000
...............................................................................................................................................................................................................................................................................................GAGGCGGCG--------------------GAGGA-GGAGGAGGAGGA----------------------------GGA................................................................................................................................................................................................2911.00100010000000000000
..........................................................................................................................................................................................................................................................................................AGGAGGAGGCGGCG--------------------GAGGA-GGA........................................................................................................................................................................................................................................2211.00100000000000001000
..............................................................................................................................................................................................................................................................................................GGAGGCGGCG--------------------GAGGA-GGAGGAGGA..................................................................................................................................................................................................................................2411.00100010000000000000
............................................................................................................................................................................................................................................................................................GAGGAGGCGGCG--------------------GAGGA-GGAGGAGGAGGA----------------------------...................................................................................................................................................................................................2911.00100000000000010000
.................................................................................................................................................................................................................................................................................................GGCGGCG--------------------GAGGA-GGAGGAGGA..................................................................................................................................................................................................................................2160.67400000400000000000
.........................................................................................................................................................................................................................................................................................GAGGAGGAGGCGGCG--------------------GAGG.............................................................................................................................................................................................................................................1920.50100001000000000000
...............................................................................................................................................................................................................................................................................................GAGGCGGCG--------------------GAGGA-GGAG.......................................................................................................................................................................................................................................1840.50200000200000000000
...............................................................................................................................................................................................................................................................................................GAGGCGGCG--------------------GAGGA-GGAGGA.....................................................................................................................................................................................................................................2040.50200000200000000000
...............................................................................................................................................................................................................................................................................................GAGGCGGCG--------------------GAGGA-GGAGGAGG...................................................................................................................................................................................................................................2240.50200000200000000000
...................................................................................................................................................................................................................................GGAG--------------------------------------------GAG---GAGGAGGAGGCGGC......................................................................................................................................................................................................................................................................2120.50100010000000000000
............................................................................................................................................................................................................................................................................................GAGGAGGCGGCG--------------------GAGGA-GGAGGAG....................................................................................................................................................................................................................................2420.50100000000000001000
..................................................................................................................................................................................................................................................................................................GCGGCG--------------------GAGGA-GGAGGAGGAGGA----------------------------A..................................................................................................................................................................................................2420.50100000000000010000
............................................................................................................................................................................................................................................................................................GAGGAGGCGGCG--------------------GAGGA-GGAGGAGGG..................................................................................................................................................................................................................................2630.33100100000000000000
...................................................................................................................................................................................................................................................................................GAG---GAGGAGGAGGCGGCG--------------------G................................................................................................................................................................................................................................................1930.33100000000000001000
..............................................................................................................................................................................................................................................................................................GGAGGCGGCG--------------------GAGGA-GGAGGAGG...................................................................................................................................................................................................................................2340.25110000000000000000
................................................................................................................................................................................................................................................................................................AGGCGGCG--------------------GAGGA-GGAGGAGG...................................................................................................................................................................................................................................2160.17110000000000000000
.......................................................................................................................................................................................................................................................................................................G--------------------GAGGA-GGAGGAGGAGGA----------------------------GG.................................................................................................................................................................................................20200.15300000000000003000
....................................................................................................................................................................................................................................................................................................GGCG--------------------GAGGA-GGAGGAGGAGGA----------------------------...................................................................................................................................................................................................2170.14100000000000001000
.....................................................................................................................................................................................................................................................................................................GCG--------------------GAGGA-GGAGGAGGAGGA----------------------------...................................................................................................................................................................................................20120.08100000000000001000
.......................................................................................................................................................................................................................................................................................................G--------------------GAGGA-GGAGGAGGAGGA----------------------------GGAA...............................................................................................................................................................................................22120.08100000000000001000
............................................................................................................................................................................................................................................................................................................................GAGGA-GGAGGAGGAGGA----------------------------GGAA...............................................................................................................................................................................................21150.07100000000000001000
................................................................................................................................................................................................................................................................................................................................A-GGAGGAGGAGGA----------------------------GGAAG..............................................................................................................................................................................................18200.05100000000000001000
............................................................................................................................................................................................................................................................................................................................GAGGA-GGAGGAGGAGGA----------------------------G..................................................................................................................................................................................................18200.05110000000000000000
......................................................................................................................................................................................................................................................................................................CG--------------------GAGGA-GGAGGAGGAGGA----------------------------...................................................................................................................................................................................................19200.05100000000000001000
......................................................................................................................................................................................................................................................................................................CG--------------------GAGGA-GGAGGAGGA..................................................................................................................................................................................................................................16200.05100000000010000000
droSec2
ATGTCCGCGTATC-AGCAACGCCTGCCATCAAATGCAGCATCCA-----------------TTCACAGGTGAGTG--CCAAAGTTGGC------------------------------------------------------AACAAGAA-------------------------ATG--------------TGGGCAAAGGGGAGGAGGGGGTA-G--GA-----------AGAGGA-----------GAA---GGAG-------------------AAGGAGGAGGAGGAGGAG--------------------GAGGA-GGAGGAGGAGGAGGAAGGGA--------------------GGAAGGAGCATCCTAATGCAAGGC------------------AGCAATCAAACGCAACCATT-TCC---ACGCGGTAAATTTCCGCAGCAAAGCTCATTTCCTGT----------CTG-------------CTGTCTTTTCCAGCCTATTCGCA------------AC-----TAGTTTTCCACTCACCT-----SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..................................................................................................................................................................................................................................................................................................GAGGAG--------------------GAGGA-GGAGGAGGAGGAGGAA...........................................................................................................................................................................................................................2714.0040400
................................................................................................................................................................................................................................................................................................................................A-GGAGGAGGAGGAGGAAGG.........................................................................................................................................................................................................................1911.0010001
...........TC-AGCAACGCCTGCCATCAAATGCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000
..........................................................................................................................................................................................................................................................AA---GGAG-------------------AAGGAGGAGGAGGA.........................................................................................................................................................................................................................................................................2020.5010100
.......................................................................................................................................................................................................................................................................................AGGAGGAGGAGGAGGAG--------------------GAGGA-GGAG.......................................................................................................................................................................................................................................26200.2550401
......................................................................................................................................................................................................................................................................................AAGGAGGAGGAGGAGGAG--------------------GAGGA-GG.........................................................................................................................................................................................................................................2540.2510001
.........................................................................................................................................................................................................................................................................................GAGGAGGAGGAGGAG--------------------GAGGA-GGA........................................................................................................................................................................................................................................23200.2555000
.....................................................................................................................................................................................................................................................................................................GAG--------------------GAGGA-GGAGGAGGAGGAGGAAG..........................................................................................................................................................................................................................2540.2510001
..............................................................................................................................................................................................................................................................................................GGAGGAGGAG--------------------GAGGA-GGAGGAGGA..................................................................................................................................................................................................................................24200.2042200
.....................................................................................................................................................................................................................................................................................................GAG--------------------GAGGA-GGAGGAGGAGGAGGAA...........................................................................................................................................................................................................................2460.1710010
...............................................................................................................................................................................................................................................................................................GAGGAGGAG--------------------GAGGA-GGAGGAGGA..................................................................................................................................................................................................................................23200.1530003
..................................................................................................................................................................................................................................................................................................GAGGAG--------------------GAGGA-GGAGGAGGAGGA...............................................................................................................................................................................................................................23200.1530003
.....................................................................................................................................................................................................................................................................................................GAG--------------------GAGGA-GGAGGAGGAGGAGGA............................................................................................................................................................................................................................23200.1530003
............................................................................................................................................................................................................................................................................................GAGGAGGAGGAG--------------------GAGGA-GGAGGA.....................................................................................................................................................................................................................................23200.1530003
...............................................................................................................................................................................................................................................................GGAG-------------------AAGGAGGAGGAGGAGG.......................................................................................................................................................................................................................................................................2080.1310010
..............................................................................................................................................................................................................................................................................................GGAGGAGGAG--------------------GAGGA-GGAGGAGGAG.................................................................................................................................................................................................................................25200.1021100
...........................................................................................................................................................................................................................................................................................GGAGGAGGAGGAG--------------------GAGGA-GGAGGA.....................................................................................................................................................................................................................................24200.1022000
........................................................................................................................................................................................................................................................................................GGAGGAGGAGGAGGAG--------------------GAGGA-GGA........................................................................................................................................................................................................................................24200.1022000
........................................................................................................................................................................................................................................................................................GGAGGAGGAGGAGGAG--------------------GAGGA-GGAG.......................................................................................................................................................................................................................................25200.1021100
...........................................................................................................................................................................................................................................................................................GGAGGAGGAGGAG--------------------GAGGA-GGAGGAG....................................................................................................................................................................................................................................25200.1021100
.................................................................................................................................................................................................................................................................................................GGAGGAG--------------------GAGGA-GGAGGAGGAGGA...............................................................................................................................................................................................................................24200.1022000
.................................................................................................................................................................................................................................................................................................GGAGGAG--------------------GAGGA-GGAGGAGGAGGAG..............................................................................................................................................................................................................................25200.1021100
....................................................................................................................................................................................................................................................................................................GGAG--------------------GAGGA-GGAGGAGGAGGAGGA............................................................................................................................................................................................................................24200.1022000
...............................................................................................................................................................................................................................................................GGAG-------------------AAGGAGGAGGAGGA.........................................................................................................................................................................................................................................................................18130.0810100
...............................................................................................................................................................................................................................................................................................................................GA-GGAGGAGGAGGAGGAAG..........................................................................................................................................................................................................................19140.0711000
................................................................................................................................................................................................................................................................................................AGGAGGAG--------------------GAGGA-GGAGGAGGA..................................................................................................................................................................................................................................22200.0510010
........................................................................................................................................................................................................................................................................................GGAGGAGGAGGAGGAG--------------------GAGGA-...........................................................................................................................................................................................................................................21200.0510100
.............................................................................................................................................................................................................................................................................................AGGAGGAGGAG--------------------GAGGA-GGAGGA.....................................................................................................................................................................................................................................22200.0510010
..................................................................................................................................................................................................................................................................................................GAGGAG--------------------GAGGA-GGAGGAGGAGGAG..............................................................................................................................................................................................................................24200.0511000
..................................................................................................................................................................................................................................................................................................GAGGAG--------------------GAGGA-GGAGGAGGAGGAGGA............................................................................................................................................................................................................................26200.0510001
...............................................................................................................................................................................................................................................................................................GAGGAGGAG--------------------GAGGA-GGAGGAGGAGGA...............................................................................................................................................................................................................................26200.0511000
..........................................................................................................................................................................................................................................................................................AGGAGGAGGAGGAG--------------------GAGGA-GGAGGAG....................................................................................................................................................................................................................................26200.0510001
......................................................................................................................................................................................................................................................................................................AG--------------------GAGGA-GGAGGAGGAGGAGGA............................................................................................................................................................................................................................22200.0510010
..........................................................................................................................................................................................................................................................................................AGGAGGAGGAGGAG--------------------GAGGA-GGA........................................................................................................................................................................................................................................22200.0510010
.........................................................................................................................................................................................................................................................................................GAGGAGGAGGAGGAG--------------------GAGGA-GGAGGA.....................................................................................................................................................................................................................................26200.0511000
..................................................................................................................................................................................................................................................................G-------------------AAGGAGGAGGAGGAGGA......................................................................................................................................................................................................................................................................18200.0511000
.......................................................................................................................................................................................................................................................................................AGGAGGAGGAGGAGGAG--------------------GAGGA-GGA........................................................................................................................................................................................................................................25200.0510100
............................................................................................................................................................................................................................................................................................GAGGAGGAGGAG--------------------GAGGA-GGAGGAGGA..................................................................................................................................................................................................................................26200.0511000
...............................................................................................................................................................................................................................................................................................GAGGAGGAG--------------------GAGGA-GGAGGAGGAG.................................................................................................................................................................................................................................24200.0511000
............................................................................................................................................................................................................................................................................................GAGGAGGAGGAG--------------------GAGGA-GGAGGAG....................................................................................................................................................................................................................................24200.0511000
...................................................................................................................................................................................................................................................................................................AGGAG--------------------GAGGA-GGAGGAGGAGGA...............................................................................................................................................................................................................................22200.0510010
.............................................................................................................................................................................................................................................................................................AGGAGGAGGAG--------------------GAGGA-GGAGGAGGAG.................................................................................................................................................................................................................................26200.0510001
................................................................................................................................................................................................................................................................................................AGGAGGAG--------------------GAGGA-GGAGGAGGAGGAG..............................................................................................................................................................................................................................26200.0510001
.........................................................................................................................................................................................................................................................................................GAGGAGGAGGAGGAG--------------------GAGGA-GGAG.......................................................................................................................................................................................................................................24200.0511000
..................................................................................................................................................................................................................................................................................................GAGGAG--------------------GAGGA-GGAGGAGGAGGAGG.............................................................................................................................................................................................................................25200.0511000
dm3
ATGTCCGCGTATC-AGCAACGCCTGCCATCAAATGCAGCATCCA-----------------TTCACAGGTGAGTG--GCAAAGTTGGC------------------------------------------------------AACAAGAA------------------------------------------------------------------------A-------TG---AAAGGCAA--------------------------------------------AGGGG------------G--GAGGAGGA-----------------------------------------------GGAAGGAGCATCCTAATGCAAGGC------------------AGCAATCAAACGCAACCATT-TCC---ACGCGGTAAATTTCCGCAGCAAAGCTCATTTCCTGT----------CTG-------------CTGTCTTTTGCAGCCTATTCGCA------------AC-----TAGTTTTCCACTCACCT-----SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................TGCCATCAAATGCAGCATCCA-----------------TTCACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2715.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TGTCCGCGTATC-AGCAACGCCTGCCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................CCATCAAATGCAGCATCCA-----------------TTCACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000
...............GCAACGCCTGCCATCAAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................CTGCCATCAAATGCAGCATCCA-----------------TT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
ATGTCCGCGTATC-AGCAACGCCTGCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........TC-AGCAACGCCTGCCATCAAATGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........ATC-AGCAACGCCTGCCATCAAATGCAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................TGCCATCAAATGCAGCATCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................TCAAATGCAGCATCCA-----------------TTCACAGGTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................GCCTGCCATCAAATGCAGCATC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................G--GAGGAGGA-----------------------------------------------GGAAGGAGC..........................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................TCAAATGCAGCATCCA-----------------TTCACAGGTCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..GTCCGCGTATC-AGCAACGCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................AGAA------------------------------------------------------------------------A-------TG---AAAGGCAA--------------------------------------------AGGGG------------.............................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
ATGTCCGCGTATC-AGCAACGCCTGCCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................TGCCATCAAATGCAGCATCCA-----------------TTCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................AAGAA------------------------------------------------------------------------A-------TG---AAAGGCAA--------------------------------------------AGGG..........................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
..................................................................................................................................................................................................................................................A--------------------------------------------AGGGG------------G--GAGGAGGA-----------------------------------------------GGAAGG.............................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................AAATGCAGCATCCA-----------------TTCACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................TCAAATGCAGCATCCA-----------------TTCACAGGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................CAAATGCAGCATCCA-----------------TTCACAGGTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TGTCCGCGTATC-AGCAACGCCTGCCAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................GAGGA-----------------------------------------------GGAAGGAGCATCCTAATG.................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
ATGTCCGCGTATC-AGCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................CCTGCCATCAAATGCAGCATCCA-----------------TT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................AAAGGCAA--------------------------------------------AGGGG------------G--GAGA......................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
...............................AATGCAGCATCCA-----------------TTCACAGGTCTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................CACAGGTGAGTG--GCAAAGTTGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCTGT----------CTG-------------CTGTCTTTTGC.....................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..GTCCGCGTATC-AGCAACGCCTGCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................CAAATGCAGCATCCA-----------------TTCACAGGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................GGA-----------------------------------------------GGAAGGAGCATCCTAATG.................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...TCCGCGTATC-AGCAACGCCTGCCATC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............GCAACGCCTGCCATCAAATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................TGCAAGGC------------------AGCAATCAAACGCA...........................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................AAAGGCAA--------------------------------------------AGGGG------------G--GAGGAGGA-----------------------------------------------GGAA...............................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
...............................................................CACAGGTGAGTG--GCAAAGTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...........TC-AGCAACGCCTGCCATCAAATGCAGCAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................TGCCATCAAATGCAGCATCCA-----------------TTCAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................TGCAAGGC------------------AGCAATCAAAC..............................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................A--------------------------------------------AGGGG------------G--GAGGAGGA-----------------------------------------------GGA................................................................................................................................................................................................1830.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000100000
droEre2
ATGTCCGCGTATC-AGCAACGCCTGCCATCAAATGCAGCATCCA-----------------TTCACAGGTGAGTT--GCAAAGTTGGC------------------------------------------------------TAGAAGAA---------------------------G--------------TGGGCCAATAG----------------------------------------------------------------------------------------G------------A--GGGGGGGA---------------GGGC----------------------------ATACCGAGCATCCTAATGCTG-----------------------CGGTAA-TGACGGTAA-----T---G-ACGGTGAATTTCCGCAGCAAAGCTCATTTCCTGT----------C-------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGCAGCAAAGCTCATTTCCT............................................................................................2311.0010100000
...TCCGCGTATC-AGCAACGCCTGCCATC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000100
.................................TGCAGCATCCA-----------------TTCACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
...TCCGCGTATC-AGCAACGCCTGCCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
droYak3
ATGTCCGCGTATC-AGCAACGCCTGCCATCAAATGCAGCATCCA-----------------TTCACAGGTGAGTGTGACAAAGTTGGC------------------------------------------------------CACAAAAA-------------------------AAC--------------TGGGCCAAAGGGT-----GGGTC-G--GA-------------------------------AAGGGGG-------------------GGGGGGTGGGTGTAAGGG--------------GGG---GAGGG-GGAGTTGG---AGGA-------------A-----------AGAAGAAGCATCCTAATGCAA----------CGGCAGGCAGCGGCAATCAAACGCAACCATT-TCCTCAACGCGGTAAATTTCCGCCGCAAAGCTCATTTCCTGT----------CTG-------------CTGTCTTTTGCAGCCTATTGGCAGCCAGTTTTCCACTTTCCCCACTTTTCCACTCACCT-----SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................ATGCAGCATCCA-----------------TTCACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010000000
............................................................................................................................................................................................................................................................AAGGGGG-------------------GGGGGGTGGG.............................................................................................................................................................................................................................................................................1720.50100000100000
droEug1
ATGTCCGCGTATC-AACAACGCCTGCCATCAAATGCAGCTCCTA-----------------TTCACAGGTGAGTT--G---------------TTTTTTGTTAT----------TGCTATTTGTAAATATAGTTAACTTAACTTTAAA---------------------------------------------------GAA-----GA--AAA-A------A-------AG---AAGAAA---ATGAG-------------------------------------------------------A--GGAAAGAAGGAAA-A----------------------------A------A----CGAACGCGCCTCCT-------------------------------AATCAAACTTAACCATT-TCC---ACCCAGTGAATTTCCGCCGCAAAGCTCATTTCCTGT----------CTG-------------CTGTCTTTGGCAGCCTTTT---------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
AGGCTA---------A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--AAAAAGGA-----------------------------------------------AGAAAAAACATCCTAATACAAG-T------------------GGTAATCAAAGTTACCCATT-TCC---ACCCAGTAAATTTCCGCCGCAAAGCTCATTTCCTGT----------CTG-------------CTGTCTTTTCCAGCCTTTTC-CAGCCCGTTTCCCATT-----CAGTTTTCCACGCTTTC-----SizeHit CountTotal NormTotal
No Reads
droTak1
TTATTCCCGGACCCAACGAACCCCG-------------TGTGCCTCCCCTGCAGATCCGTTTGCG-CGGTAAA-----------------------------------------AACCATGT--------------------G------------------------------------------------GTGGTCAAGA----------ACA-C------G--CGAAAGG---AGAGGAAGA--------------AGGGTGCGAATCAGGAGG------------------------T--------------------------TAG---CTTA-------------G-----------ATGAAAGGCAGCT-----------------------------------TAAGCGCAGCTA-----C---A-GCGATCAGCCGCCGCAGCA---------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
ATGTCCGCGTATC-AGCAACGCCTGCCATCAAATGCACCTTCGC-----------------TTCACAGGTGAGTT--T----GTTGTG-----------------------AACAACTTTGT--------------------G---------------------------------------------------GGAAAATG-----GG--AAAA-CATTTTA-------TT---AAAAAA---AAAAG-------------------------------------------------------A----------------------------G----------------------------AAAAAG---------AGACAAG-A------------------AGTAATCAAACACAACCATTTTCC---ACCCAGTAAATTTCCGCCGCAAAGCTCATTTCCTGT----------GTG-------------CTTGCT---CCAT-----TC-CA------------TT-----CAGTTTTCCTCG--CTG-----SizeHit CountTotal NormTotal
No Reads
droRho1
ATGTCCGCTTATC-AGCAACGCCTGCCATCAAATGCAGCATCGC-----------------TTCACAGGTGAGTT--A---------------ATGTTTAATAGACGTATGTACAACTTGGT--------------------G---------------------------------------------------GGGAAAAA-----GG--ACA-A------A-------TG---AAAAAA---AAAAG-------------------------------------------------------AGGAAGAAA---AAAA-A----------------------------A------G----TGGACAAGCGACCTAATACAA----------------------GTAATCAAACATACCCATT-TCC---ACCCAGCAAATTTCCGCCGCAAAGCTCATTTCCTGTGTTCTTGCTGCTG-------------CTGTCTTTTCCAGCCCATTC-CA------------TT-----CAGTTTTCC-------------SizeHit CountTotal NormTotal
No Reads
droFic1
ATGTCCGCGTATC-AGCAACGCCTGCCATCAAATCCAGCATCGC-----------------TTCACAGGTGAGTT-----AACTTAAC------------------------------------------------------TAACAA-------------------------------------TTTTAAGTGGGCAAAAAA-----------------------------AAAGAA-----------AAAATAGTAG-------------------GTAAATACGAGTGAGAAA--------------------AAAA----------------------------------------------AGTGCGCCCTGAAACAA----------------------GTAATCAAACATACCCATT-TCC---ACCCAGCAAATTTCCGCCGCAAAGCTCATTTCCTGT----------CTGCCGGCTTGTGAAGCTGTCTTTTCCAGCCTTTTTCCA------------CT-----GCATTTTCCTCT----------SizeHit CountTotal NormTotal
No Reads
droKik1
ATGTCCGCGTATC-AGCAACGCCTGCCACCAGGTGCACCATCGA-----------------TTCACAGGTGAGTG--TCCAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTAATTCAAGTAATTTAAGAT-ACCGCA-AAT-----CGGCAA------ATCGCA-TTTTCCCAC-----------ACAAACACACATACACATA-CAC---CCCAAACAAATTTCCGCCGCTAAGCTCATTTCCTGT------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
CAGTCCGGGCAAC-GGCAGCGGCCCGGGTCCGGTGG---------------------------CAGGGACGGGAA--ACCCAGCCGGC------------------------------------------------------G--------------------------------------CTGCT--------------GCTGGAGCCGGAG--------------------------------------------------------------GGA---GTGGAAATGGAGGCG--------------------GGGCA-GGAGTCGTGGCA-----------------GCAGC--CGT-----AGCCGGAGCCGG----AGGC------------------AGCAACTACATGTTGCCATG-TCC---GCTGTGCGAAACCCCGC-------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
AGC-CGCCGCAGC-AGCAC-AACTACCAACAG---CAGCAGACG-----------------C----AAATGAAC----CA----TA--------------------------------------------------------G-------CTACAACGCCACTC---AGCAGCAACAGCCGTCAGC--------------G--------------------------------------------------------------------------GGT---GAGAAGCCAGCAGCT--------------------GCTCA-GGCGGC---------------TGGGGCT-GCAGC--GGC-----AGGCGATGCCAA-------C------------------AGCAACATGATGCACCTGCCTTCCACCGCGCATCAGC---------------------------------------------------------A---CCAC-----CT-CA------------GC-----CAGACCCACCAC--CTGGCTGCSizeHit CountTotal NormTotal
No Reads
dp5
TCGCCCACGCCAC-AACAACAATTGC----------AGCAGC-----------------------------------------------------------------------------------------------------------------------------AACAGCAGCAGCCGCCACT--------------GATAAAGAAGGGAAA-G--AT-----------GGAGCC-----------CATATCCGGC-------------------ATAGAGCCGATGGAGACG--------------------GATGA-GCCGCCGCTGAATGAAGCGAT--------------------CTCG--------GAAAGCGTGGC------------------TGCGGTCATA-GCCACCA----T--------CGCAGAAGCCAGCAGCAAGGC-----------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................................................................................................................................................................................................................................................................................TAGAGCCGATGGAGACG--------------------GATGA-...........................................................................................................................................................................................................................................2211.0010000000100
..................................................................................................................................................................................CCGCCACT--------------GATAAAGAAGGG.........................................................................................................................................................................................................................................................................................................................................................2011.0010000001000
........................................GC-----------------------------------------------------------------------------------------------------------------------------AACAGCAGCAGCCGCCACT--------------GATA.................................................................................................................................................................................................................................................................................................................................................................2511.0010010000000
........................................................................................................................................................................................................GATAAAGAAGGGAAA-G--AT-----------GGA..................................................................................................................................................................................................................................................................................................................................2111.0010010000000
..................ACAATTGC----------AGCAGC-----------------------------------------------------------------------------------------------------------------------------AACAGCAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................2511.0010000100000
.......................................................................................................................................................................AACAGCAGCAGCCGCCACT--------------C....................................................................................................................................................................................................................................................................................................................................................................2050.2010100000000
droPer2
TCGCCCACGCCAC-AACAACAATTGC----------AGCAGC-----------------------------------------------------------------------------------------------------------------------------AACAGCAGCAGCCGCCACT--------------GATAAAGAAGGGAAA-G--AT-----------GGAGCC-----------CATATCCGGC-------------------ATAGAGCCGATGGAGACG--------------------GATGA-GCCGCCGCTGAATGAAGCGAT--------------------CTCG--------GAAAGCGTGGC------------------TGCGGTCATA-GCCACCA----T--------CGCAGAAGCCAGCAGCAAGGC-----------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................................GCAGC-----------------------------------------------------------------------------------------------------------------------------AACAGCAGCAGCCGCC......................................................................................................................................................................................................................................................................................................................................................................................2130.331001000
droWil2
ATTATAGTTGA-----CGATATGTTCCTAAGCCTGGAGAATGCT-----------------TTCAGTGATGATTTTGAGAAGATCAAA-----------------CGCATAGCCAATGAGGT--------------------G-------CAACAGTTCTGCACAGCGACACCGACAGTCCCTGTC--------------GGTGGAGGAGGCGGT-G--GT-----------GGA------------------------------------------------GGTGGTGGAGGAG--------------------GAGGA-GGAGTAGG------------------------------------AGACTATGCCAATGCCAA-TGATGCCAAT----------GCAAT-AATGATGCAAATA-TCA---ACGAGTCCAGCTTTAGCAGTA---------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........................................................................................................................................................................................................GTGGAGGAGGCGGT-G--GT-----------GGA------------------------------------------------..................................................................................................................................................................................................................................................................................2040.75301110
........................................................................................................................................................................................................GGTGGAGGAGGCGGT-G--GT-----------GGA------------------------------------------------..................................................................................................................................................................................................................................................................................2130.33101000
................................................................................................................................................................................................................AGGCGGT-G--GT-----------GGA------------------------------------------------GGTGGTGG..........................................................................................................................................................................................................................................................................2140.25101000
.........................................................................................................................................................................................................GTGGAGGAGGCGGT-G--GT-----------GGA------------------------------------------------G.................................................................................................................................................................................................................................................................................2140.25101000
....................................................................................................................................................................................................................GGT-G--GT-----------GGA------------------------------------------------GGTGGTGGA.........................................................................................................................................................................................................................................................................1860.17100001
........................................................................................................................................................................................................................................GGA------------------------------------------------GGTGGTGGAGGAG--------------------GA...............................................................................................................................................................................................................................................1870.14100100
...........................................................................................................................................................................................................................................................................................GGTGGTGGAGGAG--------------------GAGGA-GGAG.......................................................................................................................................................................................................................................22120.08100100
............................................................................................................................................................................................................................................................................................GTGGTGGAGGAG--------------------GAGGA-GGA........................................................................................................................................................................................................................................20170.06100100
...........................................................................................................................................................................................................................................................................................GGTGGTGGAGGAG--------------------GAGGA-GG.........................................................................................................................................................................................................................................20180.06100001
...........................................................................................................................................................................................................................................................................................GGTGGTGGAGGAG--------------------GAGGA-G..........................................................................................................................................................................................................................................19200.05100100
....................................................................................................................................................................................................................................................................................................GGAG--------------------GAGGA-GGAGTAGG------------------------------------A..............................................................................................................................................................................................18200.05101000
..................................................................................................................................................................................................................................................................................................GAGGAG--------------------GAGGA-GGAGTAG....................................................................................................................................................................................................................................18200.05101000
droVir3
GCAGCA---------GCAGCAGCCGCCACTACA----GTA----------------CGTT--------GTGCGTG--GC--AATTGGC------------------------------------------------------AGCAA---------------------------------------------------------------------------ATCTGCGAGG---AGCAGCAGC--------------ATCAGCTGCAACAGGAGG------------------------AGCT---G-CAAG---AAGA------------GC-----------------------T----GCATCAAGGGCAGCAACA-----------------------------CGAGCAGCAGCAGTC-ACC---GCAGGAGCAGCTTCAGCAGCAA--------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................................................................................GGC------------------------------------------------------AGCAA---------------------------------------------------------------------------ATCTGCGAGG---AG................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000001000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................AAG---AAGA------------GC-----------------------T----GCATCAAGGGCAGCA....................................................................................................................................................................................2511.001000000000100000000000000000000000000000000000000000000000000000
.........................................................................TG--GC--AATTGGC------------------------------------------------------AGCAA---------------------------------------------------------------------------ATCTGCGAGG---..................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000010000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................CAACAGGAGG------------------------AGCT---G-CAAG---AAGA------------GC-----------------------........................................................................................................................................................................................................2511.001000000000000000000000000000001000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTC-ACC---GCAGGAGCAGCT..................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
............................CTACA----GTA----------------CGTT--------GTGCGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000001000000000000000000000000000000000
droMoj3
ATTGCAGCT-GTC-TGCAACGT----CATCAAAGGCAACGTCGT-----------------CA-ACAA-------------CAT---CAGCAACTTGTTGAGAG----------AGCGATTTG-------------------------------------------------------------------------------------------------------------------------------CTGTACAAC-------------------GAGTAATAGACGTAGTCGGAGAAGCG---G-AGTA---------G------AAAGT----------------------------AGTGGTAGCAATAGTATAAATGAC------------------CATAACCAAAAACAAACAGC-ACC---A-GCAGTCAATTGCCAGTGCAA--------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..................................................................................................................AGCGATTTG-------------------------------------------------------------------------------------------------------------------------------CTGTACAAC-------------------GAGTAATAGA.............................................................................................................................................................................................................................................................................2811.001100000
..................................GCAACGTCGT-----------------CA-ACAA-------------CAT---C.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
..............................AAAGGCAACGTCGT-----------------CA-ACAA-------------CAT---CAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
droGri2
GCACCA---------ACAACGGCTA--AACAAGCGCAAAAACAA------------------TAACAGCTGAGCG--AGAGGGGGGGC------------------------------------------------------A-------------------------------------------------------------------------CAACAAATTGGGGGGA---GGAGGAGGC--------------GACGGA-------------------GGCGACGGAAGCG--------------------GAGCA-GG---------ATGA-------------G------TATTAGGTAAAGACAACGTAACG------------------------------CAGACGTAAC-----------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 03:40 PM