ID:

dsi_13926

Coordinate:

3l:7843163-7843312 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

intergenic

Repeatable elements

Name	Class	Family	Strand
AT_rich	Low_complexity	Low_complexity	+

Sense Strand Reads

GAGGTCTGTTTATAATGCGACACTTGAGCGGCGAACAAGAAGTTGAAGATTAACTTTAGCTGCAATGAAAAGAAGTATTTTCACAACAGCTAGCTGTGAAATGTAGTAAAGGAGAAAGAAGGCAGACTCTTCTTAGACTTTATACCATTTTATTGCATAAAATATTATAATATATAATCGATATTTTTCATATTTTCCAGGGCTGTCACAGATCCTCGCGATGGACGACGAGTGGCCTTGAAGAAGCTGC ************************************************......((((((...((((((......))))))...))))))((.((((((((..((((((....(((((((.....)))))))...))))))..)))))))).))..(((((((...(((((.......)))))....)))))))....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	GSM343915 embryo	M025 embryo	M023 head	M053 female body	SRR618934 dsim w501 ovaries	SRR902008 ovaries	SRR902009 testis	SRR553486 Makindu_3 day-old ovaries
..................GACACTTGAGCGGCGCAC......................................................................................................................................................................................................................	18	1	1	2.00	2	0	1	1	0	0	0	0	0
.................CGACACTTGAGCGGCGCAC......................................................................................................................................................................................................................	19	1	1	2.00	2	0	2	0	0	0	0	0	0
............................................................TGCAATGTAAAGAAGTATCTTG........................................................................................................................................................................	22	3	1	1.00	1	1	0	0	0	0	0	0	0
............................................................................................................................................................................................................................ATGGACGACGAGTGGCCT............	18	0	1	1.00	1	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................AGGGCTGTCACACATCATGGCG..............................	22	3	1	1.00	1	1	0	0	0	0	0	0	0
............................................................TGGAATGTAAAGAAGTATTTTG........................................................................................................................................................................	22	3	3	1.00	3	3	0	0	0	0	0	0	0
............................................................TGGAATGAAAAGAAGTATGTTG........................................................................................................................................................................	22	3	2	0.50	1	1	0	0	0	0	0	0	0
..............AGTCGACACTTGAGCGGCGCA.......................................................................................................................................................................................................................	21	3	2	0.50	1	0	0	0	1	0	0	0	0
....................CACTTGAGCGGCGCACAAC...................................................................................................................................................................................................................	19	2	2	0.50	1	0	0	1	0	0	0	0	0
.................CGACACTTGAGCGGCGCACAACT..................................................................................................................................................................................................................	23	3	2	0.50	1	0	1	0	0	0	0	0	0
...................ACACTTGAGCGGCGCACA.....................................................................................................................................................................................................................	18	1	2	0.50	1	0	0	1	0	0	0	0	0
............................................................TGTAATGTAAAGAAGTATT...........................................................................................................................................................................	19	2	2	0.50	1	0	0	0	1	0	0	0	0
............................................................TGGAATGTAAAGACGTATTTTC........................................................................................................................................................................	22	3	2	0.50	1	1	0	0	0	0	0	0	0
............................................................TGCAATGAAAAGAAGTATGTAG........................................................................................................................................................................	22	3	3	0.33	1	1	0	0	0	0	0	0	0
............................................................TGGAATGAAAAGAAGTATTTAG........................................................................................................................................................................	22	3	4	0.25	1	1	0	0	0	0	0	0	0
...........................................................................................................................AGACTCTTCTGAGAGTTT.............................................................................................................	18	2	5	0.20	1	0	0	0	0	1	0	0	0
............................................................TGGAATGAAAAGAAGTATTTCG........................................................................................................................................................................	22	3	5	0.20	1	1	0	0	0	0	0	0	0
......................................................................................................................................................................................ATTTTTCATATGTTCCACG.................................................	19	2	7	0.14	1	0	0	0	0	0	0	1	0
......................................................................................................................................................................................ATTTTTCATATGTTCCA...................................................	17	1	7	0.14	1	0	0	0	0	0	1	0	0
...................................................................................................AGTGAAGTAGAGGAGAAAGAA..................................................................................................................................	21	3	10	0.10	1	0	0	0	0	0	1	0	0
............................................................TGGAATGTATAGAAGTATTT..........................................................................................................................................................................	20	3	20	0.10	2	0	0	0	0	0	0	0	2
..............................................................................................TGTGATGTGTAGTAAGGGA.........................................................................................................................................	19	3	15	0.07	1	0	0	0	0	1	0	0	0
......................................................................................................................................................................................ATTTTTCATATGTTC.....................................................	15	1	20	0.05	1	0	0	0	0	0	0	1	0
......................................................................................................GTTGTAAAGGAGACATAAG.................................................................................................................................	19	3	20	0.05	1	0	0	0	0	1	0	0	0

Anti-sense strand reads

CTCCAGACAAATATTACGCTGTGAACTCGCCGCTTGTTCTTCAACTTCTAATTGAAATCGACGTTACTTTTCTTCATAAAAGTGTTGTCGATCGACACTTTACATCATTTCCTCTTTCTTCCGTCTGAGAAGAATCTGAAATATGGTAAAATAACGTATTTTATAATATTATATATTAGCTATAAAAAGTATAAAAGGTCCCGACAGTGTCTAGGAGCGCTACCTGCTGCTCACCGGAACTTCTTCGACG ************************************************......((((((...((((((......))))))...))))))((.((((((((..((((((....(((((((.....)))))))...))))))..)))))))).))..(((((((...(((((.......)))))....)))))))....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	GSM343915 embryo	M023 head	M024 male body	SRR553487 NRT_0-2 hours eggs
................................................................................AGTGTTTTCGATCGACACT.......................................................................................................................................................	19	1	1	1.00	1	1	0	0	0
..............................................................................................................................................................................................CTAAAAGGGCCCGGCAGTGT........................................	20	3	4	0.50	2	0	1	1	0
...........................................................................................................................................................................................................ACAGTGTCTAGGAGA................................	15	1	7	0.14	1	0	0	0	1

Generated: 04/24/2015 at 10:29 AM