ID:

dsi_13891

 Coordinate:

x:9361105-9361254 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [x_9361255_9361353_-]; five_prime_UTR [x_9361255_9361353_-]; intron [x_9360823_9361254_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TACCTTTAATGCGAGCACAACAAGTCAGTGGAGAGTCACTCTAATATTCCGTTGTTTCTTTTTTTTTTTTCTGTGATCTGAGTTCTTTGTGCCTTGTGATAATTTGTGTAGACTTTATGGCCTGGAACTGGAACTATAACTTATTTGATGTACACTTTTAATAATCAGAGATTCAGTTTAACCTTCGGGCTTCTCAGAATTCCATTTTGTTTGATTCTCTAATGATGTATTTATTGTATGTGGGAATACA
****************************************************************......((((((((((......((((........))))......))))..))))))...******************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M025
embryo
 M024
male body		 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
...............CACAACAAGTCAGTGGAGAGT...................................................................................................................................................................................................................... 21 0 1 22.00 22 21 1 0 0 0 0 0 0 0
...............CACAACAAGTCAGTGGAGAGTCAC................................................................................................................................................................................................................... 24 0 1 6.00 6 6 0 0 0 0 0 0 0 0
.....................................................................................................ATTTGTGTAGACTTTATGGCCT............................................................................................................................... 22 0 1 3.00 3 0 3 0 0 0 0 0 0 0
......................................................................................................TTTGTGTAGACTTTATGGCCT............................................................................................................................... 21 0 1 3.00 3 3 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................ATTCCATTTTGTTTGATTCTCTAATG.......................... 26 0 1 2.00 2 0 2 0 0 0 0 0 0 0
..............GCACAACAAGTCAGTGGAG......................................................................................................................................................................................................................... 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0
.........................................................................................................GTGTAGACTTTATGGCCTGG............................................................................................................................. 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0
.....................................................................................................ATTTGTGTAGACTTTATGGCC................................................................................................................................ 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0
....................................CACTCTAATATTCCGTTGTTTCTT.............................................................................................................................................................................................. 24 0 1 2.00 2 0 2 0 0 0 0 0 0 0
...............CACAACAAGTCAGTGGAGAGG...................................................................................................................................................................................................................... 21 1 1 2.00 2 1 0 1 0 0 0 0 0 0
...............CACAACAAGTCAGTGGAG......................................................................................................................................................................................................................... 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0
................................................................TTTTTTCTGTGATCTGAGT....................................................................................................................................................................... 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0
..........................................................TTTTTTTTTTTTCTGTGATC............................................................................................................................................................................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0
....................................................................................CTTTGTGCCTTGTGATAATTTGTGTAGA.......................................................................................................................................... 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.....................................................................TCTGTGATCTGAGTTCTTTGT................................................................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..........GCGAGCACAACAAGTCAG.............................................................................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0
...............................................................................................................ACTTTATGGCCTGGAACTG........................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................................................GATCTGAGTTCTTTGTGCCT............................................................................................................................................................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0
TACCTTTAATGCGAGCACAACAAGTCAG.............................................................................................................................................................................................................................. 28 0 1 1.00 1 0 0 0 0 0 0 0 1 0
........................................................................................................TGTGTAGACTTTATGGCCT............................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.................................................................................................GATAATTTGTGTAGACTTTATGGCC................................................................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0
............GAGCACAACAAGTCAGTG............................................................................................................................................................................................................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
............GAGCACAACAAGTCAGTGGAGAG....................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.................CAACAAGTCAGTGGAGAGT...................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0
......................................................................................................TTTGTGTAGACTTTATGGCCC............................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...............CACAACAAGTCAGTGGAGAGTCACT.................................................................................................................................................................................................................. 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..................AACAAGTCAGTGGAGAGT...................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...............CACAACAAGTCAGTGGAGAGTCACTCT................................................................................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............GCACAACAAGTCAGTGGAGAGT...................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.ACCTTTAATGCGAGCACAACAACT................................................................................................................................................................................................................................. 24 1 1 1.00 1 0 0 0 0 0 1 0 0 0
...............CACAACAAGTCAGTGGAGAGTC..................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..........................................................................................................TGTAGACTTTATGGCCTGG............................................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TGTTTGATTCTCTAATGATGTATTTAT................ 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0
.........................................................................................................................CTGGAACTGGAACTATAACTT............................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1
...............CACAACAAGTCAGTGGGGAGCCACTCT................................................................................................................................................................................................................ 27 2 1 1.00 1 0 1 0 0 0 0 0 0 0
...........................................................................ATCTGAGTTCTTTGTGCCT............................................................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..........GCGAGCACAACAAGTCAGT............................................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0
......................................................................................................TTTCTGTAGACTTTATGGCCT............................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
................ACAACAAGTCAGTGGAGAGTCAC................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............GCACAACAAGTCAGTGGAGAGTCACT.................................................................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......TAATGCGAGCACAACAAGTCAGTG............................................................................................................................................................................................................................ 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.......................................................................................................TTGTGTAGACTTTATGGCCTGG............................................................................................................................. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................ATTCCATTTTGTTTGATTCT................................ 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0
..................AACAAGTCAGTGGAGAGTCACTCT................................................................................................................................................................................................................ 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0
................ACAACAAGTCAGTGGAGAGT...................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................TTTTTTCTGTGATCTGAGTTCT.................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...............CACAACAAGTCAGTGGAGAGCCACTCT................................................................................................................................................................................................................ 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................TGTTTTTTCGGTGATCTGAGCT...................................................................................................................................................................... 22 3 3 0.33 1 0 0 0 0 0 0 1 0 0
................................................................TTAAGTCTGTGATCTGAGTTC..................................................................................................................................................................... 21 3 3 0.33 1 0 0 0 0 0 0 0 1 0
.......................................................................................................................................ATAACTGATTTGATCTACCC............................................................................................... 20 3 6 0.33 2 0 2 0 0 0 0 0 0 0
..................AACAAGTCAGTGAAGA........................................................................................................................................................................................................................ 16 1 4 0.25 1 0 0 0 0 0 1 0 0 0
.............................................................................................................................TACTGGAACTATGAATTATTT........................................................................................................ 21 3 10 0.20 2 0 0 0 0 0 0 2 0 0
......................................................................................................................GCCCTGGAACTGGAACT................................................................................................................... 17 1 6 0.17 1 0 0 0 0 1 0 0 0 0
..................................GTAGCTCTGATATTCCGTTG.................................................................................................................................................................................................... 20 3 7 0.14 1 0 0 0 0 0 1 0 0 0
..............................................................................................................................................................................AGCTTAACCTTCGGG............................................................. 15 1 10 0.10 1 0 0 0 0 0 1 0 0 0
..................................................................................................................TTATGGCCTGGGCCTGGA...................................................................................................................... 18 2 11 0.09 1 0 0 0 1 0 0 0 0 0
.............................................................................................................AGACTATATCGACTGGAAC.......................................................................................................................... 19 3 12 0.08 1 0 0 1 0 0 0 0 0 0
......................................................................CTGTGATCCGAGTTC..................................................................................................................................................................... 15 1 14 0.07 1 0 0 0 0 1 0 0 0 0
.........................................TACTGTACCGTTGTTTCTTT............................................................................................................................................................................................. 20 3 16 0.06 1 0 0 0 0 0 1 0 0 0
..........................................................................................................................................................CGTTTAGTAATCAGAGCTT............................................................................. 19 3 19 0.05 1 0 0 1 0 0 0 0 0 0
..........................................................................................................................TGAACCTGGATCTATAACT............................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0
.......................................................................................................................................................................................................................................TATTGCCTGTGGGAATA.. 17 2 20 0.05 1 0 0 0 0 1 0 0 0 0

Anti-sense strand reads

ATGGAAATTACGCTCGTGTTGTTCAGTCACCTCTCAGTGAGATTATAAGGCAACAAAGAAAAAAAAAAAAGACACTAGACTCAAGAAACACGGAACACTATTAAACACATCTGAAATACCGGACCTTGACCTTGATATTGAATAAACTACATGTGAAAATTATTAGTCTCTAAGTCAAATTGGAAGCCCGAAGAGTCTTAAGGTAAAACAAACTAAGAGATTACTACATAAATAACATACACCCTTATGT
*******************************************************************************************************************************......((((((((((......((((........))))......))))..))))))...**************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body		 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
................................CTCAGTGAGATTATAAGGCAA..................................................................................................................................................................................................... 21 0 1 5.00 5 5 0 0 0 0 0 0 0 0
.............................................................................GACTCAAGAAACACGGAAC.......................................................................................................................................................... 19 0 1 2.00 2 0 0 2 0 0 0 0 0 0
..........................................................................CTAGACTCAAGAAACACGGAAC.......................................................................................................................................................... 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0
..............................CTCTCAGTGAGATTATAAGGC....................................................................................................................................................................................................... 21 0 1 2.00 2 1 1 0 0 0 0 0 0 0
.........................................................................ACTAGACTCAAGAAACACGGA............................................................................................................................................................ 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................AAGAGATTACTACATA.................... 16 0 1 1.00 1 0 0 0 0 0 0 1 0 0
....................................................................................................................................................................AGGCTCTAAGTCAAATTGGAA................................................................. 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0
..............................CTCTCAGAGAGATTATAAGGC....................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................TTATTAGTCTCTAAGTCAA........................................................................ 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0
............CTCGTGTTGTTCAGTCACCTC......................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................AAAAAAAAAAAGGGACTAGACTCG....................................................................................................................................................................... 24 3 1 1.00 1 0 0 0 1 0 0 0 0 0
...............................TCTCAGTGAGATTATAAGGCA...................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................CTCTCAGGGAGATTATAAGGC....................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................AAGGCAACAAAGACAAAAAAA....................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 1 0 0 0
.....................................................................AGACACTAGACTCAAGAAACA................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................AAAAAAAAGGGACTAGACTCG....................................................................................................................................................................... 21 3 8 0.50 4 0 0 0 4 0 0 0 0 0
.............................................................AAAAAAAAAAACACTAGACACA....................................................................................................................................................................... 22 2 5 0.40 2 0 0 0 0 0 0 0 2 0
.............................................................AAAAAAAAAGGGACTAGACTCG....................................................................................................................................................................... 22 3 4 0.25 1 0 0 0 1 0 0 0 0 0
...............................................................AAAAAAAGGGACTAGACTCG....................................................................................................................................................................... 20 3 13 0.15 2 0 0 0 2 0 0 0 0 0
................................................................AAAAAAAACACTAGACT......................................................................................................................................................................... 17 1 8 0.13 1 0 0 0 0 1 0 0 0 0
................................................................................................................................................................................................GAGTCTTAAGGTGAA........................................... 15 1 16 0.06 1 0 0 0 0 1 0 0 0 0
...............................................................AAAAAAAAACACTAGACACA....................................................................................................................................................................... 20 2 16 0.06 1 0 0 0 0 0 0 0 1 0
...........................................................................................................................................................................................TCGAAGAGTCTTAAG................................................ 15 1 16 0.06 1 0 0 0 0 0 0 0 1 0
...........................................................AAAAAAAAAAAGACA................................................................................................................................................................................ 15 0 20 0.05 1 0 0 0 0 0 0 0 0 1
..........................................................AAAAAAAAAAACAACACTAGA........................................................................................................................................................................... 21 2 20 0.05 1 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:9361055-9361304 - dsi_13891 TACCTTTAATGCGAGCACAACA--AGTCAGTGGAGAGTCAC-T---------------------------------------------------------CTAATATTCCGT---TGTTTC----TTTT---------------T-------TTTTTTTCTGTGATCT-------GAGTTCT---TTGTGCCT--TGTGATAATTTGTG-TAGACTTTATGGCCTGGA------ACTGGAACTATAACTTATTTGATGTA-CACTTTT-----------------------------AATAATCAGAGATTCAGTTTAACCTTCGGGCTTCTCAGA---------------ATTCCATTTTGTTTGAT------------------------------------------------------------------------TCTCTAATGATGTATTTATTGTATG-----TGGG-----A-ATACA----------------
droSec2 scaffold_15:589472-589723 - TACCTTTAATGCGAGCACAACA--AGTCAGTGGAGAGTCAC-T---------------------------------------------------------CTAATATTCCGT---TGTTTC-----------------------T-------TTTTTTTCTGTGATCT-------GAGTTCT---TTGTGCCT--TGTGATAATTTGTA-TAGACTTTATGGCCTGGAACTGGAACTGGAACTATAACTTCTTTGATGTA-CACTTTT-----------------------------AATAATCCGAGATTCAGTTTAACCTTCGGGCTTCTCAGA---------------ATTCCATTTTGTTTGAT------------------------------------------------------------------------TCTCTAATGATGTATTTATTGTATG-----TGGG-----A-ATACA----------------
dm3 chrX:9824737-9824963 - TACCTTTAATGCGAGCACAACA--AGTCAGTGGAGAGTCAT-T---------------------------------------------------------CTAATATTCCGT---TGGTTT-----------------------T-------TTTTTTTCTGTGATCT-------GAGTTCT---TTGCGCCG--TGTGATAATTTATA-TAGTTTTTATGGCCAGGA------ACTGGAACTATAACTTCTTTGATATA-CACGTAT-----------------------------AATAATC------------CGAGATTTGGGCTTCTTAGA---------------ATTCCATTTTGTTTGAT------------------------------------------------------------------------TCTCTAATGATGTATTTATTTTATA-----TGG-----------------------------
droEre2 scaffold_4690:5286547-5286775 + TACCTTTAATGCGAGCACAACA--AGTCAGTGGAG--TCAC-T---------------------------------------------------------CTAATATTCCTTCTCCGTTTT-A--TTTT---------------T-------GTTTTTTCTGTGATCT-------GAGATC-----TGTGTCT--GGTGATAATA-----TACTCTTTAAGGCCTGGA------ACTGGAACTATAACTTCTTTGACGTA-CATTTCC-------------------------------------------------TATCTTTGGGCTTCCCAGA----GTT---CTCAGAATCCATTTCGCTTGAT-------------------------------------------------------------------------CCCTAATGATG-----ATTATACA-----TGGG-----AGTATCA----------------
droYak3 X:18417452-18417712 - TACCTTTAATGCGAGCACAACA--AGTCAGTGGAG--TCAC-T---------------------------------------------------------CTAATATTACTT----GTTTTTTTTTTTGA-AATTTATTTTTTT-TTTTGTA-----TTTTGTGTTCTGAGATCTGTGCCTT---GT---------GTGTTACTGTGTG-TATTCTTTATGGCCTGGA------ACTGGAACTATAACTTCTTTGATTTA-CATTTTG-----------------------------CATAATCTGGGATTTAGTCTAAGCTTC--GCTTC--AGA---------------AATCCATT-TGTTTGAT------------------------------------------------------------------------TCTCTAATGATGTTTTTATTAAATA-----TGGA-----A-AAACA----------------
droEug1 scf7180000409032:37898-38106 + TACGTTTAATGCGAGCACATCA--AGTCAGTGGAG--TCGT-T---------------------------------------------------------CCAATATTCTGT----------------------------------------TTTTTTTCTGTGATTT-------GTGTTTT---TTGTGGC---T---------------ACTTTTTATGGCCTGGA------ACTGGAACTATAACATCTTTGATATA-CGTTTTT-----------------------------GATAATC---------------------GGCTTCTAAGA---------------ATCATAATTTGTT-------------------------------GATGGTTGTTAGATATATTTTTTATTTAATTTCAGTAC--------------------------------------TTA-----A-GTACA----------------
droBia1 scf7180000302187:1572247-1572480 + TACGTTCAGTGCGAGCACATCA--AGTGAGTGGAG--TCGACCGT-------------------------------------------------------CCAGTATTC-GT---------------------------------------ATTTTTTTCTGTGATCT-------GCGCCC----CAGTGCC---CGCGATAATA-------CTCTTTATGGCCCGAA------ACTGGAACTATAATCTCC-TGACATAATATTTCCTGATTTAATTTTTGTAGTACAG-------------------------CAAACCTTTA----TC--ACA---------------AATC-------------------------------------------------------------------------AGCACTAACAAGTTTCCAATTTTGGAACTATTAAATA-----TTAAAAATTA-ATACA----------------
droTak1 scf7180000415872:485153-485372 - TACGTTTAGTGCGAGCACAACA--AGTCAGTGGAG--TCTT-C----TCAATAT--C----------------------------------------ATCTCAATATTCCGT---------------------------------------ATTTTTTTCTGTGATCT-------GT------------GGC---TGTGATATTTTATTTTCATTTTGATGGCCCGAA------ACTGGAACTATAACCACTTTGATTTA-CATTTTT-----------------------------AATATT------------CTAACCTTTGGGTTTCTTGGA---------------ATTGTTTTATGT-----------------------------------------------------------------------------ACTTTAAAAATAA---TATTACAAA-----CGAG-----T-TTACA----------------
droEle1 scf7180000491013:722393-722634 - TACGTTTAATGCGAGCACAACA--AGTCAGTGGAG--CCAC-TTTTTTGTATAT--ATTT----------------------------------------TGTATAT--------------------------------------TTTTGTATTTTTTTCTGTGATCT-------GTGCTTTTTTGTGTGCC---TGTGATAATATTGTTACGAATTGTTAG-GTGGA------ACTGGAAATATAACTTATTTGCTAAA-CATTTTT-----------------------------AATTATTACCGATGCAATCTAAACTTTGGGCTTCTTCGCTTGTGTTTAT-----TTCTCACT---------------------------------------------------------------------------------------TTGTTGTTTT--------------CAGA-----A-TCACA----------------
droRho1 scf7180000780080:237442-237631 + TACGTTTAATGCGAGCACAACA--AGTCAGTGGAG--CCAT-T---------------------------------------------------------TGAATATTTCGT---------------------------------------ATTTTTTTCTGTGATCT-------GTGCCTTTTTTTGTGCC---TGTGATTATTTG-ATATTTTTTGATGGCCTGAA------ACTGGAACTATAACTT-TTTGATATA-CACTTTT-----------------------------AATAATCGCTGATTCGGTCTGAAATTTAGGCTTCTTAGA---------------ATT----------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000454073:2759449-2759728 - TACGTTTAATGCGAGCACAACA--AGTCAGTGGAG--TCAT-T---------------------------------------------------------TGAATATTCCAT---TTA-------TATATA-------------T-------TTTTTTGCTGTGATCT-------GTGTTTTT--TTGTGGC---TGTGATAATA-----ATTTTTTGATGGCCGGGA------ACTGGAACTATAATGTCTTTGATATA-CATTTTT-----------------------------AA------CTGATACCATCTAACCTTTGAGTTTCTTGGA---------------ATTGTATTTTGTTTGTTTTTGTTTCGTATGTCTTACGTTTTTTTAATGGTTGTTCAAT----------------TTTCGTTT-------------TTAATGTT-----TGTACAACTTCTCGG-----A-AAGCA----------------
droKik1 scf7180000302592:433193-433442 + TGCGTTTAATGCGAGCACAACAAAAGTCGGTGAAT--TTG---------AATTTGAATTTGGAATATTTTATAATTTCTGTCAATCTGTGTTTCCCCATCTTTATTTTCTGT---TGTT---------------------------------TTTGTTTCTGTGAAAT-----C-GCACTCA---ATGTTGTTGCTGTGACAATAT----CAATTTTGATGGCCTGGA------ACTGGAACTATAATTTCCAGTAT----------C--------------------AGTGGGCTTGAT----AGTGATACGATCTAAGCTTTGGGTTTCTTGGA---------------AATTTATTGTGGTT-----------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13047:275397-275527 + TTCGCTTAATGCGAGCACAACA--AGTCAGTGGTGAACCTC--------AATA-----------------------------------------------CTAATATTCATT---ATTGTC----CACAC-AT--------------------TCTATACTTGGTTTT-------GTATTT----TTGTTTC---TGTGAAAATTTCGAGCCACCTTTATGGCTCGAA------AC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396431:67105-67262 + TTCGCTTAATGCGAGCACAACA--AGTCAGTGGTGAACCTG-----------------------------------------------------------CACATATTCCTT---CCTTTC----CATAT-ATTCTATCCCAAG-TTTTATATTTTTTTCTGTGAA-----------------------------------CATTTAAAGCCACTTTTATTGCCCGAA------ACAGAC-CT-------------------------------------------------------------------------------------TTCTTAA---------------------------------------------------------------------------------------------------------------------------------------------------AGCAGTTTTTTTTATTGTTT
dp5 XL_group3a:1056190-1056236 - TACGTTTAACGCGAGCAC---A--AGTCGGTGAAG--CCAT-T---------------------------------------------------------TGAATAATTCAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_15:1836595-1836641 + TACGTTTAACGCGAGCAC---A--AGTCGGTGAAG--CCAT-T---------------------------------------------------------TGAATAATTCAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004909:3084025-3084054 + TACTCTTAATACGAGCACATCA--AGTTAGTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12970:8962417-8962460 + AACATTCAATGCGAGCACAACA--AGTTAGTAGTGAAACGA-T---------------------------------------------------------TTAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6473:16521980-16522026 - AACATTCGATGCGAACACATCA--AGTTAGTAGTGGAATGA-T---------------------------------------------------------TTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATA----------------
droGri2 scaffold_15203:11655342-11655383 + TACATTTAATGCGAGCACATCA--AGTTAGTAGTGAACCGA-T---------------------------------------------------------TT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TACCTTTAATGCGAGCACAACA--AGTCAGTGGAGAGTCAC-T---------------------------------------------------------CTAATATTCCGT---TGTTTC----TTTT---------------T-------TTTTTTTCTGTGATCT-------GAGTTCT---TTGTGCCT--TGTGATAATTTGTG-TAGACTTTATGGCCTGGA------ACTGGAACTATAACTTATTTGATGTA-CACTTTT-----------------------------AATAATCAGAGATTCAGTTTAACCTTCGGGCTTCTCAGA---------------ATTCCATTTTGTTTGAT------------------------------------------------------------------------TCTCTAATGATGTATTTATTGTATG-----TGGG-----A-ATACA----------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............CACAACA--AGTCAGTGGAGAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21122.0022210100000000000000
...............CACAACA--AGTCAGTGGAGAGTCAC-............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2416.00660000000000000000
..........................................................................................................................................................................................................ATTTGTG-TAGACTTTATGGCCT.....................................................................................................................................................................................................................................................................................2213.00300300000000000000
...........................................................................................................................................................................................................TTTGTG-TAGACTTTATGGCCT.....................................................................................................................................................................................................................................................................................2113.00330000000000000000
...............................................................................................................................................................................................................................................................................................................................................................ATTCCATTTTGTTTGAT------------------------------------------------------------------------TCTCTAATG.....................................................2612.00200200000000000000
..............GCACAACA--AGTCAGTGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00220000000000000000
..............................................................................................................................................................................................................GTG-TAGACTTTATGGCCTGG...................................................................................................................................................................................................................................................................................2012.00220000000000000000
..........................................................................................................................................................................................................ATTTGTG-TAGACTTTATGGCC......................................................................................................................................................................................................................................................................................2112.00220000000000000000
......................................CAC-T---------------------------------------------------------CTAATATTCCGT---TGTTTC----TT.......................................................................................................................................................................................................................................................................................................................................................................................2412.00200200000000000000
...............CACAACA--AGTCAGTGGAGAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00211000000000000000
...............CACAACA--AGTCAGTGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00220000000000000000
.........................................................................................................................................................TTTTTTCTGTGATCT-------GAGT...................................................................................................................................................................................................................................................................................................................................1912.00220000000000000000
.............................................................................................................................TTTT---------------T-------TTTTTTTCTGTGATC...............................................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
....................................................................................................................................................................................CT---TTGTGCCT--TGTGATAATTTGTG-TAGA................................................................................................................................................................................................................................................................................................2811.00100000000000100000
..............................................................................................................................................................TCTGTGATCT-------GAGTTCT---TTGT.........................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
..........GCGAGCACAACA--AGTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000000000100000
.....................................................................................................................................................................................................................ACTTTATGGCCTGGA------ACTG........................................................................................................................................................................................................................................................................1911.00110000000000000000
...................................................................................................................................................................GATCT-------GAGTTCT---TTGTGCCT--...................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
TACCTTTAATGCGAGCACAACA--AGTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100010000000000000
.............................................................................................................................................................................................................TGTG-TAGACTTTATGGCCT.....................................................................................................................................................................................................................................................................................1911.00100100000000000000
......................................................................................................................................................................................................GATAATTTGTG-TAGACTTTATGGCC......................................................................................................................................................................................................................................................................................2511.00100100000000000000
............GAGCACAACA--AGTCAGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
............GAGCACAACA--AGTCAGTGGAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000000000100000
.................CAACA--AGTCAGTGGAGAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000000000
...........................................................................................................................................................................................................TTTGTG-TAGACTTTATGGCCC.....................................................................................................................................................................................................................................................................................2111.00110000000000000000
...............CACAACA--AGTCAGTGGAGAGTCAC-T---------------------------------------------------------..................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000000000
..................AACA--AGTCAGTGGAGAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
...............CACAACA--AGTCAGTGGAGAGTCAC-T---------------------------------------------------------CT................................................................................................................................................................................................................................................................................................................................................................................................................2711.00110000000000000000
..............GCACAACA--AGTCAGTGGAGAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110000000000000000
...............CACAACA--AGTCAGTGGAGAGTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
...............................................................................................................................................................................................................TG-TAGACTTTATGGCCTGG...................................................................................................................................................................................................................................................................................1911.00100100000000000000
........................................................................................................................................................................................................................................................................................................................................................................TGTTTGAT------------------------------------------------------------------------TCTCTAATGATGTATTTAT...........................................2711.00100000000100000000
...............................................................................................................................................................................................................................CTGGA------ACTGGAACTATAACTT............................................................................................................................................................................................................................................................2111.00100000010000000000
....................................................................................................................................................................ATCT-------GAGTTCT---TTGTGCCT--...................................................................................................................................................................................................................................................................................................................1911.00110000000000000000
..........GCGAGCACAACA--AGTCAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000000001000000
................ACAACA--AGTCAGTGGAGAGTCAC-............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00110000000000000000
..............GCACAACA--AGTCAGTGGAGAGTCAC-T---------------------------------------------------------..................................................................................................................................................................................................................................................................................................................................................................................................................2611.00110000000000000000
......TAATGCGAGCACAACA--AGTCAGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000000100000
............................................................................................................................................................................................................TTGTG-TAGACTTTATGGCCTGG...................................................................................................................................................................................................................................................................................2211.00100100000000000000
...............................................................................................................................................................................................................................................................................................................................................................ATTCCATTTTGTTTGAT------------------------------------------------------------------------TCT...........................................................2011.00100000000000100000
..................AACA--AGTCAGTGGAGAGTCAC-T---------------------------------------------------------CT................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000001000000
................ACAACA--AGTCAGTGGAGAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000000000
.........................................................................................................................................................TTTTTTCTGTGATCT-------GAGTTCT---.............................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
droSec2
TACCTTTAATGCGAGCACAACA--AGTCAGTGGAGAGTCAC-T---------------------------------------------------------CTAATATTCCGT---TGTTTC-----------------------T-------TTTTTTTCTGTGATCT-------GAGTTCT---TTGTGCCT--TGTGATAATTTGTA-TAGACTTTATGGCCTGGAACTGGAACTGGAACTATAACTTCTTTGATGTA-CACTTTT-----------------------------AATAATCCGAGATTCAGTTTAACCTTCGGGCTTCTCAGA---------------ATTCCATTTTGTTTGAT------------------------------------------------------------------------TCTCTAATGATGTATTTATTGTATG-----TGGG-----A-ATACA----------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............CACAACA--AGTCAGTGGAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.0031002
............GAGCACAACA--AGTCAGTGGAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2313.0031200
...............................................................................................................................................................CTGTGATCT-------GAGTTCT---TTGTG........................................................................................................................................................................................................................................................................................................................2112.0022000
TACCTTTAATGCGAGCACAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
..................AACA--AGTCAGTGGAGAGTCAC-............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
.......AATGCGAGCACAACA--AGTCAGTGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100
TACCTTTAATGCGAGCACAACA--..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
........................AGTCAGTGGAGAGTCAC-T---------------------------------------------------------CTAA..............................................................................................................................................................................................................................................................................................................................................................................................................2211.0010001
..................AACA--AGTCAGTGGAGAGTCAC-T---------------------------------------------------------CTAA..............................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100
..................AACA--AGTCAGTGGAGAGTCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
.................CAACA--AGTCAGTGGAGAGTCAC-T---------------------------------------------------------..................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010001
.............AGCACAACA--AGTCAGTGGAGAGTCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010001
..........GCGAGCACAACA--AGTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010001
............GAGCACAACA--AGTCAGTGGAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
...............CACAACA--AGTCAGTGGAGAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
...............CACAACA--AGTCAGTGGAGAGTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010001
..................AACA--AGTCAGTGGAGAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
................ACAACA--AGTCAGTGGAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0011000
............GAGCACAACA--AGTCAGTGGAGAGTCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010001
..............GCACAACA--AGTCAGTGGAGAGTCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000
................ACAACA--AGTCAGTGGAGAGTCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010001
dm3
TACCTTTAATGCGAGCACAACA--AGTCAGTGGAGAGTCAT-T---------------------------------------------------------CTAATATTCCGT---TGGTTT-----------------------T-------TTTTTTTCTGTGATCT-------GAGTTCT---TTGCGCCG--TGTGATAATTTATA-TAGTTTTTATGGCCAGGA------ACTGGAACTATAACTTCTTTGATATA-CACGTAT-----------------------------AATAATC------------CGAGATTTGGGCTTCTTAGA---------------ATTCCATTTTGTTTGAT------------------------------------------------------------------------TCTCTAATGATGTATTTATTTTATA-----TGG-----------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........GCGAGCACAACA--AGTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1818.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000101000000200000000000000000000000000
..............GCACAACA--AGTCAGTGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1817.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000210000000000000000100000000000000000000000000
..........GCGAGCACAACA--AGTCAGTGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2215.0050000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000210000000000000000000000000
...................ACA--AGTCAGTGGAGAGTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1815.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000001000000000000100000000000
..........GCGAGCACAACA--AGTCAGTGGAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000100000000000
..............GCACAACA--AGTCAGTGGAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000002000000000000000000000000
............GAGCACAACA--AGTCAGTGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000001000000
...................ACA--AGTCAGTGGAGAGTCAT-T---------------------------------------------------------CTA...............................................................................................................................................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000001000000
.................CAACA--AGTCAGTGGAGAGTCAT-............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000001000000000000000000000000
................ACAACA--AGTCAGTGGAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000100000000000000000000000000
....TTTAATGCGAGCACAACA--..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..............GCACAACA--AGTCAGTGGAGAGTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............GAGCACAACA--AGTCAGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.ACCTTTAATGCGAGCACAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000
...............CACAACA--AGTCAGTGGAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.........................GTCAGTGGAGAGTCAT-T---------------------------------------------------------CT................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
..........GCGAGCACAACA--AGTCAGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
..CCTTTAATGCGAGCACAACA--AGTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
....TTTAATGCGAGCACAACA--AC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
............GAGCACAACA--AGTCAGTGGAGAGTCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TGCGAGCACAACA--AGTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
..............GCACAACA--AGTCAGTGGAGAGTCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...CTTTAATGCGAGCACAACA--AG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...CTTTAATGCGAGCACAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
..........GCGAGCACAACA--AGTCAGTGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.......................................................................................................................................................................................................................................................................CGTAT-----------------------------AATAATC------------CGAGATTTG.................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............GAGCACAACA--AGTCAGTGGAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.ACCTTTAATGCGAGCACAACA--AG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
........ATGCGAGCACAACA--AGTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...CTTTAATGCGAGCACAACA--..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..................AACA--AGTCAGTGGAGAGTCAT-T---------------------------------------------------------CTAA..............................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
...............CACAACA--AGTCAGTGGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................TCTTTGATATA-CACGTAT-----------------------------AAT..........................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........ATGCGAGCACAACA--AGTCAGTGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......AATGCGAGCACAACA--AGTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................AATAATC------------CGAGATTTGGGCT.............................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......TAATGCGAGCACAACA--AGTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..............GCACAACA--AGTCAGTGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...............CACAACA--AGTCAGTGGAGAGTCAT-T---------------------------------------------------------CTA...............................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...........CGAGCACAACA--AGTCAGTGGAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.................CAACA--AGTCAGTGGAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.....TTAATGCGAGCACAACA--AGTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................AACA--AGTCAGTGGAGAGTCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................CA--AGTCAGTGGAGAGTCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..................AACA--AGTCAGTGGAGAGTCAT-T---------------------------------------------------------CTATA.............................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.......................................AT-T---------------------------------------------------------CTAATATTCCGT---TGG................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
................................................................................................................................................................TGTGATCT-------GAGTTCT---TTGCGCCG--TG.................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
.......AATGCGAGCACAACA--AGTCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................AGTCAGTGGAGAGTCAT-T---------------------------------------------------------..................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000
...............CACAACA--AGTCAGTGGAGAGTCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..............GCACAACA--AGTCAGTGGAGAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..CCTTTAATGCGAGCACAACA--AG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
.....TTAATGCGAGCACAACA--AGTCAGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................ACA--AGTCAGTGGAGAGTCAT-T---------------------------------------------------------CT................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................CTTTGATATA-CACGTAT-----------------------------AATA.........................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................ACAACA--AGTCAGTGGAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.............AGCACAACA--AGTCAGTGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......AATGCGAGCACAACA--AGTCAGTGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..................AACA--AGTCAGTGGAGAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
......TAATGCGAGCACAACA--AGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................CTTCTTTGATATA-CACGTAT-----------------------------A............................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............AGCACAACA--AGTCAGTGGAGAGTCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.......AATGCGAGCACAACA--AGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
..............GCACAACA--AGTCAGTGGAGAGTCAT-............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..............GCACAACA--AGTCAGTGGAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............CACAACA--AGTCAGTGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
..................AACA--AGTCAGTGGAGAGTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.........................GTCAGTGGAGAGTCAT-T---------------------------------------------------------CTA...............................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...........CGAGCACAACA--AGTCAGTGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..........................TCAGTGGAGAGTCAT-T---------------------------------------------------------CTAATATTCCG.......................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................CAACA--AGTCAGTGGAGAGTCAT-T---------------------------------------------------------..................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
................................................................................................................................................................................................................................AGGA------ACTGGAACTATC................................................................................................................................................................................................................................................................1640.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......AATGCGAGCACAACA--AC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1750.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TACCTTTAATGCGAGCACAACA--AGTCAGTGGAG--TCAC-T---------------------------------------------------------CTAATATTCCTTCTCCGTTTT-A--TTTT---------------T-------GTTTTTTCTGTGATCT-------GAGATC-----TGTGTCT--GGTGATAATA-----TACTCTTTAAGGCCTGGA------ACTGGAACTATAACTTCTTTGACGTA-CATTTCC-------------------------------------------------TATCTTTGGGCTTCCCAGA----GTT---CTCAGAATCCATTTCGCTTGAT-------------------------------------------------------------------------CCCTAATGATG-----ATTATACA-----TGGG-----AGTATCA----------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.........TGCGAGCACAACA--AGTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
..............................................................................................................................................................................................................................................................GACGTA-CATTTCC-------------------------------------------------TATCTTTGGGC..............................................................................................................................................................................2411.0011000000
................ACAACA--AGTCAGTGGAG--TCAC-............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000
...............CACAACA--AGTCAGTGGAG--.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0011000000
......TAATGCGAGCACAACA--AG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
..............GCACAACA--AGTCAGTGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
...............................................................................................................................................................CTGTGATCT-------GAGATC-----TGTGTC......................................................................................................................................................................................................................................................................................................................2111.0011000000
......................................................................................................................................................................................................................................................................ATTTCC-------------------------------------------------TATCTTTGGGCTTCC..........................................................................................................................................................................2111.0010000010
........................................................................................................................................................................................................................................................................................................................................................................CGCTTGAT-------------------------------------------------------------------------CCCTAATGATG-----AT...........................................2111.0010000010
droYak3
TACCTTTAATGCGAGCACAACA--AGTCAGTGGAG--TCAC-T---------------------------------------------------------CTAATATTACTT----GTTTTTTTTTTTGA-AATTTATTTTTTT-TTTTGTA-----TTTTGTGTTCTGAGATCTGTGCCTT---GT---------GTGTTACTGTGTG-TATTCTTTATGGCCTGGA------ACTGGAACTATAACTTCTTTGATTTA-CATTTTG-----------------------------CATAATCTGGGATTTAGTCTAAGCTTC--GCTTC--AGA---------------AATCCATT-TGTTTGAT------------------------------------------------------------------------TCTCTAATGATGTTTTTATTAAATA-----TGGA-----A-AAACA----------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.............AGCACAACA--AGTCAGTGGAG--TCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
............GAGCACAACA--AGTCAGTGGAG--.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000
......................................................................................................................................................................CTGAGATCTGTGCCTT---GT---------GTGTT.............................................................................................................................................................................................................................................................................................................2311.00100100000000
.....................................................................................................................................................................TCTGAGATCTGTGCCTT---GT---------GTG...............................................................................................................................................................................................................................................................................................................2211.00100100000000
..........GCGAGCACAACA--AGTCAGTGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
..........GCGAGCACAACA--AGTCAGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010000000
...........................................................................................................................................................................................................................................................................................................TAATCTGGGATTTAGTCTAAG......................................................................................................................................................................................2111.00101000000000
........ATGCGAGCACAACA--AGTCAGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000
.................................................................................................................................................................................GCCTT---GT---------GTGTTACG..........................................................................................................................................................................................................................................................................................................15200.10200000000002
TACCTTTAATGCGAGCACAACA--ACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26140.07101000000000
TACCTTTAATGCGAGCACAACA--ACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25140.07101000000000
droEug1
TACGTTTAATGCGAGCACATCA--AGTCAGTGGAG--TCGT-T---------------------------------------------------------CCAATATTCTGT----------------------------------------TTTTTTTCTGTGATTT-------GTGTTTT---TTGTGGC---T---------------ACTTTTTATGGCCTGGA------ACTGGAACTATAACATCTTTGATATA-CGTTTTT-----------------------------GATAATC---------------------GGCTTCTAAGA---------------ATCATAATTTGTT-------------------------------GATGGTTGTTAGATATATTTTTTATTTAATTTCAGTAC--------------------------------------TTA-----A-GTACA----------------SizeHit CountTotal NormTotal
No Reads
droBia1
TACGTTCAGTGCGAGCACATCA--AGTGAGTGGAG--TCGACCGT-------------------------------------------------------CCAGTATTC-GT---------------------------------------ATTTTTTTCTGTGATCT-------GCGCCC----CAGTGCC---CGCGATAATA-------CTCTTTATGGCCCGAA------ACTGGAACTATAATCTCC-TGACATAATATTTCCTGATTTAATTTTTGTAGTACAG-------------------------CAAACCTTTA----TC--ACA---------------AATC-------------------------------------------------------------------------AGCACTAACAAGTTTCCAATTTTGGAACTATTAAATA-----TTAAAAATTA-ATACA----------------SizeHit CountTotal NormTotal
No Reads
droTak1
TACGTTTAGTGCGAGCACAACA--AGTCAGTGGAG--TCTT-C----TCAATAT--C----------------------------------------ATCTCAATATTCCGT---------------------------------------ATTTTTTTCTGTGATCT-------GT------------GGC---TGTGATATTTTATTTTCATTTTGATGGCCCGAA------ACTGGAACTATAACCACTTTGATTTA-CATTTTT-----------------------------AATATT------------CTAACCTTTGGGTTTCTTGGA---------------ATTGTTTTATGT-----------------------------------------------------------------------------ACTTTAAAAATAA---TATTACAAA-----CGAG-----T-TTACA----------------SizeHit CountTotal NormTotal
No Reads
droEle1
TACGTTTAATGCGAGCACAACA--AGTCAGTGGAG--CCAC-TTTTTTGTATAT--ATTT----------------------------------------TGTATAT--------------------------------------TTTTGTATTTTTTTCTGTGATCT-------GTGCTTTTTTGTGTGCC---TGTGATAATATTGTTACGAATTGTTAG-GTGGA------ACTGGAAATATAACTTATTTGCTAAA-CATTTTT-----------------------------AATTATTACCGATGCAATCTAAACTTTGGGCTTCTTCGCTTGTGTTTAT-----TTCTCACT---------------------------------------------------------------------------------------TTGTTGTTTT--------------CAGA-----A-TCACA----------------SizeHit CountTotal NormTotal
No Reads
droRho1
TACGTTTAATGCGAGCACAACA--AGTCAGTGGAG--CCAT-T---------------------------------------------------------TGAATATTTCGT---------------------------------------ATTTTTTTCTGTGATCT-------GTGCCTTTTTTTGTGCC---TGTGATTATTTG-ATATTTTTTGATGGCCTGAA------ACTGGAACTATAACTT-TTTGATATA-CACTTTT-----------------------------AATAATCGCTGATTCGGTCTGAAATTTAGGCTTCTTAGA---------------ATT----------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
TACGTTTAATGCGAGCACAACA--AGTCAGTGGAG--TCAT-T---------------------------------------------------------TGAATATTCCAT---TTA-------TATATA-------------T-------TTTTTTGCTGTGATCT-------GTGTTTTT--TTGTGGC---TGTGATAATA-----ATTTTTTGATGGCCGGGA------ACTGGAACTATAATGTCTTTGATATA-CATTTTT-----------------------------AA------CTGATACCATCTAACCTTTGAGTTTCTTGGA---------------ATTGTATTTTGTTTGTTTTTGTTTCGTATGTCTTACGTTTTTTTAATGGTTGTTCAAT----------------TTTCGTTT-------------TTAATGTT-----TGTACAACTTCTCGG-----A-AAGCA----------------SizeHit CountTotal NormTotal
No Reads
droKik1
TGCGTTTAATGCGAGCACAACAAAAGTCGGTGAAT--TTG---------AATTTGAATTTGGAATATTTTATAATTTCTGTCAATCTGTGTTTCCCCATCTTTATTTTCTGT---TGTT---------------------------------TTTGTTTCTGTGAAAT-----C-GCACTCA---ATGTTGTTGCTGTGACAATAT----CAATTTTGATGGCCTGGA------ACTGGAACTATAATTTCCAGTAT----------C--------------------AGTGGGCTTGAT----AGTGATACGATCTAAGCTTTGGGTTTCTTGGA---------------AATTTATTGTGGTT-----------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
TTCGCTTAATGCGAGCACAACA--AGTCAGTGGTGAACCTC--------AATA-----------------------------------------------CTAATATTCATT---ATTGTC----CACAC-AT--------------------TCTATACTTGGTTTT-------GTATTT----TTGTTTC---TGTGAAAATTTCGAGCCACCTTTATGGCTCGAA------AC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TTCGCTTAATGCGAGCACAACA--AGTCAGTGGTGAACCTG-----------------------------------------------------------CACATATTCCTT---CCTTTC----CATAT-ATTCTATCCCAAG-TTTTATATTTTTTTCTGTGAA-----------------------------------CATTTAAAGCCACTTTTATTGCCCGAA------ACAGAC-CT-------------------------------------------------------------------------------------TTCTTAA---------------------------------------------------------------------------------------------------------------------------------------------------AGCAGTTTTTTTTATTGTTTSizeHit CountTotal NormTotal
No Reads
dp5
TACGTTTAACGCGAGCAC---A--AGTCGGTGAAG--CCAT-T---------------------------------------------------------TGAATAATTCAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............GAGCAC---A--AGTCGGTGAAG--C................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.......AACGCGAGCAC---A--AGTCGGTGAAG--.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000001000
...GTTTAACGCGAGCAC---A--AGTCGGTGAAG--.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
........ACGCGAGCAC---A--AGTCGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010000
.......AACGCGAGCAC---A--AGTCGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010000
..............GCAC---A--AGTCGGTGAAG--CCAT-............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100000
..CGTTTAACGCGAGCAC---A--AGTCGGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
droPer2
TACGTTTAACGCGAGCAC---A--AGTCGGTGAAG--CCAT-T---------------------------------------------------------TGAATAATTCAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......AACGCGAGCAC---A--AGTCGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
droWil2
TACTCTTAATACGAGCACATCA--AGTTAGTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......AATACGAGCACATCA--AGTTAGTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2311.00100001
....CTTAATACGAGCACATCA--A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100
.......AATACGAGCACATCA--AGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
...TCTTAATACGAGCACATCA--A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
droVir3
AACATTCAATGCGAGCACAACA--AGTTAGTAGTGAAACGA-T---------------------------------------------------------TTAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
AACATTCAATGCGAGCACAACA--ACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000010000000000000000000000000000000000000000000000
.......AATGCGAGCACAACA--AGTTAGTAGTGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000100000000000000000000000000000000000000000000000
..............GCACAACA--AGTTAGTAGTGAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000010000000000000000000000000000000000000000000000000000000
................ACAACA--AGTTAGTAGTGAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000001000000000000000000000000000000000
droMoj3
AACATTCGATGCGAACACATCA--AGTTAGTAGTGGAATGA-T---------------------------------------------------------TTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATA----------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
TACATTTAATGCGAGCACATCA--AGTTAGTAGTGAACCGA-T---------------------------------------------------------TT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.ACATTTAATGCGAGCACATC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110
.ACATTTAATGCGAGCACATCA--..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110

Generated: 05/19/2015 at 01:17 AM