ID:

dsi_13884

 Coordinate:

2r:5430454-5430521 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [2r_5429506_5430453_+]; CDS [2r_5429506_5430453_+]; CDS [2r_5430522_5431149_+]; exon [2r_5430522_5431750_+]; intron [2r_5430454_5430521_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------##################################################
CACAACCACTGGGATGCATTACTACGGATCGATCATGGGCAGGAGGATTGGTAAGTCTTCTGAAGCCTCTCCTGAAATTATGTCATAAAAAACTAAAATTCTTTTTCTACATTTACAGTAGTCCTCAGCAGCTGGACGATGAGCAGTTCTTTGAGAACTGCATGCGAT
**************************************************((((((.....((((............((((...))))............))))......))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
 SRR902009
testis
 M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
..............TGCATTACTACGGATCGATCATGGGC................................................................................................................................ 26 0 1 4.00 4 4 0 0 0 0 0 0 0 0
..............TGCATTACTACGGATCGATCATGGGCA............................................................................................................................... 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0
.........................................................................................................................TCCTCAGCAGCTGGACGATGAGCAGT..................... 26 0 1 2.00 2 1 0 0 1 0 0 0 0 0
..................................ATGGGCAGGAGGATTG...................................................................................................................... 16 0 1 1.00 1 0 1 0 0 0 0 0 0 0
....................................................................................................................TGTAGTCCTCAGCAGCTG.................................. 18 1 1 1.00 1 0 0 0 1 0 0 0 0 0
..............................................................................................................................AGCAGCTGGACGATGAGCAGTTCTT................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0
........................CGGATCGATCATGGGCAGG............................................................................................................................. 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0
....................................................................................................................................TGGACGATGAGCAGTTTTTTGAGAAC.......... 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0
.................ATTACTACGGATCGAG....................................................................................................................................... 16 1 1 1.00 1 0 1 0 0 0 0 0 0 0
..............................................................................................................................AGCAGCTGGACGATGAGCAGTTC................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......................TACGGATCGATCATGGGCAGGAGAT......................................................................................................................... 25 2 1 1.00 1 1 0 0 0 0 0 0 0 0
..................TTACTACGGATCGATCATGGGCA............................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...................TACTACGGATCGATCATGGGCAGGAG........................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0
...................TACTACGGATCGATCATGGGCAGGAGGA......................................................................................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...................TACTACGGATCGATCATGGGCAGGA............................................................................................................................ 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0
............GATGCATTACTACGGATCGATC...................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..............TGCATTACTACGGATCGATCATGG.................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................ATCGATCATGGGCAGGA............................................................................................................................ 17 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..............TGCATTACTACGGATCGATCATGGG................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................TGGACGATGAGCAGTTCTTTGAGAAC.......... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................CAGCAGCTGGACGATGAGCA....................... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0
...............GCATTACTACGGATCG......................................................................................................................................... 16 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................ATGGGCACGAGGATCCGTAA.................................................................................................................. 20 3 3 0.33 1 0 0 0 0 0 0 0 1 0
....................................................................................................................................TGGTCGATGAGGAGTTTTTT................ 20 3 14 0.07 1 0 0 0 0 1 0 0 0 0
.......................................CAGGCGGTTTTGTAAGTCT.............................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1
.........................................................CTCTGAAGGCGCTCCTGAA............................................................................................ 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0
.....................................................................................................................................GGACGGTGATCAGTTC................... 16 2 20 0.05 1 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

GTGTTGGTGACCCTACGTAATGATGCCTAGCTAGTACCCGTCCTCCTAACCATTCAGAAGACTTCGGAGAGGACTTTAATACAGTATTTTTTGATTTTAAGAAAAAGATGTAAATGTCATCAGGAGTCGTCGACCTGCTACTCGTCAAGAAACTCTTGACGTACGCTA
**************************************************((((((.....((((............((((...))))............))))......))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 O001
Testis
 SRR553488
RT_0-2 hours eggs
 O002
Head
 SRR902009
testis
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
..........................................................................TTTACTACAGTCTTTTCTGAT......................................................................... 21 3 13 2.23 29 0 29 0 0 0 0 0 0
........................................................................................TTTTGGTTTTAAGAAAAAGGTGT......................................................... 23 2 1 2.00 2 2 0 0 0 0 0 0 0
..............ACGTAATGGTGCATAGCTAGT..................................................................................................................................... 21 2 1 1.00 1 0 0 1 0 0 0 0 0
...............................................................................................................................CGTCGACCTGCTACTCGT....................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0
.......TGACCCTACGTAATGATGCCTA........................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 1 0 0 0
.....................................................................................................................................GCTGCTACTCGTCAAGAAGCT.............. 21 2 2 0.50 1 0 0 1 0 0 0 0 0
........................................................................................TTTTGGTTTCAAGAAAAAGGTGT......................................................... 23 3 5 0.20 1 1 0 0 0 0 0 0 0
......................................................................................GTTTTTGGTTTTAAGAAAAAGGT........................................................... 23 3 5 0.20 1 1 0 0 0 0 0 0 0
.........................................................AAGAATTCGGAGAGCGCTT............................................................................................ 19 3 13 0.08 1 0 0 0 0 0 0 1 0
.......................................................................................TTTTTGATCTTAAGAAAAC.............................................................. 19 2 15 0.07 1 1 0 0 0 0 0 0 0
.................................................................................................................ATGTCATCAGAAGTC........................................ 15 1 18 0.06 1 0 0 0 0 0 0 0 1
.......................................................AGAAGACTTCCGAGAGT................................................................................................ 17 2 20 0.05 1 0 0 0 0 0 1 0 0
ATGTTGGTGACACTAC........................................................................................................................................................ 16 2 20 0.05 1 0 0 0 0 0 1 0 0

Generated: 04/23/2015 at 02:08 PM