ID:

dsi_13851

 Coordinate:

3l:16426642-16426731 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [3l_16426557_16426641_+]; CDS [3l_16426557_16426641_+]; CDS [3l_16426732_16426797_+]; exon [3l_16426732_16426797_+]; intron [3l_16426642_16426731_+]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------##################################################
GGACGTGGTCACATCGTACCGCAGCTTGAGCTACGACCTGCAGAGTTTCGGTAAGCAACAGCTGATTAAAGCATCCCACCTGGCAAAGGTATTATTTATGTAAGTGCATCTATTATTTATACATTATTCTCTGCTTTTAGTGTTCAACGATGGCACTTCCAAGAAATTGTTCACCATACAGGGCACTATT
**************************************************...........(((...((((((.............(((((.((...((((....)))).)).))))).............)))))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
.....................................................AGCAACCGCTGATGAAAGCAG.................................................................................................................... 21 3 1 2.00 2 2 0 0 0 0 0
......................................................................................................................................................TGGCACTTCCAAGAAATTGTT................... 21 0 1 1.00 1 0 1 0 0 0 0
............................................GTTTCGGTAAGCAACAGC................................................................................................................................ 18 0 1 1.00 1 0 1 0 0 0 0
.......GTCACATCGTACCGCAGCTTGA................................................................................................................................................................. 22 0 1 1.00 1 0 0 1 0 0 0
....................................................TAGCAACCGCTGATGAAAGCA..................................................................................................................... 21 3 1 1.00 1 0 0 0 1 0 0
.................................TCACCTGCAGAGTCTCGGTA......................................................................................................................................... 20 3 5 0.20 1 0 0 0 0 1 0
..................................................................TTAAGCATCCCGCCTGG........................................................................................................... 17 2 10 0.20 2 2 0 0 0 0 0
.............................GCTACTACCAGCAGAGT................................................................................................................................................ 17 2 12 0.08 1 0 1 0 0 0 0
.............................GCTACGATCTGCTGAGT................................................................................................................................................ 17 2 15 0.07 1 0 0 0 0 0 1
...........CATCTTACCGCAGCATTAG................................................................................................................................................................ 19 3 20 0.05 1 0 1 0 0 0 0

Anti-sense strand reads

CCTGCACCAGTGTAGCATGGCGTCGAACTCGATGCTGGACGTCTCAAAGCCATTCGTTGTCGACTAATTTCGTAGGGTGGACCGTTTCCATAATAAATACATTCACGTAGATAATAAATATGTAATAAGAGACGAAAATCACAAGTTGCTACCGTGAAGGTTCTTTAACAAGTGGTATGTCCCGTGATAA
**************************************************...........(((...((((((.............(((((.((...((((....)))).)).))))).............)))))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 M023
head
 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
....................................................ATCGTTGGCGACTACTTTCGT..................................................................................................................... 21 3 1 3.00 3 3 0 0 0 0 0 0 0
...................................TGGACGTCTCAGAGCCAT......................................................................................................................................... 18 1 1 2.00 2 1 1 0 0 0 0 0 0
.................................................................................................................................AGACGAAAGTCACAAGTTGCT........................................ 21 1 1 1.00 1 0 0 0 1 0 0 0 0
............................TCGATGCAGGACGTCTTAAAG............................................................................................................................................. 21 2 1 1.00 1 0 0 1 0 0 0 0 0
.....................................................TCGTTGGCGACTACTTTCGTC.................................................................................................................... 21 3 1 1.00 1 1 0 0 0 0 0 0 0
.............................CGATGCTGGACGTCTCAAAGCCA.......................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 1 0 0 0
......................................................................................................................................................ACAGGGAAGGTTCTTTAA...................... 18 2 4 0.50 2 0 0 0 0 0 2 0 0
....................................GGACGTCTCAGAGCCAT......................................................................................................................................... 17 1 3 0.33 1 0 0 0 0 0 0 1 0
......................................ACGTCTCAGAGCCAT......................................................................................................................................... 15 1 9 0.22 2 0 2 0 0 0 0 0 0
.................................AGTGGACGTCTCAGAGCCAT......................................................................................................................................... 20 3 5 0.20 1 0 1 0 0 0 0 0 0
......................TCGAACTCGATGCAG......................................................................................................................................................... 15 1 10 0.10 1 0 0 1 0 0 0 0 0
...............................................................................................................................................AGTTGCTCCCGTTCAGGTTCT.......................... 21 3 13 0.08 1 0 0 0 0 0 0 0 1
....................................AGACGTCTCAGAGCCAT......................................................................................................................................... 17 2 14 0.07 1 1 0 0 0 0 0 0 0
.................................AGTGGACGTCTCAGAGCCA.......................................................................................................................................... 19 3 17 0.06 1 0 0 0 1 0 0 0 0
......................TCCGACTCGATGCTGGGC...................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 1
.........................AACTTGATGCTGGAGGTCC.................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 1

Generated: 04/24/2015 at 04:51 AM