ID:

dsi_13840

 Coordinate:

3r:4262618-4262678 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-8.1

Flybase annnotation

exon [3r_4262393_4262617_-]; CDS [3r_4262393_4262617_-]; CDS [3r_4262679_4263438_-]; exon [3r_4262679_4263438_-]; intron [3r_4262618_4262678_-]

No Repeatable elements found

mature
  1. 2l:3322464-3322479 -
  2. 2l:20716262-20716277 -
  3. 2l:21355818-21355833 -
  4. 2l:21844079-21844094 -
  5. 2l:22499140-22499155 -
  6. 2r:823626-823641 +
  7. 2r:1328487-1328502 -
  8. 2r:1351510-1351525 +
  9. 2r:2586194-2586209 +
  10. 3l:22444846-22444861 -
  11. 3l:22803271-22803286 +
  12. 3l:22876477-22876492 +
  13. 3l:22933314-22933329 +
  14. 3l:22993342-22993357 +
  15. dsi_13840  3r:4262655-4262670 -
  16. 4:385084-385099 -
  17. x:18586684-18586699 -
  18. x:20582263-20582278 +
  19. node_16498:1266-1281 -
  20. node_36773:891-906 -
star

Sense Strand Reads

##################################################-------------------------------------------------------------##################################################
CCGGCGGAGTTTCTCTCTAAGAACGTTTACCACCCACGAGTGGCTCTCAAGTGAGTAAAACTAGCTGAGTAACGCAAGGAAAGCTGACGAATCATTTAAATCATTTTAAAGAAACGCTATTACGGAGTGGCTACCGGAGTTCTTCATGAAAAAGGAGGCCT
**************************************************............................................((((((....)))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR618934
dsim w501 ovaries
..........TTCTCTCTAAGAACGTTTACCACCCACGA.......................................................................................................................... 29 0 1 1.00 1 1 0
..........................................................AACTAGCTGAGTAACG....................................................................................... 16 0 20 0.10 2 0 2

Anti-sense strand reads

GGCCGCCTCAAAGAGAGATTCTTGCAAATGGTGGGTGCTCACCGAGAGTTCACTCATTTTGATCGACTCATTGCGTTCCTTTCGACTGCTTAGTAAATTTAGTAAAATTTCTTTGCGATAATGCCTCACCGATGGCCTCAAGAAGTACTTTTTCCTCCGGA
**************************************************............................................((((((....)))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 M023
head
 SRR553488
RT_0-2 hours eggs
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
.............................................................................................................................TCACCGATGGCCTCAAGAAGT............... 21 0 1 1.00 1 1 0 0 0 0 0 0
.................................................................................TCGACTGCTTAGTAAATTT............................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0
........................................................................................................................ATGCCTCCCTGATGGTCTCA..................... 20 3 2 0.50 1 0 0 1 0 0 0 0
............................................................................................GTAAATTTGGTGAAACTTCTT................................................ 21 3 5 0.20 1 0 0 0 1 0 0 0
..............................................AGTTCACTGATTTAGATC................................................................................................. 18 2 8 0.13 1 0 0 0 0 1 0 0
.....................................................................................ATGCTTAGGAAATTTGGTA......................................................... 19 3 20 0.05 1 0 0 0 0 0 0 1
.....................CTGGAAATGCTGGGTGCT.......................................................................................................................... 18 3 20 0.05 1 1 0 0 0 0 0 0
.......................................................................................................AAAATTTCTTAGCGA........................................... 15 1 20 0.05 1 0 0 0 0 0 1 0

Generated: 04/23/2015 at 11:37 PM