ID:

dsi_13803

 Coordinate:

3l:8526753-8526902 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [3l_8526903_8526959_-]; exon [3l_8526903_8526959_-]; intron [3l_8525040_8526902_-]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAGTTGCGTCAAAGGGTGAGTCATCCACTATGGAAATATTCATAATTTGAAATATTTTTAAGTTTTTTTTTTTTTTGAATAGATTATTATATAGGTTTCTTTGGAATATTTTTTAACATTCTAAATTTATTGAGAGCGTCATGGTGCTTTTTTAGTCAATAAGATTATTTGCTGATGAAATCGGCGTGTGAGATATGACATATCCGAGGAAGTTA
**************************************************((((((..((((...))))...))))))(((((((((...)))))))))...................................((((((((.((....)).))))))))(((((((((((((......)))))......))))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 O002
Head
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M053
female body
..............GATGATCTTGAAGTTGAAC......................................................................................................................................................................................................................... 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
...........CAAGATGATCTTGAAGTTGAAC......................................................................................................................................................................................................................... 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TGTATTTGCTGATGAAATCGGA.............................. 22 3 2 1.00 2 0 0 0 0 2 0 0 0 0 0
.........................AGTTGAACGTGAGTTGCGT.............................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.................................GTGAGTTGCGTCAAAGGAT...................................................................................................................................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................AAATCGGCGTCGGAGATATTA................. 21 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...............................ACATGAGTAGCGTTAAAGGG....................................................................................................................................................................................................... 20 3 3 1.00 3 0 0 3 0 0 0 0 0 0 0
........................................................................................................................................................................................................................CGGCGTGTGAGATATGAC................ 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................................GAAATCGGCGTCGGAGATA.................... 19 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................ATGACAAATCGGAGGAAGGT. 20 3 8 0.25 2 0 0 0 0 0 0 2 0 0 0
........CACCATGATGATCTTGAAG............................................................................................................................................................................................................................... 19 2 6 0.17 1 0 0 0 0 0 0 0 1 0 0
...................................................................................................................................................................................................................AAAATCGGCGTCGGAGATAT................... 20 3 15 0.13 2 0 2 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................ATGATGAAATCGGCGTGG.......................... 18 2 9 0.11 1 0 0 0 0 0 0 1 0 0 0
...................................................................................................................................................................................................................GAAATCGGCGTCGGAGATAA................... 20 3 9 0.11 1 0 1 0 0 0 0 0 0 0 0
........CACCATGATGATCTTGAA................................................................................................................................................................................................................................ 18 2 12 0.08 1 0 0 0 0 0 0 0 1 0 0
...............................ACATGAGTAGCGTTAAAGG........................................................................................................................................................................................................ 19 3 16 0.06 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................TCATTTTATAAGTTTCTTTGG............................................................................................................... 21 3 18 0.06 1 0 0 0 0 0 0 0 0 1 0
.............................................................................................TATGTTTTTTTTTTTTTTGAA........................................................................................................................................ 21 1 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

AGGCAAACGAGGTTCTACTAGAACTTCAACTTGCACTCAACGCAGTTTCCCACTCAGTAGGTGATACCTTTATAAGTATTAAACTTTATAAAAATTCAAAAAAAAAAAAAACTTATCTAATAATATATCCAAAGAAACCTTATAAAAAATTGTAAGATTTAAATAACTCTCGCAGTACCACGAAAAAATCAGTTATTCTAATAAACGACTACTTTAGCCGCACACTCTATACTGTATAGGCTCCTTCAAT
**************************************************((((((..((((...))))...))))))(((((((((...)))))))))...................................((((((((.((....)).))))))))(((((((((((((......)))))......))))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
.....................................................................................................AAAAAAAAAACTTGCCTAATACT.............................................................................................................................. 23 3 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................AAAAATTTAAAAAAAAAAAAAACTT........................................................................................................................................ 25 1 2 0.50 1 0 1 0 0 0 0 0
........................................................................................................................................................................CTCTCAGTACCACGACCAAAT............................................................. 21 3 3 0.33 1 0 0 1 0 0 0 0
........................................................................................................................................................................CTCGCGGTCCCACCAAAAA............................................................... 19 3 16 0.19 3 0 0 3 0 0 0 0
...............................................................................................................................................AAAAAATTGTAAGAGTT.......................................................................................... 17 1 7 0.14 1 0 0 0 1 0 0 0
......................................................................................................AAAAAAAAACTTGCCTAATACT.............................................................................................................................. 22 3 9 0.11 1 0 0 0 1 0 0 0
.......................................................................................................................................................................................AAAAATCAGTTGTTCT................................................... 16 1 10 0.10 1 0 0 0 1 0 0 0
..........................................................................................................................................................................................................AAACGACTACTTTCGCTG.............................. 18 2 12 0.08 1 0 0 0 0 0 1 0
..................................................................................................AAAAAAAAAAAAACTCATGTAAT................................................................................................................................. 23 2 12 0.08 1 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................ATATTGTGTAGGCTCCT..... 17 2 14 0.07 1 0 0 0 0 1 0 0
...............................................................................................................................................AAAAAATTGTACGATT........................................................................................... 16 1 16 0.06 1 0 0 0 0 1 0 0
.......................................................................................................AAAAAAAACTTGCCTAATACT.............................................................................................................................. 21 3 20 0.05 1 1 0 0 0 0 0 0
....................................................................................................AAAAAAAACAACTTATCAAA.................................................................................................................................. 20 2 20 0.05 1 0 0 0 0 0 0 1
..........................................................................................AAACTTCAAAAAAAAAAAAA............................................................................................................................................ 20 1 20 0.05 1 0 1 0 0 0 0 0
................................................................................................................................................AAAAAATGTAAGATTGAAA....................................................................................... 19 2 20 0.05 1 0 0 0 0 1 0 0
...............................................................................................................................................AAAAAATTGTACGAT............................................................................................ 15 1 20 0.05 1 0 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:8526703-8526952 - dsi_13803 TCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAGTTGCGTCAAAGGGTGAGTCATCC---ACT----ATGGAAATATTCATAATTTGAA-----------------------------ATATTTTTAAGTTTTTTTTTT-----------------------------TT-------TTGAATAGAT----------------------------TATTATATAGGTTTCTTTGG-----------AATATTTTTTAACATTCTAAATTT-------------------ATTGAGAGCGTC----------------------------------------------ATGGTGC---TTTTTTAGTC--AATAAGATTATTTG--------------------------CTGATGAAATCGGCGTGTGA-----------------------------------G-A----TATGACATATCCGAG-----------------------------------------------------------------------------------------------------------------------------------------------GAAGTTA
droSec2 scaffold_0:1014707-1014955 - TCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAGTTGCGTCAAAGGGTGAGTCATCC---AAT----ATGGAAATATTCATAATTTTAA-----------------------------ATATTTTTAAGTTTTTT-TTT-----------------------------TT-------TTGAATAGAT----------------------------TATTATATAGGTTTCTTTGG-----------AATATTTTTTTTCATTCTAAATTT-------------------ATTGAGAGCGTC----------------------------------------------ATGGGGC---TTTCTTAGTC--CAGATGATTATTTG--------------------------CTGATGAAATCGGCGTGTGA-----------------------------------G-A----TATGACATATCCGAG-----------------------------------------------------------------------------------------------------------------------------------------------GAAGTTA
dm3 chr3L:8737176-8737424 - TCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAGTTGCGCCAAAGGGTGAGTCATTC---AAT----ATGGAAATATTCATAATTTTAA-----------------------------ATATTTTTAAGTTA-----------------------------T------TT-------TTGAACCGA-----------GTAT--TTTTAAGGTATT-A--CTATAGGTTTCTTTGG-----------AATATTTTTGAACATTCTTAATTT-------------------ATTGAGAGCAT-----------------------------------------------------C---GTTTTTAGTC--AATAAGATTATTTG--------------------------CTGATGAAATCGGCGTCAGA-----------------------------------G-A----TATGACATATCCGAG-----------------------------------------------------------------------------------------------------------------------------------------------GAAGTTA
droEre2 scaffold_4784:5305510-5305786 + TCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAGTTGCGTCAAAGGGTGAGTAATCC---AAA----ATGGAAAAATGTATAATTTTAA-----------------------------T-ATTTCTTA------------------------------TTATT-----TT-------TGGAATAGACTTTTGTTGTAGTAT--TTTTTAGGTATT-A--GAATAGATTTATGTGG-----------AATATAT--------TCCTTATATATAGGGTTGGAAGTATGTTCTTCCTAGGGTC----------------------------------------------ATTGGGC---TTTTTTAGTG--AATATGTTTTTTTG--------------------------CTGATGAAATCAGCTTGAGA-----------------------------------G-A----TATGACATATCTGAG-----------------------------------------------------------------------------------------------------------------------------------------------GAAGTTA
droYak3 3L:3172958-3173230 + TCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAGTTGCGTCAAAGGGTGAGTAATTC---CAG----ATGGAAATATAATTAATAACAA-----------------------------A-ATATTAT------------------------------ACTATTTTTT-----TTTATTTGTACGTG-----------GTAT--TTTTAAGGCATT-A--GTATAGATTTATGTGG-----------AATATTT--------CACCAATATGTAGAGTTTGAAGCTTTTTATTCCCAGGGTC----------------------------------------------ATTGGGC---TTTTTTAGTA--AATAAAATGATCGG--------------------------CTGATGAAATCAGCTTGAGA-----------------------------------G-A----TATGACATATCTGAG-----------------------------------------------------------------------------------------------------------------------------------------------GAAGTTA
droRho1 scf7180000757775:353-669 + TCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAGTTGCGTCAAAGGGTGAGTAATCC---AT-TTAA------------------TTAAATCTTTTTATATAGTCCTAGTAATTTTTGTAATTTTTAAGTGATTT------------------------------------------------------TTTTTGTAATGTCACTTTAAAGTATTTAAAATATAGGTC-------------------------------------------------------------CTTGAGAGCAAGATTTAAACCAATAGAATCCTTTAAGTTTAGACATCGTACGGCCTTTATGGACT---TAACATAGTTCTAAGACGTTTTTTTGCTAGCAAACTAGGGGCGTATATAATTCTGATAAAATCAGCTTGAGA-----------------------------------G-A----TATGACATATCCAAG-----------------------------------------------------------------------------------------------------------------------------------------------GAAGTAA
droKik1 scf7180000302474:228608-228882 + TCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAATTGCGTCAAAGGGTGAGTAATTG---TA-TT------------------------------------------------TA---------------------------------------ATGTTAATATT----------------AAGGG-----------GATT--TTAAAAGGGTTT-A------------CTTTGCATATAAGTTATAATATTTTTG-------------T-------------------A---TA-----------------------------------------A-----AGGAGATTAAGTTTTTTTTTAAGTA--AAGAAAATCTATAA--------------------------CTAATTGAGTCATACTTTGAGAATAGTTATACATTTTTCTAGA------------------------------------------------------------------------------------------TTTTGAGATAACTTTAATTAGATATATTACAATCCACTTCCACCTGC---TCGAAGGC------------------------------GGGTTA
droAna3 scaffold_13337:7903381-7903565 + TCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAACTGCGTCAAAGGGTGAGTAATAT----------ATGGCTTTATGAATAATT--------------------------------------------------------------------------TATTTTTAA--TATTTT-----------------------------------------------------------------------------------------AATTT-------------------A----------------------------------------------GTAGAGT-GTTATAAGGA---CTT----AT------------------------------------------------------AGCT--AG-----------------AATTAG---ATATTTTCAAG-A----TATGACAT----GCGGAAA---------------------------------------------------------------------------------------ACTTTCACCTGAAAATCTTGGGT-----------------------------------G
droBip1 scf7180000396541:59883-60028 + TCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAGCTGCGTCAAAGGGTGAGTAATCT---AC-----------------------------------------------------------------------------------------------ACTA---------TATTTT-----------------------------------------------------------------------------------------AAG-----------------------------------------------------------------ATGGTAAAGGGGATATGGGGA---TTA----GTAGTTAGA----------------------------------------------GAGCTAGAAA-----------------------------------G-A----TATGACAT----GCGGAAA---------------------------------------------------------------------------------------ACTTTCACC-------------------------------------------------G
dp5 XR_group8:8852038-8852261 + TCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAATTGCGTCAAAGGGTGAGTAATGA---TT-TT------------------------------------------------TT------CTA-TAAACATACC-TACATAT--GTACATATTAGAACTATTTTTGG--TGTTTTT---------------TTG--------------------------------------------------------------------------------------------------TA-----------------------------------------G-----GGGAAGTT-----T----------------------------------------------------------TGAGTCATAGTTTG-----------------TTCTGGAAAATATCTTGTAA-A----TGTAACAC--------------------------------------ATTTTTCA-ACTATTTCTAATTTTCTTTTGGGGGA-------------------------GCTTT------TAAGTCATG--------------------------------------G
droPer2 scaffold_50:354202-354369 - TCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAATTGCGTCAAAGGGTGAGTAATGA---TT-TT------------------------------------------------TT------CTA-TAAACATACC-TATGTAT--ATACATATTAGAACTATTTTTGG--TGTTTTT---------------TTA--------------------------------------------------------------------------------------------------TG-----------------------------------------G-----GGGAAGTT-----T----------------------------------------------------------TGAGTCATAGTTTG-----------------TTCTGGAAAATAT-----------------------------------------------------------ATTTTTTA--------------------------------------------------------------------------------------------------------------A
droWil2 scf2_1100000004511:8119187-8119417 + TCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAATTGCGTCAAAGGGTGAGTTATAC---TT-TT------------------------------------------------TA------TAT-TCACTAGACT-TAA------GTTCAAATTGG-ATTATTTTATA--TATT------------------------------------------------------------------------------------------TAATTT-------------------AATAAGCAAA-------------------------------------------------T-------------------------------------------------------------------------------------------------AGTTG---ATTAGACTAAAAATCTTAATATTAG----GCAGAAATCA---------------------AAAA--AGGGAAAGA-TGTTT-----------------------------------------------CACATGC---TTACCGGC---TAGAAATTGATGTAGATGATGATGATGATGAT-
droVir3 scaffold_13049:6400788-6400998 - dvi_18653 TCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAGCTGCGTCAAAGGGTAAGTTATCA---AC-TA------------------------------------------------TT------C-----------------------------ATAACAATTATATTAAA--TAAATAT---------------TAA--------------------------------------------------------------------------------------------------AA-----------------------------------------T-----GGAAAGT-------------------------------------------------------------------------------------------------AGTAG---AAATGTCTAAG-ACCCAAATTCCAG----GCAGATAACATTTACGTTCTTCGAGAAAACCTAAACGCTGTAAGGT-TTTCT-----------------------------------------------CACCTGC---TTAAGGGCGGCCAGAG---------------------GAA----
droMoj3 scaffold_6680:4720947-4721002 - TCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAGCTGCGCCAAAGGGTAAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15110:6343116-6343300 + TCCGTTTGCTCCACGATGATCTGGAAGTTGAACGTGAGCTGCGTCAAAGGGTAAGTTGAGATACCAA----ATG------------ATTGATA-----------------------------ATACTATTAAATATTAC-TTAATATGGGTACACAAAATAACTCT-TCAGT--TATCTTT---------------TCG---------------------------------------------------------------CATTGCAAACTC-------------------TTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAT-ATTCT-----------------------------------------------CACCTGC---TTATGGGCGGCAAT--------------------------AATA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAGTTGCGTCAAAGGGTGAGTCATCC---ACT----ATGGAAATATTCATAATTTGAA-----------------------------ATATTTTTAAGTTTTTTTTTT-----------------------------TT-------TTGAATAGAT----------------------------TATTATATAGGTTTCTTTGG-----------AATATTTTTTAACATTCTAAATTT-------------------ATTGAGAGCGTC----------------------------------------------ATGGTGC---TTTTTTAGTC--AATAAGATTATTTG--------------------------CTGATGAAATCGGCGTGTGA-----------------------------------G-A----TATGACATATCCGAG-----------------------------------------------------------------------------------------------------------------------------------------------GAAGTTASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............GATGATCTTGAAGTTGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00200200000000000000
...........CAAGATGATCTTGAAGTTGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.00200200000000000000
.........................AGTTGAACGTGAGTTGCGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000000000100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCGTGTGA-----------------------------------G-A----TATGAC...............................................................................................................................................................1811.00100000100000000000
droSec2
TCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAGTTGCGTCAAAGGGTGAGTCATCC---AAT----ATGGAAATATTCATAATTTTAA-----------------------------ATATTTTTAAGTTTTTT-TTT-----------------------------TT-------TTGAATAGAT----------------------------TATTATATAGGTTTCTTTGG-----------AATATTTTTTTTCATTCTAAATTT-------------------ATTGAGAGCGTC----------------------------------------------ATGGGGC---TTTCTTAGTC--CAGATGATTATTTG--------------------------CTGATGAAATCGGCGTGTGA-----------------------------------G-A----TATGACATATCCGAG-----------------------------------------------------------------------------------------------------------------------------------------------GAAGTTASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........................AGTTGAACGTGAGTTGCGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020020
..................ATCTTGAAGTTGAACGTGAGTTGCGTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010010
..............GATGATCTTGAAGTTGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0011000
..........................GTTGAACGTGAGTTGCGTCAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000
.......................GAAGTTGAACGTGAGTTGCGTCAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
.............AGATGATCTTGAAGTTGAACGTGAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100
..................ATCTTGAAGTTGAACGTGAGTTGCGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010
..........................GTTGAACGTGAGTTGCGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
dm3
TCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAGTTGCGCCAAAGGGTGAGTCATTC---AAT----ATGGAAATATTCATAATTTTAA-----------------------------ATATTTTTAAGTTA-----------------------------T------TT-------TTGAACCGA-----------GTAT--TTTTAAGGTATT-A--CTATAGGTTTCTTTGG-----------AATATTTTTGAACATTCTTAATTT-------------------ATTGAGAGCAT-----------------------------------------------------C---GTTTTTAGTC--AATAAGATTATTTG--------------------------CTGATGAAATCGGCGTCAGA-----------------------------------G-A----TATGACATATCCGAG-----------------------------------------------------------------------------------------------------------------------------------------------GAAGTTASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............AGATGATCTTGAAGTTGAACGTGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000010000000000000000000000000000000001000000
....................CTTGAAGTTGAACGTGAGTTGCGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............AGATGATCTTGAAGTTGAACGTGAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
............................TGAACGTGAGTTGCGCCAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................CGTGAGTTGCGCCAAAGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................GAACGTGAGTTGCGCCAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................A--CTATAGGTTTCTTTGG-----------A.....................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................GTTGAACGTGAGTTGCGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..............GATGATCTTGAAGTTGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................ATCTTGAAGTTGAACGTGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
........................AAGTTGAACGTGAGTTGCGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............AGATGATCTTGAAGTTGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.............AGATGATCTTGAAGTTGAACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
............AAGATGATCTTGAAGTTGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TCTTGAAGTTGAACGTGAGTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.........................AGTTGAACGTGAGTTGCGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............AAGATGATCTTGAAGTTGAACGTGAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
........................................................................................................................................................................................................................................................................................................GAGAGCAT-----------------------------------------------------C---GTTTTTAGTC--AATA.......................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............GATGATCTTGAAGTTGAACGTGAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
..........................GTTGAACGTGAGTTGCGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................GTTGAACGTGAGTTGCGCCAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.............AGATGATCTTGAAGTTGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............GATGATCTTGAAGTTGAACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCAGA-----------------------------------G-A----TATGACATATCCGA.......................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAGTTGCGTCAAAGGGTGAGTAATCC---AAA----ATGGAAAAATGTATAATTTTAA-----------------------------T-ATTTCTTA------------------------------TTATT-----TT-------TGGAATAGACTTTTGTTGTAGTAT--TTTTTAGGTATT-A--GAATAGATTTATGTGG-----------AATATAT--------TCCTTATATATAGGGTTGGAAGTATGTTCTTCCTAGGGTC----------------------------------------------ATTGGGC---TTTTTTAGTG--AATATGTTTTTTTG--------------------------CTGATGAAATCAGCTTGAGA-----------------------------------G-A----TATGACATATCTGAG-----------------------------------------------------------------------------------------------------------------------------------------------GAAGTTASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............GATGATCTTGAAGTTGAACGTGAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000020
.........................AGTTGAACGTGAGTTGCGTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001000
............AAGATGATCTTGAAGTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
..............GATGATCTTGAAGTTGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0011000000
..........................GTTGAACGTGAGTTGCGTCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-A----TATGACATATCTGAG-----------------------------------------------------------------------------------------------------------------------------------------------GAA....2011.0010001000
.........................AGTTGAACGTGAGTTGCGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
..........................GTTGAACGTGAGTTGCGTCAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
..............GATGATCTTGAAGTTGAACGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010001000
.........................AGTTGAACGTGAGTTGCGTCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001000
....................CTTGAAGTTGAACGTGAGTTGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000
..............GATGATCTTGAAGTTGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000
....................CTTGAAGTTGAACGTGAGTTGCGTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000010
...............ATGATCTTGAAGTTGAACGTGAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000010
droYak3
TCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAGTTGCGTCAAAGGGTGAGTAATTC---CAG----ATGGAAATATAATTAATAACAA-----------------------------A-ATATTAT------------------------------ACTATTTTTT-----TTTATTTGTACGTG-----------GTAT--TTTTAAGGCATT-A--GTATAGATTTATGTGG-----------AATATTT--------CACCAATATGTAGAGTTTGAAGCTTTTTATTCCCAGGGTC----------------------------------------------ATTGGGC---TTTTTTAGTA--AATAAAATGATCGG--------------------------CTGATGAAATCAGCTTGAGA-----------------------------------G-A----TATGACATATCTGAG-----------------------------------------------------------------------------------------------------------------------------------------------GAAGTTASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............GATGATCTTGAAGTTGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.00300100020000
..............GATGATCTTGAAGTTGAACGTGAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.00300100020000
.............AGATGATCTTGAAGTTGAACGTGAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.00200000020000
.............AGATGATCTTGAAGTTGAACGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000100000
........................AAGTTGAACGTGAGTTGCGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
.............AGATGATCTTGAAGTTGAACGTGAGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
..........................GTTGAACGTGAGTTGCGTCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
..............GATGATCTTGAAGTTGAACGTGAGTTGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000
.......................GAAGTTGAACGTGAGTTGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000
.CCGTTTGCTCCAAGATGATCTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000
..............GATGATCTTGAAGTTGAACGTGAGTTGCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000010000
droRho1
TCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAGTTGCGTCAAAGGGTGAGTAATCC---AT-TTAA------------------TTAAATCTTTTTATATAGTCCTAGTAATTTTTGTAATTTTTAAGTGATTT------------------------------------------------------TTTTTGTAATGTCACTTTAAAGTATTTAAAATATAGGTC-------------------------------------------------------------CTTGAGAGCAAGATTTAAACCAATAGAATCCTTTAAGTTTAGACATCGTACGGCCTTTATGGACT---TAACATAGTTCTAAGACGTTTTTTTGCTAGCAAACTAGGGGCGTATATAATTCTGATAAAATCAGCTTGAGA-----------------------------------G-A----TATGACATATCCAAG-----------------------------------------------------------------------------------------------------------------------------------------------GAAGTAASizeHit CountTotal NormTotal
No Reads
droKik1
TCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAATTGCGTCAAAGGGTGAGTAATTG---TA-TT------------------------------------------------TA---------------------------------------ATGTTAATATT----------------AAGGG-----------GATT--TTAAAAGGGTTT-A------------CTTTGCATATAAGTTATAATATTTTTG-------------T-------------------A---TA-----------------------------------------A-----AGGAGATTAAGTTTTTTTTTAAGTA--AAGAAAATCTATAA--------------------------CTAATTGAGTCATACTTTGAGAATAGTTATACATTTTTCTAGA------------------------------------------------------------------------------------------TTTTGAGATAACTTTAATTAGATATATTACAATCCACTTCCACCTGC---TCGAAGGC------------------------------GGGTTASizeHit CountTotal NormTotal
No Reads
droAna3
TCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAACTGCGTCAAAGGGTGAGTAATAT----------ATGGCTTTATGAATAATT--------------------------------------------------------------------------TATTTTTAA--TATTTT-----------------------------------------------------------------------------------------AATTT-------------------A----------------------------------------------GTAGAGT-GTTATAAGGA---CTT----AT------------------------------------------------------AGCT--AG-----------------AATTAG---ATATTTTCAAG-A----TATGACAT----GCGGAAA---------------------------------------------------------------------------------------ACTTTCACCTGAAAATCTTGGGT-----------------------------------GSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............AGATGATCTTGAAGTTGAACGTGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.002000020
..............GATGATCTTGAAGTTGAACGTGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.002000011
.............AGATGATCTTGAAGTTGAACGTGAACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000001
..................ATCTTGAAGTTGAACGTGAACTGCGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
.............AGATGATCTTGAAGTTGAACGTGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
..............GATGATCTTGAAGTTGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
.....................TTGAAGTTGAACGTGAACTGCGTCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000010
..............GATGATCTTGAAGTTGAACGTGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
...GTTTGCTCCAAGATGATCTTGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
....................CTTGAAGTTGAACGTGAACTGCGTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
..............GATGATCTTGAAGTTGAACGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
droBip1
TCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAGCTGCGTCAAAGGGTGAGTAATCT---AC-----------------------------------------------------------------------------------------------ACTA---------TATTTT-----------------------------------------------------------------------------------------AAG-----------------------------------------------------------------ATGGTAAAGGGGATATGGGGA---TTA----GTAGTTAGA----------------------------------------------GAGCTAGAAA-----------------------------------G-A----TATGACAT----GCGGAAA---------------------------------------------------------------------------------------ACTTTCACC-------------------------------------------------GSizeHit CountTotal NormTotal
No Reads
dp5
TCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAATTGCGTCAAAGGGTGAGTAATGA---TT-TT------------------------------------------------TT------CTA-TAAACATACC-TACATAT--GTACATATTAGAACTATTTTTGG--TGTTTTT---------------TTG--------------------------------------------------------------------------------------------------TA-----------------------------------------G-----GGGAAGTT-----T----------------------------------------------------------TGAGTCATAGTTTG-----------------TTCTGGAAAATATCTTGTAA-A----TGTAACAC--------------------------------------ATTTTTCA-ACTATTTCTAATTTTCTTTTGGGGGA-------------------------GCTTT------TAAGTCATG--------------------------------------GSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....................CTTGAAGTTGAACGTGAATTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020200000000
.........................AGTTGAACGTGAATTGCGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
..............GATGATCTTGAAGTTGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
..................ATCTTGAAGTTGAACGTGAATTGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000001
..............GATGATCTTGAAGTTGAACGTGAATT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000001
droPer2
TCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAATTGCGTCAAAGGGTGAGTAATGA---TT-TT------------------------------------------------TT------CTA-TAAACATACC-TATGTAT--ATACATATTAGAACTATTTTTGG--TGTTTTT---------------TTA--------------------------------------------------------------------------------------------------TG-----------------------------------------G-----GGGAAGTT-----T----------------------------------------------------------TGAGTCATAGTTTG-----------------TTCTGGAAAATAT-----------------------------------------------------------ATTTTTTA--------------------------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..............GATGATCTTGAAGTTGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002010001
..........................GTTGAACGTGAATTGCGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000
..............GATGATCTTGAAGTTGAACGTGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
..............GATGATCTTGAAGTTGAACGTGAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001001000
.................GATCTTGAAGTTGAACGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
..............GATGATCTTGAAGTTGAACGTGAATT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001001000
droWil2
TCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAATTGCGTCAAAGGGTGAGTTATAC---TT-TT------------------------------------------------TA------TAT-TCACTAGACT-TAA------GTTCAAATTGG-ATTATTTTATA--TATT------------------------------------------------------------------------------------------TAATTT-------------------AATAAGCAAA-------------------------------------------------T-------------------------------------------------------------------------------------------------AGTTG---ATTAGACTAAAAATCTTAATATTAG----GCAGAAATCA---------------------AAAA--AGGGAAAGA-TGTTT-----------------------------------------------CACATGC---TTACCGGC---TAGAAATTGATGTAGATGATGATGATGATGAT-SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..............GATGATCTTGAAGTTGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1915.00500410
..............GATGATCTTGAAGTTGAACGTGAATT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.00300120
...............ATGATCTTGAAGTTGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00220000
.........................AGTTGAACGTGAATTGCGTCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00200110
.........................AGTTGAACGTGAATTGCGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00200200
.............AGATGATCTTGAAGTTGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200020
......................TGAAGTTGAACGTGAATTGCGTCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.00200200
..............GATGATCTTGAAGTTGAACGTGAATTGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.00200110
..............GATGATCTTGAAGTTGAACGTGAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.00200200
.......................GAAGTTGAACGTGAATTGCGTCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.00200002
....................CTTGAAGTTGAACGTGAATTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
.................GATCTTGAAGTTGAACGTGAATTGCGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100
.......................GAAGTTGAACGTGAATTGCGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
............AAGATGATCTTGAAGTTGAACGTGAATT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100100
.........................AGTTGAACGTGAATTGCGTCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100
..............GATGATCTTGAAGTTGAACGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100
..................ATCTTGAAGTTGAACGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
droVir3
TCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAGCTGCGTCAAAGGGTAAGTTATCA---AC-TA------------------------------------------------TT------C-----------------------------ATAACAATTATATTAAA--TAAATAT---------------TAA--------------------------------------------------------------------------------------------------AA-----------------------------------------T-----GGAAAGT-------------------------------------------------------------------------------------------------AGTAG---AAATGTCTAAG-ACCCAAATTCCAG----GCAGATAACATTTACGTTCTTCGAGAAAACCTAAACGCTGTAAGGT-TTTCT-----------------------------------------------CACCTGC---TTAAGGGCGGCCAGAG---------------------GAA----SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................TTGAACGTGAGCTGCGTCAAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2314.004000000000000000000000000000000000000000000000000000000000000004
..............GATGATCTTGAAGTTGAACGTGAGCTGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2813.003000300000000000000000000000000000000000000000000000000000000000
..............GATGATCTTGAAGTTGAACGTGAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.002000200000000000000000000000000000000000000000000000000000000000
.............AGATGATCTTGAAGTTGAACGTGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.002000000000000000000000010000000000000000000000000000000000000100
.........................AGTTGAACGTGAGCTGCGTCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002001000000000000000000000000000000000000000000000000000000000010
..........................GTTGAACGTGAGCTGCGTCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002000000000000000101000000000000000000000000000000000000000000000
............................TGAACGTGAGCTGCGTCAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
..............GATGATCTTGAAGTTGAACGTGAGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000100000000000000000000000000000000000000000000000000000000000
..........................GTTGAACGTGAGCTGCGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000001000000000000000000000000000000000000000000000
..............GATGATCTTGAAGTTGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000001000000000000000000000000000000000000000000000000
.......GCTCCAAGATGATCTTGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000100000000000000000000000000000000000000000000
.............AGATGATCTTGAAGTTGAACGTGAGCTGCGTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3211.001000000000000000000000000000000000000000000000000000000001000000
......................TGAAGTTGAACGTGAGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000100
.........................AGTTGAACGTGAGCTGCGTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000010000000000000000000000000000000000000000000000
................TGATCTTGAAGTTGAACGTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000010000000000000000000000000000000000000000000000000000
....TTTGCTCCAAGATGATCTTGAAGTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000010000000000000000000000000000000000000000000000
.....................TTGAAGTTGAACGTGAGCTGCGTCAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
..........................GTTGAACGTGAGCTGCGTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000001000000000000000000000000000000000000000000000
...............ATGATCTTGAAGTTGAACGTGAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000100000000000000000000000000000000000000000000000000000000000
droMoj3
TCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAGCTGCGCCAAAGGGTAAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............GATGATCTTGAAGTTGAACGTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2413.003000003
..............GATGATCTTGAAGTTGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.003100002
...........CAAGATGATCTTGAAGTTGAACGTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
.........................AGTTGAACGTGAGCTGCGCCAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
.......................GAAGTTGAACGTGAGCTGCGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
.........................AGTTGAACGTGAGCTGCGCCAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
..............GATGATCTTGAAGTTGAACGTGAGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
..............GATGATCTTGAAGTTGAACGTGAGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
............AAGATGATCTTGAAGTTGAACGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
.......GCTCCAAGATGATCTTGAAGTTGAACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
......TGCTCCAAGATGATCTTGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.CCGTTTGCTCCAAGATGATCTTGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
...GTTTGCTCCAAGATGATCTTGAAGTTGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001100000
.........TCCAAGATGATCTTGAAGTTGAACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
..............GATGATCTTGAAGTTGAACGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000
droGri2
TCCGTTTGCTCCACGATGATCTGGAAGTTGAACGTGAGCTGCGTCAAAGGGTAAGTTGAGATACCAA----ATG------------ATTGATA-----------------------------ATACTATTAAATATTAC-TTAATATGGGTACACAAAATAACTCT-TCAGT--TATCTTT---------------TCG---------------------------------------------------------------CATTGCAAACTC-------------------TTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAT-ATTCT-----------------------------------------------CACCTGC---TTATGGGCGGCAAT--------------------------AATASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 08:51 AM