ID:

dsi_13792

 Coordinate:

3l:7791301-7791450 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GATGTCCAGCCGGATCGTCCCATCGGCTATGGAGCATTCGGAGTTGTCTGGTAAGTGGAATGAATCTATATCTCAGTGCAATAATCCAGATTATGTGCGGAGGGTGTTGCCATAGTATTGGCACAATCAAATTTTTGTTTTTCGTTTGACAAGCATGGTTATTTTTGGGTTGTTTTGCTGGTTGTCCGAAGACATACCGCCGAAATGGGCAAATATATTTGGGAATTATAAGATAATAGGTGGTCATATC
**************************************************....((((.(((..((((((..((((((.(((((((((((...(((((....(((..(((((......)))))..)))......(((((........))))))))))......))))))))))).)))))).)))....)))))).))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 M023
head
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 O001
Testis
 M053
female body
 GSM343915
embryo
.............................................GTCTGGTAATTGGAATGA........................................................................................................................................................................................... 18 1 1 40.00 40 22 7 7 2 1 1 0 0 0 0
..............................................TCTGGTAATTGGAATGA........................................................................................................................................................................................... 17 1 1 19.00 19 15 3 1 0 0 0 0 0 0 0
.............................................GTCTTGTAATTGGAATGA........................................................................................................................................................................................... 18 2 13 15.00 195 6 3 0 123 61 0 0 0 2 0
............................................AGTCTGGTAATTGGAATGA........................................................................................................................................................................................... 19 2 2 7.00 14 5 3 3 0 1 0 2 0 0 0
.............................................GTCTGGTAATTGGAATGAGT......................................................................................................................................................................................... 20 2 2 3.50 7 5 1 1 0 0 0 0 0 0 0
...............................................CTGGTAATTGGAATGA........................................................................................................................................................................................... 16 1 3 3.33 10 8 0 2 0 0 0 0 0 0 0
.............................................GTCTGGTAATTGGAATGAGTA........................................................................................................................................................................................ 21 3 7 2.86 20 6 2 12 0 0 0 0 0 0 0
..............................................TCTGGTAATTGGAATG............................................................................................................................................................................................ 16 1 10 2.80 28 22 3 2 0 0 0 1 0 0 0
...........................................GAGTCTGGTAATTGGAATGA........................................................................................................................................................................................... 20 3 8 2.63 21 10 7 2 0 1 1 0 0 0 0
.............................................GTCTGGTAATTGGAATG............................................................................................................................................................................................ 17 1 5 2.00 10 10 0 0 0 0 0 0 0 0 0
..............................................TCTGGTAATTGGAATGAG.......................................................................................................................................................................................... 18 2 10 1.40 14 6 7 1 0 0 0 0 0 0 0
.ATGTCCAGCCGGATCGTCCCA.................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
.............................................GTCTGGTAATTGGAATGAG.......................................................................................................................................................................................... 19 2 4 1.00 4 2 2 0 0 0 0 0 0 0 0
...........................................................................................................................................TTTCGTGTGACTACCATGGTT.......................................................................................... 21 3 1 1.00 1 0 0 0 0 0 1 0 0 0 0
............................................TGTCTGGTAATTGGAATGA........................................................................................................................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................TCTGGTAATTGGAATGAGT......................................................................................................................................................................................... 19 2 2 1.00 2 1 0 1 0 0 0 0 0 0 0
..........................................CTAGTCTGGTAATTGGAATGA........................................................................................................................................................................................... 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................GTCTGGTAATTGGAAT............................................................................................................................................................................................. 16 1 10 1.00 10 9 1 0 0 0 0 0 0 0 0
..........................................AGTGTCTGGTAATTGGAATGA........................................................................................................................................................................................... 21 3 6 0.83 5 3 2 0 0 0 0 0 0 0 0
..............................................TCTGGTAATTGGAATGAGTA........................................................................................................................................................................................ 20 3 19 0.79 15 7 2 5 0 0 0 0 0 1 0
............................................AGTCTGGTAATTGGAATGAGT......................................................................................................................................................................................... 21 3 6 0.67 4 3 0 1 0 0 0 0 0 0 0
................................................TGGTAATTGGAATGA........................................................................................................................................................................................... 15 1 20 0.65 13 12 0 1 0 0 0 0 0 0 0
...........................................GTGTCTGGTAATTGGAATGA........................................................................................................................................................................................... 20 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0
.......................................GGAGATGTTTGGTAAGTGGAA.............................................................................................................................................................................................. 21 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0
...............................................CTGGTAATTGGAATG............................................................................................................................................................................................ 15 1 20 0.35 7 7 0 0 0 0 0 0 0 0 0
...........................................GTGTCTGGTAATTGGAATGAG.......................................................................................................................................................................................... 21 3 7 0.29 2 0 2 0 0 0 0 0 0 0 0
............................................AGTCTGGTAATTGGAATGAG.......................................................................................................................................................................................... 20 3 15 0.20 3 2 0 1 0 0 0 0 0 0 0
............................................CGTCTGGTAATTGGAATGAG.......................................................................................................................................................................................... 20 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0
.............................................CTCTGGTAATTGGAATGAGT......................................................................................................................................................................................... 20 3 8 0.13 1 0 0 1 0 0 0 0 0 0 0
.....................................TCGGGGTTGTCTAGTAA.................................................................................................................................................................................................... 17 2 10 0.10 1 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................TGCTTTTTTTCGTTTGACAAG................................................................................................. 21 3 15 0.07 1 0 0 0 0 0 0 1 0 0 0
................................................TGGTAATTGGAATGAGT......................................................................................................................................................................................... 17 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................TTTGGTTATTTTGCTGGGTG.................................................................. 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1
............................................TGTCTCGTAATCGGAATGA........................................................................................................................................................................................... 19 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

CTACAGGTCGGCCTAGCAGGGTAGCCGATACCTCGTAAGCCTCAACAGACCATTCACCTTACTTAGATATAGAGTCACGTTATTAGGTCTAATACACGCCTCCCACAACGGTATCATAACCGTGTTAGTTTAAAAACAAAAAGCAAACTGTTCGTACCAATAAAAACCCAACAAAACGACCAACAGGCTTCTGTATGGCGGCTTTACCCGTTTATATAAACCCTTAATATTCTATTATCCACCAGTATAG
**************************************************....((((.(((..((((((..((((((.(((((((((((...(((((....(((..(((((......)))))..)))......(((((........))))))))))......))))))))))).)))))).)))....)))))).))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M023
head
 M024
male body		 M025
embryo
 SRR553487
NRT_0-2 hours eggs
......................................................................................................................................................................................ACAGGCTTCTGGCTGG.................................................... 16 2 20 1.05 21 21 0 0 0 0 0
..........................................................................TCACGTTACTAGGGCTAAGACA.......................................................................................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0
........CGGACTAGCAGGGTAGCCT............................................................................................................................................................................................................................... 19 2 2 0.50 1 0 1 0 0 0 0
................................CCGTAAGCCTCAAAAGAC........................................................................................................................................................................................................ 18 2 7 0.43 3 0 0 2 0 1 0
................................CCGTAAGCCTCAATAGAC........................................................................................................................................................................................................ 18 2 5 0.20 1 0 0 0 1 0 0
.........GGACGAGCAGGGTAGCC................................................................................................................................................................................................................................ 17 2 15 0.20 3 0 3 0 0 0 0
...AAGGTCGGCCTAGCCGG...................................................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 1

Generated: 04/24/2015 at 10:29 AM