| droSim2 | 
	2r:18130868-18131039 + | 
	dsi_13777 | 
	AACTACAAAATACGAGTCCT--GAAAACTAAGCTAC-T-----AGCGCCAAAAGCAGAGTAGGTATTC------------------------------AGATAATTGTGAGA-TAG---------T-----------------------TTGTAACC---------CAAATTCAAGTGCTGCAAAA------TTA-AACACTTAATAAGGGCGACATGGAGAAGGTTTGTCAGTTTTTCCGCAACAACTACGTGCTGGC | 
	| droSec2 | 
	scaffold_9:902161-902332 + | 
	 | 
	AACTACAAAATACGAGTCCT--GAAAACTAAGCTAC-T-----AGCGCCAAAAGCAGAGTAGGTATTC------------------------------AGATAATTGTGAGA-TAG---------T-----------------------TTGGAACC---------CAAATTCAAGTGCTGCAAAA------TTA-AACACTTAATAAGGGCGACATGGAGAAGGTTTGTCAGTTTTTCCGCAACAACTACGTGCTGGC | 
	| dm3 | 
	chr2R:17576411-17576591 + | 
	 | 
	AACTACAAAAGACAAGGCCT--GAAAACTAAGCTAC-T-----AGCGCCAAAAACAGAGTAGGTTTTC------------------------------CAAAGAGTGTGAAA-TAG---------T-----------------------TTGGAACCCAAGACAACCAAATTCAAGTGCTGCAGAA------GTA-AACACTTAATAAGGGCGACATGGAGAAGGTTTGTCAGTTTTTCCGCAACAACTACGTGCTGGC | 
	| droEre2 | 
	scaffold_4845:11724962-11725140 + | 
	 | 
	AACTACAAAATTCGAGCCCT--GAAAACAAAGCTAC-T-----AGCACCAAAAACATAGTAGGTTTTC------------------------------AGAAGAGTG--AAA-TAG---------T-----------------------TTGGAATCCAGGACTACCAAATTCGAGTACTGCAGAA------GTA-AACACTTATTAAAGGCGACATGGAGAAGGTTTGTCAGTTTTTCCGCAACAACTACGTGCTGGC | 
	| droYak3 | 
	2R:11594490-11594668 - | 
	 | 
	AACTACAAAACTTGAGTCCT--GAGAACAAAGCTAC-T-----AGCACCAAAAACATAGTAGGTTTTC------------------------------AGAAGAGTG--AAA-TTG---------T-----------------------TTGGAATCCAAGACTACTAAATTCAAGTACAGCAGAA------GTA-GACACTTATTGGAGGCGACATGGAGAAGATTTGTCAGTTCTTCCGCAACAACTATGTGCTGGC | 
	| droEug1 | 
	scf7180000409672:7392814-7392993 + | 
	 | 
	AACTAAACATTTCGAATCCT--GAAAAATAAGATACGT-----TTTGCCAAAAACCCAGTACGTTTTC------------------------------AGAAGTGTGTTAAA-TTT-------TTT-----------------------TTGGAACTAAAATCTGCAAAATTTAAGTACTACAGAAAA------A-A----AGTTTTAAAACGAAATGGAAAAGGTTTGCCAGTTTTTTCGAAACAACTATGTGCTGGC | 
	| droBia1 | 
	scf7180000301754:4676094-4676276 + | 
	 | 
	AGGTACAAATTTCGAGTCCT--GAGAATTAGGCAAC-C-----TT-CCCAAAAACATAGTAGGTTTTC------------------------------AGACAAGTGTTGGA-CAA---------T-----------------------TTGGGACCGG-AGCTGCTAAATTCAAGTACCACAGAAGAAA--GAA-AACAAAAATTAAAAACCAAATGGAGAAGGTCTGCCAGTTCTTCCGCAACAACTATGTGCTGGC | 
	| droTak1 | 
	scf7180000415238:298039-298221 + | 
	 | 
	AACTACAAGTATCGAGTCCT--GAATATAAGGCAAC-T-----GAACACAAAAACATAGTAGGTTTTC------------------------------AGATGAGTGTTGAA-CAA---------T-----------------------TTGGAAACGAACGCTGCTAAATTCAAGTAATACAGAGAAAAGC--AAAA---AAAATATAAAAGAAATGGAGAAGATCTGCCAGTTTTTCCGCAACAACTATGTGCTGGC | 
	| droEle1 | 
	scf7180000487408:683-869 + | 
	 | 
	AACTACAAATTTCGAATCCTTTACAAAATAAAAAGC-G-----ATTTCCTCAAACATAGTAAGTTTTC------------------------------AGAAGAGTGTTGAACCAT---------T-----------------------TTGGAACCAAAACCTGCTAAATTCAAGTTCTATCGAAGAATAT--AGAA--AAAATAAAAAGCGAAATGGAGAAGGTCTGCCAGTTTTTTCGCAACAACTATGTGCTGGC | 
	| droRho1 | 
	scf7180000778265:6858-7034 + | 
	 | 
	AACCACAAATTTCGAATCCT--GAAAATAAAGCTAT-T-----GG---CCAAAACTTAGTAAGTTTTC------------------------------GGAAGAGTGTTGAA-CAA---------T-----------------------TTGGAATCACAAGCTGCTAAATTAAAGTACTACAGAAAAA----TA-AA---TAAATAAAAGCGACATGGAGAAGGTCTGTCAGTTTTTCCGCAACAACTATGTGCTGGC | 
	| droFic1 | 
	scf7180000454066:3393553-3393728 + | 
	 | 
	AAAAACAGATCTCGAATCCT--GATAAATAAACT---------AATACCCAAAACAAGGTAAGTTTTC------------------------------AGAACATTGTTAAA-TAG---------T-----------------------TTCGAACCTAAACCTACTAAATTCAAGTACTACAGAAA---------AATAATAAATAAAAGCGACATGGAAAGGGTATGTCAGTTTTTCCGCAACAACTATGTGCTGGC | 
	| droKik1 | 
	scf7180000302366:381809-381955 - | 
	 | 
	GAGCAGAAAACATTTACCCC--------------------------CCAAAAAACATAGTGAGTTTTT------------------------------CAAAAACTGTTGTG-GATTTTGAATTTT-----------------------TCGGTT----TACTTGCTAAATTCTAGT----------------------------TTGAAAAAACATGGAGAAGATATGCCAATTCTTTCGCAACAACTACGTGCTGGC | 
	| droAna3 | 
	scaffold_13266:10975207-10975363 + | 
	 | 
	CAAAACACACA-----------------------TT-T-----TCCTCCTTAGACGTAGTAAGTTTTT------------------------------AAAATAATGTTACA-TGT---------T-----------------------TTGGAA----GACCTGCTAAATTTTTGTCTTGTAGGAAAA-AT--ATAA---AAAATAATAAAGCTATGGAGAAGGTCTGCCAGTTCTTTCGCAACAACTATGTGCTGGC | 
	| droBip1 | 
	scf7180000396547:1489972-1490133 - | 
	 | 
	AACCCA------------------AAACACAGATAT-T------TCTCCTTAGACATAGTAAGTTTTT------------------------------CCAATAATGTTACT-TGT---------T-----------------------TTGGAAT----ACCTGCTAAATTAGTGCCTTCTAGAAAAT-CC--ATAA--AAAATAACAAAAATTATGGAGAGGGTGTGCCAGTTCTTTCGCAACAACTATGTGCTGGC | 
	| dp5 | 
	3:2952637-2952799 - | 
	 | 
	AACAATATGAAAGCAGATTC--GAAAAGAACACTAC--GTTTG------------------AGTTTTCGATCAGACCGTTAACGCAGTATAATGTTTTGAAAAAT-------------------------------------------------------AGCTG-TAAATTAAGATAAAACA------------------AAATTTGTATCGTAATGGAGACGATTTTCAAGTTCTTCCGCAAAAATTATGTGCTGGC | 
	| droPer2 | 
	scaffold_2:3143031-3143193 - | 
	 | 
	AACAATATGAAAGCAGATTC--GAAAAGAACACTAC--GTTTG------------------AGTTTTCGATCAGACCGTTAACGCAGTATAATGTTTTGAAAAAT-------------------------------------------------------AGCTG-TAAATTAAGATAAAACA------------------AAATTTGTATCGTAATGGAGACGATTTTCAAGTTCTTCCGCAAAAATTATGTGCTGGC | 
	| droWil2 | 
	scf2_1100000004382:907014-907181 + | 
	 | 
	C------------------------------------------------GAAAACAGAGTAAGTTTAT------------------------------ATGTAACTGTAAGA-TATATTTAATAAATTGATGTATATATGTATATAGTTTTGGA--------TATGCAAATTTTATTACAGCAAAA-A--GTGTA-GATTTTAGTTGACTGAATTATGGAAAGAGTGTGCCAATTTTTTCGAACAAATTACATACTGGC | 
	| droVir3 | 
	scaffold_12875:1811976-1812019 + | 
	 | 
	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGACGCAGTTTGCCATTTTTTTCGCACCAATTATATATTGGC | 
	| droMoj3 | 
	scaffold_6496:13682812-13682855 - | 
	 | 
	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGAGGCAGTTTGCCATTTCTTTCGTACCAATTATATATTAGC | 
	| droGri2 | 
	scaffold_15112:3909953-3909996 + | 
	 | 
	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGAGACAGTTTGTCATTTCTTTCGCACCAATTACATATTGGC |