ID:

dsi_13762

 Coordinate:

2r:12328795-12328944 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-9.8 -9.4 -8.9

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GCACCCACAGCAGCCTGTCATCCATTTCCAGTGGCTCGTCCTCCTCGGGAGTGGGCGGCAGCGGCAGTGGGAGTGGAAGCGGGAGCGGCGTGGGCCAGAGCCAGCAGAGTTACTCCTCAACTCTGTCCCTGGATCGCTTCGGTTCGCCCCTGCACTCGCGCCAGACATCCGGCTCCTCCACGTCACTGGAGGTGGCATTGGCTGCTCCTGGCGCTGGCCAGGGTGATAATTACACCATGACGCCGCCCTC
************************************************************************************************************....................((((((..((..(((.((..........)).)))))..))))))...*************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 O001
Testis
 SRR902008
ovaries
 SRR902009
testis
 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 M053
female body
 M023
head
.................................................................................................................................................GCCCCGTCACTCGCGCCA....................................................................................... 18 2 4 20.00 80 73 0 6 0 0 0 0 0 1 0 0 0
..............................................................................................................................CCCTGTGTCGCTTCGATTCG........................................................................................................ 20 3 6 9.33 56 45 0 11 0 0 0 0 0 0 0 0 0
................................................................................................................................................AGCCCCGTCACTCGCGCCA....................................................................................... 19 3 10 4.80 48 42 0 4 0 0 0 0 0 1 1 0 0
..................................................................................................................................................CCCCTTCACTCGCGCCA....................................................................................... 17 1 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................CTCGCGCCAGACATCCGGCTC........................................................................... 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................TCCGGCTCCTCCACGTCACTG.............................................................. 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
............................................................................................................GTTACTCCTCAACTCTGTCC.......................................................................................................................... 20 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
............................................................GCGGCAGTGGGAGTGGCAGCGGGAGCG................................................................................................................................................................... 27 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................CTCCTCAACTCTGTCCCT........................................................................................................................ 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................AGTTACTCCTCAACTCTGTCC.......................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................TAGCCCCGTCACTCGCGCCA....................................................................................... 20 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................TACTCCTCAACTCTGTCCCTGG...................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................CTGTCCCTGGATCGCTTCGGTTCGCCCC.................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................CTGGATCGCTTCGGTTCGCCC..................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................CGGCAGCGGCAGTGGGAGTGG.............................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
..........CAGCCTGTCATCCATTTCCAG........................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...............................TGGCTCGTCCTCCTCGGGAGTGGGC.................................................................................................................................................................................................. 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................GCCCCTTCACTCGCGCCA....................................................................................... 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................AGCCCCTTCACTCGCGCCA....................................................................................... 19 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................TACTCCTCAACTCTGTCCCTGGA..................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.............................................CGAGAGTGGACGGGAGCGGC......................................................................................................................................................................................... 20 3 4 0.75 3 0 0 3 0 0 0 0 0 0 0 0 0
............................................TCGAGAGTGGACGGGAGCGGC......................................................................................................................................................................................... 21 3 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0
.................................................................................................................................................GCCCCTTCACTCGCGTCA....................................................................................... 18 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................CCCTTCACTCGCGCCA....................................................................................... 16 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................GCCCTGTCACTCGCGCCA....................................................................................... 18 3 20 0.30 6 6 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................GCCCCCTCACTCGCGCCA....................................................................................... 18 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................TCCCCGTCACTCGCGCCA....................................................................................... 18 3 20 0.25 5 5 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................GCTCCTTCACTCGCGCCA....................................................................................... 18 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................GTCGAGAGTGGACGGCAGCG........................................................................................................................................................................................... 20 3 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................CCTGTGTCGCTTCGATTCG........................................................................................................ 19 3 20 0.20 4 0 0 4 0 0 0 0 0 0 0 0 0
.................................................................................................................................................GCCCCGTCACTCGCGCC........................................................................................ 17 2 12 0.17 2 2 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................CCCCGTCACTCGCGCCA....................................................................................... 17 2 20 0.15 3 0 0 3 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................TTACAGCATGACGCCGGCT.. 19 3 7 0.14 1 0 0 0 0 0 0 0 0 1 0 0 0
.....................................GTCCTCCTCGGGAGG...................................................................................................................................................................................................... 15 1 9 0.11 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................CCCCTCACTCGCGCCA....................................................................................... 16 2 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0
................................GGCTCGTCCTCCCAGGGT........................................................................................................................................................................................................ 18 3 20 0.10 2 0 0 0 0 0 0 0 0 0 0 2 0
............................................TCGAGAGTGGACGGGAGCG........................................................................................................................................................................................... 19 3 20 0.10 2 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................CGGGAGCGGCGGGGGC........................................................................................................................................................... 16 1 11 0.09 1 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................TCGCTTCGATTCGTCCCT................................................................................................... 18 2 11 0.09 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................GCCCCGCCACTCGCGCCA....................................................................................... 18 2 11 0.09 1 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................AGCCCCCTCACTCGCGCCA....................................................................................... 19 3 14 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................CCCTGTTTCGCTTCGATTCG........................................................................................................ 20 3 19 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................CCCCGTCACTCGCGCC........................................................................................ 16 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0
.................................................................................................................................................GCCCCGTCACTCGCGC......................................................................................... 16 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................GTCGCTCGTCCTCCGTGGG......................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1
...............................................................................CGGGAGCGGCGGGGG............................................................................................................................................................ 15 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0

Anti-sense strand reads

CGTGGGTGTCGTCGGACAGTAGGTAAAGGTCACCGAGCAGGAGGAGCCCTCACCCGCCGTCGCCGTCACCCTCACCTTCGCCCTCGCCGCACCCGGTCTCGGTCGTCTCAATGAGGAGTTGAGACAGGGACCTAGCGAAGCCAAGCGGGGACGTGAGCGCGGTCTGTAGGCCGAGGAGGTGCAGTGACCTCCACCGTAACCGACGAGGACCGCGACCGGTCCCACTATTAATGTGGTACTGCGGCGGGAG
***************************************************************************....................((((((..((..(((.((..........)).)))))..))))))...************************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
.....................................................................................GCCGCACCCGGTCTCGGT................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0
....................................................................................CGCCGCACCCGGTCTCGG.................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................................TGAGGAGTTTAGACAGAGACT...................................................................................................................... 21 3 2 0.50 1 0 1 0 0 0 0 0
...........................................................................................................................ACAGGGACCTAACGAA............................................................................................................... 16 1 3 0.33 1 0 0 1 0 0 0 0
...........................GGTCACCGAGATGGAGGTGC........................................................................................................................................................................................................... 20 3 11 0.27 3 0 0 0 3 0 0 0
..........................................................................................................................................AGCCAAGCGGAGACG................................................................................................. 15 1 11 0.18 2 0 0 2 0 0 0 0
........................................................................................GCTCCGGGTCTCGGTAGTCTC............................................................................................................................................. 21 3 6 0.17 1 0 0 0 0 1 0 0
................................................................................................................GAGGAGTTGAGACAGACACT...................................................................................................................... 20 3 9 0.11 1 0 1 0 0 0 0 0
..................................................................................................................................CCAAGAGAAGACAAGCGGGG.................................................................................................... 20 3 9 0.11 1 0 0 0 0 1 0 0
.........................................................................................................................AGACAGGGACATAGCG................................................................................................................. 16 1 10 0.10 1 0 0 0 0 0 0 1
.............................................................................................................................................................................................TCCAACGTTACCGTCGAGGA......................................... 20 3 11 0.09 1 0 1 0 0 0 0 0
..............................................................................................................ATGAGAAGTTGAGAC............................................................................................................................. 15 1 11 0.09 1 0 0 0 0 0 1 0
.........................AAGGTCACCGACTAGTAGGA............................................................................................................................................................................................................. 20 3 14 0.07 1 0 0 0 0 0 1 0
..................................................................................................................................................................TCTGTCGGCCGAAGCGGTG..................................................................... 19 3 15 0.07 1 0 0 0 1 0 0 0
.............................................................................................................AATGAGGAGTTGAAA.............................................................................................................................. 15 1 16 0.06 1 0 0 0 0 1 0 0
.............................TCACCGAGATGGAGGTGCC.......................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:12328745-12328994 - dsi_13762 GCACCCACAGCAGCCTGTCATCCATTTCCAGTGGCTCGT------------------------------------------------CCTCCTCGGGAGTGGGCGGCAGC------GGCAGTGGGAGTG------------------------------GAAGCGGGAGCGGCGTGGGC---CAGAGCCAGCAGAGTTACTCCTCAACTCTGTCCCTGGATCG------------------CTTCGGT---------------TCGCCCCTGCACTCGCGCCAGACAT--CCG------GCTCCTCCACGTCACTGGAGGTGG---CATTGGCTGC------------------------------TCCTGGCGCTGGCCAGGGTGATAATTACACCATGAC----------GCCGCCCTC
droSec2 scaffold_1:9156202-9156451 - GCACCCACAGCAGCCTGTCATCCATTTCCAGTGGCTCTT------------------------------------------------CCTCCTCCGGAGTGGGCGGCAGC------GGCAGTGGGAGTG------------------------------GCAGCGGTAGCGGCGTGGGC---CAGAGCCAGCAGAGTTACTCCTCAACTCTGTCCCTGGATCG------------------CTTCGGT---------------TCGCCCCTGCACTCGCGCCAGACAT--CCG------GCTCCTCCACGTCACTGGAGGTGG---CATTGGCTGC------------------------------TTCTGGCGCTGGCCAGGGTGATAATTACATCATGAC----------GCCGCCCTC
dm3 chr2R:11662612-11662861 - GCACCCACAGCAGCCTGTCATCCATTTCCAGTGGCTCCT------------------------------------------------CCTCCTCCGGAGTTGGCGGCAGC------GGCAGTGGGAGTG------------------------------GCAGCGGTAGCGGCGTTGGC---CAGAGCCAGCAGAGTTACTCCTCCACTCTGTCCCTAGATCG------------------CTTTGGT---------------TCGCCCCTGCACTCGCGCCAGACAT--CCG------GCTCCTCCACGTCACTGGAGGTGG---CATTGGCTGC------------------------------TCCTGGCGCTGGCCAGGGTGATAATTACACCATGAC----------GCCGCCCTC
droEre2 scaffold_4845:14199988-14200249 + der_1137 GCACCCACAGCAGCCTGTCATCCATTTCCAGCGGCTCCT------------------------------------------------CCTCCTCCGGAGTGGGCGGCAGC------GGCAGTGGGAGTGGCAGTGGCAGCG------------------GCAGCGGCAGCGGCGTGGGC---CAGAGCCAGCAGAGCTACTCCTCCACTCTGTCCCTGGATCG------------------CTTTGGT---------------TCGCCCCTGCACTCGCGCCAGACAT--CCG------GCTCCTCCACGTCACTGGAGGTGG---CTTTGGCTGC------------------------------TCCTGGCGCTGGCCAGGGCGATAATTACACCATGAC----------GCCGCCCTC
droYak3 2R:17324261-17324510 + GCACCCACAGCAGCCTGTCATCCATTTCCAGTGGCTCCT------------------------------------------------CCTCCTCCGGAGTGGGCGGCAGC------GGCAGCGGCAGTG------------------------------GGAGTGGCAGCGGCGTGGGC---CAGAGCCAGCAGAGCTACTCCTCCACTCTGTCCCTGGATCG------------------CTTTGGT---------------TCGCCCCTGCACTCGCGCCAGACAT--CCG------GCTCCTCCACGTCACTGGAGGTGG---CTTTGGCTGC------------------------------TCCTGGCGCTGGCCAGGGCGATAATTACACCATGAC----------GCCGCCCTC
droEug1 scf7180000409672:561646-561895 - GCACCCACAGCAGCCTGTCATCCATTTCCAGTGGTTCCT------------------------------------------------CCTCGTCCGGAGTGGGCGGCAGC------GGCAGTGGGAGTG------------------------------GCAGCGGGAGTGGTGTTGGA---CAGAGTCAGCAAAGCTACTCATCCACCCTATCCCTAGACCG------------------CTTCGGT---------------TCGCCCATGCATTCGCGCCAGACAT--CCG------GCTCCTCCACGTCACTGGAGGCGG---CTTTGGCTGG------------------------------TCCGGCCGCCGGTCAGGGCGATAATTACACAATGCA----------GCCGCCCTC
droBia1 scf7180000302292:3995835-3996078 + GCACCCACAGCAGCCTGTCATCCATCTCTAGTGGCTCCT------------------------------------------------CCTCCTCCGGGGTGGGCGGCAGC------GGCAGTGGGAGTG------------------------------GC------AGTGGCGTGGGC---CAGAGCCAGCAGAGCTACTCGTCCACCCTGTCCCTGGACCG------------------CTTTGGC---------------TCGCCACTGCACTCGCGCCAGACAT--CCG------GCTCCTCCACGTCGCTGGAAGTGT---CGCTGGCTGC------------------------------TCCGGCCGCTGGTCAGGGCGATAATTACACAATGAC----------GCCGCCCTC
droTak1 scf7180000415241:17356-17602 + GCACCCACAGCAGCCTGTCGTCCATTTCCAGTGGTTCCT------------------------------------------------CCTCCTCCGGAGTGGGCGGCAGC------GGCAGTGGGAGTG------------------------------GCAGTGGGAGTGGCGTGGGC---CAGAGCCACCAGAGCTACTCATCCACACTATCGCTGGACCG------------------CTTCGGG---------------TCGCCCCTGCACTCGCGCCAGACAT--CCG------GCTCCTCCACGTCACTGGAGGTGG---------TTGC------------------------------TCCTGCCGCCGGTCAGGGTGATAATTACACAATGAC-------AGCGCCACCCTC
droEle1 scf7180000491107:642339-642594 - GCACCCACAGCAGCCTGTCATCCATTTCCAGTGGCTCCT------------------------------------------------CCTCCTCCGGAGTTGGCGGCAGC------GGCAGTGGGAGTG------------------------------GCAGTGGCAGTGGCGTGGGC---CAGAGCCAGCAGAGCTACTCCTCCACGCTGTCGCTGGACCG------------------CTTCGGT---------------TCGCCCCAGCACTCGCGGCAGACAT--CCG------CCTCCTCCACGTCGCTGGAGGTGG---------CTGCTGTT---------GTCGC------------ATCCCCCGCTGGTCAGGCTGATAATTACACCATGGC-------GACCCCGCCCTC
droRho1 scf7180000779911:449430-449670 + GCACCCACAGCAGCCTGTCATCCATTTCCAGTGGCTCCT------------------------------------------------CCTCCTCCGGAGTGGGCGGCAGC------GGCAGTGGGAGTG------------------------------GC------AGTGGCGTGGGC---CAGAGCCAGCAGAGCTACTCCTCCACGCTGTCCCTGGACCG------------------CTTCGGA---------------TCGCCCCTCCACTCGCGCCAGACAT--CCG------CCTCCTCTACCTCGCTGGAGGTGG---CTGTGGCCGG------------------------------GCCTCCCGCTGGTCAGGGTGATAATTACACAATG-------------CCACCCTC
droFic1 scf7180000453809:157386-157698 - GCACCCACAGCAGCCTGTCGTCCATCTCCAGCGGATCCT------------------------------------------------CCTCCTCCGGAGTGGGCGGCAGT------GGCAGTGGGAGTGGCAGTGGCAGCGGCAGCGGAATGGGATTGGGAATGGGGAGTGGAGTGAGCCAGCAGAGCCAACAGAGCTACTCATCCACGCTATCGCTCGACCG------------------CTTCGGT---------------TCGCCTTTGCATTCGCGGCAGACAT--CCG------CTTCGTCCACGTCGCTGGAGGTGGGTC---------CATTGCCACCCGCTCCCCTGCCACCTGCCACTGCCACCGCCGGTCAGGTTGATAATTACACAATGCCCCAT----GCCCCGCCCTC
droKik1 scf7180000302682:1837473-1837722 - GCACGCACAGCAGCCTGTCGTCCATTTCGAGTGGCTCCT------------------------------------------------CCTCCTCGGGAGTGGGCGGCAGT------GGG------------------------------------------AGCGGTAGTGGTGTGGGC---CAGAGCCAGCAAAGCTACTGCTCTACGCTGTCCCTGGATCG------------------TTTTGGC---------------TCGCCCCAGCACTCCCGCCAGACAT--CCG------CCTCCTCCACATCACTGGAGGTGGT---------TGCTGCT---------CCGACTACCGCTGCTGCTGTGGCTCCTGGACAGGGCGATAATTACACAATG-------------CCACCATC
droAna3 scaffold_13266:12537729-12537988 + GCACCCACAGCAGCCTGTCTTCCATCTCAACTGGCTCCT------------------------------------------------CATCCTCCGGGGTGGGCGGCAGC------GGCAGCGGCAGTGGGTGTGGCAGCG------------------GCAGTGCCAGTGGCGTCGGGCCGCAGAGCCAGCAGAGCTACTCCTCCACCTTGTCGCTGGACAG------------------GTTCAGC---------------TCTCCGCTGCACTCGCGCCAGACAT--CCT------CTTCCTCCACGTCGCTGGAGGTGGGAG---------GACTGGCACC---------------------CTCT--------CCTCAGTGTTTCTCACGCGCGCAC----------ATCCCCCAT
droBip1 scf7180000396372:37691-37921 + GCACCCACAGCAGTCTGTCCTCCATCTCAACTGGCTCCT------------------------------------------------CCTCCTCCGGAGTGGGCGGCAGC------GGCAGCGGCAGTGGATGTGGCAGCG------------------GCAGTGCCAGTGGCGTCGGCCCGCAGAGCCAGCAGAGCTACTCCTCCACCTTGTCGCTGGACAG------------------GTTCGGG---------------TCTCCGCTGCACTCGCGTCAGACGT--CCT------CGTCCTCCACATCGCTGGAGGCGGGAG---------GGCTG-------------------------------------GC---------------------AC----------CCTCTCCTC
dp5 3:19522370-19522622 + GCACCCACAGCAGCCTCTCGTCCATCTCGAGTGGCTCCT------------------------------------------------CGTCCTCCGGCGTGGGCGGGAGC------GGGAGCGC------------------------------------------CAGTGGGGCGGGC---CATAGCCAGCAAAGC---TCCTCGACGCTCTCCCTGGACCTGGACCGGGACCGCTACGCCTACGGT---------------TCGCCCATGCACTCGCGCCAGACCT--CGG------GCTCGTCCACGTCGCTGGACGTGAGTGCGGTGGGTGG------------------------------CAGTGGTGGTGTTCAGGCCGATACTTACACAATG-------------CCGCTCTC
droPer2 scaffold_13:1044371-1044616 - GCAGCAACAGCAGGAGGAGGAACAACAACAGCAGCAGGA------------------------------------------------GGAGCATCATCACCAGCACCTGCAGCAGCAGCAGCAGCAGCA------------------------------GC------AGCATCAGCAGC---CGGATCCGGGGGCTCTAATCC-------TGCCGCAGG-ACA------------------ATATGCC--ACACAGCAGCAGTTC--------------GCCGGGCACCAGCA------GCTCTCCGCCGCCGCTGC----AG---CAGCAGCAGC------------------------------AGCACACGCTCACCCACACCACCCT--CACCATGCC-CATGCCCATGCCGCCCAC
droWil2 scf2_1100000004512:923633-923912 + GAACCCACAGTAGCCTCTCATCAATTTCAAACGGCTCATCAGCATCATCCACAAACTCCGTGTCCTCTTTGGCGTCGTCGTCGTCGTCGTCGTCCGGAGTGGGGGGCAGT------GGGAGTGTGAGTG------------------------------CC------------------------------------------ATCACTTTATCGTTGGAGCA------------------TTTTGGTTCGGCCAATTGCATTTCGCCCTTGCATTCACGGCAAGCAT--CTGGCAGTGGCTCGTCTGCATCGTTGGAGACTGG--CCATAGTCAA------------------------------A-CTGGCCAGGGACAGGCTGATAATTATACAATGCC----------ACCAACACC
droVir3 scaffold_12823:1403608-1403837 + ACAC-----GCAGCCTCTCATCAATTTCGAGCGGCTCCTCGCAAACAT---------------------------------------CCTCGTCGGGTGTGGGCGGCTGT------GCTCAGTTGAGCC------------------------------CCAG-CCTGGTGGCAT---C---CAG--------------CGCCTCGACGCTGTCCCTGGACAT------------------GGAGCAC---------------TCGCCGCAGCATTCGCGCCAAGCCT--CTG------GCTCCTGCACGTCGCTGGATGTGGG---------CAGTGTT------------------------------GTGCAGTGTCCCGTTGATAATTATACAATGTC----------AATGCCATC
droMoj3 scaffold_6496:497533-497715 - ----------CAGCCTCTCATCAATTTCGAGCGGCTCCT------------------------------------------------CCTCGTCAGGTCTGGGTGGCTGC---------------------------------------------------------AGTGCCGCCGCT---CT---------CAGCCCCAGCTCCACACTCTCGCTGGACAT------------------GGAGCAG---------------TCGCCCATGCACTCGCGCCAGGCAT--CGG------GCTCCAGCACTTCGCTGGATGTGGC---------TGC------------------------------T---------------GTTGATAATTATATA----------------CCAGCCGC
droGri2 scaffold_15245:5842821-5843055 - GCACAAACAGCAGTCTCTCATCAATTTCGAGTGGCTCATCGCATACAT---------------------------------------CGTCGTCGGGTGTGGGTGGCAGC------GCTGCACTGAGCC----------CG------------------ACAAGCCTGGTGGCAT---C---CAG--------------CGCGTCGACTCTCTCGCTGGACAC------------------GGAAAAC---------------TCGCCGATGCATTCGCGCCAAGCCT--CTG------GCTCTTGCACATCGCTGGATGTGGG---------CGTT---------------------------------GCTCAGGGTCCGTTTGATAATTATACACTGTC----------AATGCCATC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GCACCCACAGCAGCCTGTCATCCATTTCCAGTGGCTCGT------------------------------------------------CCTCCTCGGGAGTGGGCGGCAGC------GGCAGTGGGAGTG------------------------------GAAGCGGGAGCGGCGTGGGC---CAGAGCCAGCAGAGTTACTCCTCAACTCTGTCCCTGGATCG------------------CTTCGGT---------------TCGCCCCTGCACTCGCGCCAGACAT--CCG------GCTCCTCCACGTCACTGGAGGTGG---CATTGGCTGC------------------------------TCCTGGCGCTGGCCAGGGTGATAATTACACCATGAC----------GCCGCCCTCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................................................................................................................................................................................................................................................................................CTCGCGCCAGACAT--CCG------GCTC......................................................................................................................2112.00200200000000000000
...............................................................................................................................................................................................................................................................................................T--CCG------GCTCCTCCACGTCACTG.........................................................................................................2112.00200200000000000000
...................................................................................................................................................................................................GTTACTCCTCAACTCTGTCC..............................................................................................................................................................................................................2012.00200200000000000000
.......................................................................................................................................................................................................CTCCTCAACTCTGTCCCT............................................................................................................................................................................................................1811.00100100000000000000
..................................................................................................................................................................................................AGTTACTCCTCAACTCTGTCC..............................................................................................................................................................................................................2111.00100100000000000000
.....................................................................................................................................................................................................TACTCCTCAACTCTGTCCCTGG..........................................................................................................................................................................................................2211.00100100000000000000
.................................................................................................................................................................................................................CTGTCCCTGGATCG------------------CTTCGGT---------------TCGCCCC.......................................................................................................................................................2811.00100100000000000000
.......................................................................................................................................................................................................................CTGGATCG------------------CTTCGGT---------------TCGCCC........................................................................................................................................................2111.00100100000000000000
.......................................................................................................CGGCAGC------GGCAGTGGGAGTG------------------------------G.....................................................................................................................................................................................................................................................................2111.00100000000000001000
..........CAGCCTGTCATCCATTTCCAG......................................................................................................................................................................................................................................................................................................................................................................................................2111.00100001000000000000
...............................TGGCTCGT------------------------------------------------CCTCCTCGGGAGTGGGC.............................................................................................................................................................................................................................................................................................................................2511.00100000000000100000
.....................................................................................................................................................................................................TACTCCTCAACTCTGTCCCTGGA.........................................................................................................................................................................................................2311.00100100000000000000
.....................................GT------------------------------------------------CCTCCTCGGGAGG.................................................................................................................................................................................................................................................................................................................................1590.11100000000100000000
droSec2
GCACCCACAGCAGCCTGTCATCCATTTCCAGTGGCTCTT------------------------------------------------CCTCCTCCGGAGTGGGCGGCAGC------GGCAGTGGGAGTG------------------------------GCAGCGGTAGCGGCGTGGGC---CAGAGCCAGCAGAGTTACTCCTCAACTCTGTCCCTGGATCG------------------CTTCGGT---------------TCGCCCCTGCACTCGCGCCAGACAT--CCG------GCTCCTCCACGTCACTGGAGGTGG---CATTGGCTGC------------------------------TTCTGGCGCTGGCCAGGGTGATAATTACATCATGAC----------GCCGCCCTCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................................................................................................................................................................................................................................................CTTCGGT---------------TCGCCCCTGCACT.................................................................................................................................................2011.0010010
....................................................................................................................................................................................................................................................................................................................................................................................................AATTACATCATGAC----------GCCG.....1811.0010010
.............................................................................................................................................................................GTGGGC---CAGAGCCAGCAGAGT................................................................................................................................................................................................................................2111.0010010
.............................................................................................................................................................................GTGGGC---CAGAGCCAGCAGA..................................................................................................................................................................................................................................1911.0010010
................................................................................................GAGTGGGCGGCAGC------GGCAGTGGG........................................................................................................................................................................................................................................................................................................2311.0010010
.........................................................................................................GCAGC------GGCAGTGGGAGTG------------------------------GC....................................................................................................................................................................................................................................................................2011.0010010
....................................CTT------------------------------------------------CCTCCTCCGGAGTGGGC.............................................................................................................................................................................................................................................................................................................................2011.0010010
.........................................................................................................................................................................................................................................................................................................................................TGGCTGC------------------------------TTCTGGCGCTGGCCT........................................2211.0011000
..........................................................................................................................................................................................................................GATCG------------------CTTCGGT---------------TCGCCCCTGCACT.................................................................................................................................................2511.0010010
.......................................................................................................................................................................................................................................................................................................................CACTGGAGGTGG---CATTGGCTGC------------------------------TTCTG..................................................2711.0011000
..........................................................................................................................................................................GGCGTGGGC---CAGAGCCAGCAGAGT................................................................................................................................................................................................................................2411.0010010
...........................................................................................................................GGAGTG------------------------------GCAGCGGTAGCGGC........................................................................................................................................................................................................................................................2011.0011000
dm3
GCACCCACAGCAGCCTGTCATCCATTTCCAGTGGCTCCT------------------------------------------------CCTCCTCCGGAGTTGGCGGCAGC------GGCAGTGGGAGTG------------------------------GCAGCGGTAGCGGCGTTGGC---CAGAGCCAGCAGAGTTACTCCTCCACTCTGTCCCTAGATCG------------------CTTTGGT---------------TCGCCCCTGCACTCGCGCCAGACAT--CCG------GCTCCTCCACGTCACTGGAGGTGG---CATTGGCTGC------------------------------TCCTGGCGCTGGCCAGGGTGATAATTACACCATGAC----------GCCGCCCTCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................................CT------------------------------------------------CCTCCTCCGGAGTTGGCGGC..........................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
.................................................................................................................................................................................................................................................................................................................CCACGTCACTGGAGGTGG---C..............................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................CACTGGAGGTGG---CATTGGC........................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000010000
................................................................................................................................................................................................................................................................................................................TCCACGTCACTGGAGGTGG---CA.............................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................T------------------------------------------------CCTCCTCCGGAGTTGGCGGC..........................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................CAGC------GGCAGTGGGAGTG------------------------------GC....................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................CT------------------------------------------------CCTCCTCCGGAGTTGGCGG...........................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................CAGTGGGAGTG------------------------------GCAGCGGTAG............................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
...........................................................................................................................................................................................................TCCACTCTGTCCCTAGATCG------------------CTTTGGT---------------..............................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............TGTCATCCATTTCCAGTGGC..................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................AGCGGCGTTGGC---CAGAGCCAGC.....................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.......................................................................................................................AGTGGGAGTG------------------------------GCAGCGGT..............................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
...............................................................................................GGAGTTGGCGGCAGC------GGC..............................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
................................................................................................................................G------------------------------GCAGCGGTAGCGGCGTTGG...................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...........AGCCTGTCATCCATTTCCA.......................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................GTTGGCGGCAGC------GGCAGT...........................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................TCCTCCACGTCACTGGAGGTGG---CATTGGCT.......................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................CAGCGGTAGCGGCGTTGGA---...............................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
................................................................................................................................................................................................................................................................................................................TCCACGTCACTGGAGGTGG---CATTGGC........................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................GAGTG------------------------------GCAGCGGTAGCGGCGTTGGC---CAG............................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.......................................................................................................................................................................................AGAGCCAGCAGAGTTACTCC..........................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
......ACAGCAGCCTGTCATCCAT............................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.......................................................................................................................................................................................................................................................................................................................CACTGGAGGTGG---CATTGGCTG......................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
..................................................................................................GTTGGCGGCAGC------GGCAGTGGGAGT.....................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.................................................................................................................................................................AGCGGTAGCGGCGTTGGC---C..............................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................G------------------------------GCAGCGGTAGCGGCGTTGGA---...............................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
........................................................................................................................................................................GCGGCGTTGGC---CAGAGCCA.......................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...............................................................................................................................TG------------------------------GCAGCGGTAGCGGCGTTGGC---C..............................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..............................................................................................................................................................................................................................G------------------CTTTGGT---------------TCGCCCCTGCACTCGCGC............................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................CCTCCTCCGGAGTTGGCGGCAGC------.................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................G------GCTCCTCCACGTCACTGGA.......................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............................GTGGCTCCT------------------------------------------------CCTCCTCCGGA...................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................TCACTGGAGGTGG---CATTGGCT.......................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................TCCTCCGGAGTTGGCGGCAGC------G................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................CCTCCGGAGTTGGCGGCAGC------GGCA.............................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
......................................................................................................................................................................................................................................................................................CGCCAGACAT--CCG------GCTCCTCCACGTCAC...........................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.....................................CT------------------------------------------------CCTCCTCCGGAGTTGGCGGCA.........................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................CCACTCTGTCCCTAGATCG------------------C...................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
........................................................................................CTCCTCCGGAGTTGGCGGC..........................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
................................................................................................................................................................................GGC---CAGAGCCAGCAGAGTTACTCCTCCA......................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...............................................................................................................................................................................................................................................................................................................................................................................CCTGGCGCTGGCCAGGC.....................................1720.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................AGTGGGAGTG------------------------------GCAGCGGG..............................................................................................................................................................................................................................................................18100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
droEre2
GCACCCACAGCAGCCTGTCATCCATTTCCAGCGGCTCCT------------------------------------------------CCTCCTCCGGAGTGGGCGGCAGC------GGCAGTGGGAGTGGCAGTGGCAGCG------------------GCAGCGGCAGCGGCGTGGGC---CAGAGCCAGCAGAGCTACTCCTCCACTCTGTCCCTGGATCG------------------CTTTGGT---------------TCGCCCCTGCACTCGCGCCAGACAT--CCG------GCTCCTCCACGTCACTGGAGGTGG---CTTTGGCTGC------------------------------TCCTGGCGCTGGCCAGGGCGATAATTACACCATGAC----------GCCGCCCTCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.............................................................................................................................................................................................................................................................................CTGCACTCGCGCCAGACAT--CCG------GCTC......................................................................................................................2611.0011000000
...............................................................................................................................................................GCAGCGGCAGCGGCGTGGGC---CA.............................................................................................................................................................................................................................................2211.0011000000
................GTCATCCATTTCCAGCGGCTCCT------------------------------------------------CCTC..........................................................................................................................................................................................................................................................................................................................................2711.0011000000
..................................................................................................................................................................................................................................................................................CTCGCGCCAGACAT--CCG------GCTCCTC...................................................................................................................2411.0010100000
.........................................................................................................................................AGCG------------------GCAGCGGCAGCGGCGTGGG...................................................................................................................................................................................................................................................2311.0010000010
.......................................................................................................................................................................................................................................................................................................................CACTGGAGGTGG---CTTTGG.........................................................................................1811.0011000000
....................................................................................................................................................................................................................TCCCTGGATCG------------------CTTTGGT---------------TCGCCCC.......................................................................................................................................................2511.0011000000
...........................................................................................................................................CG------------------GCAGCGGCAGCGGCGTGGGC---...............................................................................................................................................................................................................................................2211.0010100000
.............................................................................................................................AGTGGCAGTGGCAGCG------------------GCAGCGGC..............................................................................................................................................................................................................................................................2460.5030000030
........................................................................................................................GTGGGAGTGGCAGTGGCAGC.........................................................................................................................................................................................................................................................................................2030.3310000100
..............................................................................................................................GTGGCAGTGGCAGCG------------------GCAGCGGC..............................................................................................................................................................................................................................................................2370.2921000100
.......................................................................................................................AGTGGGAGTGGCAGTGGC............................................................................................................................................................................................................................................................................................1860.1710000100
................................................................................................................................GGCAGTGGCAGCG------------------GCAGCGGC..............................................................................................................................................................................................................................................................21130.1520000110
................................................................................................................................GGCAGTGGCAGCG------------------GCAGC.................................................................................................................................................................................................................................................................18200.1532000100
..............................................................................................................................GTGGCAGTGGCAGCG------------------GCAGC.................................................................................................................................................................................................................................................................2090.1110000100
..............................................................................................................................GTGGCAGTGGCAGCG------------------GCAGCG................................................................................................................................................................................................................................................................2190.1110000010
.............................................................................................................................AGTGGCAGTGGCAGCG------------------GC....................................................................................................................................................................................................................................................................18140.0710000010
.................................................................................................................................GCAGTGGCAGCG------------------GCAGCGGC..............................................................................................................................................................................................................................................................20160.0610000100
droYak3
GCACCCACAGCAGCCTGTCATCCATTTCCAGTGGCTCCT------------------------------------------------CCTCCTCCGGAGTGGGCGGCAGC------GGCAGCGGCAGTG------------------------------GGAGTGGCAGCGGCGTGGGC---CAGAGCCAGCAGAGCTACTCCTCCACTCTGTCCCTGGATCG------------------CTTTGGT---------------TCGCCCCTGCACTCGCGCCAGACAT--CCG------GCTCCTCCACGTCACTGGAGGTGG---CTTTGGCTGC------------------------------TCCTGGCGCTGGCCAGGGCGATAATTACACCATGAC----------GCCGCCCTCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................ATTTCCAGTGGCTCCT------------------------------------------------CCTCCTCCGGAGT.................................................................................................................................................................................................................................................................................................................................2912.00200000000002
.................................................................................................................................................................................................................................................................................................................................GG---CTTTGGCTGC------------------------------TCCTGGCGCTGGCCA........................................2711.00101000000000
.........................................................................................................GCAGC------GGCAGCGGCAGTG------------------------------GGA...................................................................................................................................................................................................................................................................2111.00100000010000
..............................................................................................................................................................................................................................................................................................................................GGTGG---CTTTGGCTGC------------------------------TCCTGGC................................................2211.00100100000000
........................................................................................CTCCTCCGGAGTGGGCGGCAGC------.................................................................................................................................................................................................................................................................................................................2211.00100100000000
...............................................................................................................................................................................................................................................................................GCACTCGCGCCAGACAT--CCG------GCTCCTC...................................................................................................................2711.00101000000000
...................................................................................................................................................................................................GCTACTCCTCCACTCTGTCCC.............................................................................................................................................................................................................2111.00100100000000
.............................................................................................................................................................................GTGGGC---CAGAGCCAGCAGAGC................................................................................................................................................................................................................................2111.00100100000000
................................................................................................................................................................................GGC---CAGAGCCAGCAGAGCTACT............................................................................................................................................................................................................................2211.00100000010000
.......................................................................................................................................................................................................................................................................................................................................TTTGGCTGC------------------------------TCCTGGCGCTGGCCAGG......................................2611.00100100000000
..........................................................................................................................................................................................................CTCCACTCTGTCCCTGGATCG------------------C...................................................................................................................................................................................2211.00101000000000
........................................................................................CTCCTCCGGAGTGGGCGGCA.........................................................................................................................................................................................................................................................................................................................2011.00101000000000
droEug1
GCACCCACAGCAGCCTGTCATCCATTTCCAGTGGTTCCT------------------------------------------------CCTCGTCCGGAGTGGGCGGCAGC------GGCAGTGGGAGTG------------------------------GCAGCGGGAGTGGTGTTGGA---CAGAGTCAGCAAAGCTACTCATCCACCCTATCCCTAGACCG------------------CTTCGGT---------------TCGCCCATGCATTCGCGCCAGACAT--CCG------GCTCCTCCACGTCACTGGAGGCGG---CTTTGGCTGG------------------------------TCCGGCCGCCGGTCAGGGCGATAATTACACAATGCA----------GCCGCCCTCSizeHit CountTotal NormTotal
No Reads
droBia1
GCACCCACAGCAGCCTGTCATCCATCTCTAGTGGCTCCT------------------------------------------------CCTCCTCCGGGGTGGGCGGCAGC------GGCAGTGGGAGTG------------------------------GC------AGTGGCGTGGGC---CAGAGCCAGCAGAGCTACTCGTCCACCCTGTCCCTGGACCG------------------CTTTGGC---------------TCGCCACTGCACTCGCGCCAGACAT--CCG------GCTCCTCCACGTCGCTGGAAGTGT---CGCTGGCTGC------------------------------TCCGGCCGCTGGTCAGGGCGATAATTACACAATGAC----------GCCGCCCTCSizeHit CountTotal NormTotal
No Reads
droTak1
GCACCCACAGCAGCCTGTCGTCCATTTCCAGTGGTTCCT------------------------------------------------CCTCCTCCGGAGTGGGCGGCAGC------GGCAGTGGGAGTG------------------------------GCAGTGGGAGTGGCGTGGGC---CAGAGCCACCAGAGCTACTCATCCACACTATCGCTGGACCG------------------CTTCGGG---------------TCGCCCCTGCACTCGCGCCAGACAT--CCG------GCTCCTCCACGTCACTGGAGGTGG---------TTGC------------------------------TCCTGCCGCCGGTCAGGGTGATAATTACACAATGAC-------AGCGCCACCCTCSizeHit CountTotal NormTotal
No Reads
droEle1
GCACCCACAGCAGCCTGTCATCCATTTCCAGTGGCTCCT------------------------------------------------CCTCCTCCGGAGTTGGCGGCAGC------GGCAGTGGGAGTG------------------------------GCAGTGGCAGTGGCGTGGGC---CAGAGCCAGCAGAGCTACTCCTCCACGCTGTCGCTGGACCG------------------CTTCGGT---------------TCGCCCCAGCACTCGCGGCAGACAT--CCG------CCTCCTCCACGTCGCTGGAGGTGG---------CTGCTGTT---------GTCGC------------ATCCCCCGCTGGTCAGGCTGATAATTACACCATGGC-------GACCCCGCCCTCSizeHit CountTotal NormTotal
No Reads
droRho1
GCACCCACAGCAGCCTGTCATCCATTTCCAGTGGCTCCT------------------------------------------------CCTCCTCCGGAGTGGGCGGCAGC------GGCAGTGGGAGTG------------------------------GC------AGTGGCGTGGGC---CAGAGCCAGCAGAGCTACTCCTCCACGCTGTCCCTGGACCG------------------CTTCGGA---------------TCGCCCCTCCACTCGCGCCAGACAT--CCG------CCTCCTCTACCTCGCTGGAGGTGG---CTGTGGCCGG------------------------------GCCTCCCGCTGGTCAGGGTGATAATTACACAATG-------------CCACCCTCSizeHit CountTotal NormTotal
No Reads
droFic1
GCACCCACAGCAGCCTGTCGTCCATCTCCAGCGGATCCT------------------------------------------------CCTCCTCCGGAGTGGGCGGCAGT------GGCAGTGGGAGTGGCAGTGGCAGCGGCAGCGGAATGGGATTGGGAATGGGGAGTGGAGTGAGCCAGCAGAGCCAACAGAGCTACTCATCCACGCTATCGCTCGACCG------------------CTTCGGT---------------TCGCCTTTGCATTCGCGGCAGACAT--CCG------CTTCGTCCACGTCGCTGGAGGTGGGTC---------CATTGCCACCCGCTCCCCTGCCACCTGCCACTGCCACCGCCGGTCAGGTTGATAATTACACAATGCCCCAT----GCCCCGCCCTCSizeHit CountTotal NormTotal
No Reads
droKik1
GCACGCACAGCAGCCTGTCGTCCATTTCGAGTGGCTCCT------------------------------------------------CCTCCTCGGGAGTGGGCGGCAGT------GGG------------------------------------------AGCGGTAGTGGTGTGGGC---CAGAGCCAGCAAAGCTACTGCTCTACGCTGTCCCTGGATCG------------------TTTTGGC---------------TCGCCCCAGCACTCCCGCCAGACAT--CCG------CCTCCTCCACATCACTGGAGGTGGT---------TGCTGCT---------CCGACTACCGCTGCTGCTGTGGCTCCTGGACAGGGCGATAATTACACAATG-------------CCACCATCSizeHit CountTotal NormTotal
No Reads
droAna3
GCACCCACAGCAGCCTGTCTTCCATCTCAACTGGCTCCT------------------------------------------------CATCCTCCGGGGTGGGCGGCAGC------GGCAGCGGCAGTGGGTGTGGCAGCG------------------GCAGTGCCAGTGGCGTCGGGCCGCAGAGCCAGCAGAGCTACTCCTCCACCTTGTCGCTGGACAG------------------GTTCAGC---------------TCTCCGCTGCACTCGCGCCAGACAT--CCT------CTTCCTCCACGTCGCTGGAGGTGGGAG---------GACTGGCACC---------------------CTCT--------CCTCAGTGTTTCTCACGCGCGCAC----------ATCCCCCATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................................................................................................GCAGCGGCAGTGGGTGTGGCAGCG------------------GC....................................................................................................................................................................................................................................................................2614.004200002
........................................................................................................................GCGGCAGTGGGTGTGGCAGCG------------------GC....................................................................................................................................................................................................................................................................2313.003000003
.........................................................................................................................................AGCG------------------GCAGTGCCAGTGGCGT......................................................................................................................................................................................................................................................2011.001000001
...................TTCCATCTCAACTGGCTCCT------------------------------------------------..............................................................................................................................................................................................................................................................................................................................................2011.001010000
..................................................................................................................................GTGTGGCAGCG------------------GCAGTGCCAG............................................................................................................................................................................................................................................................2111.001100000
..................................................................................................................................................................GTGCCAGTGGCGTCGGGCCGCAGAGC.........................................................................................................................................................................................................................................2611.001010000
...........................................................................................CTCCGGGGTGGGCGGCAGC------.................................................................................................................................................................................................................................................................................................................1911.001100000
..................................................................................................GTGGGCGGCAGC------GGCAGCGGC........................................................................................................................................................................................................................................................................................................2111.001010000
........................................................................................................GGCAGC------GGCAGCGGCAGTGGGT.................................................................................................................................................................................................................................................................................................2211.001100000
..............................................................................................................................................................................................................................................................................................................................GGTGGGAG---------GACTGGCACC---------------------CTCT--------C..........................................2311.001010000
.........................................................................................TCCTCCGGGGTGGGCGGC..........................................................................................................................................................................................................................................................................................................................1811.001100000
.......................................................................................................................................................................................AGAGCCAGCAGAGCTACTCCTC........................................................................................................................................................................................................................2211.001000001
..................................................................................................................................................................................................................................................................................................................CACGTCGCTGGAGGTGGT.................................................................................................1811.001000001
............................................................................................................................................G------------------GCAGTGCCAGTGGCGTCG....................................................................................................................................................................................................................................................1911.001100000
.............................................................................................................................................................................................................................................................................................CAT--CCT------CTTCCTCCACGTCGA...........................................................................................................2111.001100000
..............................CTGGCTCCT------------------------------------------------CATCCTCCGGGGTGGGC.............................................................................................................................................................................................................................................................................................................................2611.001000001
...............................................................................................................................................................................................................................................................................GCACTCGCGCCAGACAT--CCT------CTTCC.....................................................................................................................2511.001100000
....................................................................................................................................................................GCCAGTGGCGTCGGGCCGCAGAGCCAGCA....................................................................................................................................................................................................................................2911.001000001
......................................................................................................................................GGCAGCG------------------GCAGTGCCAGTGGC........................................................................................................................................................................................................................................................2111.001010000
.................................................................................................................................................................................GGCCGCAGAGCCAGCAGAGCTACTCCT.........................................................................................................................................................................................................................2711.001100000
.......................................................................................................................................................................................................................................................C---------------TCTCCGCTGCACTCGCGCCAGA........................................................................................................................................2311.001100000
........................................................................................ATCCTCCGGGGTGGGCGGCAG........................................................................................................................................................................................................................................................................................................................2111.001100000
.......................................................................................................................................................................................................................................................C---------------TCTCCGCTGCACTCGCGCCA..........................................................................................................................................2111.001100000
........................................................................................................GGCAGC------GGCAGCGGCAGTGGGG.................................................................................................................................................................................................................................................................................................2220.501000001
......................................................................................................GCGGCAGC------GGCAGCGGCAGTGG...................................................................................................................................................................................................................................................................................................2220.501100000
........................................................................................................GGCAGC------GGCAGCGGCAGTG....................................................................................................................................................................................................................................................................................................1970.141100000
droBip1
GCACCCACAGCAGTCTGTCCTCCATCTCAACTGGCTCCT------------------------------------------------CCTCCTCCGGAGTGGGCGGCAGC------GGCAGCGGCAGTGGATGTGGCAGCG------------------GCAGTGCCAGTGGCGTCGGCCCGCAGAGCCAGCAGAGCTACTCCTCCACCTTGTCGCTGGACAG------------------GTTCGGG---------------TCTCCGCTGCACTCGCGTCAGACGT--CCT------CGTCCTCCACATCGCTGGAGGCGGGAG---------GGCTG-------------------------------------GC---------------------AC----------CCTCTCCTCSizeHit CountTotal NormTotal
No Reads
dp5
GCACCCACAGCAGCCTCTCGTCCATCTCGAGTGGCTCCT------------------------------------------------CGTCCTCCGGCGTGGGCGGGAGC------GGGAGCGC------------------------------------------CAGTGGGGCGGGC---CATAGCCAGCAAAGC---TCCTCGACGCTCTCCCTGGACCTGGACCGGGACCGCTACGCCTACGGT---------------TCGCCCATGCACTCGCGCCAGACCT--CGG------GCTCGTCCACGTCGCTGGACGTGAGTGCGGTGGGTGG------------------------------CAGTGGTGGTGTTCAGGCCGATACTTACACAATG-------------CCGCTCTCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................................................................................................GGAGC------GGGAGCGC------------------------------------------CAGTGGGGC......................................................................................................................................................................................................................................................2212.0020110000000
...........................................................................................................AGC------GGGAGCGC------------------------------------------CAGTGGGGCGGGC---...............................................................................................................................................................................................................................................2411.0010100000000
........................................................................................................................................................................GTGGGGCGGGC---CATAGCCAGCA....................................................................................................................................................................................................................................2211.0010100000000
.................................................................................................................................................................................................AAGC---TCCTCGACGCTCTCCC.............................................................................................................................................................................................................2011.0010001000000
..............................................................................................CGGCGTGGGCGGGAGC------GGGA.............................................................................................................................................................................................................................................................................................................2011.0010100000000
...................................................................................................................................................................................................................................................................................................................ACGTCGCTGGACGTGAGTGCGGTGGGT.......................................................................................2711.0010000001000
...................................................................................................................................................................................................................CTCCCTGGACCTGGACCG................................................................................................................................................................................................1811.0010100000000
...................................................................................................................................................................................................................................................................................................................ACGTCGCTGGACGTGAGTGCGGTGG.........................................................................................2511.0010100000000
.....................................................................................................GGCGGGAGC------GGGAGCGC------------------------------------------CAGTGG.........................................................................................................................................................................................................................................................2311.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................GTGGTGGTGTTCAGGCCGATACTT.............................2411.0010100000000
....................................................................................................................GGGAGCGC------------------------------------------CAGTGGGGCGG....................................................................................................................................................................................................................................................1911.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................GTGGTGTTCAGGCCGATACT..............................2011.0010100000000
...................................................................................................TGGGCGGGAGC------GGGAGCG..........................................................................................................................................................................................................................................................................................................1811.0010000001000
.........................................................................................................GGAGC------GGGAGCGC------------------------------------------CAGTGGGGCGGGC---C..............................................................................................................................................................................................................................................2711.0010000001000
............................................................................................................................................................................................................................................................................................ACCT--CGG------GCTCGTCCACGT..............................................................................................................1911.0010100000000
........................................................................................................................................................................................................................TGGACCTGGACCGGGACCG..........................................................................................................................................................................................1920.5010100000000
droPer2
GCAGCAACAGCAGGAGGAGGAACAACAACAGCAGCAGGA------------------------------------------------GGAGCATCATCACCAGCACCTGCAGCAGCAGCAGCAGCAGCA------------------------------GC------AGCATCAGCAGC---CGGATCCGGGGGCTCTAATCC-------TGCCGCAGG-ACA------------------ATATGCC--ACACAGCAGCAGTTC--------------GCCGGGCACCAGCA------GCTCTCCGCCGCCGCTGC----AG---CAGCAGCAGC------------------------------AGCACACGCTCACCCACACCACCCT--CACCATGCC-CATGCCCATGCCGCCCACSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...............................................................................................................................................................................................................................................................GCAGCAGTTC--------------GCCGGGCA......................................................................................................................................1811.001010000
...................................................................................................CCAGCACCTGCAGCAGCAGCAGCA..........................................................................................................................................................................................................................................................................................................2411.001001000
..................................................................................................................GCAGCAGCAGCAGCA------------------------------GC------AGCATCAGCA....................................................................................................................................................................................................................................................27200.051010000
droWil2
GAACCCACAGTAGCCTCTCATCAATTTCAAACGGCTCATCAGCATCATCCACAAACTCCGTGTCCTCTTTGGCGTCGTCGTCGTCGTCGTCGTCCGGAGTGGGGGGCAGT------GGGAGTGTGAGTG------------------------------CC------------------------------------------ATCACTTTATCGTTGGAGCA------------------TTTTGGTTCGGCCAATTGCATTTCGCCCTTGCATTCACGGCAAGCAT--CTGGCAGTGGCTCGTCTGCATCGTTGGAGACTGG--CCATAGTCAA------------------------------A-CTGGCCAGGGACAGGCTGATAATTATACAATGCC----------ACCAACACCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................................................................................................................................................................................................................................................................................................................CTGCATCGTTGGAGACTGG--C..............................................................................................2014.00420200
................CTCATCAATTTCAAACGGCT.................................................................................................................................................................................................................................................................................................................................................................................................2012.00220000
...............................................................................................................................................................................................................................................................................................................GTCTGCATCGTTGGAGACTGG--CC.............................................................................................2312.00210100
...........................................................................................GTCCGGAGTGGGGGGCAGT------.................................................................................................................................................................................................................................................................................................................1911.00100100
.................................................................................................................................................................................................................................................................................................................CTGCATCGTTGGAGACTGG--CC.............................................................................................2111.00110000
..................................................................................................GTGGGGGGCAGT------GGGAGTGTGAG......................................................................................................................................................................................................................................................................................................2311.00101000
...........................................................................................................................................................................................................................................................................................AGCAT--CTGGCAGTGGCTCGTCTGC................................................................................................................2411.00101000
......................................................................................................................................................................................................................GTTGGAGCA------------------TTTTGGTTCGGCCA......................................................................................................................................................................2311.00100010
..............................................................................................................................................................................................................................................................................................AT--CTGGCAGTGGCTCGTCTGCATC.............................................................................................................2411.00101000
................................................CCACAAACTCCGTGTCCTCTTTGGCGTC.........................................................................................................................................................................................................................................................................................................................................................2811.00100100
..................................................................................................................................................................................................................................................................................................................TGCATCGTTGGAGACTGG--CCA............................................................................................2111.00100100
..........................................................................................................................................................................................................................................................................................................GGCTCGTCTGCATCGTTGGAGACTGG--C..............................................................................................2711.00100010
..........................................................................................................................GTGAGTG------------------------------CC------------------------------------------ATCACTTTATCGTTGGAGC.......................................................................................................................................................................................................2811.00100100
..........................................................................................................................................................................................................................................................................................AAGCAT--CTGGCAGTGGCTCGT....................................................................................................................2111.00100100
........................................................................................................................................................................................................................................................................................................................................ATAGTCAA------------------------------A-CTGGCCAGGGACAGGCTG...................................2711.00101000
..............................................................................................................................................................................................................................................................................................................CGTCTGCATCGTTGGAGACTGG--CCATA..........................................................................................2711.00101000
.................................................................................................................................................................................................................................................................................ATTCACGGCAAGCAT--CTGGC..............................................................................................................................2011.00100010
..................................................................................................GTGGGGGGCAGT------GGGAGT...........................................................................................................................................................................................................................................................................................................1811.00101000
...............................................................................GTCGTCGTCGTCGTCCGGAGTGGG..............................................................................................................................................................................................................................................................................................................................2411.00100010
droVir3
ACAC-----GCAGCCTCTCATCAATTTCGAGCGGCTCCTCGCAAACAT---------------------------------------CCTCGTCGGGTGTGGGCGGCTGT------GCTCAGTTGAGCC------------------------------CCAG-CCTGGTGGCAT---C---CAG--------------CGCCTCGACGCTGTCCCTGGACAT------------------GGAGCAC---------------TCGCCGCAGCATTCGCGCCAAGCCT--CTG------GCTCCTGCACGTCGCTGGATGTGGG---------CAGTGTT------------------------------GTGCAGTGTCCCGTTGATAATTATACAATGTC----------AATGCCATCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......................................................................................................................CAGTTGAGCC------------------------------CCAG-CCTGGT...........................................................................................................................................................................................................................................................2014.004001000000000001001000100000000000000000000000000000000000000000
...................................................................................................................................................................................................................GTCCCTGGACAT------------------GGAGCAC---------------T.............................................................................................................................................................2012.002200000000000000000000000000000000000000000000000000000000000000
........................................................................................................................AGTTGAGCC------------------------------CCAG-CCTGGTGGC........................................................................................................................................................................................................................................................2212.002002000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................GTT------------------------------GTGCAGTGTCCCGTT....................................1812.002000000000000000001000000000000000010000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................GATGTGGG---------CAGTGTT------------------------------GTGCAGT............................................2212.002000000000000000000000000000000000000000000000000000000000000020
..................................................................................................................................................................................................................................................................................TTCGCGCCAAGCCT--CTG------GCTCCTGC..................................................................................................................2512.002000000000000000000000000000000000000000000000000000000000000002
.............................................................................................................................................................................................................................AT------------------GGAGCAC---------------TCGCCGCAGC....................................................................................................................................................1912.002001000000000000000000000000000000000000000000000000000000000010
...............................................T---------------------------------------CCTCGTCGGGTGTGGGCGGCTG........................................................................................................................................................................................................................................................................................................................2312.002000000000000000000000000000000000000000000000000000000000000002
.......................................................................................................................CAGTTGAGCC------------------------------CCAG-CCTGGTGGCA.......................................................................................................................................................................................................................................................2411.001000000000000000000100000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................GCTCCTGCACGTCGCTGGA.......................................................................................................1911.001000000000000000001000000000000000000000000000000000000000000000
..........................................AAACAT---------------------------------------CCTCGTCGGGTGTGGGCGGCT.........................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000100000000000000000000000000000
............................................................................................................................................................................................................................CAT------------------GGAGCAC---------------TCGCCGCAGC....................................................................................................................................................2011.001000000000000000010000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................GTGGG---------CAGTGTT------------------------------GTGCAG.............................................1811.001000000000000000000000000000000000000000000000000000000000000010
.............................................................................................................................................................................................................................................................................................CCT--CTG------GCTCCTGCACGTCGCT..........................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................CCTGCACGTCGCTGGATGTGGG---------C.......................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................TGTT------------------------------GTGCAGTGTCCCGTTGATAA...............................2411.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................TGGGCGGCTGT------GCTCAGTTGAGCC------------------------------CCA...................................................................................................................................................................................................................................................................2711.001000000000000000000000000010000000000000000000000000000000000000
.........................................................................................................................GTTGAGCC------------------------------CCAG-CCTGGTGG.........................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.............................................CAT---------------------------------------CCTCGTCGGGTGTGGGC.............................................................................................................................................................................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................TCCCTGGACAT------------------GGAGCAC---------------T.............................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................CAGTTGAGCC------------------------------CCAG-CCTGGTG..........................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000001000
.....................................................................................................................................................................CTGGTGGCAT---C---CAG--------------CGCCTCGACGCTGT................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................GCCTCGACGCTGTCCCTGGA.........................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.............................................CAT---------------------------------------CCTCGTCGGGTGTGGGCGGCT.........................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000010
..........................................................................................................................................................................................................................................................................................AAGCCT--CTG------GCTCCTGCACGTCGCT..........................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................AGCAC---------------TCGCCGCAGCATT.................................................................................................................................................1811.001000000000000000000100000000000000000000000000000000000000000000
.................................GCTCCTCGCAAACAT---------------------------------------CCTCGTCGGGT...................................................................................................................................................................................................................................................................................................................................2611.001000000000000000010000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................GTCCCTGGACAT------------------GGAGCAC---------------TC............................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
.......................................................................................CCTCGTCGGGTGTGGGCGGCT.........................................................................................................................................................................................................................................................................................................................2111.001100000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................CGCTGGATGTGGG---------CAGTGTT------------------------------GTGCAGT............................................2711.001000000000000000000000000000000000000000000000000000000000001000
.......................................................................................................................CAGTTGAGCC------------------------------CCAG-CCTGGTGGC........................................................................................................................................................................................................................................................2311.001000001000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................TGTCCCTGGACAT------------------GGAGCAC---------------TCGCC.........................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................ATTCGCGCCAAGCCT--CTG------GC........................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000001000
droMoj3
----------CAGCCTCTCATCAATTTCGAGCGGCTCCT------------------------------------------------CCTCGTCAGGTCTGGGTGGCTGC---------------------------------------------------------AGTGCCGCCGCT---CT---------CAGCCCCAGCTCCACACTCTCGCTGGACAT------------------GGAGCAG---------------TCGCCCATGCACTCGCGCCAGGCAT--CGG------GCTCCAGCACTTCGCTGGATGTGGC---------TGC------------------------------T---------------GTTGATAATTATATA----------------CCAGCCGCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
........................................................................................................................................................................................................AGCTCCACACTCTCGCTG...........................................................................................................................................................................................................1811.001100000
...........AGCCTCTCATCAATTTCGAGC.....................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
................................................................................................................................................................................GCT---CT---------CAGCCCCAGCTCCACAC...................................................................................................................................................................................................................2211.001100000
................................................................................................................................................................................................................................................................................CACTCGCGCCAGGCAT--CGG------GCT.......................................................................................................................2211.001000010
droGri2
GCACAAACAGCAGTCTCTCATCAATTTCGAGTGGCTCATCGCATACAT---------------------------------------CGTCGTCGGGTGTGGGTGGCAGC------GCTGCACTGAGCC----------CG------------------ACAAGCCTGGTGGCAT---C---CAG--------------CGCGTCGACTCTCTCGCTGGACAC------------------GGAAAAC---------------TCGCCGATGCATTCGCGCCAAGCCT--CTG------GCTCTTGCACATCGCTGGATGTGGG---------CGTT---------------------------------GCTCAGGGTCCGTTTGATAATTATACACTGTC----------AATGCCATCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
......................................................................................................................................................................................................................................................AC---------------TCGCCGATGCATTCGCG.............................................................................................................................................1911.00110
.............................................................................................................................AGCC----------CG------------------ACAAGCCTGGTG..........................................................................................................................................................................................................................................................1811.00110
..................................................................................................................................................................................................................................................................................................................CACATCGCTGGATGTGGG---------CGTT---------------------------------GCTCAGG............................................2911.00101

Generated: 05/19/2015 at 05:13 AM