ID:

dsi_13761

 Coordinate:

x:9360823-9360972 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-6.8 -6.7 -6.6 -6.6

Flybase annnotation

five_prime_UTR [x_9360821_9360822_-]; CDS [x_9360703_9360820_-]; exon [x_9360703_9360822_-]; intron [x_9360823_9361254_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TCTATTTATAGTTTTCTAAGAATATTCCATTTCTAACTTTTTGAATTCAGAATCACAGAATGTTAAAATATTGCTGTTTTCCATAAGAATCAGGCCTTAAAAATAACCTAAAGTCTTAGAATATCACACATAAAGTGGTTACTCTGGAACTTTCCGAGAGTTAACAGTTCCTATATAAATATATATTTTCCTATTCACAGCTATGAAGCTCTACGCCCTGTTCTCCCTTCTGGTGGGATCTTTGGCCATT
*********************************************************************************...............((.................(((((..(((((.......)))))...)))))))***************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 GSM343915
embryo
 M023
head
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M024
male body		 M053
female body
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
..............................................................................................................................................................................................................................CTCCCTTCTGGTGGGATCTTTGGC.... 24 0 1 13.00 13 13 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................CTCCCTTCTGGTGGGATCTTTGGCC... 25 0 1 6.00 6 6 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................TCTCCCTTCTGGTGGGATCTTTGGC.... 25 0 1 4.00 4 4 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TCCCTTCTGGTGGGATCTTTGGC.... 23 0 1 4.00 4 4 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................CTATGAAGCTCTACGCCCT............................... 19 0 1 3.00 3 3 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................AACAACTATGAAGCTCTACGCCCT............................... 24 2 1 3.00 3 2 0 0 0 0 0 0 1 0
................................................................................................................................................................................................................................CCCTTCTGGTGGGATCTTTGGC.... 22 0 1 3.00 3 3 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................AACTATGAAGCTCTACGCC................................. 19 1 1 2.00 2 1 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................TATACTCCCTTCGGGTGGGA............ 20 3 1 2.00 2 0 0 0 2 0 0 0 0 0
.................................................................................................................................................................................................................................CCTTCTGGTGGGATCTTTGGC.... 21 0 1 2.00 2 1 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................CAACTATGAAGCTCTACGCCCTGT............................. 24 1 1 2.00 2 2 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................CTTCTGGTGGGATCTTTGGC.... 20 0 1 2.00 2 0 2 0 0 0 0 0 0 0
................................................................................................................................................................................................................................CCCTTCTGGTGGGATCTTTGGCC... 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................AGCTCTACGCCCTGTTCTCCCG...................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................................................CATAAGAATCAGGCCTTAAAAATAAC............................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................AACAACTATGAAGCTCTACGCC................................. 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................ACTATGAAGCTCTACGCCC................................ 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................CCTGTTCTCCCTTCTGGTGGG............. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................CTATGAAGCTCTACCCCT................................ 18 2 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................CTCCCTTCTGATGGGATCTTTGGC.... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TATGAAGCTCTACGCCCT............................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................TCTGGTGGGATCTTTGGCC... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................CCTTCTGGTGGGATCTTTG...... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................CAACTATGAAGCTCTACGCC................................. 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0
..............................TCCTAACTTTTTGAATTCAG........................................................................................................................................................................................................ 20 1 1 1.00 1 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................................................................CCCTTCTGGTGGGATCT......... 17 0 1 1.00 1 0 0 0 0 1 0 0 0 0
.......................................................................................................................................................................................................GGCATGAAGCTCTACGCCCTGTTCTCC........................ 27 2 1 1.00 1 0 0 0 0 0 0 1 0 0
...................................................................................................................................AAAGTGGTTACTCTGGAA..................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................ACTATGAAGCTCTACGCCCT............................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................CTACGCCCTGTTCTCCCTTCTGGTGG.............. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................................................................................................................TAAAGTGGTTACTCTGGAACT................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................................................................TATGAAGCTCTACGCCCTGT............................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................TCTGGTGGTATCTTTGGCC... 19 1 1 1.00 1 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................................................CTATGAAGCTCTACGCCCG............................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................CAACTATGAAGCTCTACGCCCT............................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................CTATGAAGCTCTACGCCC................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................CTTTTTGAATTCAGAATCACAGA............................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................AGTGGTTACTCTGGAACTTTCCGA............................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................ACACATAAAGTGGTTACTCTG........................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................TATGAAGCTCTACGCCCC............................... 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................TTCTGGTGGGATCTTTGGC.... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0
................................CTAACTTTTTGAATTCAGAATCACAGA............................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................CGCACTGTTCTCCTTTCTTGT................ 21 3 3 0.33 1 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................................................................................TTCTGGGGGGCTCTTTGGC.... 19 2 4 0.25 1 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................ACAACTATGAGGCTCTAC.................................... 18 2 5 0.20 1 0 0 1 0 0 0 0 0 0
....ATTATAGTTTTCTAAGA..................................................................................................................................................................................................................................... 17 1 5 0.20 1 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................................................TATACTCCCTTCGGGTGGG............. 19 3 8 0.13 1 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................AGCTATGAAGGTCTTCG................................... 17 2 9 0.11 1 0 0 0 0 0 0 0 0 1
...........................................................................................................................................................................................................................ATACTCCCTTCGGGTGGGA............ 19 3 16 0.06 1 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

AGATAAATATCAAAAGATTCTTATAAGGTAAAGATTGAAAAACTTAAGTCTTAGTGTCTTACAATTTTATAACGACAAAAGGTATTCTTAGTCCGGAATTTTTATTGGATTTCAGAATCTTATAGTGTGTATTTCACCAATGAGACCTTGAAAGGCTCTCAATTGTCAAGGATATATTTATATATAAAAGGATAAGTGTCGATACTTCGAGATGCGGGACAAGAGGGAAGACCACCCTAGAAACCGGTAA
*****************************************************************************************************...............((.................(((((..(((((.......)))))...)))))))********************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M024
male body		 M025
embryo
 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 GSM343915
embryo
...............................................................................................................TCAGAATCTTATAGTGTGTAT...................................................................................................................... 21 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................CTTCGAGATGCGGGACAAGAG......................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.........................................ACTTAAGTCTTAGTGTCTTA............................................................................................................................................................................................. 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.............................................AAGTCTTAGTGTCTTACAAT......................................................................................................................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................GGATACGTGGCGATAATTC.......................................... 19 3 7 1.14 8 0 0 8 0 0 0 0 0 0 0 0
............................................TAAGTCTTAGTGTCTTACAAT......................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................AGTCTTAGTGTCTTACAAT......................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.............................................AAGTCTTAGTGTCTTACAATT........................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................................................................GGGAAGCCCACCCTAGAAACC..... 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................GCGGGACAAGAGGGAAGACCA................ 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
.........................................ACTTAAGTCTTAGTGTCTT.............................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................AGTGTCGATACTTCGAGATGC................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................GGATAAATGTCGAAACTTC.......................................... 19 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
...........................................TTCAGTCTTAGAGTCTTA............................................................................................................................................................................................. 18 2 8 0.25 2 0 0 0 0 0 0 0 2 0 0 0
........................................................................................................................TATAGGGTGTATTTCTCTAA.............................................................................................................. 20 3 13 0.08 1 0 0 0 0 0 0 0 0 0 1 0
..............................................................................................................................................................................TATTTATATATAAAGGGA.......................................................... 18 1 14 0.07 1 0 0 0 0 0 0 0 0 0 0 1
.....................................................................................................................................................................................................................GCGGGACTAGAGGGA...................... 15 1 15 0.07 1 0 0 0 0 0 0 0 0 1 0 0
.............................................................................................................................................................................................GGAGAAGCGGCGATACTT........................................... 18 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
...................................................................................TTTCTTAGGCCGGAATTAT.................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0
.............................................................................................................................................................................................GGATACGTGGCGATAGTT........................................... 18 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
................................................TCTGGGTGTCTTACAATCT....................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:9360773-9361022 - dsi_13761 TCT--ATTTATAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCTAAGAATATTCCATTTCTAA-CTTTTTGAATTCAGAATCACAGAATGTTAAAATATTGCTGTTTTCCATAAGAATCAGGCCTTAAAAAT-AACCTAAAG-------------TCTTA----------GAATATCACACATAAAGTGG--TTACTCTGGAACTTTCCGAGAGTTAACAGTTCCTATAT--AAATA-----TATA-----------TTTTCCTATTCACAGC----TATGAAGCTCTAC---GCCCTGTTCTCCCTTCTGGTGGGATCTTTGGCCATT
droSec2 scaffold_15:589190-589439 - TCT--ATTTATAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCTAAGAATATTCCGTTCCTAA-CTTTTTGTATTTCGAATCACAGAATGTTAAAATATTGCTGTTTTCCATAAGAATCAGGCCTTAAAAAT-AACCTAAAA-------------TCTTA----------GAATATCACACATAAAGTGG--TTTCTCTGGAACTTTCCGACAGTTAACAGTTTCTATAT--AAATA-----TATA-----------TTTTCCTATTCACAGC----TATGAAGCTCTAC---GCCCTGTTCTCCCTTCTGGTGGGATCTTTGGCCATT
dm3 chrX:9824458-9824711 - TCT--ATTAATAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTCTAAGAATATAACGTGCCTAG-TTTTTTGAATTCAGAATCACAGAATGTTAAAATAAGTCATTTTTCCATAATAATCAGGCATACAAAAT-AACCTAAAA-------------TCTTA----------AAATCTCACACATAATGTGGGTTTACTCTGGAACTTTCCAACAGTTAACAGTTTCAATAT--AAATA---CATATA-----------TTTTCCTATTCACAGC----TATGAAGCTCTAC---GCCCTGTTCTCCCTTCTGGTGGGATCTTTGGCCATT
droEre2 scaffold_4690:5286785-5287025 + TCT--ATTAATAGT------------------------------------------------------------------------------------------------------------------------------------TATATTATTATTATATTGTATATATAGTTCAGTTATATCATACTATTATTATTAAAAGTGATAGTATTCTGAGAATAT-------------------------------------------------------------------AGGCCTTAAAGAG-----TAAAT-------------TCCCA-----------AATATCACACACAAAGTGT--TGCTTCTGGAACTTTCCGACCGCTAACAGTTTCTG-------ATAAT---TCTG-----------CTCTCCTATTCGCAGC----TATGAAGCTCTAC---GCCCTGTTCTCCCTCCTGGTGGGATCTTTGGCCATT
droYak3 X:18417174-18417419 - CTA---TTAATGGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCAAGAATATTAATTTTTAAACCTTTTTGAATACAAAATCACAGAATGTTAAGAAAACGCTT-------------TCAGGCCTGC-AAGC-AACCTAAGATTTCATATACAGTTCTTA-----------AATCTCACACATATTATGA--TTCTTCTGGAACTTTCCGACTGTCTACAGTTTCTATAA--AATTG-------CA-----------CTCTCCTATTTACAGC----AATGAAGCTCTAC---GCCCTCTTCTCCCTTCTGGTGGGATCTTTGGCCATT
droEug1 scf7180000409032:38190-38484 + TCC--ATT--TAGTTTTCTCTAATATATACTAAGCCTT---T------------------------------------------------------------CATCAAAAACAATCTATT--A-AATGTACTCCTTAAACTAGAGTTTGTTTAATGTTAAATATTTAATATAGTTTTGTTATTACAA------------------------------------------------------------------AAATAATT---------CTGCTGC--------------------------C-AAGCTAAGTCTGATAATCTAGCCAAAAAATAGCCAAAAAA-----------GCTAAA--ATCCACTAGAAGCTACCCACAGTTTACAGTTACTTTAT--TTTTG---CATTTC------T---CTTTTGTTATTTACAGC----TATGAAGCTCTAC---GCCTTGTTCTCCCTTCTGGTGGGATCTCTGGCCATT
droBia1 scf7180000302187:1572515-1572791 + GTT--TTCAAGAGA-------------AACCTAGCCACATATTCTTATAAATTATCAACAGATAAACAAACAT---AAATTCATTGGAAATAGGGTTAGGTTCTCCGAAAAAGACCTCCTAAA-AATGTACACC------------------------------TTAT----------------CAT------------------------------------------------------------------AGAAAACTG---------TGGTGC--------------------------CCAA--------------------------AAAGCCTGGAAAG----------CTCAGA--TTCTTCTGGAAGTTTCCT-CGATTTACAGTTCCATTGT--CAATAACCCATACA----------TCATTTTTACTTTCAGC----TATGAAGCTGTAC---GCCCTGTTCTCCCTTCTGGTGGGATCTCTGGCCATT
droTak1 scf7180000415872:484949-485149 - CTA--AAAATA--------------------------------------AATAATTTAAAAATAAATAAATAG----------------------------------AAAAAAATTTCCCTAAATAG----------ATCAAGAGATCGTATAAT---------TTAT----------------TAT-----------------------------------AA-----------------------------------------------------------------------------------------------------------------------------------------T--CTTGTCAAAAACTTTCCTACATTTTACAGTTTCAGTTGGTCTATAATATATCCA----------CCTCTTCCATTTACAGC----TATGAAGCTGTAC---GCCCTGTTCTCCCTGCTGGTGGGATCTTTGGCCATC
droEle1 scf7180000491013:721919-721986 - A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA-----------TTTTCTTATTTACAGC----CATGAAGCTCTAC---GCATTGCTTGCCCTTTTGGTGGGATCTTTGGCCATT
droRho1 scf7180000780080:237994-238103 + TC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGAAGTCTCCGACAATTTACAGTTTCAGTTG--CTAAT---TATATA-----------TTTTCGTATTTACAGT----AATGAAGCTCTAC---GCCCTGTTTTCCCTGCTGGTGGGATCTTTGGCCATC
droFic1 scf7180000454073:2759113-2759372 - TAT--ACATTTGGTTGCTTCTAACGTTTGCCTTGCACT---T-----------ACTTACAAATACTTAAATACTTAAAAATCATTTTTAAGATGATT--GTTCT------------------------------------------------------------------------------------------------------------------------------------TTTTTAGACATCAATATCAATAAATGTTGAGAGCAAACTA-------------TC--------------------------------------------AGCCTGAAAAA----------ACTAGA--TTCTTCTGGAAGCTTTCTCGAGTTAACAGTTATAATAG--CAATA---TATACA----------TAATTCTTATTTGCAGT----AATGAAGCTCTAC---GCCCTGTTCTCCCTGCTGGTGGGATCCCTGGCCATT
droKik1 scf7180000302592:433963-434052 + TTCCTATT--TAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--TAATA-----TTTT-----------TTCTCCTCTTTGCAGTAAGACATGAAGCTCTAC---GCCCTGCTCTCACTTTTGGTGGGATCTCTGGCCATT
droAna3 scaffold_13047:275810-275857 + ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGAAGTTCTTC---GCCCTGCTGTCCCTGCTGCTGGGATCTCTGGCCATC
droBip1 scf7180000396431:67285-67521 + TAT--CTCATGACT-----------------------------------TTTGGTCAAAAAACAGTC----------AATTGGTTGAATCTAATTTAAAAT--------------------------------------------------------------------------------------------------------------TCCTCTAAAATCTTCTTTTCTTAC-ACTTTCGAACCC---------------------------------------------------------AACTTAAAG-------------CCTTA----------C--------------TTTAA--CGATTATGTAACCCCCTT-CGCATTACCGTTTCCTTAT--CGCTAAT---TCTGAGCTTATCTCTGAATCCCCTTTGCAGGC-CCGATGAAGTTCTTC---GCCCTGCTGTCCCTCCTGCTGGGATCTCTGGCCATC
dp5 XL_group3a:1055773-1055838 - T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCCTTACAGCTGGACATGAAGCTCTAC---GCCCTGCTCTCCCTGCTCGTCGGCTCCCTGGCCATT
droPer2 scaffold_15:1837018-1837083 + T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCCTTACAGCTGGACATGAAGCTCTAC---GCCCTGCTCTCCCTGCTCGTCGGCTCCCTGGCCATT
droWil2 scf2_1100000004909:3084454-3084503 + C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATGAAGCTCTTT---GCCTTTGTCTCTGTGGCTGTTGTCCTATTGGCAATC
droVir3 scaffold_12970:8962838-8962908 + TA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTCTGTTTACAGCAAAACATGAAGCTCCTT---GCCCTGCTCCCCGTGCTCCTGGCCATTCTGACATTT
droMoj3 scaffold_6473:16521445-16521516 - TCT--CT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTCTGCAGCTAGACATGAAGCTCCACTGTACCCTGTTGCCCCTGCTCCTGGGCATCCTGGCAATT
droGri2 scaffold_15203:11655730-11655800 + TAT--TTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTGCTTACAGCCAGCCATGAAACTGTTC---GCCCTGCTCCCCATGCTCCTGGGCTTTCTGGCCATT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TCT--ATTTATAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCTAAGAATATTCCATTTCTAA-CTTTTTGAATTCAGAATCACAGAATGTTAAAATATTGCTGTTTTCCATAAGAATCAGGCCTTAAAAAT-AACCTAAAG-------------TCTTA----------GAATATCACACATAAAGTGG--TTACTCTGGAACTTTCCGAGAGTTAACAGTTCCTATAT--AAATA-----TATA-----------TTTTCCTATTCACAGC----TATGAAGCTCTAC---GCCCTGTTCTCCCTTCTGGTGGGATCTTTGGCCATTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCCTTCTGGTGGGATCTTTGGC....24113.0013001300000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCCTTCTGGTGGGATCTTTGGCC...2516.00600600000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCCCTTCTGGTGGGATCTTTGGC....2514.00400400000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCTTCTGGTGGGATCTTTGGC....2314.00400400000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................C----TATGAAGCTCTAC---GCCCT...............................1913.00300300000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCTTCTGGTGGGATCTTTGGC....2213.00300300000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTCTGGTGGGATCTTTGGC....2112.00200100000000100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTGGTGGGATCTTTGGC....2012.00200000000000200000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCTTCTGGTGGGATCTTTGGCC...2312.00200200000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTCTAC---GCCCTGTTCTCCCG......................2211.00100100000000000000
.........................................................................................................................................................................................................................................................................................CATAAGAATCAGGCCTTAAAAAT-AAC.................................................................................................................................................................................................2611.00100000000000100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGTTCTCCCTTCTGGTGGG.............2111.00100100000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGAAGCTCTAC---GCCCT...............................1811.00100100000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGGTGGGATCTTTGGCC...1911.00100000000000100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTCTGGTGGGATCTTTG......1911.00100000000000100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCTTCTGGTGGGATCT.........1711.00100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................AAAGTGG--TTACTCTGGAA..............................................................................................................................1811.00110000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAC---GCCCTGTTCTCCCTTCTGGTGG..............2611.00100000000000100000
..................................................................................................................................................................................................................................................................................................................................................................TAAAGTGG--TTACTCTGGAACT............................................................................................................................2111.00101000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGAAGCTCTAC---GCCCTGT.............................2011.00100100000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................C----TATGAAGCTCTAC---GCCCG...............................1911.00100100000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................C----TATGAAGCTCTAC---GCCC................................1811.00100100000000000000
............................................................................................................................................................................................................................................CTTTTTGAATTCAGAATCACAGA..................................................................................................................................................................................................................................................2311.00100100000000000000
.....................................................................................................................................................................................................................................................................................................................................................................AGTGG--TTACTCTGGAACTTTCCGA......................................................................................................................2411.00100100000000000000
.............................................................................................................................................................................................................................................................................................................................................................ACACATAAAGTGG--TTACTCTG.................................................................................................................................2111.00110000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGAAGCTCTAC---GCCCC...............................1811.00100100000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGGTGGGATCTTTGGC....1911.00100000000000100000
.......................................................................................................................................................................................................................................CTAA-CTTTTTGAATTCAGAATCACAGA..................................................................................................................................................................................................................................................2711.00100100000000000000
droSec2
TCT--ATTTATAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCTAAGAATATTCCGTTCCTAA-CTTTTTGTATTTCGAATCACAGAATGTTAAAATATTGCTGTTTTCCATAAGAATCAGGCCTTAAAAAT-AACCTAAAA-------------TCTTA----------GAATATCACACATAAAGTGG--TTTCTCTGGAACTTTCCGACAGTTAACAGTTTCTATAT--AAATA-----TATA-----------TTTTCCTATTCACAGC----TATGAAGCTCTAC---GCCCTGTTCTCCCTTCTGGTGGGATCTTTGGCCATTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................C----TATGAAGCTCTAC---GCCCTGT.............................2113.0031011
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTGGTGGGATCTTTGG.....1911.0010010
....................................................................................................................................................................................................................................................................................................................................................................................GAACTTTCCGACAGTTAACAG............................................................................................................2111.0011000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCACAGC----TATGAAGCTCTAC---GCCC................................2711.0011000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTATTCACAGC----TATGAAGCTC..........................................2211.0011000
dm3
TCT--ATTAATAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTCTAAGAATATAACGTGCCTAG-TTTTTTGAATTCAGAATCACAGAATGTTAAAATAAGTCATTTTTCCATAATAATCAGGCATACAAAAT-AACCTAAAA-------------TCTTA----------AAATCTCACACATAATGTGGGTTTACTCTGGAACTTTCCAACAGTTAACAGTTTCAATAT--AAATA---CATATA-----------TTTTCCTATTCACAGC----TATGAAGCTCTAC---GCCCTGTTCTCCCTTCTGGTGGGATCTTTGGCCATTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCCCTTCTGGTGGGAT...........1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTCTGGTGGGATCTTTGGC....2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTCTAC---GCCCTGTTCTC.........................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................TTCAGAATCACAGAATGTTAAA..........................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAGCTCTAC---GCCCTGTTCTCC........................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........AGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTCTAAGAATATAACGTGC..............................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTGGTGGGATCTTTGGC....2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGAAGCTCTAC---GCCCTGTTCTCCCT......................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAGCTCTAC---GCCCTGTTCTCCCT......................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCTCTAC---GCCCTGTTCTC.........................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCACAGC----TATGAAGCTCT.........................................2112.0020000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCTTCTGGTGGGATCTTTGGC....2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTCCCTTCTGGTGGGATCT.........2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGAAGCTCTAC---GCCCTGTTC...........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTAC---GCCCTGTTCTCCC.......................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAGCTCTAC---GCCCTGTT............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGGTGGGATCTTTGGC....1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................ATTCAGAATCACAGAATGTT.............................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGGTGGGATCTTTGGCCA..2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTGGTGGGATCTTTGG.....1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................TAAGTCATTTTTCCATAATA.....................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTAC---GCCCTGTTCTCCCTT.....................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGAAGCTCTAC---GCCCTGT.............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCTCTAC---GCCCTGTTCTCCC.......................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGAAGCTCTAC---GCCCT...............................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................TCTAAGAATATAACGTGCCTA...........................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCCCTTCTGGTGGGATC..........1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAC---GCCCTGTTCTCCCTTCTG..................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTCTAC---GCCCTGTTCTCCC.......................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGAAGCTCTAC---GCCCTGTTCTCCC.......................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTCTGGTGGGATCTTTG......1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCTTCTGGTGGGATCTTTGG.....2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTGGTGGGATCTTTGGCCAT.2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGCTCTAC---GCCCTGTTC...........................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................C----TATGAAGCTCTAC---GCCCTGTT............................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---GCCCTGTTCTCCCTTCTGGTGGGA............2511.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTCTAC---GCCCTGTTCTCCCTTC....................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGAAGCTCTAC---GCCCTGTTCTC.........................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................T-AACCTAAAA-------------TCTTA----------AAACAG.........................................................................................................................................................2190.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
droEre2
TCT--ATTAATAGT------------------------------------------------------------------------------------------------------------------------------------TATATTATTATTATATTGTATATATAGTTCAGTTATATCATACTATTATTATTAAAAGTGATAGTATTCTGAGAATAT-------------------------------------------------------------------AGGCCTTAAAGAG-----TAAAT-------------TCCCA-----------AATATCACACACAAAGTGT--TGCTTCTGGAACTTTCCGACCGCTAACAGTTTCTG-------ATAAT---TCTG-----------CTCTCCTATTCGCAGC----TATGAAGCTCTAC---GCCCTGTTCTCCCTCCTGGTGGGATCTTTGGCCATTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTAC---GCCCTGTTCTCCCTCC....................2312.0022000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTTCTCCCTCCTGGTGG..............1911.0010001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGAAGCTCTAC---GCCCTGTTCTCCCTCC....................2911.0011000000
droYak3
CTA---TTAATGGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCAAGAATATTAATTTTTAAACCTTTTTGAATACAAAATCACAGAATGTTAAGAAAACGCTT-------------TCAGGCCTGC-AAGC-AACCTAAGATTTCATATACAGTTCTTA-----------AATCTCACACATATTATGA--TTCTTCTGGAACTTTCCGACTGTCTACAGTTTCTATAA--AATTG-------CA-----------CTCTCCTATTTACAGC----AATGAAGCTCTAC---GCCCTCTTCTCCCTTCTGGTGGGATCTTTGGCCATTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCCCTTCTGGTGGGATCTTTGGCC...27111.0011001100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCCCTTCTGGTGGGATCTTTGGCC...2615.00501400000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCTTCTGGTGGGATCTTTGGCC...2413.00300300000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCCCTTCTGGTGGGATCTTTGGC....2612.00200200000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCTCCCTTCTGGTGGGATCTTTGGCC...2912.00200200000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCCCTTCTGGTGGGATCTTTGGCCA..2812.00201100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCCTTCTGGTGGGATCTTTGGC....2411.00100100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAC---GCCCTCTTCTCCCTTCTGGTGC..............2511.00100100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................TTG-------CA-----------CTCTCCTATTTACAGC----....................................................2111.00101000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAC---GCCCTCTTCTCCCTTCTGGTGGG.............2711.00100100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCCCTTCTGGTGGGATCTTTGGCCA..2711.00101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGGTGGGATCTTTGGCCAT.2211.00100100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAGCTCTAC---GCCCTCTT............................2011.00100100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTCTAC---GCCCTCTTCTCCCTT.....................2511.00100100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCCCTTCTGGTGGGATCTTTGGC....2511.00101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGCTCTAC---GCCCTCTTCTCCCTTC....................2711.00101000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCTTCTGGTGGGATCTTTGGCCATC2711.00100100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTCTGGTGGGATCTTTGG.....2011.00100100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC----AATGAAGCTCTAC---GCCCT...............................2111.00100100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTCTAC---GCCCTCTTCTCCC.......................2111.00100100000000
........................................................................................................................................................................................................................................................................AAGAAAACGCTT-------------TCAGGCCTGC-AAGC-....................................................................................................................................................................................................2611.00100100000000
droEug1
TCC--ATT--TAGTTTTCTCTAATATATACTAAGCCTT---T------------------------------------------------------------CATCAAAAACAATCTATT--A-AATGTACTCCTTAAACTAGAGTTTGTTTAATGTTAAATATTTAATATAGTTTTGTTATTACAA------------------------------------------------------------------AAATAATT---------CTGCTGC--------------------------C-AAGCTAAGTCTGATAATCTAGCCAAAAAATAGCCAAAAAA-----------GCTAAA--ATCCACTAGAAGCTACCCACAGTTTACAGTTACTTTAT--TTTTG---CATTTC------T---CTTTTGTTATTTACAGC----TATGAAGCTCTAC---GCCTTGTTCTCCCTTCTGGTGGGATCTCTGGCCATTSizeHit CountTotal NormTotal
No Reads
droBia1
GTT--TTCAAGAGA-------------AACCTAGCCACATATTCTTATAAATTATCAACAGATAAACAAACAT---AAATTCATTGGAAATAGGGTTAGGTTCTCCGAAAAAGACCTCCTAAA-AATGTACACC------------------------------TTAT----------------CAT------------------------------------------------------------------AGAAAACTG---------TGGTGC--------------------------CCAA--------------------------AAAGCCTGGAAAG----------CTCAGA--TTCTTCTGGAAGTTTCCT-CGATTTACAGTTCCATTGT--CAATAACCCATACA----------TCATTTTTACTTTCAGC----TATGAAGCTGTAC---GCCCTGTTCTCCCTTCTGGTGGGATCTCTGGCCATTSizeHit CountTotal NormTotal
No Reads
droTak1
CTA--AAAATA--------------------------------------AATAATTTAAAAATAAATAAATAG----------------------------------AAAAAAATTTCCCTAAATAG----------ATCAAGAGATCGTATAAT---------TTAT----------------TAT-----------------------------------AA-----------------------------------------------------------------------------------------------------------------------------------------T--CTTGTCAAAAACTTTCCTACATTTTACAGTTTCAGTTGGTCTATAATATATCCA----------CCTCTTCCATTTACAGC----TATGAAGCTGTAC---GCCCTGTTCTCCCTGCTGGTGGGATCTTTGGCCATCSizeHit CountTotal NormTotal
No Reads
droEle1
A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA-----------TTTTCTTATTTACAGC----CATGAAGCTCTAC---GCATTGCTTGCCCTTTTGGTGGGATCTTTGGCCATTSizeHit CountTotal NormTotal
No Reads
droRho1
TC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGAAGTCTCCGACAATTTACAGTTTCAGTTG--CTAAT---TATATA-----------TTTTCGTATTTACAGT----AATGAAGCTCTAC---GCCCTGTTTTCCCTGCTGGTGGGATCTTTGGCCATCSizeHit CountTotal NormTotal
No Reads
droFic1
TAT--ACATTTGGTTGCTTCTAACGTTTGCCTTGCACT---T-----------ACTTACAAATACTTAAATACTTAAAAATCATTTTTAAGATGATT--GTTCT------------------------------------------------------------------------------------------------------------------------------------TTTTTAGACATCAATATCAATAAATGTTGAGAGCAAACTA-------------TC--------------------------------------------AGCCTGAAAAA----------ACTAGA--TTCTTCTGGAAGCTTTCTCGAGTTAACAGTTATAATAG--CAATA---TATACA----------TAATTCTTATTTGCAGT----AATGAAGCTCTAC---GCCCTGTTCTCCCTGCTGGTGGGATCCCTGGCCATTSizeHit CountTotal NormTotal
No Reads
droKik1
TTCCTATT--TAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--TAATA-----TTTT-----------TTCTCCTCTTTGCAGTAAGACATGAAGCTCTAC---GCCCTGCTCTCACTTTTGGTGGGATCTCTGGCCATTSizeHit CountTotal NormTotal
No Reads
droAna3
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGAAGTTCTTC---GCCCTGCTGTCCCTGCTGCTGGGATCTCTGGCCATCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTC---GCCCTGCTGTCCCTGCT...................2411.001010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCTGGGATCTCTGGC....1811.001000001
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTC---GCCCTGCTGTCCCTG.....................1911.001001000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC---GCCCTGCTGTCCCTGCTGC.................2111.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---GCCCTGCTGTCCCTGCTGCT................2111.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTCTTC---GCCCTGCTGTCC........................2211.001000001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGCTGGGATCTCTGGC....1911.001010000
droBip1
TAT--CTCATGACT-----------------------------------TTTGGTCAAAAAACAGTC----------AATTGGTTGAATCTAATTTAAAAT--------------------------------------------------------------------------------------------------------------TCCTCTAAAATCTTCTTTTCTTAC-ACTTTCGAACCC---------------------------------------------------------AACTTAAAG-------------CCTTA----------C--------------TTTAA--CGATTATGTAACCCCCTT-CGCATTACCGTTTCCTTAT--CGCTAAT---TCTGAGCTTATCTCTGAATCCCCTTTGCAGGC-CCGATGAAGTTCTTC---GCCCTGCTGTCCCTCCTGCTGGGATCTCTGGCCATCSizeHit CountTotal NormTotal
No Reads
dp5
T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCCTTACAGCTGGACATGAAGCTCTAC---GCCCTGCTCTCCCTGCTCGTCGGCTCCCTGGCCATTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTCGTCGGCTCCCTGG.....1813.0030300000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTCGTCGGCTCCCTGGCC...2013.0030300000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTCTAC---GCCCTGCTCTCCC.......................2112.0020200000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTCTCCCTGCTCGTCGG.............2012.0020200000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATGAAGCTCTAC---GCCCTG..............................2111.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCCTGCTCGTCGGCTCCCTGGCCA..2611.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAGCTCTAC---GCCCTGCTCTCCCTGCT...................2911.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAAGCTCTAC---GCCCTGCTC...........................2211.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCCTGCTCGTCGGCTCC.........1911.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATGAAGCTCTAC---GCCCTGC.............................2111.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCTGCTCGTCGGCTCCCTGGCCAT.2511.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTCTCCCTGCTCGTCG..............1811.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTCTCCCTGCTCGTCGG.............1911.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTCCCTGCTCGTCGGCTC..........2111.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGTCGGCTCCCTGGCCA..2011.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAGCTCTAC---GCCCTGCTCTC.........................2311.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTCTCCCTGCTCGTCGGC............2111.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTCTCCCTGCTCGTCGGCTCCC........2411.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---GCCCTGCTCTCCCTGCTCGT................2111.0010100000000
T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCCTTACAGCTGGACAT.................................................2011.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTCGTCGGCTCCCTGGC....1911.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTCTAC---GCCCTGCTC...........................1911.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTAC---GCCCTGCTCTCCCTG.....................2211.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---GCCCTGCTCTCCCTGCTCGTCGGCTC..........2711.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGTCGGCTCCCTGGCCAT.2011.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATGAAGCTCTAC---GCCCTGC.............................2211.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTCGTCGGCTCCCTGG.....1911.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGCTCGTCGGCTCCCTGGC....2111.0010000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAC---GCCCTGCTCTCCCTGCTCGT................2311.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGCTCTAC---GCCCTGCTCTCCC.......................2411.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCTGCTCGTCGGCTCCCTGGCCA..2411.0010000100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTCTAC---GCCCTGCTCTCC........................2011.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTCCCTGCTCGTCGGCTCC.........2111.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGCTCTCCCTGCTCGTCGGCTCCC........2611.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTCTCCCTGCTCGTCGTT............2120.5010100000000
droPer2
T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCCTTACAGCTGGACATGAAGCTCTAC---GCCCTGCTCTCCCTGCTCGTCGGCTCCCTGGCCATTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTCGTCGGCTCCCTGG.....1913.003300000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCCTGCTCGTCGGCTCCC........2013.003300000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCCTGCTCGTCGGCTCCCT.......2112.002200000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTCTAC---GCCCTGCTCTCCCTGCA...................2711.001010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAGCTGGACATGAAGCTCT.........................................2111.001000100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAC---GCCCTGCTCTCCCTGCTCG.................2411.001010000
droWil2
C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATGAAGCTCTTT---GCCTTTGTCTCTGTGGCTGTTGTCCTATTGGCAATCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTGTTGTCCTATTGGCA...2111.00101000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTT---GCCTTTGTCTCTGTGGCTGTTGT.............2711.00100100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGTTGTCCTATTGGC....1811.00100010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCTGTGGCTGTTGTCCT..........2011.00100010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTGTTGTCCTATTGGC....1911.00101000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---GCCTTTGTCTCTGTGGC...................1811.00100010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTTT---GCCTTTGTCTCTGTGGCTGT................2711.00101000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCTCTGTGGCTGTTGTCCTATTGGCA...2811.00101000
droVir3
TA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTCTGTTTACAGCAAAACATGAAGCTCCTT---GCCCTGCTCCCCGTGCTCCTGGCCATTCTGACATTTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCCCGTGCTCCTGGCC............1912.002001000000000000100000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTCCTT---GCCCTGCTCCCCGTGCT...................2512.002000000000000000000000000000000000000000000000000000000000000002
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACATGAAGCTCCTT---GCCCTG..............................2311.001000000000000000010000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACATGAAGCTCCTT---GCCCT...............................2211.001000000000000000000000000000000000000100000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACATGAAGCTCCTT---GCC.................................1911.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAGCTCCTT---GCCCTGCTCCA.........................2311.001000000000000000000000000000000000000000000000000000000000000001
droMoj3
TCT--CT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTCTGCAGCTAGACATGAAGCTCCACTGTACCCTGTTGCCCCTGCTCCTGGGCATCCTGGCAATTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGACATGAAGCTCCACTGTACCC................................2511.001000010
droGri2
TAT--TTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTGCTTACAGCCAGCCATGAAACTGTTC---GCCCTGCTCCCCATGCTCCTGGGCTTTCTGGCCATTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGTTC---GCCCTGCTCCCCA.......................2111.00110
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTCCTGGGCTTTCTGGCCA..2211.00110
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATGAAACTGTTC---GCCCTGCTCC..........................2411.00110
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATGAAACTGTTC---GCCCT...............................1911.00110
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTTC---GCCCTGCTCCCCATGCT...................2411.00110
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTC---GCCCTGCTCCCCATGCTC..................2211.00110
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATGCTCCTGGGCTTTCTG......2011.00110
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTCCTGGGCTTTCTG......1811.00110
............................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGCCATGAAACTGTTC---GCCC................................2211.00110
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC---GCCCTGCTCCCCATGCTCCTG...............2311.00110
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTC---GCCCTGCTCCCCATGCTCCTG...............2511.00110
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCATGCTCCTGGGCTTTCTGGC....2411.00110
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTCCCCATGCTCCTGG..............1911.00110
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAACTGTTC---GCCCTG..............................1811.00110
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTCCTGGGCTTTCTGG.....1911.00110
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGCTCCTGGGCTTTCTGGC....2111.00110
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTTC---GCCCTGCTCCCCATG.....................2211.00110
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCATGAAACTGTTC---GCCCTGCTCCCCA.......................2811.00110
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATGAAACTGTTC---GCCCTGCTC...........................2311.00110
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTTC---GCCCTGCTCCCCATGCTCCTG...............2811.00110
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCTGCTCCCCATGCTCCTGGGC............2311.00110
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCATGAAACTGTTC---GCCCTG..............................2211.00110
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTCCCCATGCTCCTGGGC............2111.00110
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTTC---GCCCTGCTCCCC........................1830.33110

Generated: 05/19/2015 at 01:17 AM