ID:

dsi_13757

 Coordinate:

3l:21032730-21033050 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-4.6 -4.2 -4.1

Flybase annnotation

five_prime_UTR [3l_21032783_21034755_+]; exon [3l_21032783_21035214_+]

No Repeatable elements found

Sense Strand Reads

-------------------------------------------------------------------------------------------------------##############################################################################################################################################################################################################################################################################################################################
AGGTCCCACTAAGTGCAGCATATATATAAATGCGTTTCATCATCAGATTTGTATGTATATTGTGTCAGTTCGCCTTTGTTTTTTAATTGCAAGTCCGTCAATTAAGAAATGCTTTTACGGTGTGTGTCCAACTAATCGGGATAACCTTTCCTCGGGACGAGCCCACTGGAAGGGCTGTTTGGGAGCATAAACAATGGGAAGGGTTGCATCTGTGGGAGCGTGTATGTTTGTATACCTATACCCACACCATTGTTACGATGCACCTGGAAGGCCAAAAGAGAAATGCAGTGGAAAGTGTATTGTTGCAGTGTGTTAGCGATCCTGGCCAGCTGAGTGCCTGCGCGGATTAGGCACAGTGCTATCCGATTCTACACAAATACTGGCGATCCAGGGCTTGCCCTGGTGTCTAGACATTTTAAAA
*********************************************************************************************((((........((.((((.........)))).))........)))).**************************************************************************************************************************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 M023
head
 O002
Head
 M053
female body
 SRR618934
dsim w501 ovaries
 O001
Testis
 GSM343915
embryo
 M025
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
.............................................................................................TCCGTCAATTAAGAAATG...................................................................................................................................................................................................................................................................................................................... 18 0 1 4.00 4 0 4 0 0 0 0 0 0 0 0 0
.........................................................................................................................GTGTGTCCAACTAATCGGGA........................................................................................................................................................................................................................................................................................ 20 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................GAAGGGCTGTTTGGGAGCATA........................................................................................................................................................................................................................................ 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TTGCATCTGTGGGAGCGTGT...................................................................................................................................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................GGAAGGGCTGTTTGGGAGCAT......................................................................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................TGCAGTGTGTTAGCGATCCTG................................................................................................. 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................GAAGGCCAAAGGAGAAGTGCA...................................................................................................................................... 21 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................GCGTGTATGTTTGTATACCT........................................................................................................................................................................................ 20 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0
..............................................................................................CCGTCAATTAAGAAATGC..................................................................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................ATCCTGGCCAGCTGAGTGCCTG................................................................................. 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................GTGTGTTAGCGATCCTGGCC.............................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................................CGCGGATTAGGCACAGTG............................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................TTTCCTCGGGACGAGCCCACT.............................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................AGTCCGTCAATTAAGAAATGC..................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................................................................................CTTGCCCTGGTGTCTAGACAT....... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..................................................GTATGTATATTGTGTCAGTTCGCCTTT........................................................................................................................................................................................................................................................................................................................................................ 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................TGTTGCAGTGTGTTAGCGATCCTG................................................................................................. 24 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
.............................................................................................................TGCTTTTACGGTGTGTGTCCA................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................................TGTGGGAGCGTGTATGTTTA............................................................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TGGGAGCATAAACAATGGGAA............................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................................................................AAATACTGGCGATCCAGGGCT.......................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................................................................................TTGCCCTGGTGTCTGGACATT...... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................ATACCTATACCCACACCATTGTTACGAT.................................................................................................................................................................. 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.........................................................TATTGTGTCAGTTCG............................................................................................................................................................................................................................................................................................................................................................. 15 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
..........................................TCAGATTTGTATGTATATTGT...................................................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................GCCAGCTGAGTGCCTGCG............................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................AATGGGAAGGGTTGCATCTGT................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................TGTATTGTTGCAGTGTGTTAG......................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TGCATCTGTGGGAGCGTGTAT.................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................AAGGGCTGTTTGGGAGCATT........................................................................................................................................................................................................................................ 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................CATCTGTGGGAGCGTGTATG................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................................................................................ATACTGGCGATCCAGGGCT.......................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................GGAAGGGCTGTTTGGGAA............................................................................................................................................................................................................................................ 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................AATCGGGATAACCTTTCCTCGGGACG...................................................................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................CTCGGGACGAGCCCACTGGAA.......................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................ACTGGAAGGGCTGTTTGGG.............................................................................................................................................................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................GCCTTTGTTTTTTAATTGC........................................................................................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................GAGCATAAACAATGGGAAGG........................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TGCATCTGTGGGAGCGTGTATG................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................CATTGTTACGATGCACCTGG.......................................................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................CTTTTACGGTGTGTGTCCAAC................................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................ACTGGAAGGGCTGTTTGGGAG............................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................TGGATCGACAAAAGAGAAATGC....................................................................................................................................... 22 3 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0
................................................................GCAGTTCGCCTTTTTTTTTTAAT.............................................................................................................................................................................................................................................................................................................................................. 23 2 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................CTTTCCTCGGGTAGAGC................................................................................................................................................................................................................................................................... 17 2 12 0.33 4 0 0 0 0 0 0 0 0 0 4 0
................................................................................................................................................................................................................................................................................................................................................CCGGCGTGGATTAGGCA.................................................................... 17 2 7 0.29 2 0 0 0 0 0 0 0 0 2 0 0
.................................................................................................................................................................................................................................................................................................................................................CGGCGTGGATTAGGCA.................................................................... 16 2 20 0.25 5 0 0 0 0 0 0 0 0 5 0 0
.................................................................................................................................................CTTTCCTCGGGTAGAGCGC................................................................................................................................................................................................................................................................. 19 3 12 0.25 3 0 0 0 0 0 0 0 0 0 3 0
...................................................................................................................................................................................................GGGAAGGGTTGCATC................................................................................................................................................................................................................... 15 0 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................AGCTGAGTGCATGCGCGGA........................................................................... 19 1 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................AAGAGGTGTTTGGGAGC........................................................................................................................................................................................................................................... 17 2 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................CGATCCCGGCCAGCTGA........................................................................................ 17 1 8 0.13 1 0 0 0 0 0 0 0 0 1 0 0
.............................................................................................................................................................................................................................................................................................................................................TTGCCTGCGTGGATTAGG...................................................................... 18 2 9 0.11 1 0 0 0 0 0 0 0 0 1 0 0
...........................................................................................................................................................................................................................................................................................................................................................................CGATTCTACAGAAACTCTG....................................... 19 3 9 0.11 1 0 0 0 0 1 0 0 0 0 0 0
.................................GTTTCATCATCTGAT..................................................................................................................................................................................................................................................................................................................................................................................... 15 1 14 0.07 1 0 0 0 0 0 0 0 0 0 0 1
..................................................................................................................................................TTTCCTCGGGTAGAGC................................................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0
.................................................................................................................................................CTTTCCTCGGGTAGAGCG.................................................................................................................................................................................................................................................................. 18 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

TCCAGGGTGATTCACGTCGTATATATATTTACGCAAAGTAGTAGTCTAAACATACATATAACACAGTCAAGCGGAAACAAAAAATTAACGTTCAGGCAGTTAATTCTTTACGAAAATGCCACACACAGGTTGATTAGCCCTATTGGAAAGGAGCCCTGCTCGGGTGACCTTCCCGACAAACCCTCGTATTTGTTACCCTTCCCAACGTAGACACCCTCGCACATACAAACATATGGATATGGGTGTGGTAACAATGCTACGTGGACCTTCCGGTTTTCTCTTTACGTCACCTTTCACATAACAACGTCACACAATCGCTAGGACCGGTCGACTCACGGACGCGCCTAATCCGTGTCACGATAGGCTAAGATGTGTTTATGACCGCTAGGTCCCGAACGGGACCACAGATCTGTAAAATTTT
****************************************************************************************************************************************************************************************************************************************************************************************((((........((.((((.........)))).))........)))).********************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 O002
Head
 SRR553488
RT_0-2 hours eggs
 M024
male body		 M023
head
 M053
female body
 O001
Testis
 SRR902008
ovaries
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
............................................................................................................................................................................................................................................................................................................................................................................CTAAGATGTGTTTATGACCGC.................................... 21 0 1 2.00 2 0 0 0 0 1 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................................................ACGATAGGCTAAGATGTGTTT............................................ 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................................................TACGGTAGGCTAAGATGTGTT............................................. 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................GACACCCTCGCACATACAAAC............................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TATGCCACACACAGGTAGATT.............................................................................................................................................................................................................................................................................................. 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................................TGTCACGATAGGCTAAGATGT................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................................................TTACGATAGGCTAAGATGTG............................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................CCGTTCGCCTCACCGACGCGCCT........................................................................... 23 3 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................GTTCAGGCAGTTAATTCTTTA....................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................AGGAGCCCTGCTCGGGTGA.............................................................................................................................................................................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................................................TTGTCACGATAGGCTAAGATGT................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................................................TTCACGATAGGCTAAGATGT................................................ 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................................................AATAGGCTAAGATGTGTTTAT.......................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................................................................CCGCTAGGTCCCGAACGGGAC................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................CTCGCACATACAAACATATGGA........................................................................................................................................................................................ 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................................................CACGATAGGCTAAGATGTGTT............................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.CCAGGGTGAATCACGACG.................................................................................................................................................................................................................................................................................................................................................................................................................. 18 2 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0 0
................................................................................................................................................................................................................................................................................................................................................GGACGCGCCTAATCGG..................................................................... 16 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................GGACGCGCCTAATCG...................................................................... 15 1 6 0.50 3 0 0 3 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................................................................TTTAGGTCCGCTAGTTCCCGAA......................... 22 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................................................GGATAAGATGTGTTT............................................ 15 1 7 0.29 2 0 0 2 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................TTTGCTAGGACCGGTCGACT........................................................................................ 20 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................GAGCCCTGCTCAGCTG............................................................................................................................................................................................................................................................... 16 2 20 0.20 4 0 0 2 0 0 0 0 0 0 0 2 0 0
.........................................................................................................................................................................................ATATTTGTTACACTTCCCA......................................................................................................................................................................................................................... 19 2 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................CAATGCTACCAGGATCTT........................................................................................................................................................ 18 3 20 0.10 2 0 0 0 1 0 0 0 0 0 0 0 1 0
.........................................................................................................................................................CCCTGCTCGGCTGGCC............................................................................................................................................................................................................................................................ 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:21032680-21033100 + dsi_13757 AGGTCCCACTAAG-------TGCAGCATATAT----ATAAATGCGTTTCATCA-----TCAGATTTGTATGTATATTGTGTCAGTTCGCCTTTGTTTTTTAATTGCAAGTCCGTCAATTAAGAAATGCTTTTACGGTGTGTGTCCAACTAATCGGGATAACCT-TTCCTCGGGACGAGCCCACTGGAAGG------GCTGT-TT-------------GGGAGCATAAACAATGGGAAGGGTTGCATCTGTGG------GAGCGTGTATGTTTGTATACCTATACCCACACCATTGTTACG-ATGCACCTGGAAGGCCAAAAGAGAAATGCA--GTGGAAAGTGTATTGTTGCA--GTGTGTTAGCGAT--CC-TGGCCAGCTGAGTGC-----------CTGCGCGG-ATTAGGCACAGTGCT---ATCCGA-TTCTACACAA-ATACTGGC-GATCCAGG-GCTTGCC-----CTGGTGTCTAGACATTTT-AAAA
droSec2 scaffold_11:1436056-1436476 + AGGTCTCACTAAG-------TGCAGCATATAT----ATAAATGCGTTTCATCA-----TCAGATTTGTATGTATATTGTGTCAGTTCGCCTTTGTTTTTTAATTGCAAGTCCGTCAATTAAGAAATGCTTTTACGGTGTGTGTTCAACTAATCGGGATAACCT-TTCCTCGGGACGAGCCCACTGGAAGG------GCTGT-TT-------------GGGAGCATAAACAATGGGAAGGGTTGCATCTGTGG------GAGCGTGTATGTTTGTATACCTATACCCACACCATTGTTACG-ATGCACCTGGAAGGCCAAAAGAGAAATGCA--GTGGAAAGTGTATTCTTGCA--GTGTGTTAGCGAT--CC-TGGCCAGCTGAGTGC-----------CTGCGCGG-ATTAGGCACAGTGCT---ATCCGA-TTCTACACAA-ATACTGGC-GAACCAGG-GCTTGCC-----CTGGTGTCTAGACATTTT-AAAA
dm3 chr3L:21516280-21516700 + AGGTCCCACTAAG-------TGCAGCATATAT----ATAAATGCGTTTCATCA-----TCAGATTTGTATGTATATTGTGTCAGTTCGCCTTTGTTTTTTAATTGCTAGTCCGTCAATTAAGAAATGCTTTTACGGTGTGTGTCCAACTAATCGGGATAACCT-TTCCTCGGGACGAGCCCACTGGAAGG------GCTGT-TT-------------GGGAGCATAAACAATGGAAAGGGTTGCATCTGTGG------GAGCGTGTATGTTTGTATACGTATACCCACACCATTGTTACG-ATGCACCTGGAAGGCCAAAAGAGAAATGCA--GTGGAAAGTGTATTGTTGCA--GTGTGTTAGCGAT--CC-TGGCCAGCTGAGTGG-----------CTGCGCGG-ATTAGACACAGTGCT---ATCCGG-TTCTACACAG-ATACTGGC-GATCCAGG-GTTTGGC-----CTGGTGTCTAGACATTTT-GAAA
droEre2 scaffold_4784:21169713-21170133 + AGGTCCCACTAAG-------TGCAGCATATAT----ATAAATGCGTTTCATCA-----TCAGATTTGTATGTATATTGTGTCAGTTCGCCTTTGTTT-TTAATTGCAAGTCCATCAATAAGGAAATGGTTTTACGGTGTGTGTCGAACTTATCGGGATAAACT-CTCCTCGGGATAAGCCCACTGAAA-G------GCTGT-TT-------------GGGAGCATAAACAATGGGAAGGGTTGCATCTGTGG------GAGCGTGTATGTTTGTATACCTATACCCACACCATTGTTACG-ATGCACCTGGAAGACCAAAAGAGAAATGCA--GTGGAAAGTGTATTATTGCA--GTGTGTTAGCGAT--CC-TGGCCAGCTGAGTGA-----------ATGCAAGG-TTTAGGCATTGTGCTTAGA-CATA-GTCTACACTG-ATACTGAT-GATCCAAG-GCTTGGC-----CTGGGGTCTAGACATTTT-GAAA
droYak3 3L:19010494-19010914 - GGGTCCCACTAAG-------TGCAGCATATAT----ATAAATGCGTTTCATCA-----TCAGATTTGTATGTATATTGTGTCAGTTCGCCTTTGTTT-TTAATAGCAAGTCCGTCAATTAGGAAATGGTTTTACGGTGTGTGTCCAACTAATCGGGATAACCC-TTCCTCGGGATGAGCCCACTGGAAG-------GCTGT-TT-------------GGGAGCATAAACAATGGGAAGGGTTGCATCTGTGG------GAGCGTGTATGTTTGTATACTTATACCCATACCATTGTTACG-ATGCACCTGGAAGGCCAAAAGAGAAATGCA--GTGGAAAGTGTATTATTGCA--GTGTGTTAGCGAT--CC-TGGCCAGCTGAGTGA-----------ATGCACGG-ATTAGTTATTGTGCTTAGA-CATA-TTCTAAACAG-AAACTGAG-GATCCAAG-GCTTGGC-----GTGGTGTCTAGACATTTT-GAAA
droEug1 scf7180000409472:335367-335754 + AGGTCCCACTAAG-------TGCAGCATATAT----ATAAGTGCGTTTCATCA-----TCAGATTTGTATGTATATTGTGTCAGTTCGCCTTTGTTTTTTAATTGCACGTCCGTCAATTAAGAAATTGTTCTACGGTGTGTGTCTAACTAATCGAAATAACTA-AAACTCGGGATAGGCCTTCTGGATGG------GCAGAGTT-------------AGAAGCATAAACAATGGGAAAGGTTGCATCTGTGG------GGGCGAGTATGTTTGTATACCT----------GATTATTACG-ATGCACCTGGAAGGCCAAAAGAGAAATGCA--GTGGAAAGTG--------GA--GTGTATTAGCGAA--CCTTAGCCAGCTGAGTTGA-G-----TGGATGCACAA-ATTAAC--------------CTT-TTTAT----AG-ATCCCTGG-GGACGGAA-TTTTG------------GTCCAGACATTTT-GAAA
droBia1 scf7180000302377:1812240-1812637 - TGGTCCCACTAAG-------TGCAGCAT--------ATAAGTGCGTTTCATCA-----TCAGATTTGTATGTATATTGTGTC-GTTCGCCTTTGTTTTTTAATTGCAATCCCGACAATTAAGAATCTGTTAAACGGTGTGTGCCCAACGTCCCGGGATGAATC-TAACTCGGGATTGGCCTTCAAGATGG------CCTGATTT-------------AGAAGCATAAACAATGGGAAAGGTTGCATCTGTGG------GAGCCTGTATGTTTGTATACCTATACCTCCACGATTTTTACG-ATGCACCTGGAAGGCCAAAAGAGAAATGCA--GTGGAAAGTG--------GA--GTGTTTTAGCGAA--GCTTAGACAGCTGAGTGG-----------AGGCCCT--CTTAACCAGGGTGCCT--AACTG-TTTTC----A--ATCCTTGG-TAACCTAG-TCTTG------------GTCCAGACATTTT-GAAA
droTak1 scf7180000415388:186205-186604 + TGGTCCCACTAAG-------TGCAGCAT--------ATAAGTGCGTTTCATCA-----TCAGATTTGTATGTATATTGTGTC-GTCCGCCTTTGTTTTTTAATTGCAAGCCCGTCAATTAAGAATTGGTTTTACGGTGTGTGTCCAACTACTCGGGATGACCA-TAGCTCGGGATAGGCCTTTCAGATGG------GCTGAATT-------------AGGAGCATAAACAACGAGAAAGGTTGCATCTGTGG------GAGCGTGTATGTTTGTATACCTATACCTACGCGATTATTACG-ATGCACCTGGAAGGCCAAAAGAGAAATGCA--GTGGAAAGTG--------GA--GTGTATTAGCGAA--CCCTAGCCAGCTGAGTGG-----------ATGCACAA-ATTAACCAAAGTCCCT--AACTG-TTTTT----AG-GTCCTGGG-GAACCCAG-TCTTG------------GTCCAGACATTTT-GAAA
droEle1 scf7180000491255:2771424-2771828 - CGGTCCCACTAAG-------TGCAGCATATAT----ATAAGTGCGTTTCATCA-----TCAGATTTGTATGTATATTGTGTCAGTTCGCCTTTGTTTTTTAATTGCAAGCCCGTCAATTAGGCGATTGTTTTACGGTGTGTTTCCAACTTCTC-------TTA-AAAATCGGGATAAGCCAGCTAGATGG------TCTATTTT-------------AGAGGCATAAACAACGAAAAAGGCTGCATCTGTGGGACTGGGAGCGTGTCTGTTTGTATACCT------GAACGATTATTACG-ATGCACTTGGAAGGCCAAAAGAGAAATGCA--GTGGAAAGTG--------AA--GTGTATTAGCGAACTTT-TAGACAGCTGAGTGGATG-----TGGATGCACAG-ATTACCAGAAGTGTTT--AGCTG-ATTCA----AA-ATATTTGG-GGCTAAGA-ACTTG------------GTCCAGACATTTC-AAAA
droRho1 scf7180000779324:40076-40478 - CGGTCTTACTAAG-------TGCAGCATATAT----ATAAGTGCGTTTCATCA-----TCAGATTTGTATGTATATTGTGTCAGTTCGCCTTTGTTTTTTAATTGCAAACCCGTCAATTAAGAGATTGCTTTACGGTGTGTGTCCAACTACTC-------TTA-TATTTCGGGATAAGCCTTCTAGATGG------TATATTTT-------------CGAGGCATAAACAACGGTAAAGGCTGCATCTGTGG------GAGCGTGTCTGTTTGTATACCTA---------CATTATTACG-ATGCACTTGGAAGGCCAAAAGAGAAATGCA--GTGGAAAGTG--------AA--GTGTATTAGCGAA--CTATAGCCAGCTGAGTGGATTTGTATTGGATGAACAGAATTACCAGGAGTGATT--AGCTG-CTCCA----AAGATCTTTGG-CAATGATA-ACTTG------------ATCCAGACATTTTCTAAA
droFic1 scf7180000453831:343248-343642 + TGGTCCCACCA-G-------TGCAGCACATAT----ATAAGTGCGTTTCATCACATCGTCAGATTTGTATGTATATTGTGCCAGTTCGCCTTTGTTTTTTAATTGCAAACCCGTCAATTAAGAAATTGTTTAACGGTGTGTGTCCAGCTACTT-------TTG-TAATTCGGAATAT-TCTTGCGGACGG------GTTATTTT-------------AGAAGCATAAACAATGGGAAAGGTTGCATCTGTAG------GAGCGTGTATGTTTGTATACCT------ACACGAATATTACG-ATGCACTTGGAAGGCCAAAAGAGAAATGCA--GTGGAAAGTG--------AA--GTGTATTAGCGAA--CCTTCGTCAGCTGAGTT---------TGGATGCATAA-ATTGTTAACAGTGTTT--AAATG-ATTA-----AA-ATCCTTGG-AGAC-AAA-TCTTG------------GTCCAGACATTTT-GAAA
droKik1 scf7180000302694:381353-381542 + -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATGTTTATATACCTACAC---GATGATTATTACG-ATGCACTTGGGAGGCCAAAAGAGAAATGCGA-GTGGAAAGTG--------AA--GTGTATTAGCGAA--CCTTAGACAGCTGGGTTG-----------CTGCACAA-ATTAGCAA--GTTTTT-GAAGTA-CTTTA----AA-AACCCTCGAC-AC-AAG-ACCTGGGTGCAGAAGGCGTGCAGACATTTT-GGAA
droAna3 scaffold_13337:17116403-17116777 - CGGCCACACTGTTTTCGAGCTGCAG-----------CTAAGTGCGTTTCATCA-----TCAGATTTGTATGTATATTGTGTCCGTTCGTCTTTGTTTTTCAATTGCAAGTCCGTCAATTAACAAATGTTTCTACGGTTTG--TCCATTTAATCATTTGCTCATTTAATTC------AACCATTTAGTCGGG------------------------------------------------TGTCTATGTGTGA------GACAGTGTCTGCTTGTACATCAAT----GTATGAATATTACGGATGCACTTGGAAGGCCAAAAGAGAAATGCAAGGTGGAAAGTG--------AAGAGGGGAT-CGAAAA--TCCCAG-CAGCTGAGTTA-----------ATGTAAAA-GCCAAC----ATCCGC--AACTG-TTTTT----AG-ATTGTTAAAA-CTGC-GGA-TAAGGAACAAGATACTCGCCAATATTTC-GAAA
droBip1 scf7180000396641:604888-605263 - CGGCCACACTGTT-------TTCGAGCTGCAG----CTAAGTGCGTTTCATCA-----TCAGATTTGTATGTATATTGTGTCCGTTCGTCTTTGTTTTTCAATTGCAAGTCCGTCAATTAACAAATGTTACTACGGTTTG--TCCATTTAATCATTTAAGCATTTAATTC------AATCATTTAGTCGAG------------------------------------------------TGTCCATGTGTAA------GACAGTGATTGTTTTTACATCAAT----GTATGAATATTACGGATGCACTTGGAAGGCCAAAAGAGAAATGCAAGGTGGAAAGTA--------ATGAGGGGATCCGAAAA--TCCCAG-CAGCTGAGTTA-----------ATGTAAAA-GCCAAC----ATCCGC--AACTG-TTTTA----AG-ATTGTTAAAA-AAAC-GGT-TAAGGAATAAGATACTTGCCAATATTTT-GAAA
dp5 XR_group6:13039539-13039804 - -GGTCACACTGGT-------CGAAATATATAAGCAGCTAAGTGCGTTTCATCA-----TCAAATTTGTATGTATATTGTGTCAATTCGTCTTAGTTTTTTAATTGAGAGCTCATACGTTCATAAATAGTTTTGGGCTATCATGCCAAATAGTT------------------------------TAATAGAGTGTAACCTAT-TTAATATCGTCGCAAAGGACCATAAACAATG----------------------------TGTGTATGTATGTATGTGTATGCCTATA----TATTACG-ATGCACTTTG---TCCAAAAGAGAAATGCA--AGTGAAAATGTGTTG-----------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_88:67624-67889 - -GGTCACACTGGT-------CGAAATATATAAGCAGCTAAGTGCGTTTCATCA-----TCAAATTTGTATGTATATTGTGTCAATTCGTCTTAGTTTTTTAATTGAGAGCTCATACGTTCATAAATAGTTTTGGGCTATCATGCCAAATAGTT------------------------------TAATAGAGTGTAACCTAT-TTAATATCGTCGCAAAGGACCATAAACAATG----------------------------TGTGTATGTATGTATGTGTATGCCTATA----TATTACG-ATGCACTTTG---TCCAAAAGAGAAATGCA--AGTGAAAATGTGTTG-----------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AGGTCCCACTAAG-------TGCAGCATATAT----ATAAATGCGTTTCATCA-----TCAGATTTGTATGTATATTGTGTCAGTTCGCCTTTGTTTTTTAATTGCAAGTCCGTCAATTAAGAAATGCTTTTACGGTGTGTGTCCAACTAATCGGGATAACCT-TTCCTCGGGACGAGCCCACTGGAAGG------GCTGT-TT-------------GGGAGCATAAACAATGGGAAGGGTTGCATCTGTGG------GAGCGTGTATGTTTGTATACCTATACCCACACCATTGTTACG-ATGCACCTGGAAGGCCAAAAGAGAAATGCA--GTGGAAAGTGTATTGTTGCA--GTGTGTTAGCGAT--CC-TGGCCAGCTGAGTGC-----------CTGCGCGG-ATTAGGCACAGTGCT---ATCCGA-TTCTACACAA-ATACTGGC-GATCCAGG-GCTTGCC-----CTGGTGTCTAGACATTTT-AAAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.............................................................................................................TCCGTCAATTAAGAAATG..................................................................................................................................................................................................................................................................................................................................................................................1814.00440000000000000000
.........................................................................................................................................GTGTGTCCAACTAATCGGGA....................................................................................................................................................................................................................................................................................................................................................2012.00220000000000000000
.........................................................................................................................................................................................GAAGG------GCTGT-TT-------------GGGAGCATA...............................................................................................................................................................................................................................................................................2112.00200000000000002000
................................................................................................................................................................................................................................................TTGCATCTGTGG------GAGCGTGT.......................................................................................................................................................................................................................................2012.00200000000000002000
........................................................................................................................................................................................GGAAGG------GCTGT-TT-------------GGGAGCAT................................................................................................................................................................................................................................................................................2112.00200000000000002000
.............................................................................................................................................................................................................................................................................................................................................................TGCA--GTGTGTTAGCGAT--CC-TG..........................................................................................................................2112.00220000000000000000
....................................................................................................................................................................................................................................................................GCGTGTATGTTTGTATACCT.........................................................................................................................................................................................................................2012.00200002000000000000
..............................................................................................................CCGTCAATTAAGAAATGC.................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................AT--CC-TGGCCAGCTGAGTGC-----------CTG...............................................................................................2211.00100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................GTGTGTTAGCGAT--CC-TGGCC.......................................................................................................................2011.00110000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................CGCGG-ATTAGGCACAGTG............................................................................1811.00110000000000000000
..................................................................................................................................................................T-TTCCTCGGGACGAGCCCACT.........................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
...........................................................................................................AGTCCGTCAATTAAGAAATGC.................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCC-----CTGGTGTCTAGACAT........2111.00100000100000000000
..................................................................GTATGTATATTGTGTCAGTTCGCCTTT....................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010000000000000
..........................................................................................................................................................................................................................................................................................................................................................TGTTGCA--GTGTGTTAGCGAT--CC-TG..........................................................................................................................2411.00100100000000000000
.............................................................................................................................TGCTTTTACGGTGTGTGTCCA...............................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
.......................................................................................................................................................................................................................................................TGTGG------GAGCGTGTATGTTTA................................................................................................................................................................................................................................2011.00100000000000001000
...........................................................................................................................................................................................................T-------------GGGAGCATAAACAATGGGAA....................................................................................................................................................................................................................................................................2111.00100000000000001000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-ATACTGGC-GATCCAGG-GCT................................2111.00100001000000000000
..................................................................................................................................................................................................................................................................................ATACCTATACCCACACCATTGTTACG-AT..................................................................................................................................................................................................2811.00100010000000000000
.........................................................................TATTGTGTCAGTTCG.........................................................................................................................................................................................................................................................................................................................................................................................................................1511.00100000000001000000
..........................................................TCAGATTTGTATGTATATTGT..................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100001000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................GCCAGCTGAGTGC-----------CTGCG.............................................................................................1811.00100000100000000000
.....................................................................................................................................................................................................................................AATGGGAAGGGTTGCATCTGT.......................................................................................................................................................................................................................................................2111.00100000000000001000
.....................................................................................................................................................................................................................................................................................................................................................TGTATTGTTGCA--GTGTGTTAG.....................................................................................................................................2111.00100000000000001000
.................................................................................................................................................................................................................................................TGCATCTGTGG------GAGCGTGTAT.....................................................................................................................................................................................................................................2111.00100000000000001000
..........................................................................................................................................................................................AAGG------GCTGT-TT-------------GGGAGCATT...............................................................................................................................................................................................................................................................................2011.00100000000000001000
...................................................................................................................................................................................................................................................CATCTGTGG------GAGCGTGTATG....................................................................................................................................................................................................................................2011.00100000000000001000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTGGC-GATCCAGG-GCT................................1911.00110000000000000000
........................................................................................................................................................................................GGAAGG------GCTGT-TT-------------GGGAA...................................................................................................................................................................................................................................................................................1811.00100000000000001000
.....................................................................................................................................................AATCGGGATAACCT-TTCCTCGGGACG.................................................................................................................................................................................................................................................................................................................................2611.00100010000000000000
.......................................................................................................................................................................CTCGGGACGAGCCCACTGGAA.....................................................................................................................................................................................................................................................................................................................2111.00100000100000000000
.....................................................................................................................................................................................ACTGGAAGG------GCTGT-TT-------------GGG.....................................................................................................................................................................................................................................................................................1911.00110000000000000000
.......................................................................................GCCTTTGTTTTTTAATTGC.......................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000100000000000
...........................................................................................................................................................................................................................GAGCATAAACAATGGGAAGG..................................................................................................................................................................................................................................................................2011.00100000100000000000
.................................................................................................................................................................................................................................................TGCATCTGTGG------GAGCGTGTATG....................................................................................................................................................................................................................................2211.00100000000000001000
..................................................................................................................................................................................................................................................................................................CATTGTTACG-ATGCACCTGG..........................................................................................................................................................................................2011.00100010000000000000
...............................................................................................................................CTTTTACGGTGTGTGTCCAAC.............................................................................................................................................................................................................................................................................................................................................................2111.00100000100000000000
.....................................................................................................................................................................................ACTGGAAGG------GCTGT-TT-------------GGGAG...................................................................................................................................................................................................................................................................................2111.00110000000000000000
........................................................................................................................................................................................................................................GGGAAGGGTTGCATC..........................................................................................................................................................................................................................................................1540.25100000000001000000
droSec2
AGGTCTCACTAAG-------TGCAGCATATAT----ATAAATGCGTTTCATCA-----TCAGATTTGTATGTATATTGTGTCAGTTCGCCTTTGTTTTTTAATTGCAAGTCCGTCAATTAAGAAATGCTTTTACGGTGTGTGTTCAACTAATCGGGATAACCT-TTCCTCGGGACGAGCCCACTGGAAGG------GCTGT-TT-------------GGGAGCATAAACAATGGGAAGGGTTGCATCTGTGG------GAGCGTGTATGTTTGTATACCTATACCCACACCATTGTTACG-ATGCACCTGGAAGGCCAAAAGAGAAATGCA--GTGGAAAGTGTATTCTTGCA--GTGTGTTAGCGAT--CC-TGGCCAGCTGAGTGC-----------CTGCGCGG-ATTAGGCACAGTGCT---ATCCGA-TTCTACACAA-ATACTGGC-GAACCAGG-GCTTGCC-----CTGGTGTCTAGACATTTT-AAAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........................................................................................................................................................................................................................................................................................................................AGGCCAAAAGAGAAATGCA--GT..................................................................................................................................................................2112.0020110
.............................................................................................................................................................................................................................................GGGTTGCATCTGTGG------GAGCGTGTC......................................................................................................................................................................................................................................2411.0010100
..................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCT---ATCCGA-TTCTACACAA-.....................................................2111.0011000
.........................................................................................................................................................................................................................................................................................................................................................................................................................TTAGGCACAGTGCT---ATCCGA-................................................................2011.0011000
.....................................................................................................ATTGCAAGTCCGTCAATTAAG.......................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
..............................................................................................................................................................................................................................CATAAACAATGGGAAGGGTTG..............................................................................................................................................................................................................................................................2111.0011000
.......................................................................................................................................GTGTGTGTTCAACTAATCGGGA....................................................................................................................................................................................................................................................................................................................................................2211.0010001
..............................................................................................................................................................................CGAGCCCACTGGAAGG------GCTGT-TT-------------GGGAGC..................................................................................................................................................................................................................................................................................2911.0010100
.....................................TAAATGCGTTTCATCA-----TCAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
.............................................................................................GTTTTTTAATTGCAAGTCCGTCAAT...........................................................................................................................................................................................................................................................................................................................................................................................2511.0011000
...................................................................................................................................................................................................................................................................................................................CTGGAAGGCCAAAAGAGAAATGCA--GTG.................................................................................................................................................................2711.0011000
....................................................A-----TCAGATTTGTATGTATATTGT..................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
...............................................................................................................................................................................................................................................GTTGCATCTGTGG------GAGCGTGTATG....................................................................................................................................................................................................................................2411.0010100
....................................................................ATGTATATTGTGTCAGTTCGCC.......................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100
...............................................................................................................................................................................................................................ATAAACAATGGGAAGGGT................................................................................................................................................................................................................................................................1811.0010010
....................................................................ATGTATATTGTGTCAGTTCGCCT......................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000
dm3
AGGTCCCACTAAG-------TGCAGCATATAT----ATAAATGCGTTTCATCA-----TCAGATTTGTATGTATATTGTGTCAGTTCGCCTTTGTTTTTTAATTGCTAGTCCGTCAATTAAGAAATGCTTTTACGGTGTGTGTCCAACTAATCGGGATAACCT-TTCCTCGGGACGAGCCCACTGGAAGG------GCTGT-TT-------------GGGAGCATAAACAATGGAAAGGGTTGCATCTGTGG------GAGCGTGTATGTTTGTATACGTATACCCACACCATTGTTACG-ATGCACCTGGAAGGCCAAAAGAGAAATGCA--GTGGAAAGTGTATTGTTGCA--GTGTGTTAGCGAT--CC-TGGCCAGCTGAGTGG-----------CTGCGCGG-ATTAGACACAGTGCT---ATCCGG-TTCTACACAG-ATACTGGC-GATCCAGG-GTTTGGC-----CTGGTGTCTAGACATTTT-GAAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..............................................................................................................................GCTTTTACGGTGTGTGT..................................................................................................................................................................................................................................................................................................................................................................17110.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.............................................................................................................................................................................................................................................................................................................................................................TGCA--GTGTGTTAGCGAT--CC-TGGCC.......................................................................................................................2417.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................TACG-ATGCACCTGGAAGGCCA...................................................................................................................................................................................2116.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................AAGGGTTGCATCTGTGG------GAGC...........................................................................................................................................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
....................................................................ATGTATATTGTGTCAGTTCGC........................................................................................................................................................................................................................................................................................................................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020101000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................GAAATGCA--GTGGAAAGTG..........................................................................................................................................................1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000001000000000000000000000000000000000000001000000000000000000000000
..................................................................GTATGTATATTGTGTCAGT............................................................................................................................................................................................................................................................................................................................................................................................................................1914.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000200000000000000000000001000000000000000000000000
..................................................................GTATGTATATTGTGTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000011000000001000000000000000000000000
..........................................GCGTTTCATCA-----TCAGATTTGTATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
..............................................................................................................................GCTTTTACGGTGTGTGTC.................................................................................................................................................................................................................................................................................................................................................................1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000100000000000000000000000000000000000000
............................................................AGATTTGTATGTATATTGTGT................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000100000000000000000000100
............................................................AGATTTGTATGTATATTGTGTCAGT............................................................................................................................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000100000000000000000000000000010000000000000000000
.......................................................................................................................................................................................................GT-TT-------------GGGAGCATAAACAATGGAAAG...................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................ATGTATATTGTGTCAGTTCGCCTTTGT..................................................................................................................................................................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTACACAG-ATACTGGC-GAT.........................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................GTTGCATCTGTGG------GAGCG..........................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000100000000000000000000000000000000000000
...........................................................................................................AGTCCGTCAATTAAGAAA....................................................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................GTTGCATCTGTGG------GAGCGTG........................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................GCCTTTGTTTTTTAATTG........................................................................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................CGGGACGAGCCCACTGGAA.....................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................GTATATTGTGTCAGTTCGC........................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................ACCTGGAAGGCCAAAAGAGAAATGCA--....................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................GCGG-ATTAGACACAGTGCT---AT.....................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................ACAATGGAAAGGGTTGCA............................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................TAGCGAT--CC-TGGCCAGCTGAGT...............................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................CTAGTCCGTCAATTAAGAAAT...................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................AATGCTTTTACGGTGTGTGTC.................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000001000000000
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.....................................................................................................................................................................................................................................................................................................................................................................................................................................CT---ATCCGG-TTCTACACAG-ATA..................................................2111.0010000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................GAT--CC-TGGCCAGCTGAGTGG-----------C.................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................T-------------GGGAGCATAAACAATGGAAA....................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................TCCTCGGGACGAGCCCACTGGAAGG------GC...........................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................GAT--CC-TGGCCAGCTGAGTGG-----------CTG...............................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...........................................................................................................................AATGCTTTTACGGTGTGTGTCCA...............................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.......................................................................................................................................................................................................................................................................................................TTACG-ATGCACCTGGAAGG......................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................TATTGTTGCA--GTGTGTTAGCG...................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...................................................................................................................................................................................................................................................................................................................................................................................................G-----------CTGCGCGG-ATTAGACACAGTG............................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
..............................................................................................................................................................AACCT-TTCCTCGGGACGA................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..........................................................................................................................................TGTGTCCAACTAATCGGGATA..................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................AGCGAT--CC-TGGCCAGCTGAG................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................TGCGCGG-ATTAGACACAGTGCT---ATC....................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
................................................................TTGTATGTATATTGTGTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................GTGG-----------CTGCGCGG-ATTAGACACAGTG............................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................AATGGAAAGGGTTGCATCTGTG......................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
............................................................AGATTTGTATGTATATTGT..................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
.......................................................................................................................................................................................................................................................................................................................................................TATTGTTGCA--GTGTGTTAGCGAT--C..............................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................TAGCGAT--CC-TGGCCAGCTGAG................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................TGCTAGTCCGTCAATTAAGAAATG..................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................AGCATAAACAATGGAAAGGGTTGC.............................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................CTGCGCGG-ATTAGACACAGTC............................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................GCGCGG-ATTAGACACAGTGCT---A......................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................CTGGAAGG------GCTGT-TT-------------GGGAGC..................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................AGGCCAAAAGAGAAATGCA--GTGG................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.....................................................................................................ATTGCTAGTCCGTCAATTAAGA......................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................AGTGG-----------CTGCGCGG-ATTAGA...................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
droEre2
AGGTCCCACTAAG-------TGCAGCATATAT----ATAAATGCGTTTCATCA-----TCAGATTTGTATGTATATTGTGTCAGTTCGCCTTTGTTT-TTAATTGCAAGTCCATCAATAAGGAAATGGTTTTACGGTGTGTGTCGAACTTATCGGGATAAACT-CTCCTCGGGATAAGCCCACTGAAA-G------GCTGT-TT-------------GGGAGCATAAACAATGGGAAGGGTTGCATCTGTGG------GAGCGTGTATGTTTGTATACCTATACCCACACCATTGTTACG-ATGCACCTGGAAGACCAAAAGAGAAATGCA--GTGGAAAGTGTATTATTGCA--GTGTGTTAGCGAT--CC-TGGCCAGCTGAGTGA-----------ATGCAAGG-TTTAGGCATTGTGCTTAGA-CATA-GTCTACACTG-ATACTGAT-GATCCAAG-GCTTGGC-----CTGGGGTCTAGACATTTT-GAAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
................................................................................................................ATCAATAAGGAAATGGTT...............................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
.........................................................................................................................................................................................................................................................................................................................................................................................CAGCTGAGTGA-----------ATGCAAGG-TTTAGGC..................................................................................2611.0011000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTG-ATACTGAT-GATCCAAG-...................................2311.0011000000
............................................................................................................................................................ATAAACT-CTCCTCGGGATAAG...............................................................................................................................................................................................................................................................................................................................2111.0010000100
...........................................................................TTGTGTCAGTTCGCCTTTGTT.................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
.....................................................................TGTATATTGTGTCAGTTCGCC.......................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
.........................................................................................................................................................................................................................GGGAGCATAAACAATGGGAAGGGTTGC.............................................................................................................................................................................................................................................................2711.0011000000
.............................................................................................................................................................................................................................................................................................................................AAAAGAGAAATGCA--GTGGAAAGTG..........................................................................................................................................................2411.0010000100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAG-GCTTGGC-----CTGGGGTCT..............2011.0011000000
...........................................................................................................................................................................................................................................AAGGGTTGCATCTGTGG------GAGT...........................................................................................................................................................................................................................................2111.0010000100
............................................................AGATTTGTATGTATATTGTGTCAGT............................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000010
droYak3
GGGTCCCACTAAG-------TGCAGCATATAT----ATAAATGCGTTTCATCA-----TCAGATTTGTATGTATATTGTGTCAGTTCGCCTTTGTTT-TTAATAGCAAGTCCGTCAATTAGGAAATGGTTTTACGGTGTGTGTCCAACTAATCGGGATAACCC-TTCCTCGGGATGAGCCCACTGGAAG-------GCTGT-TT-------------GGGAGCATAAACAATGGGAAGGGTTGCATCTGTGG------GAGCGTGTATGTTTGTATACTTATACCCATACCATTGTTACG-ATGCACCTGGAAGGCCAAAAGAGAAATGCA--GTGGAAAGTGTATTATTGCA--GTGTGTTAGCGAT--CC-TGGCCAGCTGAGTGA-----------ATGCACGG-ATTAGTTATTGTGCTTAGA-CATA-TTCTAAACAG-AAACTGAG-GATCCAAG-GCTTGGC-----GTGGTGTCTAGACATTTT-GAAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................................................................................TTT-TTAATAGCAAGTCCGTC..............................................................................................................................................................................................................................................................................................................................................................................................2021.00220000000000
...............................................................................................................CGTCAATTAGGAAATGGTTTTACGGT........................................................................................................................................................................................................................................................................................................................................................................2620.50100000010000
.......................................................................................................................................................................................................................................................................................................................................................................GTTAGCGAT--CC-TGGCCAGCTGAGTGA-----------..................................................................................................2620.50100000010000
.......................................................................................................AGCAAGTCCGTCAATTAGGAAATG..................................................................................................................................................................................................................................................................................................................................................................................2420.50100010000000
..................................................................................................................................................................................................................................................................................................................................................................................................GA-----------ATGCACGG-ATTAGTTATTGT.............................................................................2220.50100000010000
........................................................................................................................................................................................................................................................................................................................AGGCCAAAAGAGAAATGCA--GTG.................................................................................................................................................................2220.50101000000000
...................................................................................................................................................................................................................................................................................................................................................................GTGTGTTAGCGAT--CC-TGGCCAGCTGAGT...............................................................................................................2820.50100000000001
....................................................................................................................ATTAGGAAATGGTTTTACGGTC.......................................................................................................................................................................................................................................................................................................................................................................2220.50100000010000
..............................................................................................................................................................................................................................................................................................ATACCATTGTTACG-ATGCACC.............................................................................................................................................................................................2120.50100100000000
..........................................................................................................................................................................................................................................................................ATGTTTGTATACTTATACC....................................................................................................................................................................................................................1920.50100100000000
................................................................................................................................................................................AGCCCACTGGAAG-------GCTGT-TT-------------GGGAG...................................................................................................................................................................................................................................................................................2520.50101000000000
....................................................................ATGTATATTGTGTCAGTTCGCCTT.....................................................................................................................................................................................................................................................................................................................................................................................................................2420.50101000000000
.......................................................................................................................................................................CTCGGGATGAGCCCACTGGAAG-------GCTG.........................................................................................................................................................................................................................................................................................................2620.50100100000000
......................................................................................................................................................................................................................................ATGGGAAGGGTTGCATCTG........................................................................................................................................................................................................................................................1920.50100001000000
.............................................................................................GTTT-TTAATAGCAAGTCCGTC..............................................................................................................................................................................................................................................................................................................................................................................................2120.50100010000000
droEug1
AGGTCCCACTAAG-------TGCAGCATATAT----ATAAGTGCGTTTCATCA-----TCAGATTTGTATGTATATTGTGTCAGTTCGCCTTTGTTTTTTAATTGCACGTCCGTCAATTAAGAAATTGTTCTACGGTGTGTGTCTAACTAATCGAAATAACTA-AAACTCGGGATAGGCCTTCTGGATGG------GCAGAGTT-------------AGAAGCATAAACAATGGGAAAGGTTGCATCTGTGG------GGGCGAGTATGTTTGTATACCT----------GATTATTACG-ATGCACCTGGAAGGCCAAAAGAGAAATGCA--GTGGAAAGTG--------GA--GTGTATTAGCGAA--CCTTAGCCAGCTGAGTTGA-G-----TGGATGCACAA-ATTAAC--------------CTT-TTTAT----AG-ATCCCTGG-GGACGGAA-TTTTG------------GTCCAGACATTTT-GAAASizeHit CountTotal NormTotal
No Reads
droBia1
TGGTCCCACTAAG-------TGCAGCAT--------ATAAGTGCGTTTCATCA-----TCAGATTTGTATGTATATTGTGTC-GTTCGCCTTTGTTTTTTAATTGCAATCCCGACAATTAAGAATCTGTTAAACGGTGTGTGCCCAACGTCCCGGGATGAATC-TAACTCGGGATTGGCCTTCAAGATGG------CCTGATTT-------------AGAAGCATAAACAATGGGAAAGGTTGCATCTGTGG------GAGCCTGTATGTTTGTATACCTATACCTCCACGATTTTTACG-ATGCACCTGGAAGGCCAAAAGAGAAATGCA--GTGGAAAGTG--------GA--GTGTTTTAGCGAA--GCTTAGACAGCTGAGTGG-----------AGGCCCT--CTTAACCAGGGTGCCT--AACTG-TTTTC----A--ATCCTTGG-TAACCTAG-TCTTG------------GTCCAGACATTTT-GAAASizeHit CountTotal NormTotal
No Reads
droTak1
TGGTCCCACTAAG-------TGCAGCAT--------ATAAGTGCGTTTCATCA-----TCAGATTTGTATGTATATTGTGTC-GTCCGCCTTTGTTTTTTAATTGCAAGCCCGTCAATTAAGAATTGGTTTTACGGTGTGTGTCCAACTACTCGGGATGACCA-TAGCTCGGGATAGGCCTTTCAGATGG------GCTGAATT-------------AGGAGCATAAACAACGAGAAAGGTTGCATCTGTGG------GAGCGTGTATGTTTGTATACCTATACCTACGCGATTATTACG-ATGCACCTGGAAGGCCAAAAGAGAAATGCA--GTGGAAAGTG--------GA--GTGTATTAGCGAA--CCCTAGCCAGCTGAGTGG-----------ATGCACAA-ATTAACCAAAGTCCCT--AACTG-TTTTT----AG-GTCCTGGG-GAACCCAG-TCTTG------------GTCCAGACATTTT-GAAASizeHit CountTotal NormTotal
No Reads
droEle1
CGGTCCCACTAAG-------TGCAGCATATAT----ATAAGTGCGTTTCATCA-----TCAGATTTGTATGTATATTGTGTCAGTTCGCCTTTGTTTTTTAATTGCAAGCCCGTCAATTAGGCGATTGTTTTACGGTGTGTTTCCAACTTCTC-------TTA-AAAATCGGGATAAGCCAGCTAGATGG------TCTATTTT-------------AGAGGCATAAACAACGAAAAAGGCTGCATCTGTGGGACTGGGAGCGTGTCTGTTTGTATACCT------GAACGATTATTACG-ATGCACTTGGAAGGCCAAAAGAGAAATGCA--GTGGAAAGTG--------AA--GTGTATTAGCGAACTTT-TAGACAGCTGAGTGGATG-----TGGATGCACAG-ATTACCAGAAGTGTTT--AGCTG-ATTCA----AA-ATATTTGG-GGCTAAGA-ACTTG------------GTCCAGACATTTC-AAAASizeHit CountTotal NormTotal
No Reads
droRho1
CGGTCTTACTAAG-------TGCAGCATATAT----ATAAGTGCGTTTCATCA-----TCAGATTTGTATGTATATTGTGTCAGTTCGCCTTTGTTTTTTAATTGCAAACCCGTCAATTAAGAGATTGCTTTACGGTGTGTGTCCAACTACTC-------TTA-TATTTCGGGATAAGCCTTCTAGATGG------TATATTTT-------------CGAGGCATAAACAACGGTAAAGGCTGCATCTGTGG------GAGCGTGTCTGTTTGTATACCTA---------CATTATTACG-ATGCACTTGGAAGGCCAAAAGAGAAATGCA--GTGGAAAGTG--------AA--GTGTATTAGCGAA--CTATAGCCAGCTGAGTGGATTTGTATTGGATGAACAGAATTACCAGGAGTGATT--AGCTG-CTCCA----AAGATCTTTGG-CAATGATA-ACTTG------------ATCCAGACATTTTCTAAASizeHit CountTotal NormTotal
No Reads
droFic1
TGGTCCCACCA-G-------TGCAGCACATAT----ATAAGTGCGTTTCATCACATCGTCAGATTTGTATGTATATTGTGCCAGTTCGCCTTTGTTTTTTAATTGCAAACCCGTCAATTAAGAAATTGTTTAACGGTGTGTGTCCAGCTACTT-------TTG-TAATTCGGAATAT-TCTTGCGGACGG------GTTATTTT-------------AGAAGCATAAACAATGGGAAAGGTTGCATCTGTAG------GAGCGTGTATGTTTGTATACCT------ACACGAATATTACG-ATGCACTTGGAAGGCCAAAAGAGAAATGCA--GTGGAAAGTG--------AA--GTGTATTAGCGAA--CCTTCGTCAGCTGAGTT---------TGGATGCATAA-ATTGTTAACAGTGTTT--AAATG-ATTA-----AA-ATCCTTGG-AGAC-AAA-TCTTG------------GTCCAGACATTTT-GAAASizeHit CountTotal NormTotal
No Reads
droKik1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATGTTTATATACCTACAC---GATGATTATTACG-ATGCACTTGGGAGGCCAAAAGAGAAATGCGA-GTGGAAAGTG--------AA--GTGTATTAGCGAA--CCTTAGACAGCTGGGTTG-----------CTGCACAA-ATTAGCAA--GTTTTT-GAAGTA-CTTTA----AA-AACCCTCGAC-AC-AAG-ACCTGGGTGCAGAAGGCGTGCAGACATTTT-GGAASizeHit CountTotal NormTotal
No Reads
droAna3
CGGCCACACTGTTTTCGAGCTGCAG-----------CTAAGTGCGTTTCATCA-----TCAGATTTGTATGTATATTGTGTCCGTTCGTCTTTGTTTTTCAATTGCAAGTCCGTCAATTAACAAATGTTTCTACGGTTTG--TCCATTTAATCATTTGCTCATTTAATTC------AACCATTTAGTCGGG------------------------------------------------TGTCTATGTGTGA------GACAGTGTCTGCTTGTACATCAAT----GTATGAATATTACGGATGCACTTGGAAGGCCAAAAGAGAAATGCAAGGTGGAAAGTG--------AAGAGGGGAT-CGAAAA--TCCCAG-CAGCTGAGTTA-----------ATGTAAAA-GCCAAC----ATCCGC--AACTG-TTTTT----AG-ATTGTTAAAA-CTGC-GGA-TAAGGAACAAGATACTCGCCAATATTTC-GAAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................................................................................................................................................................................................................................................................................ATATTACGGATGCACTTGGAA........................................................................................................................................................................................2111.001000010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA-CTGC-GGA-TAAGGAACAAGATA...................2411.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGATACTCGCCAATATTTC-G...2111.001100000
..........................................................................................................................................................................................................................................................................................................CGGATGCACTTGGAAGGCCAAAAG...............................................................................................................................................................................2411.001000010
...........................................................................................................................................................................................................................................................................................................................................AGGTGGAAAGTG--------AAGAGGGGA.........................................................................................................................................2111.001000001
.............................................................................................................................................................................................................................................................................................................ATGCACTTGGAAGGCCAAAAG...............................................................................................................................................................................2111.001000010
.......................................................................................................TGCAAGTCCGTCAATTAACAAA....................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
......................................................................GTATATTGTGTCCGTTCGTCTTT....................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAAGATACTCGCCAAT..........1911.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TT----AG-ATTGTTAAAA-CTGC-GG...................................2011.001100000
...............CGAGCTGCAG-----------CTAAGTGCGTTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000
........................................................................................................................................................................................................................................................................................................TACGGATGCACTTGGAAGG......................................................................................................................................................................................1911.001000001
.............................................................................................GTTTTTCAATTGCAAGTCCGTCAA............................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
.GGCCACACTGTTTTCGAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
droBip1
CGGCCACACTGTT-------TTCGAGCTGCAG----CTAAGTGCGTTTCATCA-----TCAGATTTGTATGTATATTGTGTCCGTTCGTCTTTGTTTTTCAATTGCAAGTCCGTCAATTAACAAATGTTACTACGGTTTG--TCCATTTAATCATTTAAGCATTTAATTC------AATCATTTAGTCGAG------------------------------------------------TGTCCATGTGTAA------GACAGTGATTGTTTTTACATCAAT----GTATGAATATTACGGATGCACTTGGAAGGCCAAAAGAGAAATGCAAGGTGGAAAGTA--------ATGAGGGGATCCGAAAA--TCCCAG-CAGCTGAGTTA-----------ATGTAAAA-GCCAAC----ATCCGC--AACTG-TTTTA----AG-ATTGTTAAAA-AAAC-GGT-TAAGGAATAAGATACTTGCCAATATTTT-GAAASizeHit CountTotal NormTotal
No Reads
dp5
-GGTCACACTGGT-------CGAAATATATAAGCAGCTAAGTGCGTTTCATCA-----TCAAATTTGTATGTATATTGTGTCAATTCGTCTTAGTTTTTTAATTGAGAGCTCATACGTTCATAAATAGTTTTGGGCTATCATGCCAAATAGTT------------------------------TAATAGAGTGTAACCTAT-TTAATATCGTCGCAAAGGACCATAAACAATG----------------------------TGTGTATGTATGTATGTGTATGCCTATA----TATTACG-ATGCACTTTG---TCCAAAAGAGAAATGCA--AGTGAAAATGTGTTG-----------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................................................................................................................AATAGTT------------------------------TAATAGAGTGTAACCT..........................................................................................................................................................................................................................................................................................................2311.0010100000000
.................................................................................................................................................AAATAGTT------------------------------TAATAGAGTGT...............................................................................................................................................................................................................................................................................................................1911.0010000001000
..............................AAGCAGCTAAGTGCGTTTCATCA-----TCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
............................................................................................................................................................................................GAGTGTAACCTAT-TTAATATCGTCGCA.........................................................................................................................................................................................................................................................................................2711.0010000000001
..............................................................................................TTTTTTAATTGAGAGCTCATACGTTCAT.......................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000000
droPer2
-GGTCACACTGGT-------CGAAATATATAAGCAGCTAAGTGCGTTTCATCA-----TCAAATTTGTATGTATATTGTGTCAATTCGTCTTAGTTTTTTAATTGAGAGCTCATACGTTCATAAATAGTTTTGGGCTATCATGCCAAATAGTT------------------------------TAATAGAGTGTAACCTAT-TTAATATCGTCGCAAAGGACCATAAACAATG----------------------------TGTGTATGTATGTATGTGTATGCCTATA----TATTACG-ATGCACTTTG---TCCAAAAGAGAAATGCA--AGTGAAAATGTGTTG-----------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................................................................................................................................................................................TAATATCGTCGCAAAGGA....................................................................................................................................................................................................................................................................................1811.001100000

Generated: 05/18/2015 at 11:56 AM