ID:

dsi_13755

Coordinate:

2r:5426093-5426342 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-39.5	-39.4	-39.3

Flybase annnotation

CDS [2r_5425897_5426070_-]; five_prime_UTR [2r_5426071_5426268_-]; exon [2r_5425897_5426268_-]

Repeatable elements

Name	Class	Family	Strand
Homo6	DNA	hAT-Pegasus	+

Sense Strand Reads

----------------------------------------------------------------------------------------------------------------------------################################################################################################################################################################################################################################## TAAATCGGAGTTGAAAACCAGTGCAAGTTGCATTGGCCCACAAATCAAAGGTACGCCTTATAAGGGAGAGTGAATCAATTGCCGAATTAGAGTGCAAAAGGTCAAAGCAGCAGCCGTGAAAAAGTGGCACACATAAATACAAATGCACACATACATACGCGTAGATGCAACACACACCTACACCTAAACACACATATATACACACACCCATCCGTGGGAGGAATAAAACACCCACAATTGCTGATTGTTTTCTGCACTCGTTATCGTTATCGCTTTCGTTTTCGCATTCATTTTCCACAGCCGCATTTTCGTGGGGCGTGCAATGTTCAGGATCCACCTCAAGATGGGTC **************************************************.((((((......))).)))..........(((....(((((((.((((.(((..((((((.((((.....((((((..............))).))).....)))).((((.((.......)).))))................................(((((............)))))..)))))).))))))).)))))))....))).......***************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	M024 male body	SRR618934 dsim w501 ovaries	M025 embryo	SRR553485 Chicharo_3 day-old ovaries	SRR553486 Makindu_3 day-old ovaries	GSM343915 embryo	M053 female body	SRR902009 testis	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs
...............................................................................................................................................................................................................................................................ACTCGTTATCGTTATCGC.............................................................................	18	0	1	3.00	3	3	0	0	0	0	0	0	0	0	0	0
.AAATCGGAGTTGAAAACC...........................................................................................................................................................................................................................................................................................................................................	18	0	1	2.00	2	0	0	0	2	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................GGCGTGCAATGTTCAGGATC................	20	0	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
..AATCGGAGTTGAAAACCAGTGCAAG...................................................................................................................................................................................................................................................................................................................................	25	0	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0
...ATCGGAGTTGAAAAC............................................................................................................................................................................................................................................................................................................................................	15	0	1	2.00	2	0	0	0	0	1	1	0	0	0	0	0
....................................................ACGCCTTATAAGGGAGAG........................................................................................................................................................................................................................................................................................	18	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................TCATTTTCCACAGCCGCAGTT..........................................	21	1	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0
........................................CAAATCAAAGGTACGCCT....................................................................................................................................................................................................................................................................................................	18	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................ATTTTCGTGGGGCGTGCAATGTTC......................	24	0	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................GGCGTGCAATGTTCAGGAT.................	19	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................CAAGATCCACCTCAAGATGGGT.	22	1	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................GTTTCGTGGGGCGTGCAATGTTCAG....................	25	1	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................GCCGCAGTTTCGTGGGGC.................................	18	1	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................GTTCAGGATCCACCTCAAGATGG...	23	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................ACGCCTTATAAGGGAGAGTG......................................................................................................................................................................................................................................................................................	20	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...ATCGGAGTTGAAAACCAGTG.......................................................................................................................................................................................................................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
TAAATCGGAGTTGAAAAC............................................................................................................................................................................................................................................................................................................................................	18	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................GCCTTATAGGGGAGA.........................................................................................................................................................................................................................................................................................	15	1	2	0.50	1	0	0	0	0	0	1	0	0	0	0	0
.....................................................................................ATTAGAGTGCTAAAGG.........................................................................................................................................................................................................................................................	16	1	5	0.40	2	0	0	0	0	0	0	0	0	0	2	0
.......................................................................................................................................................................CAACACTCACCATCACCTAA...................................................................................................................................................................	20	3	6	0.17	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................................TGATTGTTTTCTGGACCC...........................................................................................	18	2	8	0.13	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................GTGAAATGTTCAGGAC.................	16	2	20	0.10	2	0	0	0	0	0	0	0	0	0	1	1
..............................................................................................................................................................................................CACATCTTTACACACACC..............................................................................................................................................	18	2	19	0.05	1	0	0	0	0	0	0	0	1	0	0	0
........................................CGGATCAAAGGTACGCCG....................................................................................................................................................................................................................................................................................................	18	3	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0
........................................................................................................AAGCAGTAGCCGTGAT......................................................................................................................................................................................................................................	16	2	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
........................................................CTTAGAAGGGAGAATGAC....................................................................................................................................................................................................................................................................................	18	3	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

Anti-sense strand reads

ATTTAGCCTCAACTTTTGGTCACGTTCAACGTAACCGGGTGTTTAGTTTCCATGCGGAATATTCCCTCTCACTTAGTTAACGGCTTAATCTCACGTTTTCCAGTTTCGTCGTCGGCACTTTTTCACCGTGTGTATTTATGTTTACGTGTGTATGTATGCGCATCTACGTTGTGTGTGGATGTGGATTTGTGTGTATATATGTGTGTGGGTAGGCACCCTCCTTATTTTGTGGGTGTTAACGACTAACAAAAGACGTGAGCAATAGCAATAGCGAAAGCAAAAGCGTAAGTAAAAGGTGTCGGCGTAAAAGCACCCCGCACGTTACAAGTCCTAGGTGGAGTTCTACCCAG ***************************************************************************.((((((......))).)))..........(((....(((((((.((((.(((..((((((.((((.....((((((..............))).))).....)))).((((.((.......)).))))................................(((((............)))))..)))))).))))))).)))))))....))).......**************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR902009 testis	M023 head	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries	SRR553485 Chicharo_3 day-old ovaries	GSM343915 embryo	M024 male body
......................................GTGTTTAGTTTCCATGCGGAA...................................................................................................................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0
....AGCCTCAACTTTTGGTCACGT.....................................................................................................................................................................................................................................................................................................................................	21	0	1	1.00	1	0	0	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................GCGAAAGCTAAAGCGTAAG.............................................................	19	1	1	1.00	1	0	1	0	0	0	0	0	0
......................................................................................................................................TTTAGGCTTACGTGTGTATG....................................................................................................................................................................................................	20	2	3	0.33	1	1	0	0	0	0	0	0	0
..................................................................................................................................TGGATTTATGTGTACGTGTGTCT.....................................................................................................................................................................................................	23	3	5	0.20	1	0	0	0	1	0	0	0	0
................................................TCCATGCGGAACATGCCCG...........................................................................................................................................................................................................................................................................................	19	3	6	0.17	1	0	0	0	0	1	0	0	0
.......................................................................................................................................TTATGTTTACGTGGGT.......................................................................................................................................................................................................	16	1	9	0.11	1	0	0	0	0	0	1	0	0
.....................................................................................................AGCTTCGTAGTCGGCACGT......................................................................................................................................................................................................................................	19	3	17	0.06	1	0	0	0	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................GGAATCGGCGAAAAAGCAC.....................................	19	3	20	0.05	1	0	0	0	0	0	0	0	1

Generated: 04/23/2015 at 02:03 PM