ID:

dsi_13727

 Coordinate:

3l:16426442-16426556 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

five_prime_UTR [3l_16426068_16426396_+]; CDS [3l_16426397_16426441_+]; exon [3l_16426068_16426441_+]; exon [3l_16426557_16426641_+]; CDS [3l_16426557_16426641_+]; intron [3l_16426442_16426556_+]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------##################################################
GCACAATGCCCGCGGTTGAGGAAACGCAAATAACAAAGTACCTTTCGCAGGTAAGACCCGCCTATGAGTCATCATAATACGCCCATTCTTCGAAATTTTGTTCATCTGAATTTTTCCTTTCTTCTGCACGCAACGCAATTAACGATATAATGGATTTAATTTCAGTATAAGTATGTGGCTGCCACCAAGAAGGACGTTGTGGACGTGGTCACATC
**************************************************..((((...((.(((((....)))))....))....)))).((((((..((((((..(((........)))...(((.......)))............))))))..))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body		 SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
.......................................................................................................................................................................................ACCAAGAAGGACGTTGTGGACG.......... 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0
......................................................................................................................................................................ATAAGTATGTGGCTGCCACC............................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................AGTATAAGTATGTGGCTGC................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................AGTATAAGTATGTGGCTGG................................. 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0
................TGAGGAGACACAAATAACAAAGTACC............................................................................................................................................................................. 26 2 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................CAGTATAAGTATGTGGCTGCC................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................TACGTGGCTGCCACCAAGAAGGACGT.................. 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................TGCCACCAAGAAGGACGTTGTGGA............ 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................AGGACGTTGTGGACGTGGT...... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0
..................................................................................ACATTCTTCGAAACTTTGTTTA............................................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0 0 0 0
.................................................................................CACATTCTTCGAAACTTTGT.................................................................................................................. 20 2 3 0.33 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................GCAACGCAATTAATGA...................................................................... 16 1 9 0.22 2 0 0 0 0 0 2 0 0 0
...........................................................................................................................................................................................AGAAGGACGTTGTAG............. 15 1 5 0.20 1 0 0 0 0 0 0 1 0 0
..................................................................................................................................................ATAATGTATTTAATGTCAGTC................................................ 21 3 8 0.13 1 0 0 0 0 0 0 0 1 0
.........................................................................................................................................................................AGTATGTCGCTGCCA............................... 15 1 10 0.10 1 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................................GCAGTACGTTGTGGACG.......... 17 2 16 0.06 1 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

CGTGTTACGGGCGCCAACTCCTTTGCGTTTATTGTTTCATGGAAAGCGTCCATTCTGGGCGGATACTCAGTAGTATTATGCGGGTAAGAAGCTTTAAAACAAGTAGACTTAAAAAGGAAAGAAGACGTGCGTTGCGTTAATTGCTATATTACCTAAATTAAAGTCATATTCATACACCGACGGTGGTTCTTCCTGCAACACCTGCACCAGTGTAG
**************************************************..((((...((.(((((....)))))....))....)))).((((((..((((((..(((........)))...(((.......)))............))))))..))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 M024
male body		 SRR902009
testis
 M053
female body
 SRR553486
Makindu_3 day-old ovaries
................................................................................................................................GCGTTGCGTTAATTGCTATAT.................................................................. 21 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................AAGGCAGGAAGACGCGCGTTGC................................................................................ 22 3 2 0.50 1 0 1 0 0 0 0
...................................................................................CTAAGCAGCTTTGAAACAAGT............................................................................................................... 21 3 3 0.33 1 0 0 1 0 0 0
.............................................................................................................................................................................................TTTCTGCTACACCTGCACCA...... 20 2 5 0.20 1 0 0 0 1 0 0
..............................................................................................................................GCGCGTTGCGTTAATT......................................................................... 16 1 5 0.20 1 1 0 0 0 0 0
...............................................................................................................................AGCGTTGCGTTAATT......................................................................... 15 1 20 0.10 2 2 0 0 0 0 0
......................................................................................AGCAGCTTTGAAACAAGTC.............................................................................................................. 19 3 20 0.10 2 0 0 0 0 2 0
.......................................................................................................................AGAAGACGTGCGTTT................................................................................. 15 1 13 0.08 1 1 0 0 0 0 0
..................................................................................................ACAGGTAAGCTTAAAAAGGAAA............................................................................................... 22 3 13 0.08 1 0 0 0 0 0 1
..................................................................................................................AGGGAGGAAGACGTGCATT.................................................................................. 19 3 16 0.06 1 0 0 1 0 0 0

Generated: 04/24/2015 at 04:50 AM