ID:

dsi_13707

 Coordinate:

x:7527473-7527763 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-8.6 -8.0 -7.7 -7.6

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TAGCCGCATGTAGCAAGCGCGTGCGCCTCGTGCCCGTCGGCTGTCCATGTGTGAGTGTGTATTCGCATTTTCAGTAATTTCGAAAAAAAAATTTTGTATATTTGATGGCGACTCAGAAGAAACTCGCGCGTTTGTCGAAAAATCGTAGCGCGTACGTATATATCGGTGTGTAGAAATTACTAAAAATTGTGGTAAAAAATGGCAAAAATTATATAAATTTGTGTTCGAAGTGGAGTGCTAATTGCGGGGAATCCGATGCGAATGGAAAAATGTTGAAATTTATAAGATTTTAGCGCCAAAAAACGCATTTGAAAAATGTGAGACTTCAATGGACATGACGATTTTTTTTTTCATTTTTTTCGGTGGTGGAACAAAAGCGAACGAAAGAGGA
*******************************************************************************************************************************..((...((.....((((..................)))).....))....))******************************************************************************************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 SRR902009
testis
 O001
Testis
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 O002
Head
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 M053
female body
...............................................................................................................................GCGTTTGTCGAAAAATCG...................................................................................................................................................................................................................................................... 18 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................TATCGGTGTGTAGAAATTAC................................................................................................................................................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................ACTCAGAAGAAACTCGCGCGT.................................................................................................................................................................................................................................................................... 21 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0
................................................................................................................................................GTAACGCGTAGGTATCTATC................................................................................................................................................................................................................................... 20 3 2 1.50 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................TCGGCTGTCCATGTGTGAG................................................................................................................................................................................................................................................................................................................................................ 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................TTTGAAAAATGTGAGACTTT................................................................ 20 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................AATCGTAGCGCGTACG........................................................................................................................................................................................................................................... 16 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................GATGGCGACTCAGAAGAAACTC.......................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................TCGGTGTGTATAAATTAC................................................................................................................................................................................................................... 18 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................GTGAGACTTCAATGGACATGACGAT................................................. 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................................................GTGGTGGAACAAAAGCGAACGA....... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................CGTACGTATATATCGGTG............................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................CGCGTACGTATATATCGGTGTG............................................................................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................CGCGTACGTATATATCGGTG............................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................CGAAAAATCGTAGCGCGTACG........................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................GAAAAATCGTAGCGCGTA............................................................................................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................TATCGGTGTGTAGAAATTACTA................................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................GCCCGTCGGCTGTCCATG...................................................................................................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................................................................................................................................AATTTATAAGATTTTAGCGCC.............................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................TCGCGTTTGTCGAAAAATCGTAGCGCG............................................................................................................................................................................................................................................... 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................GTAGCGCGTACGTATATATCGGTGTG............................................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................GTGCTAATTGCGGGGAATCCGATGCGA.................................................................................................................................. 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.........................................................................................................................................................ACGTATATATCGGTGTGTAGAAATTAC................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................................ATAAATTTGTGTTCGAAGT................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................GTGAGACTTCAATGGACA........................................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................GATTGCGACTCAGAAGAAACTCG......................................................................................................................................................................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................GCTGTCCATGTGTGAGTG.............................................................................................................................................................................................................................................................................................................................................. 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................TGTCCATGTGTGAGTGTGTATTCGC..................................................................................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................TTTGTCGAAAAATCGTAGCGC................................................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................CGTACGTATATATCGG................................................................................................................................................................................................................................. 16 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................GTCGAAAAATCGTAGCGC................................................................................................................................................................................................................................................ 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................GAGACTTCAATGGACATGACG................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................CTAATAATTGTGGAAAAAAA................................................................................................................................................................................................ 20 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................................ATTTTTTTCGGTTTTGGAAC................... 20 2 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
......................................................................TCAGCACGTTCGAAAAAAAAATT.......................................................................................................................................................................................................................................................................................................... 23 3 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
................................................................................................................................................GTAACGCGTACGAATCTATC................................................................................................................................................................................................................................... 20 3 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
........................GCCCCGAACCCGTCGGCTGTC.......................................................................................................................................................................................................................................................................................................................................................... 21 3 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.............................GTGCCCGTCGGCTGTAGATAT..................................................................................................................................................................................................................................................................................................................................................... 21 3 4 0.25 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................TTGCAGAATGTGAGACTTTAAT............................................................. 22 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
................................................................................................................................................................TATGGGTGTGTAGAAA....................................................................................................................................................................................................................... 16 1 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................TAAGTTATTAGCGTCAAAAAA........................................................................................ 21 3 7 0.14 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................................................................AAAAGCGAACGAAAG.... 15 0 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................GAAAAATGTTGAAATT............................................................................................................... 16 0 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................ATTTGAATAATATGAGACT.................................................................. 19 2 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1
..........................................................................................................................CCCGCGCGTTGGCCGAAAAA......................................................................................................................................................................................................................................................... 20 3 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................GTCGAAAAAAAAATTTT........................................................................................................................................................................................................................................................................................................ 17 1 13 0.08 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TGGTAAGACTTGGCAAAAAT...................................................................................................................................................................................... 20 3 17 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................................................TTTCGGTAGTGGAAC................... 15 1 17 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................GTGCACGTCAGCTGTACAT....................................................................................................................................................................................................................................................................................................................................................... 19 3 18 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................TCGCCGCGTGCCGGTCGG............................................................................................................................................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
................................CCCGTCGGCTGTCGGTG...................................................................................................................................................................................................................................................................................................................................................... 17 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................GCGCGTGCGCGTCGGG....................................................................................................................................................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
................GCGCGTGCGCGTCGGGTC..................................................................................................................................................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

ATCGGCGTACATCGTTCGCGCACGCGGAGCACGGGCAGCCGACAGGTACACACTCACACATAAGCGTAAAAGTCATTAAAGCTTTTTTTTTAAAACATATAAACTACCGCTGAGTCTTCTTTGAGCGCGCAAACAGCTTTTTAGCATCGCGCATGCATATATAGCCACACATCTTTAATGATTTTTAACACCATTTTTTACCGTTTTTAATATATTTAAACACAAGCTTCACCTCACGATTAACGCCCCTTAGGCTACGCTTACCTTTTTACAACTTTAAATATTCTAAAATCGCGGTTTTTTGCGTAAACTTTTTACACTCTGAAGTTACCTGTACTGCTAAAAAAAAAAGTAAAAAAAGCCACCACCTTGTTTTCGCTTGCTTTCTCCT
*******************************************************************************************************************************************************************************************************************..((...((.....((((..................)))).....))....))******************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 O001
Testis
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 M024
male body		 SRR902008
ovaries
..............................................................................................................................................................................................................................................ATTAACGCCCCTTAGGCT....................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0
.........................................................................................................ACCGCTGGGTCTTCTCTGAGCT........................................................................................................................................................................................................................................................................ 22 3 3 0.33 1 1 0 0 0 0 0
..........................................................................................................CCGCTGGGTCTTCTCTGAGCT........................................................................................................................................................................................................................................................................ 21 3 3 0.33 1 1 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................................................AGAAAAAGCCAAAACCTTGT.................. 20 3 20 0.15 3 3 0 0 0 0 0
.......................................................................GTCATTAAGGCTTTTT................................................................................................................................................................................................................................................................................................................ 16 1 8 0.13 1 0 0 1 0 0 0
.........................................................................................................................................................................................................................................................................................................................................AGCTGTACAGATAAAAAAAAA......................................... 21 3 20 0.10 2 0 0 0 1 0 1
.............................................................AAGCGTAATAGTCAT........................................................................................................................................................................................................................................................................................................................... 15 1 10 0.10 1 1 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................GCTGTACAGATAAAAAAAAAA........................................ 21 3 20 0.10 2 0 0 0 2 0 0
.........................................................................................................ACCGCTGAGTCTTCC............................................................................................................................................................................................................................................................................... 15 1 11 0.09 1 1 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................GTACTGCTAAAAAAAAAGTAA..................................... 21 3 16 0.06 1 0 0 0 1 0 0
...................................................................................................................................................................................................................................................................................................TCGGGCTTTTTTGCGTAA.................................................................................. 18 2 16 0.06 1 0 0 0 0 1 0
....................................................................................................................................................................................................................................................................................................................................................................AAAAGCCACAACCTT.................... 15 1 20 0.05 1 0 0 1 0 0 0
.............................................................................................AACATATGAACTACAGC......................................................................................................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 1 0 0
........................................................................TCATTAAAGCTTGTT................................................................................................................................................................................................................................................................................................................ 15 1 20 0.05 1 0 0 1 0 0 0
...................................................................................................................................................................................................................................................................................................TCGGGCTTTTTTGCGCAAA................................................................................. 19 3 20 0.05 1 0 0 0 0 1 0
.........................................................................................................ACCGCTGGGTCTTCTCT............................................................................................................................................................................................................................................................................. 17 2 20 0.05 1 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:7527423-7527813 - dsi_13707 TAGCCG-------------------------------------------------------------CATGTAGCAAGCGCGTGCGCCTCGTGCC---------------CG----TCGGCTGTCCATGTGTGAGTGTGTATTCGCATTTTCAGTAATTTCGAAAAAAAAATTTTGTATATTTGATGGCGA----------------------CTCAGAAGAAACTCGCGCGTTTGTCGAAAAATCGTA-GCGC-GTACGTA--TATATCGGTGTGTAGAAATTACTAA-AAATTGT-GGTAA------AAAATGGCA--AAAATT-ATATAAATTT---------------GTGTTCGAAGTGGAGTGCTAATTGCGGGGAATCCGATGCGAATG-GAAAAATG-----TTGAAA-TTTATAAGATTTTAGCGCCAAAAAACGCATTT------GAAAAATGTGAGACTTCAATGGACATGACGA-T-TTTTTT---------------TTTC---------------A-TTTTTTTCGG-TGGTGG-AACAAA-AGC---------GAACGAA----------AGAGGA
droSec2 scaffold_44:39042-39431 - TAGCCG-------------------------------------------------------------CATGTAGCAAGCGCGTGCGCCTCGTGCC---------------CG----TCGGCTGTCCATGTGTGAGTGTGTATTCGCATTTTCAGTAATTTCGAAAAAAAAATTTTGTATATTTGATGGCGA----------------------CTCAGAAGAAACTCGCGCGTTTGTCGAAAAATCGTA-GCGC-GTACGTA--TATATCGGTGTGTAGAAATTACTAA-AAATTGT-GGGAA------AAAATGGCA--AAAATT-ATATAAATTT---------------GTGTTCGAAGTGGAGTGCTAATTGCGGGGAATCCGATGCGAATG-GAAAAATG-----TTGAAA-TTTATAAGATTTTAGCGCCAAAAAACGCATTT------GAAAAATGTGAGACTTCAATGGACATGACGA-T-TTTTTT----------------TTC---------------A-TTTTTTTCGG-TGGTGG-AACAAA-AGC---------GAACGAA----------AGAGGA
dm3 chrX:7954709-7955099 - TAGCCG-------------------------------------------------------------CATGTACCAAGCGCGTGCGCCTCGTGCC---------------CG----TCGGCTGTCCATGTGTGCGTGTGTATTCGCATTTTCAGTAATTTCGAAAAA-AAATTTTGTATATTTGATGGCGA----------------------CTCAGAAGAAACTCGCGCGTTTGTCGAAAAATCGTA-GCGC-GTACGTA--TATATCGGTGTGTAGAAATTACTAA-AAATTGT-GGTAA------AAAATGGCA--AAAATT-ATATAAATTT---------------GTGTTCGAAGTGGAGTGCTAATTGCGGGGGATCAGATGCGAATG-GAAAAATG-----TTGAAA-TTTATAAGATTTTAGCGCCAAAAAATGCATTT------GAAAAATGTGAGACTTCAATGGACATGACAA-A-TTTTTT--------------TTTTC---------------A-TTTTTTTCGG-TGGTGG-AACAAA-AGC---------GAACGAA----------AGAGGA
droEre2 scaffold_4690:16863678-16864070 - TAGCCG-------------------------------------------------------------CATGTAGCAAGCGCGTGCGCCTCGTGCC---------------AG----TCGGCTGTCCATGTGTGCGTGTGTATTCGCATTTTCAGTAATTTCGAAAAAAAAATTTTGTATATTTGATGGCGA----------------------CTCAGAAGAAACTCGCGCGTTTGTCGAAAAATCGTA-GCGC-GTACGTA--TATATCGGTGTGTAGAAATTACTAA-AAATTGT-GGTAA------AAAATGGCA--AAAATT-ATATATATTT---------------GTGTTTGGAGTGGAGTTCTAATTGCGGGGCATCCGATGCGAATG-GAAAAATA-----TTGGAA-TTTACACGATTTTAGCGCCAAAAAATGCATTT------GAAAAATGTGAGACTTCAATGGACATGACAT-T-TTTTTT-------------TTTTTC---------------A-TTTTTTTCGG-TGGTGG-AACAAA-AGC---------GAACGAA----------AGAAGA
droYak3 X:13357067-13357458 + TAGCCG-------------------------------------------------------------CATGTAGCAAGCGCGTGCGCCTCGTGCC---------------CG----TCGGCTGTCCATGTGTGTGTGTGTATTCGCATTTTCAGTAATTTCGAAAAAAAAATTTTGTATATTTGATGGCGA----------------------CTCAGAAGAAACTCGCGCGTTTGTCGAAAAATCGTA-GCGC-GTACGTA--TATATCGGTGTGTAGAAATTACTAA-AAATTGT-GGTAA------AAAATGGCA--AAAATT-ATATAAATTT---------------GTGTTCGGAGTGGAGTGCTAATTGCGGGGCATCCGTTGCGAATG-GAAAAATG-----ATGAAA-TTTGCACGATTTTAGCGCCAAAAAATGCATTT------GAAAAATGTGAGACTTCAATGGACATGACAA-T-TTTTTT--------------TTTTC---------------A-TTTTTTTCGG-TGGTGG-AACAAA-AGC---------GAACGAA----------AGAGGA
droEug1 scf7180000409064:32155-32555 - CAGCAG-------------------------------------------------------------CAGAGACAAGGCGCGTGCGCCTCGTGTC--------------TCG----ACGACTGTCCATGTGT--GTGCGTATTCGCATTTTCAGTAATTTCGAAAAAAAAATTTTGTATATTTGATGGCGACAGCGACT--------GC--TACTCACAAGAAACTCGCGCGTTTGTCGAAAAATCGTA-GCGC-GTACGTA--TATATCGGTGTGTAGAAATTACTAAAAAATTGT-GGTAA------AAAATGGCA--CAAATT-ATATAAATTT---------------GTGTTCGGTGTAAAGTGCTAATTGCGAGGCATTCAATAAATATG-GAAAAATT-----GTGAAA-TTTCCATGATTTTAGCGCCAAAAAATGCATTT------GAAAAATGTGAGACTTCAATGGACATGACAA-T-TTTTTT----------------TTC---------------A-TTTTTTTCGG-TGGTGG-AACAAA-AGC---------GAACGA-----------AGAGGA
droBia1 scf7180000301623:220672-221131 + CGGCCGGCGAGCTCGCTGGGACGCCATCTTGGAACCGCGACTGGCCGTCCCGCTCTGGCGCGCTCAGCCGA-AGC-GGAGCGTGCGCCTCGTGCC---------------CG----TCGGCCGTCAGTGTGTGCGTGTGTATTCGCGTTTTCAGTAATTTCGAAAAA--AATTTTGTATATTTGATGGCGACAGCGACG-----------TTACTCACAAGAAACTCGCGCGTTTGTCGAAAAATCGTA-GCGC-GTACGTA--TATATCGGTGTGTAGAAATTACTAA-AAATTAT-GGTAA------AAAAGGCCA--GAAATT-GCATAAATTT---------------GTGCTCGGTGTGCAGTGCTAGTGGCGGGGCATGCGAGGCGCATG-GAAAAGTG-----GCGAAA-TTTCCACTATTTTAGCGCCAAAAAATGCATTT------GAAAAATGTGAGACTTCAATGGACATGACAA-T-TTTTTT---------------TTTC---------------ATTTTTTTTCGG-TGGTGG-AACAAA-AGC---------GAACGAA----------AGAGGA
droTak1 scf7180000415141:23883-24268 - GAG-----------------------------------------------------------------------------CGTGCGCCTCGTGCC---------------CG----TCGGCCGTCCATGTGTGCGTGTGTATTCGCATTTTCAGTAATTTCGAAAAA--AATTTTGTATATTTGATGGCGACAGCGACTG----------TTACTCACAAGAAACTCGCGCGTTTGTCGAAAAATCGTA-GCGC-GTACGTA--TATATCGGTGTGTAGAAATTACTAA-AAATTAT-GGTAA------AAAACGGCA--AAAATT-ATATAAATTT---------------GTGTGCGGCGTGAAGTGCTAATTGCGGGGTACCCGATGCATATG-GAAAACTT-----GTGAAA-TTTCCACTATTTTAGCGCCAAAAAATGCATTT------GAAAAATGTGAGACTTCAATGGACATGACAA-T-TTTTTT----------------TTC---------------TTTTTTTTTCGGTTGGTGG-AACAAA-AGC---------GAACGAA----------AGAGGA
droEle1 scf7180000491006:1451185-1451595 - CAGCCA-------------------------------------------------------------CATAGAGCAGGCGCGTGCGCCTCGTGCC---------------CGACG-TCCGTTGTCCGTGTGTGCGTGTGTATTCGCATTTTCAGTAATTTCGAAAAA-AATTTTTGTATATTTGATGGCGACGGCGAC--------TGCTTTACTCACAAGAAACTCGCGCGTTTGTCGAA-AATCGTA-TCGC-GTACGTA--TATATCGGTGTGTAGAAATTACTAAAAAATTGTAGGTAA------AAAACGGCAA-AAAATTAATATAAATTT---------------GTGTTCGGTGTGATGTGCTAATTGCGGGGCATACGTTGAATATG-GAAAATTT-----GTGGAA-TTTCAACGATTTTAGCGCCAAAAAATGCTTTT------GAAAAATGTGAGACTTCAATGGACATGACAA-T-TTTTTT----------------TTCA--------------TTTTTTTTTCGG-TGGTGG-AACAAA-AGC---------GAACGAA----------AGAGGA
droRho1 scf7180000763611:266734-267139 + CAGCTG-------------------------------------------------------------CATAGAGCAGGCGCGTGCGCCTCGTGCC---------------TG----T----TGTCCGTGTGTTAGTGTGTATTCGCATTTTCAGTAATTTCGAAAAA-AACTTTTGTATATTTGATGGCGACGGCGACTG--CGACTGCTTTACTCACAAGAAACTCGCGCGTTTGTCGAA-AATCGTA-GCGC-GTACGTA--TATATCGGTGTGTAGAAATTACTAAAAAATTGT-GGTAA------AAAACGCCA--AAAATT-ATATAAATTT---------------GTGTTCGGTGTGAAGTGCTAATAGCGGGGCATACGTTGGATATG-GAAAATTT-----GTGAAA-TTCCAACGATTTTAGCGCCAAAAAATGCATTT------GAAAAATGTGAGACTTCAATGGACATGACAA-T-TTTTTT---------------CTTC----------------TTTTTTTTCGG-TGGTGG-AACAAA-AGC---------GAACGAA----------AGAGGA
droFic1 scf7180000454077:2052386-2052761 + CAACAG-------------------------------------------------------------CATAAGCCTGGCGCGTGCGCCTCGTGCC---------------CA----ACCGCTTTCCATGTGTGCGTGTGTATTCGCATTTTCAGTAATTTCGAAAAA-AATTTTTGTATATTTGATGGCGAC--------------------------AAGAAACTCGCGCGTTTGTCGAAAAACCGTA-GCGC-GTACGTA--TATATCGGTGTGTAGAAATTACTAAAAAAATAT-GGTAA------AAAATGTCA--AAAATG-ATATAAATTT---------------GTGTTCGGTGTGCAGTGCTAATCGCTGGGCGTC----------G-GA--AATT-----GTGAAA-TTTCCACAATTTTAGCGCCAAAAAATGCTTTA------TAAAAATGTGAGACTTCAATGGACATGACAA-T-TTTTTT----------------CTCA--------------ATTTTTTTTTGG-TGGTGG-AACAAA-AGC---------GAACGAA----------AGAGGA
droKik1 scf7180000302398:494856-495245 - CAGCTG-------------------------------------------------------------TATGGTGCAGGCGCGTGCGCCTCGTGCC--------------CCG----TCCGTCGTGCATGTGTGCGTGTGTATTCGCATTTTCAGTAATTTCGAAAA---ATTTTTGTATATTTGATGGCGACAGCGACGGC-------------TC----GAAAC--GCGCGTTTGTCGAAAAATCGTA-GCGC-GTACGT----ATATCGGTGTGTAGAAATTACTAAAAAATTGT-GGTAA------AAATCACCA--AAAATT-ATATAAATTT---------------GTAATCAGTGTGAAGTGCTAATTACGGGCCACCTGATGCGTATG-GAAA-TTG-----TTGGAATATTTCGCGATTTTAGCGCCAAAAAACACATTT------AAAAAATGTGAGACTTCAATGGACATGACAAAATTTTTTT---------------CTT---------------TACTTTTTTTTGG-TGGTGG-AACAAA-AGC---------GAACGA--------------AGA
droAna3 scaffold_13117:2168034-2168459 - CAGCAG-------------------------------------------------------------TAGGCAGCAGGCGCGTGCGCCTCGTGCC---------------CG----A--AATGAGCATGTGTGCGTGTGTATTCGCAT-TTCAGTAATTTCGAAAAA--ATTTTTGTATATTTGATGGCGACAGCGACGGTTCGGCTGCTTTACTCACAAGAAAC--GCGCGTTTGTCGAA-AATCGTA-GCGC-GTACGT----ATATCGGTGTGTAGAAATTACTAAAAAATGAT-GGTAA------AACTCGCCA--AAAATT-ATATAAATTT---------------GTGATCAGTGTCAAGTGCTAATTGCGGGCTATCCGATGCGTATC-GAAAAAGT---CTGAGAAA-AGG--CCGATTTTAGCGCCAAAAAATGATTTT------GAAAAATGTGAGACTTCAATGGACATGACAA-T-TTTTTT--------------TTTTCATTTTTTTT--CTTTTTTTTTTTTCGG-TGGTGG-AACAAA-AGCAA--GCAGCGAACGAA----------CGAAGA
droBip1 scf7180000395304:22552-22978 + CAGCAG-------------------------------------------------------------TAGGCAGCAGGCGCGTGCGCCTCGTGCC---------------CG----A--AATGAGCATGTGTGCGTGTGTATTCGCAT-TTCAGTAATTTCGAAAAA--ATTTTTGTATATTTGATGGCGACAGCGACGGTTCGGCTGCTTTACTCACAAGAAAC--GCGCGTTTGTCGAA-AATCGTA-GCGC-GTACGT----ATATCGGTGTGTAGAAATTACTAAAAAATGAT-GGTAA------AACTCGCCA--AAAATT-ATATAAATTT---------------GTGATCAGTGTTAAGTGCTAATTGCGGGCCATCCGATGCGTATC-GAAAAA-G-T-CCAAGAAA-A--GGCCGATTTTAGCGCCAAAAAATGATTTT------GAAAAATGTGAGACTTCAATGGACATGACTAAT--TTTTT----------------TTCTTTTTTTTT--TTTCATTTTTTTTCGG-TGGTGG-AACAAA-AGCAA--GCAGCGAACGAA----CGA---AGAAGA
dp5 XL_group1e:6592568-6593016 - CAAGCG-------------------------------------------------------------TATGGACGAGGCGCGTGCTTGTCGGGGCTGCTCTTTCGTATTCCG----CTGGCTATCTATGTGT--GTGTGTATTCGCATTTTCAGTAAATTCGAAAAA--AATTTTGTATATTTCATGGCGACAACGTCGGTCGTGCTGCTTTACTCACAAGAAAC--GCGCGCTTGTCGAAAAATCGTACGCGCGGTACGTACATATATCGGT--GTAGAAATTACTCAAAAATGTT-GGTAA------AAATCGCTA--AAAATT-ATATAAATTT---------------GTGATTAATGTGCAGTGTGTGGTGCAAGGCATGCGATGCGGC-C-AAAAAATG-----ATGAAAAATAATATGAAATTAGCGCCAA-AAATGCATTT------GAAAAATGTGAGACTTCAATGGACATGACGGAG-TTTTTT----------------TTCATTTCATTTGGGTTTTTTTTTTTTTGG-TGGTGG-AACAAA-AGCAA--------AATGAAGAAGCAGA--GGAGGA
droPer2 scaffold_21:1604775-1605222 - CAAGCG-------------------------------------------------------------TATGGACGAGGCGCGTGCTTGTCGGGGCTGCTCTTTCGTATTCCG----CTGGCTATCTATGTGT--GTGTGTATTCGCATTTTCAGTAAATTCGAAAAA--AATTTTGTATATTTCATGGCGACAACGTCGGTCGTGCTGCTTTACTCACAAGAAAC--GCGCGCTTGTCGAAAAATCGTACGCGCGGTACGTACATATATCGGT--GTAGAAATTACTCAAAAATGTT-GGTAA------AAATCGCTA--AAAATT-ATATAAATTT---------------GTGATTAATGTGCAGTGTGTGGTGCAAGGCATGCGATGCGGC-C-AAAAAATG-----ATGAAAAATAATATGAAATTAGCGCCAA-AAATGCATTT------GAAAAATGTGAGACTTCAATGGACATGACGGAG-TTTTTT----------------TTCATTTCATTTG-GGTTTTTTTTTTTTGG-TGGTGG-AACAAA-AGCAA--------AATGAAGAAGCAGA--GGAGGA
droWil2 scf2_1100000004963:2959955-2960203 - GCAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAAACCAACAAATTGT-GGTAAATGTAAAAAAGAGAATTAAAATT-ATATAAATTTTGATCACAATTGTTTGTGAACAGTGA--A----TAAA-----------------TAATG-GAAATTCT-----TTAAAA-ATACCTACAATTTAGCGCCAAAAAATAAAAATGCGAGAGATAAATGTGAGACTTCAATGGACATGACAT-T-TTTT--CATTTT----------TTTTTTTTTTTT--TTTTTTTTTTTTTTGG-TGGTGG-AACAAA--GC--AAGCAAG--------CA-------GCAGTA
droVir3 scaffold_12928:7467908-7468330 - G--CAG-------------------------------------------------------------TTG-GTGT--ACGCGTGCGC-TCG--CC---------------T-----TTCGCTGTGTATGTGTGTGTGTGTATTCGCGGTTTGAGTAATTTCGAAAA---ATTTTTGTATATTTGATGGCGACAACGACGG-----CTGCTTTACTCACAAGAAAC--GCGCGTATGTCGAA-AATTGTA-GCGC-GTACGT----ATATCGGTGTGTAGAAATTGCTTTTAAATTGT-GGTAA------AAACTAGCT--AAAATT-ATATAAATT----------------GTGC--AAA---ATGTGATAATTTATTGTAACGCGTTGTGATTGTAAATAATAATT-TTTACAA-ATACAATGAATTTTGCGCCAA-AAATGAATTT------GA-AAATGTGAGACTTCAATGGACATGACAA-T-TTTTTTCGTTTTACTTTT--------TTTTTTTT--TTTTTTTTTTTTTTGG-TGGTGGCAACGAACAGCGCAACCAAC--------CAGCACTGTAGAAGA
droMoj3 scaffold_6473:2573298-2573717 + TAG-AG-------------------------------------------------------------CAGTTGGTGTACGCGTGCGC-TCG--CC---------------T-----TTCGCTGTGTATATATGTGTGTGTATTCGCGGTTTGAGTAATTTCGAAAA---ATTTTTGTATATTTGATGGCGACTGCGACGGT-----TGCTTTACTCACAAGAAAC--GCGCGTATGTCGAA-AATTGTA-GCGC-GTACGT----ATATCGGTGTGTAAAAATTGCTTTTAAATTGT-GGTAA------AAAGTAGCT--AAAATT-ATATAAATT----------------GC-----ATATAAAATGCTAATTAAATAAAACGCGCTGTGATTTCAAATAATATT-TTAATAAA-ATGCAATGGTTTTTACGCAAAGAAATTAATTT------GA-AAATGTGAGACTTCAATGGACGTGACAA-T-TTTTTTCGTGTTACTTTTTTTTT----------------TTTTTTTTTTTGG-TGGTGGCAACGAACAGCGCAACCAGCCAACACT----------AGAAGA
droGri2 scaffold_15081:3229576-3229990 + ---------------------------------------------------------------------------------GTGCGC-TCG--CC------------TTTCGCTGCT--TTTCTGTATGTGTGTGTGTGTATTCGCATTTTGAGTAATTTCGAAATT-TTTTTTTGTATATTTGATGGCGACAACGACGG-----CTGCTTTACTCACGAGAAAC--GCGCGTATGTCGAA-AATTGTA-GCGC-TTACGAA--TATATCGGTGTGTAAAAATTGCTTTAAAATTGT-GGTAA------AAATTAGCG--AAAATT-ATATAAACT----------------GTGT-----GTAAAGTGTTTATTAAATGCAATGTGCTACGATTGCGACTCAAATTT-ATTATGC-ATACAATAAATTTTGCGCCAAAAAATGCATTT------GA-AAATGTGAGACTTCAATGGACATGACAA-T-TTTTTTCATTATACTTTT---------TTTTTTC--TTTTTTTTTTTTTTGG-TGGTGGCAACGAACAGAGCAACCAGC--------CAGCAC---TGTAGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TAGCCG-------------------------------------------------------------CATGTAGCAAGCGCGTGCGCCTCGTGCC---------------CG----TCGGCTGTCCATGTGTGAGTGTGTATTCGCATTTTCAGTAATTTCGAAAAAAAAATTTTGTATATTTGATGGCGA----------------------CTCAGAAGAAACTCGCGCGTTTGTCGAAAAATCGTA-GCGC-GTACGTA--TATATCGGTGTGTAGAAATTACTAA-AAATTGT-GGTAA------AAAATGGCA--AAAATT-ATATAAATTT---------------GTGTTCGAAGTGGAGTGCTAATTGCGGGGAATCCGATGCGAATG-GAAAAATG-----TTGAAA-TTTATAAGATTTTAGCGCCAAAAAACGCATTT------GAAAAATGTGAGACTTCAATGGACATGACGA-T-TTTTTT---------------TTTC---------------A-TTTTTTTCGG-TGGTGG-AACAAA-AGC---------GAACGAA----------AGAGGASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................................................................................................................................................................................................................GCGTTTGTCGAAAAATCG........................................................................................................................................................................................................................................................................................................................................................1812.00200000020000000000
..........................................................................................................................................................................................................................................................................TATCGGTGTGTAGAAATTAC.................................................................................................................................................................................................................................................................................................................2012.00220000000000000000
..............................................................................................................................................................................................A----------------------CTCAGAAGAAACTCGCGCGT......................................................................................................................................................................................................................................................................................................................................................................2112.00200000000000002000
....................................................................................................................TCGGCTGTCCATGTGTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT------GAAAAATGTGAGACTTT.......................................................................................................................2011.00100000000000001000
..................................................................................................................................................................................................................................................AATCGTA-GCGC-GTACG...........................................................................................................................................................................................................................................................................................................................................1611.00100000000001000000
.......................................................................................................................................................................................GATGGCGA----------------------CTCAGAAGAAACTC............................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGACTTCAATGGACATGACGA-T-......................................................................................................2511.00100100000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-TGGTGG-AACAAA-AGC---------GAACGA.................2211.00100000000000010000
.............................................................................................................................................................................................................................................................C-GTACGTA--TATATCGGTG.............................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
...........................................................................................................................................................................................................................................................CGC-GTACGTA--TATATCGGTGTG...........................................................................................................................................................................................................................................................................................................................2211.00110000000000000000
...........................................................................................................................................................................................................................................................CGC-GTACGTA--TATATCGGTG.............................................................................................................................................................................................................................................................................................................................2011.00110000000000000000
.............................................................................................................................................................................................................................................CGAAAAATCGTA-GCGC-GTACG...........................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
..............................................................................................................................................................................................................................................GAAAAATCGTA-GCGC-GTA.............................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
..........................................................................................................................................................................................................................................................................TATCGGTGTGTAGAAATTACTA...............................................................................................................................................................................................................................................................................................................2211.00100000010000000000
............................................................................................GCC---------------CG----TCGGCTGTCCATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000100000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................AA-TTTATAAGATTTTAGCGCC...........................................................................................................................................................2111.00100000001000000000
......................................................................................................................................................................................................................................................GTA-GCGC-GTACGTA--TATATCGGTGTG...........................................................................................................................................................................................................................................................................................................................2611.00100100000000000000
..............................................................................................................................................................................................................................................................................................................................................................................GTGCTAATTGCGGGGAATCCGATGCGA......................................................................................................................................................................................................2711.00100000000000100000
.................................................................................................................................................................................................................................................................ACGTA--TATATCGGTGTGTAGAAATTAC.................................................................................................................................................................................................................................................................................................................2711.00100000000000010000
.........................................................................................................................................................................................................................................................................................................................................ATAAATTT---------------GTGTTCGAAGT....................................................................................................................................................................................................................................1911.00100001000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGACTTCAATGGACA...............................................................................................................1811.00110000000000000000
.......................................................................................................................GCTGTCCATGTGTGAGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000000001000000
.........................................................................................................................TGTCCATGTGTGAGTGTGTATTCGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100001000000000000
........................................................................................................................................................................................................................................TTTGTCGAAAAATCGTA-GCGC-................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
.............................................................................................................................................................................................................................................................C-GTACGTA--TATATCGG...............................................................................................................................................................................................................................................................................................................................1611.00100000001000000000
...........................................................................................................................................................................................................................................GTCGAAAAATCGTA-GCGC-................................................................................................................................................................................................................................................................................................................................................1811.00100000010000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGACTTCAATGGACATGACG..........................................................................................................2111.00100001000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA-AGC---------GAACGAA----------AG....1570.14100000000001000000
.............................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATG-----TTGAAA-TT............................................................................................................................................................................1680.13100000000001000000
droSec2
TAGCCG-------------------------------------------------------------CATGTAGCAAGCGCGTGCGCCTCGTGCC---------------CG----TCGGCTGTCCATGTGTGAGTGTGTATTCGCATTTTCAGTAATTTCGAAAAAAAAATTTTGTATATTTGATGGCGA----------------------CTCAGAAGAAACTCGCGCGTTTGTCGAAAAATCGTA-GCGC-GTACGTA--TATATCGGTGTGTAGAAATTACTAA-AAATTGT-GGGAA------AAAATGGCA--AAAATT-ATATAAATTT---------------GTGTTCGAAGTGGAGTGCTAATTGCGGGGAATCCGATGCGAATG-GAAAAATG-----TTGAAA-TTTATAAGATTTTAGCGCCAAAAAACGCATTT------GAAAAATGTGAGACTTCAATGGACATGACGA-T-TTTTTT----------------TTC---------------A-TTTTTTTCGG-TGGTGG-AACAAA-AGC---------GAACGAA----------AGAGGASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............................................................................................................................................................................................................................................................C-GTACGTA--TATATCGGTGTG...........................................................................................................................................................................................................................................................................................................................2012.0021001
...........................................................................................................................................................................................GCGA----------------------CTCAGAAGAAACTCG...........................................................................................................................................................................................................................................................................................................................................................................1911.0010001
............................................................................................GCC---------------CG----TCGGCTGTCCATGTGTGAGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010001
...........................................................................................................................................................................................................................................................CGC-GTACGTA--TATATCGG...............................................................................................................................................................................................................................................................................................................................1811.0010001
..........................................................................................................................................................................................................................................................GCGC-GTACGTA--TATATCGGTGTG...........................................................................................................................................................................................................................................................................................................................2311.0010100
..............................................................................................................CG----TCGGCTGTCCATGTGTGAGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010001
.....................................................................................................................................................................................................................................................CGTA-GCGC-GTACGTA--TATA...................................................................................................................................................................................................................................................................................................................................1911.0011000
................................................................................................................................................................................................................................................................TACGTA--TATATCGGTGTG...........................................................................................................................................................................................................................................................................................................................1811.0010001
........................................................................AGCAAGCGCGTGCGCCTCGTGCC---------------CG----TC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010010
................................................................................................................................................................................................................................................................TACGTA--TATATCGGTGTGTAGAAATTAC.................................................................................................................................................................................................................................................................................................................2811.0011000
..GCCG-------------------------------------------------------------CATGTAGCAAGCGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
.....................................................................................................................................................................................................................................................................A--TATATCGGTGTGTAGAAA.....................................................................................................................................................................................................................................................................................................................1911.0010001
............................................................................................................................................................................................................................................................................................ACTAA-AAATTGT-GGGAA------AAAATG....................................................................................................................................................................................................................................................................................2311.0011000
dm3
TAGCCG-------------------------------------------------------------CATGTACCAAGCGCGTGCGCCTCGTGCC---------------CG----TCGGCTGTCCATGTGTGCGTGTGTATTCGCATTTTCAGTAATTTCGAAAAA-AAATTTTGTATATTTGATGGCGA----------------------CTCAGAAGAAACTCGCGCGTTTGTCGAAAAATCGTA-GCGC-GTACGTA--TATATCGGTGTGTAGAAATTACTAA-AAATTGT-GGTAA------AAAATGGCA--AAAATT-ATATAAATTT---------------GTGTTCGAAGTGGAGTGCTAATTGCGGGGGATCAGATGCGAATG-GAAAAATG-----TTGAAA-TTTATAAGATTTTAGCGCCAAAAAATGCATTT------GAAAAATGTGAGACTTCAATGGACATGACAA-A-TTTTTT--------------TTTTC---------------A-TTTTTTTCGG-TGGTGG-AACAAA-AGC---------GAACGAA----------AGAGGASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................................................................................................................................................................................................................................................CGC-GTACGTA--TATATCGGTG.............................................................................................................................................................................................................................................................................................................................20119.00190000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000010000000000000000000000000000000000000000000010000000000000000000000000000000020000000001000100000000000000000000000000000000000000020500130000000000000000
...................................................................................................................................................................................................................................GCGCGTTTGTCGAAAAATCG........................................................................................................................................................................................................................................................................................................................................................20118.00180000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000010001000000000000000000000000000000000100000020000000000000000000000000000210000000000000001100000000000001100
.....................................................................................................................................................................................................................................GCGTTTGTCGAAAAATCGTA-GCG..................................................................................................................................................................................................................................................................................................................................................23117.00170000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000100000000000000001000000000000000100000000000101000000010120000011000000000202000
..................................................................................................................................................................................................................................................AATCGTA-GCGC-GTACGTA--.......................................................................................................................................................................................................................................................................................................................................18115.00150000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000020000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000102000000000000000000000000000000000000100001100001001000000000000000000000000101001000000000000000000000000000000000
.......................................................................................................................................................................................GATGGCGA----------------------CTCAGAAGAAACTCGCG.........................................................................................................................................................................................................................................................................................................................................................................25111.00110000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000000000000000000000000000000000000000100000000000000001000000000000000000000000000100000000000000000000000000000000010
...........................................................................................................................................................................................................................................................CGC-GTACGTA--TATATCGGTGTG...........................................................................................................................................................................................................................................................................................................................22110.00100000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000010000000000000002000000010010000010000000000000000
.....................................................................................................................................................................................................................................................CGTA-GCGC-GTACGTA--TATATCGGTG.............................................................................................................................................................................................................................................................................................................................2517.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000100000000010000000
.....................................................................................................................................................................................................................................GCGTTTGTCGAAAAATCG........................................................................................................................................................................................................................................................................................................................................................1816.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000100000100000000000000000000000000000000010001000000000000000000000000000000000000
.....................................................................................................................................................................................................................................GCGTTTGTCGAAAAATCGTA-GCGC-G...............................................................................................................................................................................................................................................................................................................................................2516.0060000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000010000000000000000000000000000000000000000000000000000002000000000000000010000000000000000
..................................................................................................................................................................................................................................................AATCGTA-GCGC-GTACGTA--TATATCGGTGT............................................................................................................................................................................................................................................................................................................................2916.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................A-GCGC-GTACGTA--TATATCGGTGTG...........................................................................................................................................................................................................................................................................................................................2416.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000001001000000000000010200
...........................................................................................................................................................................................................................................GTCGAAAAATCGTA-GCGC-GTA.............................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000200000000000000000
................................................................................................................................................................................................................................................................................................................................................................GTGTTCGAAGTGGAGTGC.............................................................................................................................................................................................................................1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000002000000000000000000000000
.............................................................................................................................................................................................................................................................C-GTACGTA--TATATCGGTGTG...........................................................................................................................................................................................................................................................................................................................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000100000000000100000000000000000010000
................................................................................................................................................................................................................................................................TACGTA--TATATCGGTGTG...........................................................................................................................................................................................................................................................................................................................1814.0040000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000001000000000000010000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................A-GCGC-GTACGTA--TATATCGGTG.............................................................................................................................................................................................................................................................................................................................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000100000000000001100000000000000000000
..........................................................................................................................................................................................................................................................GCGC-GTACGTA--TATATCGGTG.............................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000001000000000001000
..........................................................................................................................................................................................................................................TGTCGAAAAATCGTA-GCGC-................................................................................................................................................................................................................................................................................................................................................1914.0040000000000000000000000000000000000000000000001000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................CGTA--TATATCGGTGTGTAG........................................................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................GATGGCGA----------------------CTCAGAAGAAACTCGCGCG.......................................................................................................................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000010000000000000000
.........................................................................................................................................................................................................................................................................ATATCGGTGTGTAGAAATTAC.................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................A--TATATCGGTGTGTAGAAA.....................................................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000001000000000000000000000
....................................................................ATGTACCAAGCGCGTGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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..........................................................................................................................................................................................................................................................GCGC-GTACGTA--TATATCGG...............................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
.......................................................................................................................GCTGTCCATGTGTGCGTGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
...........................................................................................................................................................................................................................................................................ATCGGTGTGTAGAAATTACTA...............................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
.........................................................................................................................................................................................................................................................................................................................................................................GTGGAGTGCTAATTGCGGGGG.................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................ATCGGTGTGTAGAAATTACT................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
......................................................................................................................................................................................................................................................GTA-GCGC-GTACGTA--TATATCGGTG.............................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
droEre2
TAGCCG-------------------------------------------------------------CATGTAGCAAGCGCGTGCGCCTCGTGCC---------------AG----TCGGCTGTCCATGTGTGCGTGTGTATTCGCATTTTCAGTAATTTCGAAAAAAAAATTTTGTATATTTGATGGCGA----------------------CTCAGAAGAAACTCGCGCGTTTGTCGAAAAATCGTA-GCGC-GTACGTA--TATATCGGTGTGTAGAAATTACTAA-AAATTGT-GGTAA------AAAATGGCA--AAAATT-ATATATATTT---------------GTGTTTGGAGTGGAGTTCTAATTGCGGGGCATCCGATGCGAATG-GAAAAATA-----TTGGAA-TTTACACGATTTTAGCGCCAAAAAATGCATTT------GAAAAATGTGAGACTTCAATGGACATGACAT-T-TTTTTT-------------TTTTTC---------------A-TTTTTTTCGG-TGGTGG-AACAAA-AGC---------GAACGAA----------AGAAGASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............................................................................................C---------------AG----TCGGCTGTCCATGTGTGCGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................24126.002600000026
..................................................................................................................................................................................................................................CGCGCGTTTGTCGAAAAATCGTA-GC...................................................................................................................................................................................................................................................................................................................................................2511.0011000000
droYak3
TAGCCG-------------------------------------------------------------CATGTAGCAAGCGCGTGCGCCTCGTGCC---------------CG----TCGGCTGTCCATGTGTGTGTGTGTATTCGCATTTTCAGTAATTTCGAAAAAAAAATTTTGTATATTTGATGGCGA----------------------CTCAGAAGAAACTCGCGCGTTTGTCGAAAAATCGTA-GCGC-GTACGTA--TATATCGGTGTGTAGAAATTACTAA-AAATTGT-GGTAA------AAAATGGCA--AAAATT-ATATAAATTT---------------GTGTTCGGAGTGGAGTGCTAATTGCGGGGCATCCGTTGCGAATG-GAAAAATG-----ATGAAA-TTTGCACGATTTTAGCGCCAAAAAATGCATTT------GAAAAATGTGAGACTTCAATGGACATGACAA-T-TTTTTT--------------TTTTC---------------A-TTTTTTTCGG-TGGTGG-AACAAA-AGC---------GAACGAA----------AGAGGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................................................................................................................................................................................................................................................................A--TATATCGGTGTGTAGAAATTACT................................................................................................................................................................................................................................................................................................................2411.00100000010000
.....................................................................................................................................................................................................................................................................A--TATATCGGTGTGTAGAAATTACTAA-AA...........................................................................................................................................................................................................................................................................................................2811.00100000010000
...........................................................................................................................................................................................................................................................................ATCGGTGTGTAGAAATTACTAA-A............................................................................................................................................................................................................................................................................................................2311.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCGG-TGGTGG-AACAAA-AGC---------.......................2111.00100000010000
.......................................................................................................................................................................................................................................................................................................................................ATATAAATTT---------------GTGTTCGGAGTGGAGTGCT............................................................................................................................................................................................................................2911.00100000010000
droEug1
CAGCAG-------------------------------------------------------------CAGAGACAAGGCGCGTGCGCCTCGTGTC--------------TCG----ACGACTGTCCATGTGT--GTGCGTATTCGCATTTTCAGTAATTTCGAAAAAAAAATTTTGTATATTTGATGGCGACAGCGACT--------GC--TACTCACAAGAAACTCGCGCGTTTGTCGAAAAATCGTA-GCGC-GTACGTA--TATATCGGTGTGTAGAAATTACTAAAAAATTGT-GGTAA------AAAATGGCA--CAAATT-ATATAAATTT---------------GTGTTCGGTGTAAAGTGCTAATTGCGAGGCATTCAATAAATATG-GAAAAATT-----GTGAAA-TTTCCATGATTTTAGCGCCAAAAAATGCATTT------GAAAAATGTGAGACTTCAATGGACATGACAA-T-TTTTTT----------------TTC---------------A-TTTTTTTCGG-TGGTGG-AACAAA-AGC---------GAACGA-----------AGAGGASizeHit CountTotal NormTotal
No Reads
droBia1
CGGCCGGCGAGCTCGCTGGGACGCCATCTTGGAACCGCGACTGGCCGTCCCGCTCTGGCGCGCTCAGCCGA-AGC-GGAGCGTGCGCCTCGTGCC---------------CG----TCGGCCGTCAGTGTGTGCGTGTGTATTCGCGTTTTCAGTAATTTCGAAAAA--AATTTTGTATATTTGATGGCGACAGCGACG-----------TTACTCACAAGAAACTCGCGCGTTTGTCGAAAAATCGTA-GCGC-GTACGTA--TATATCGGTGTGTAGAAATTACTAA-AAATTAT-GGTAA------AAAAGGCCA--GAAATT-GCATAAATTT---------------GTGCTCGGTGTGCAGTGCTAGTGGCGGGGCATGCGAGGCGCATG-GAAAAGTG-----GCGAAA-TTTCCACTATTTTAGCGCCAAAAAATGCATTT------GAAAAATGTGAGACTTCAATGGACATGACAA-T-TTTTTT---------------TTTC---------------ATTTTTTTTCGG-TGGTGG-AACAAA-AGC---------GAACGAA----------AGAGGASizeHit CountTotal NormTotal
No Reads
droTak1
GAG-----------------------------------------------------------------------------CGTGCGCCTCGTGCC---------------CG----TCGGCCGTCCATGTGTGCGTGTGTATTCGCATTTTCAGTAATTTCGAAAAA--AATTTTGTATATTTGATGGCGACAGCGACTG----------TTACTCACAAGAAACTCGCGCGTTTGTCGAAAAATCGTA-GCGC-GTACGTA--TATATCGGTGTGTAGAAATTACTAA-AAATTAT-GGTAA------AAAACGGCA--AAAATT-ATATAAATTT---------------GTGTGCGGCGTGAAGTGCTAATTGCGGGGTACCCGATGCATATG-GAAAACTT-----GTGAAA-TTTCCACTATTTTAGCGCCAAAAAATGCATTT------GAAAAATGTGAGACTTCAATGGACATGACAA-T-TTTTTT----------------TTC---------------TTTTTTTTTCGGTTGGTGG-AACAAA-AGC---------GAACGAA----------AGAGGASizeHit CountTotal NormTotal
No Reads
droEle1
CAGCCA-------------------------------------------------------------CATAGAGCAGGCGCGTGCGCCTCGTGCC---------------CGACG-TCCGTTGTCCGTGTGTGCGTGTGTATTCGCATTTTCAGTAATTTCGAAAAA-AATTTTTGTATATTTGATGGCGACGGCGAC--------TGCTTTACTCACAAGAAACTCGCGCGTTTGTCGAA-AATCGTA-TCGC-GTACGTA--TATATCGGTGTGTAGAAATTACTAAAAAATTGTAGGTAA------AAAACGGCAA-AAAATTAATATAAATTT---------------GTGTTCGGTGTGATGTGCTAATTGCGGGGCATACGTTGAATATG-GAAAATTT-----GTGGAA-TTTCAACGATTTTAGCGCCAAAAAATGCTTTT------GAAAAATGTGAGACTTCAATGGACATGACAA-T-TTTTTT----------------TTCA--------------TTTTTTTTTCGG-TGGTGG-AACAAA-AGC---------GAACGAA----------AGAGGASizeHit CountTotal NormTotal
No Reads
droRho1
CAGCTG-------------------------------------------------------------CATAGAGCAGGCGCGTGCGCCTCGTGCC---------------TG----T----TGTCCGTGTGTTAGTGTGTATTCGCATTTTCAGTAATTTCGAAAAA-AACTTTTGTATATTTGATGGCGACGGCGACTG--CGACTGCTTTACTCACAAGAAACTCGCGCGTTTGTCGAA-AATCGTA-GCGC-GTACGTA--TATATCGGTGTGTAGAAATTACTAAAAAATTGT-GGTAA------AAAACGCCA--AAAATT-ATATAAATTT---------------GTGTTCGGTGTGAAGTGCTAATAGCGGGGCATACGTTGGATATG-GAAAATTT-----GTGAAA-TTCCAACGATTTTAGCGCCAAAAAATGCATTT------GAAAAATGTGAGACTTCAATGGACATGACAA-T-TTTTTT---------------CTTC----------------TTTTTTTTCGG-TGGTGG-AACAAA-AGC---------GAACGAA----------AGAGGASizeHit CountTotal NormTotal
No Reads
droFic1
CAACAG-------------------------------------------------------------CATAAGCCTGGCGCGTGCGCCTCGTGCC---------------CA----ACCGCTTTCCATGTGTGCGTGTGTATTCGCATTTTCAGTAATTTCGAAAAA-AATTTTTGTATATTTGATGGCGAC--------------------------AAGAAACTCGCGCGTTTGTCGAAAAACCGTA-GCGC-GTACGTA--TATATCGGTGTGTAGAAATTACTAAAAAAATAT-GGTAA------AAAATGTCA--AAAATG-ATATAAATTT---------------GTGTTCGGTGTGCAGTGCTAATCGCTGGGCGTC----------G-GA--AATT-----GTGAAA-TTTCCACAATTTTAGCGCCAAAAAATGCTTTA------TAAAAATGTGAGACTTCAATGGACATGACAA-T-TTTTTT----------------CTCA--------------ATTTTTTTTTGG-TGGTGG-AACAAA-AGC---------GAACGAA----------AGAGGASizeHit CountTotal NormTotal
No Reads
droKik1
CAGCTG-------------------------------------------------------------TATGGTGCAGGCGCGTGCGCCTCGTGCC--------------CCG----TCCGTCGTGCATGTGTGCGTGTGTATTCGCATTTTCAGTAATTTCGAAAA---ATTTTTGTATATTTGATGGCGACAGCGACGGC-------------TC----GAAAC--GCGCGTTTGTCGAAAAATCGTA-GCGC-GTACGT----ATATCGGTGTGTAGAAATTACTAAAAAATTGT-GGTAA------AAATCACCA--AAAATT-ATATAAATTT---------------GTAATCAGTGTGAAGTGCTAATTACGGGCCACCTGATGCGTATG-GAAA-TTG-----TTGGAATATTTCGCGATTTTAGCGCCAAAAAACACATTT------AAAAAATGTGAGACTTCAATGGACATGACAAAATTTTTTT---------------CTT---------------TACTTTTTTTTGG-TGGTGG-AACAAA-AGC---------GAACGA--------------AGASizeHit CountTotal NormTotal
No Reads
droAna3
CAGCAG-------------------------------------------------------------TAGGCAGCAGGCGCGTGCGCCTCGTGCC---------------CG----A--AATGAGCATGTGTGCGTGTGTATTCGCAT-TTCAGTAATTTCGAAAAA--ATTTTTGTATATTTGATGGCGACAGCGACGGTTCGGCTGCTTTACTCACAAGAAAC--GCGCGTTTGTCGAA-AATCGTA-GCGC-GTACGT----ATATCGGTGTGTAGAAATTACTAAAAAATGAT-GGTAA------AACTCGCCA--AAAATT-ATATAAATTT---------------GTGATCAGTGTCAAGTGCTAATTGCGGGCTATCCGATGCGTATC-GAAAAAGT---CTGAGAAA-AGG--CCGATTTTAGCGCCAAAAAATGATTTT------GAAAAATGTGAGACTTCAATGGACATGACAA-T-TTTTTT--------------TTTTCATTTTTTTT--CTTTTTTTTTTTTCGG-TGGTGG-AACAAA-AGCAA--GCAGCGAACGAA----------CGAAGASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................................................................................................................TGAGCATGTGTGCGTGTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000010
............................................................................................................................................................................................CGACAGCGACGGTTCGGCT................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
..............................................................................CGCGTGCGCCTCGTGCC---------------CG----A--AATGAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
.......................................................................................................................................................................................................................................GTTTGTCGAA-AATCGTA-GCGC-................................................................................................................................................................................................................................................................................................................................................2111.001100000
...................................................................................................................................................................................ATTTGATGGCGACAGCGACG........................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
..............................................................................................................CG----A--AATGAGCATGTGTGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
droBip1
CAGCAG-------------------------------------------------------------TAGGCAGCAGGCGCGTGCGCCTCGTGCC---------------CG----A--AATGAGCATGTGTGCGTGTGTATTCGCAT-TTCAGTAATTTCGAAAAA--ATTTTTGTATATTTGATGGCGACAGCGACGGTTCGGCTGCTTTACTCACAAGAAAC--GCGCGTTTGTCGAA-AATCGTA-GCGC-GTACGT----ATATCGGTGTGTAGAAATTACTAAAAAATGAT-GGTAA------AACTCGCCA--AAAATT-ATATAAATTT---------------GTGATCAGTGTTAAGTGCTAATTGCGGGCCATCCGATGCGTATC-GAAAAA-G-T-CCAAGAAA-A--GGCCGATTTTAGCGCCAAAAAATGATTTT------GAAAAATGTGAGACTTCAATGGACATGACTAAT--TTTTT----------------TTCTTTTTTTTT--TTTCATTTTTTTTCGG-TGGTGG-AACAAA-AGCAA--GCAGCGAACGAA----CGA---AGAAGASizeHit CountTotal NormTotal
No Reads
dp5
CAAGCG-------------------------------------------------------------TATGGACGAGGCGCGTGCTTGTCGGGGCTGCTCTTTCGTATTCCG----CTGGCTATCTATGTGT--GTGTGTATTCGCATTTTCAGTAAATTCGAAAAA--AATTTTGTATATTTCATGGCGACAACGTCGGTCGTGCTGCTTTACTCACAAGAAAC--GCGCGCTTGTCGAAAAATCGTACGCGCGGTACGTACATATATCGGT--GTAGAAATTACTCAAAAATGTT-GGTAA------AAATCGCTA--AAAATT-ATATAAATTT---------------GTGATTAATGTGCAGTGTGTGGTGCAAGGCATGCGATGCGGC-C-AAAAAATG-----ATGAAAAATAATATGAAATTAGCGCCAA-AAATGCATTT------GAAAAATGTGAGACTTCAATGGACATGACGGAG-TTTTTT----------------TTCATTTCATTTGGGTTTTTTTTTTTTTGG-TGGTGG-AACAAA-AGCAA--------AATGAAGAAGCAGA--GGAGGASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................................................................CGTGCTTGTCGGGGCTGCTCTTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
...........................................................................................................................................................................................................................................GTCGAAAAATCGTACGCGCGGTACG...........................................................................................................................................................................................................................................................................................................................................2511.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCAATGGACATGACGGAG-T.....................................................................................................2111.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................GTGCAGTGTGTGGTGCAAGGC.................................................................................................................................................................................................................2111.0010100000000
..............................................................................................................................................................................................ACAACGTCGGTCGTGCTGCT.............................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
....................................................................................................................................................................................................................................CGCGCTTGTCGAAAAATC.........................................................................................................................................................................................................................................................................................................................................................1811.0010010000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGAGACTTCAATGGACATGACGGA........................................................................................................2711.0010000000001
...........................................................................................................................................................................................................................................GTCGAAAAATCGTACGCGCGG...............................................................................................................................................................................................................................................................................................................................................2111.0010100000000
................................................................................................................................................................................................................................................................................................................................................................GTGATTAATGTGCAGTGTGT...........................................................................................................................................................................................................................2011.0010100000000
...............................................................................................................................................................................................................................AC--GCGCGCTTGTCGAAAAATC.........................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
....................................................................................................................................................................................................................ACTCACAAGAAAC--GCGCGCTTGTCGAAA.............................................................................................................................................................................................................................................................................................................................................................2811.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTGG-TGGTGG-AACAAA-...................................2111.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................CAAGGCATGCGATGCGGC-C-..................................................................................................................................................................................................1911.0010100000000
.................................................................................................................................................................................................................TTTACTCACAAGAAAC--GCGCGCTTGT..................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
.......................................................................................................................................................................................................................................GCTTGTCGAAAAATCGTACGCGCG................................................................................................................................................................................................................................................................................................................................................2411.0010000001000
.....G-------------------------------------------------------------TATGGACGAGGCGCGTGCTTGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010000000
........................................................................................................................................................................................................................................................................................................................................................................TGTGCAGTGTGTGGTGCAAGG..................................................................................................................................................................................................................2111.0010000001000
............................................................................................................................................................................................................................................................................................................................................................................CAGTGTGTGGTGCAAGGCA................................................................................................................................................................................................................1911.0010100000000
droPer2
CAAGCG-------------------------------------------------------------TATGGACGAGGCGCGTGCTTGTCGGGGCTGCTCTTTCGTATTCCG----CTGGCTATCTATGTGT--GTGTGTATTCGCATTTTCAGTAAATTCGAAAAA--AATTTTGTATATTTCATGGCGACAACGTCGGTCGTGCTGCTTTACTCACAAGAAAC--GCGCGCTTGTCGAAAAATCGTACGCGCGGTACGTACATATATCGGT--GTAGAAATTACTCAAAAATGTT-GGTAA------AAATCGCTA--AAAATT-ATATAAATTT---------------GTGATTAATGTGCAGTGTGTGGTGCAAGGCATGCGATGCGGC-C-AAAAAATG-----ATGAAAAATAATATGAAATTAGCGCCAA-AAATGCATTT------GAAAAATGTGAGACTTCAATGGACATGACGGAG-TTTTTT----------------TTCATTTCATTTG-GGTTTTTTTTTTTTGG-TGGTGG-AACAAA-AGCAA--------AATGAAGAAGCAGA--GGAGGASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................................................................................................................................................................................................................................................................................GTAGAAATTACTCAAAAA..........................................................................................................................................................................................................................................................................................................1811.001100000
.....................................................................................................................................................................................................................................................................ACATATATCGGT--GTAGAAA.....................................................................................................................................................................................................................................................................................................................1911.001001000
....................................................................................................................................................................................................................ACTCACAAGAAAC--GCGCGCT.....................................................................................................................................................................................................................................................................................................................................................................2011.001010000
droWil2
GCAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAAACCAACAAATTGT-GGTAAATGTAAAAAAGAGAATTAAAATT-ATATAAATTTTGATCACAATTGTTTGTGAACAGTGA--A----TAAA-----------------TAATG-GAAATTCT-----TTAAAA-ATACCTACAATTTAGCGCCAAAAAATAAAAATGCGAGAGATAAATGTGAGACTTCAATGGACATGACAT-T-TTTT--CATTTT----------TTTTTTTTTTTT--TTTTTTTTTTTTTTGG-TGGTGG-AACAAA--GC--AAGCAAG--------CA-------GCAGTASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................................................................................................................................................................................................................................................................................................GTAAATGTAAAAAAGAGAATTAAAATT-........................................................................................................................................................................................................................................................................2711.00100010
...............................................................................................................................................................................................................................................................................................................................................TTTGATCACAATTGTTTGTGA...........................................................................................................................................................................................................................................2111.00101000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGAGACTTCAATGGACATG.............................................................................................................2211.00101000
.....................................................................................................................................................................................................................................................................................................................................................................CAGTGA--A----TAAA-----------------TAATG-GAAATT............................................................................................................................................................................................2211.00100010
.....................................................................................................................................................................................................................................................................................................................................................CACAATTGTTTGTGAACAGTGA--..................................................................................................................................................................................................................................2211.00100010
..................................................................................................................................................................................................................................................................................................................................................................GAACAGTGA--A----TAAA-----------------TAATG-G.................................................................................................................................................................................................2011.00100010
............................................................................................................................................................................................................................................................................................................TAAATGTAAAAAAGAGAATTAAAATT-........................................................................................................................................................................................................................................................................2611.00100010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGCGAGAGATAAATGTG..............................................................................................................................2011.00100100
droVir3
G--CAG-------------------------------------------------------------TTG-GTGT--ACGCGTGCGC-TCG--CC---------------T-----TTCGCTGTGTATGTGTGTGTGTGTATTCGCGGTTTGAGTAATTTCGAAAA---ATTTTTGTATATTTGATGGCGACAACGACGG-----CTGCTTTACTCACAAGAAAC--GCGCGTATGTCGAA-AATTGTA-GCGC-GTACGT----ATATCGGTGTGTAGAAATTGCTTTTAAATTGT-GGTAA------AAACTAGCT--AAAATT-ATATAAATT----------------GTGC--AAA---ATGTGATAATTTATTGTAACGCGTTGTGATTGTAAATAATAATT-TTTACAA-ATACAATGAATTTTGCGCCAA-AAATGAATTT------GA-AAATGTGAGACTTCAATGGACATGACAA-T-TTTTTTCGTTTTACTTTT--------TTTTTTTT--TTTTTTTTTTTTTTGG-TGGTGGCAACGAACAGCGCAACCAAC--------CAGCACTGTAGAAGASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................................................................................................................................................................................................CGG-----CTGCTTTACTCACAAGAAAC--............................................................................................................................................................................................................................................................................................................................................................................2313.003030000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................GT----ATATCGGTGTGTAGAAA.....................................................................................................................................................................................................................................................................................................................1912.002000000200000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................GTATGTCGAA-AATTGTA-GCGC-................................................................................................................................................................................................................................................................................................................................................2112.002000000000000000000000000000000000000100000000000000000000001000
....................................................................................................................................................................................................................................CGCGTATGTCGAA-AATTGTA-GCGC-................................................................................................................................................................................................................................................................................................................................................2411.001010000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................GTATGTCGAA-AATTGTA-GCGC-GTA.............................................................................................................................................................................................................................................................................................................................................2411.001000000000001000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................AAAC--GCGCGTATGTCGAA-AATTG........................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000001000000000000000000000000
.....................................................................................................................................................................................................CGG-----CTGCTTTACTCACAAGAAAC--G...........................................................................................................................................................................................................................................................................................................................................................................2411.001100000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAATGAATTTTGCGCCAA-AA......................................................................................................................................................2311.001000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................................................................................................GT----ATATCGGTGTGTAGAAATTGCT................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000010
....................................................................................................................................................................................................................ACTCACAAGAAAC--GCGCGTA.....................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000010000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................GCGC-GTACGT----ATATCGGTG.............................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000010
....................................................................................................................................................................................TTTGATGGCGACAACGACGG-----C.................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000010000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................GTACGT----ATATCGGTGTGTAGAAATTGCT................................................................................................................................................................................................................................................................................................................2811.001000000000000000001000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTT------GA-AAATGTGAGACTTC.......................................................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAA-AAATGAATTT------GA-AAATGTGAGACTT........................................................................................................................3011.001000000000000000000000000000000000000000000000000100000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGACATGACAA-T-TTTTTT................................................................................................2111.001000000000000000000000000100000000000000000000000000000000000000
...................................................................................................................................................................................ATTTGATGGCGACAACGACGG-----CTGCTT............................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000000000010000000000000000000
.......................................................................................................................................TGTGTATTCGCGGTTTGAGTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000100000000000000000000000000000000
....................................................................................................................................................................................................................................CGCGTATGTCGAA-AATTG........................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000001000000000000000000000000000000000000
.........................................................................................................................................................................................................................................ATGTCGAA-AATTGTA-GCGC-................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000001000
..................................................................................................................................................................................................................................................................CGT----ATATCGGTGTGT..........................................................................................................................................................................................................................................................................................................................1511.001000000000000000000000000000000000000000000000000100000000000000
..............................................................................................C---------------T-----TTCGCTGTGTATGTGTGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
........................................................................................................................................................................................................................................TATGTCGAA-AATTGTA-GCGC-G...............................................................................................................................................................................................................................................................................................................................................2111.001000000010000000000000000000000000000000000000000000000000000000
.....................................................................................GC-TCG--CC---------------T-----TTCGCTGTGTATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000010000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGGCAACGAACAGCGCAA............................2111.001000000000000000000000000000000010000000000000000000000000000000
..........................................................................................................................................................................................................................................................................TATCGGTGTGTAGAAATTGCT................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000100000000000000000000000000000
.....................................................................................................................TCGCTGTGTATGTGTGTGTGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2150.201000000000000000000000000000001000000000000000000000000000000000
droMoj3
TAG-AG-------------------------------------------------------------CAGTTGGTGTACGCGTGCGC-TCG--CC---------------T-----TTCGCTGTGTATATATGTGTGTGTATTCGCGGTTTGAGTAATTTCGAAAA---ATTTTTGTATATTTGATGGCGACTGCGACGGT-----TGCTTTACTCACAAGAAAC--GCGCGTATGTCGAA-AATTGTA-GCGC-GTACGT----ATATCGGTGTGTAAAAATTGCTTTTAAATTGT-GGTAA------AAAGTAGCT--AAAATT-ATATAAATT----------------GC-----ATATAAAATGCTAATTAAATAAAACGCGCTGTGATTTCAAATAATATT-TTAATAAA-ATGCAATGGTTTTTACGCAAAGAAATTAATTT------GA-AAATGTGAGACTTCAATGGACGTGACAA-T-TTTTTTCGTGTTACTTTTTTTTT----------------TTTTTTTTTTTGG-TGGTGGCAACGAACAGCGCAACCAGCCAACACT----------AGAAGASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TTTTTTCGTGTTACTTTTTT..................................................................................2111.001000010
...........................................................................................................................................TATTCGCGGTTTGAGTAATTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
................................................................................................................................................................................................................................................................................................TTAAATTGT-GGTAA------AAAGTAGCT--AAAA...........................................................................................................................................................................................................................................................................2711.001000001
...............................................................................................................................................................................................................................................................GTACGT----ATATCGGTGTGT..........................................................................................................................................................................................................................................................................................................................1811.001000001
....................................................................................................................................................................................................................ACTCACAAGAAAC--GCGCGTATGTCGAA-.............................................................................................................................................................................................................................................................................................................................................................2711.001000001
........................................................................................................................................................................................................................ACAAGAAAC--GCGCGTATG...................................................................................................................................................................................................................................................................................................................................................................1811.001100000
......................................................................................................................................................................................................................TCACAAGAAAC--GCGCGTATGTC.................................................................................................................................................................................................................................................................................................................................................................2211.001000010
.................................................................................................................................................................................ATATTTGATGGCGACTGCG...........................................................................................................................................................................................................................................................................................................................................................................................................1911.001000010
.............................................................................................................................................TTCGCGGTTTGAGTAATTTCGA............................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGGTTTTTACGCAAAGAAATTAAT................................................................................................................................................2711.001000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCAACGAACAGCGCAACCAG........................2311.001000001
droGri2
---------------------------------------------------------------------------------GTGCGC-TCG--CC------------TTTCGCTGCT--TTTCTGTATGTGTGTGTGTGTATTCGCATTTTGAGTAATTTCGAAATT-TTTTTTTGTATATTTGATGGCGACAACGACGG-----CTGCTTTACTCACGAGAAAC--GCGCGTATGTCGAA-AATTGTA-GCGC-TTACGAA--TATATCGGTGTGTAAAAATTGCTTTAAAATTGT-GGTAA------AAATTAGCG--AAAATT-ATATAAACT----------------GTGT-----GTAAAGTGTTTATTAAATGCAATGTGCTACGATTGCGACTCAAATTT-ATTATGC-ATACAATAAATTTTGCGCCAAAAAATGCATTT------GA-AAATGTGAGACTTCAATGGACATGACAA-T-TTTTTTCATTATACTTTT---------TTTTTTC--TTTTTTTTTTTTTTGG-TGGTGGCAACGAACAGAGCAACCAGC--------CAGCAC---TGTAGASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 04:45 PM