ID:

dsi_137

 Coordinate:

2r:4263374-4263450 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-19.1 -19.0 -18.6

Flybase annnotation

exon [2r_4263198_4263450_-]; five_prime_UTR [2r_4263248_4263450_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------###############################################################################################################################
CGTCACCGGCTTTTTTGCTTTTTAGCTGGCGCATCGAGTGGCAGCGGCTCAGATGTTCTTTGGAAGTGCGCTGGTCAAGTCGTCGGAAAAACGCTGAGAAGCGAGTGCAGCTAAAGAAAAATCTAGCCAATTCACAAGTAAAAGTGTTAGCCAGTTTGCAATACACAACACTGTTGA
***********************************.....(((((..(((((.((((.(((.((.....(((.....)))..)).))).)))))))))..))...)))..******************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 M053
female body
 M025
embryo
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
 O002
Head
 O001
Testis
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
..................................................AGATGTTCTTTGGAAGTG............................................................................................................. 18 0 1 46.00 46 9 31 4 0 2 0 0 0 0 0 0
.....................................................................GCTGGTCAAGTCGTCGGAAAAACGCT.................................................................................. 26 0 1 14.00 14 14 0 0 0 0 0 0 0 0 0 0
........................................................................GGTCAAGTCGTCGGAAAAACGCT.................................................................................. 23 0 1 12.00 12 9 0 0 3 0 0 0 0 0 0 0
.........................................................................GTCAAGTCGTCGGAAAAACGCT.................................................................................. 22 0 1 11.00 11 9 2 0 0 0 0 0 0 0 0 0
.................................................................................GTCGGAAAAACGCTGAGAAG............................................................................ 20 0 1 10.00 10 1 6 0 3 0 0 0 0 0 0 0
...........................................................................CAAGTCGTCGGAAAAACGCT.................................................................................. 20 0 1 8.00 8 7 0 0 1 0 0 0 0 0 0 0
.....................................................................GCTGGTCAAGTCGTCGGA.......................................................................................... 18 0 1 8.00 8 0 3 0 1 2 1 1 0 0 0 0
.........................................................................GTCAAGTCGTCGGAAAAAC..................................................................................... 19 0 1 4.00 4 0 3 0 1 0 0 0 0 0 0 0
.........................................................................GTCAAGTCGTCGGAAAAACGCTGAGA.............................................................................. 26 0 1 3.00 3 2 0 0 1 0 0 0 0 0 0 0
..................................................AGATGTTCTTTGGAAGTGCGC.......................................................................................................... 21 0 1 3.00 3 0 0 0 0 0 1 1 1 0 0 0
.................................................................................GTCGGAAAAACGCTGAGAA............................................................................. 19 0 1 3.00 3 1 2 0 0 0 0 0 0 0 0 0
..................................................AGATGTTCTTTGGAAGTGCG........................................................................................................... 20 0 1 2.00 2 1 0 0 0 1 0 0 0 0 0 0
......................................................................CTGGTCAAGTCGTCGGAAAAAC..................................................................................... 22 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0
......................................................GTTCTTTGGAAGTGCGCTG........................................................................................................ 19 0 1 2.00 2 1 0 0 0 1 0 0 0 0 0 0
..................................................AGATGTTCTGTGGAAGTG............................................................................................................. 18 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
...................................................................................CGGAAAAACGCTGAGAAG............................................................................ 18 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
.........................................................................GTCAAGTCGTCGGAAAAACG.................................................................................... 20 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
..................................................................................TCGGAAAAACGCTGAGAAG............................................................................ 19 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
......................................................................CTGGTCAAGTCGTCGGAA......................................................................................... 18 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
..............................................................................GTCGTCGGAAAAACGCTGAGAAGCG.......................................................................... 25 0 1 2.00 2 0 0 0 0 0 0 2 0 0 0 0
..........................................................TTTGGAAGTGCGCTGGTCA.................................................................................................... 19 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0
.....................................................................................................................AAAATCTAGCCAATTCACAAGTAAAAGT................................ 28 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
................................................................AGTGCGCTGGTCAAGTCGTC............................................................................................. 20 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0
.............................................................................AGTCGTCGGAAAAACGCT.................................................................................. 18 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0
.........................................................................GTCAAGTCGTCGGAAAAACGCTGAGG.............................................................................. 26 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
........................................................................GGTCAAGTCGTCGGAAAAACGCTGAGA.............................................................................. 27 0 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................TTGCAATACACAACACTG.... 18 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................CTAGCCCACTCACAAGTAAAAGT................................ 23 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.....................................................................GCTGGTCAAGTCGTCGGAAAAA...................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................TTCTTTGGAAGTGCGCTGGTCAAG.................................................................................................. 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............................................................................AAGTCGTCGGAAAAACGCT.................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................GCTGGTCAAGTCGTCGGAAAAAC..................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................GCTGGTCAAGTCGTCGGAAAAACGC................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.........................................................................GTCAAGCCGTCGGAAAAACGCT.................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................GAAGTGCGCTGGTCAAGTCGTC............................................................................................. 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..................................................AGATGTTCTTTGGAAGT.............................................................................................................. 17 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................AAATCTAGCCAATTCACAAGTAAAAGT................................ 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................GAAGCGAGTGCAGCTAAAGA............................................................ 20 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
.........................................................................................AACGCTGAGAAGCGAGTG...................................................................... 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
..........................................................................TCAAGTCGTCGGAAAAACGCTGAGA.............................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................CTGGTCAAGTCGTCGGAAAAACGCT.................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................GAGAAGCGAGTGCAGCTAAAGAAAAATC...................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................CAGCTAAAGAAAAATCTAGC.................................................. 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
..................................................................TGCGCTGGTCAAGTCGTC............................................................................................. 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
............................................................................AAGTCGTCGGAAAAACGCTGAGAAGC........................................................................... 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.........................................................................GTCAAGTCGTCGGAAAAA...................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................AGTGTTAGCCAGTTTGCA................. 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.....................................................TGTTCTTTGGAAGTG............................................................................................................. 15 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................CTAGCCAATTCACAAGTAAAAGTGT.............................. 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................GAGTGCAGCTAAAGAAAAATCTAGCC................................................. 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................CTTTGGAAGTGCGCTGGT...................................................................................................... 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
................................................TCAGATGTTCTTTGGAAGTGCGCT......................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
....................................................ATGTTCTTTGGAAGTGCGCT......................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................GTTAGCCAGTTTGCAATACACA.......... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
......................................................GTTCTTTGGAAGTGCGC.......................................................................................................... 17 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................TAGCCAGTTTGCAATACAC........... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
......................................................GTTCTTTGGAAGTGCGCTGG....................................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.............................................................................AGTCGTCGGAAAAACGCTGAGAAGCGAGT....................................................................... 29 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................CTAGCCAATTCACAAGTAAAAGT................................ 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................CGCTGAGAAGCGAGTGCAGCTAAAGA............................................................ 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..................................................AGATGTTCTTTGGAAGTGC............................................................................................................ 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.................................................CAGATGTTCTTTGGAAGTGCGCTGG....................................................................................................... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
...................................................................................CGGAAAAACGCTGAGAAGCGAGTGC..................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
.........................................................................GTCAAGGCGTCGGAAAAAC..................................................................................... 19 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.................................................................................GTCGGAAAAACGCTGAGAAGGGAGT....................................................................... 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................ATTCACAAGTAAAAGTGTTAGCC......................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
........................................................................................AAACGCTGAGAAGCGAGTGCAGCTAA............................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
...............................................................AAGTGCGCTGGTCAAGTCGT.............................................................................................. 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
................................................TCAGATGTTCTTTGGAAGTGCGCTG........................................................................................................ 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
......................................................................................AAAAACGCTGAGAAGCGAG........................................................................ 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.............................................................GGAAGTGCGCTGGTCAAGT................................................................................................. 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..................................................................................TCGGAAAAACGCTGAGAAGC........................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................AACGCTGAGAAGCGAGTGCAGCTAAAGA............................................................ 28 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
.....................................................................GCTGGTCAAGTCGTCGGCAAAACGCT.................................................................................. 26 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
..................................................................TGCGCTGGTCAAGTCGTCGGA.......................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.........................................................................GTCAAGTCGTCGGAAAAACGCTGA................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................GGTCAAGTCGTCGGAAAAACGCC.................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................CTTTGGAAGTGCGCTGGTCAAGG................................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................AACGCTGAGAAGCGAGTGC..................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
....................................................................CGCTGGTCAAGTCGTCGGAAAAACGCT.................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................GTCGTCGGAAAAACGCTG................................................................................. 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
......................................................................CTGGTCAAGTCGTCGGCAA........................................................................................ 19 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.................................................................................GTCGGAAAAACGCTGAGA.............................................................................. 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................AAGTGCGCTGGTCAAGTCGAC............................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................CAAGCCGTCGGAAAAA...................................................................................... 16 1 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0
.......................................................TTCTTTGGAAGTGCCC.......................................................................................................... 16 1 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0
.........................................................CTTTGGCAGTACGCTGG....................................................................................................... 17 2 20 0.10 2 0 0 0 0 0 0 0 0 0 2 0
............................................................ACGGAGTGCGCTGGTCAAG.................................................................................................. 19 3 13 0.08 1 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................CGCTGAGAAGCGTGT....................................................................... 15 1 15 0.07 1 0 0 0 0 1 0 0 0 0 0 0
..............................................................GAAGTTCGGTGGTCAAGTA................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
........................................................................GGTCAACTCGTAGGAA......................................................................................... 16 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................GAGGGCGGTTAAAGAAAAA........................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

GCAGTGGCCGAAAAAACGAAAAATCGACCGCGTAGCTCACCGTCGCCGAGTCTACAAGAAACCTTCACGCGACCAGTTCAGCAGCCTTTTTGCGACTCTTCGCTCACGTCGATTTCTTTTTAGATCGGTTAAGTGTTCATTTTCACAATCGGTCAAACGTTATGTGTTGTGACAACT
*******************************************************************.....(((((..(((((.((((.(((.((.....(((.....)))..)).))).)))))))))..))...)))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M023
head
 SRR902008
ovaries
.............................................................................................................................CGGGTAAGTGTTCATTTTCACAATCGGT........................ 28 1 1 5.00 5 0 5 0 0 0 0
........................................CGTCGCCGAGTCTACAAGAAACCTT................................................................................................................ 25 0 1 2.00 2 1 1 0 0 0 0
...................................................................................................................................AGTGTTCATTTTCACAATCGGTCAA..................... 25 0 1 2.00 2 2 0 0 0 0 0
..................................................................................................................TCTTTTTAGATCGGGTAAGTGTTCAT..................................... 26 1 1 2.00 2 1 1 0 0 0 0
............................CGCGTAGCTCACCGTCGCCGAGTCT............................................................................................................................ 25 0 1 2.00 2 1 1 0 0 0 0
..............................................CGAGTCTACAAGAAACCTTCACGCGAC........................................................................................................ 27 0 1 2.00 2 2 0 0 0 0 0
.............................................................................................................................GGGGTAAGTGTTCATTTTCACAATCGGT........................ 28 2 1 2.00 2 2 0 0 0 0 0
...................................................................................................................................AGTGTTCATTTTCACAATCGGTCAAACGT................. 29 0 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................AAGTGTTCATTTTCACAATCGGTCAA..................... 26 0 1 1.00 1 1 0 0 0 0 0
...........................................CGCCGAGTCTACAAGAAACCTT................................................................................................................ 22 0 1 1.00 1 0 0 0 0 1 0
..............................................CGAGTCTACAAGAAACCTTCACGC........................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
.....................................CACCGTCGCCGAGTCTACAAGAAACCTTC............................................................................................................... 29 0 1 1.00 1 0 1 0 0 0 0
....................................TCACCGTCGCCGAGTCTACAAGAAAC................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0
..............................................CGAGTCTACAAGAAACCTTCACGCGA......................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0
.....................................CACCGTCGCCGAGTCTACAAGAAACCTTCAC............................................................................................................. 31 0 1 1.00 1 0 1 0 0 0 0
....................................TCACCGTCGCCGAGTCTACAAGAAACCT................................................................................................................. 28 0 1 1.00 1 0 0 1 0 0 0
.....................................................................................................................................................CGGTCAAACGTTATGTGTTGTGAC.... 24 0 1 1.00 1 0 0 0 1 0 0
.........................................................................................................................AGATCGGGTAAGTGTTCATTTTCACAAT............................ 28 1 1 1.00 1 1 0 0 0 0 0
.........................................GTCGCCGAGTCTACAAGAAACCTTCACG............................................................................................................ 28 0 1 1.00 1 0 1 0 0 0 0
.............................................................................TCAGCAGCCTTTTCGCGACTCTT............................................................................. 23 1 1 1.00 1 1 0 0 0 0 0
......................................................................................................................................GTTCATTTTCACAATCGGTCAAACGTT................ 27 0 1 1.00 1 0 0 0 0 0 1
..........AAAAAACTAAAGATCGACCC................................................................................................................................................... 20 3 20 0.10 2 2 0 0 0 0 0
.................................................................CACGCGACCGGTTCA................................................................................................. 15 1 20 0.05 1 0 0 0 1 0 0
.................................................................CTCGCGACCAGTTCA................................................................................................. 15 1 20 0.05 1 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:4263324-4263500 - dsi_137 CG----------------------TCACCGGCTT-TTTTGCTTTTTAGCTGGCGCATCGAGTGGC-AGCGGCTCAGATGTTCTTTGGAA-----GTGCGCTGGTCAAGTCGTCGGAAAAACG---CTGAGAAGC-----------------------------------------GAGTGCAGCTAA--AGAAAAATCTAGC--------------C----------AATT-------CACAAGT-------A----AAA--GTGTT---------AGCCAGTTTGCA------ATAC--------------ACAACACTGTTGA
droSec2 scaffold_1:1073587-1073755 - C------------------------------CAT-TTTTGCTTTTTAGCTGGCGCATCGGGTGGA-AGCGGCTCAGATGTTCTTTGGAA-----GTGCGCTGGTCAAGTCGTCGGAAAAGCG---CTGAGAAGC-----------------------------------------GAATGCAGCTAA--AGAAAAATCTAGC--------------C----------CATT-------CACAAGT-------A----AAA--GTGTT---------AGCCAGTTTGCA------ATAC--------------ACAACACTGTTGA
dm3 chr2R:3416658-3416839 - CG----------------------TCACCGGCTT-TTTTGCTTTTTAGCTGCCGCATCGAGTGAA--GCGGCTCAGATGTTCTTTGGAA-----GTGCGCTGGTCAAGTCGTCGGAAAAGCG---CCGAGAAGC-----------------------------------------AATTGCAGCTAA--AGAAAAATCTAGC--------------C----------AATT-------CACAAGT-------A----AAA--GTGTT---------AGTCAGTTTGTATAATAAATAC--------------ACAACGCAGTTGA
droEre2 scaffold_4929:19182001-19182172 + C-------------------------ACCGGCTT--TTTGCTTTTTAGCTGGCTCATCGACCGAA--TCGCCTCAGATGTTCTTTGGAA-----GTGCGCTGGTCAAGACGTGGGAAAAGCG---CTGAGAAGC-----------------------------------------GAGTGCAGCA-A-AAGAAAAATCTAGC--------------C----------AATT-------CACAAGT-------A----AAA--GTGTT---------ACCCAGTTTGCA------ATAC--------------ACACCGCAGTATA
droYak3 2L:16093878-16094017 - C---------------------------CGGCT----GTGCTTTTTAGCTGGCTCATCGGCAGAA--TCGCCTCAGATGTTCTTTGAAA-----GTGCGCTGGTCAAGACGTCG-------------------------------------------------------------AAGTGCAGCTAAAGAGAAAAATCTAGC--------------C----------AATT-AC-AAGTACAAGT-------A----AAA--GTGTT---------ACCCAGTTTGC--------------------------------------
droEug1 scf7180000409672:5431348-5431506 - CG----------------------TCACCGGCTT-TTTTGCTTTTTAGCTGGCGCATCGACTGAA-ATCATTTCAGATGTTCTTTGGAA-----GTGCGCTGGTCAAGACGTGAGAAAAGC--AACC--GTAGC-----------------------------------------TAGTGCAGCTAA-AAGAAAAATCTAGC--------------C----------AATT-------TACAAGT-------A----AAA--GTGCC---------AACCAGTTTAC--------------------------------------
droBia1 scf7180000302292:2726013-2726180 + CG----------------------TCACCGGCTT-TTTTGCTTTTTAGCTGGCGCATCGACTGAA-AACGCCTCAGATGTTCTTTGGAA-----GTGCGCTGGTCAAGACGTGAGAAAATCGTATCC--CAAGC-----------------------------------------GAGTGCAGCGAA-GAGAAAAATCTAGC--------------C----------AATT-------CACAAGT-------A----AAA--GTGTT---------AACCAGTTTACC----------------------------CCCAGT---
droTak1 scf7180000416016:19063-19221 - CG----------------------TCACCGGCTT-TTTTGCTTTTTAGCTGGCGCATCGACTGAA-AACGTTTCAGATGTTCTTTGGAA-----GTGCGCTGGTCAAGACGTGAGAAAATT--AGCC--GAAGC-----------------------------------------GAGTGCAGCTAA-GAGAAAAATCTAGC--------------C----------AATT-------CACCAGT-------A----AAA--GTGTT---------AACCAGTTTAC--------------------------------------
droEle1 scf7180000491347:252812-252979 - CG----------------------TGACCGGCTT-TTTTGCTTTTTAGCTGGCGCATCGACTGAA-AACGCTTCAGATGTTCTTTGGAA-----GTGCGCTGGTCAAGACGTGAGAAAAAT--ATCC--GAAGC-----------------------------------------GAGTGCAGCGAA-AAGAAAAATCTAGC--------------C----------AATT-------CACAAGT-------A----AAA--GTGTT---------AACCAGCTTACC--------------------------AACAGTG---C
droRho1 scf7180000780160:30774-30943 - CG----------------------TCACCGGCTT-TTTTGCTTTTTAGCTGGCGCATCGACTGAA-AACTTTTCAGATGTTCTTTGGAA-----GTGCGCTGGTCAAGACGTGAAACAAATTCAGCC--AAAGC-----------------------------------------GAGTGCAGCTAA-GAGAAAAATCTAGC--------------C----------AATT-------CACAAGT-------A----AAA--GTGTT---------AACCAGTTTACC------AT----------------------CAG-TGC
droFic1 scf7180000453948:174233-174391 - CG----------------------TCACCGGCTT-TTTTGCTTTTTAGCTGGCGCATCGACTGAA-ATCGTTTCAGATGTTCTTTGGAA-----GTGCGCTGGTCAAGACGTGAAAAAAAC---------AAGC-----------------------------------------AAGTGCAGCTAA-AAGAAAAATCTTGC--------------C----------AATT-------TACAAGT-------A----AAA--GTGTT---------AACCAGTTTACC--------------------------------GTT-G
droKik1 scf7180000302471:24471-24612 + CG----------------------TCACCGGCTT-TTTTGCTTTTTAGCTGGCGCATCGACCGAG-CTCGCCTCAGATGTTCTTTGGAA-----GTGCGCTGGTCAAGACGTAAAACA-------------AAA-----------------------------------------AAGTGCAGCTAA-AAGAAAAATCTA-------------------------------------------GT-------A----AAA--GTGCT---------AAAGAGTTAAAA------AA----------------------------A
droAna3 scaffold_13266:9941103-9941241 - C---------------------------CGGCTT-TTTTGCTTTTTAGCTGGCGCATCGGCGTTA-GCGGGCTCAGATGTTCTTTGGAA-----GTGCGCTGGCCAAGACGT-----------------------------------------------------------------GTGCAGCGAA-AAGAAAGATCTGCT--------------T----------TTGTTAAAAGTTAAAAGTTTGAAAGA----AAA--GTGTC---------AA-----------------------------------------------
droBip1 scf7180000396759:1657425-1657579 - GC----------------------TCGCCGGCTT-TTTTGCTTTTTAGCTGGCGCATCGGCGTTA-GCGGGCTCAGATGTTCTTTGGAA-----GTGCGCTGGTCAAGACGT-----------------------------------------------------------------GTGCAGCGAA-AAGAAAAATCTACT------------T-C----------AAGT-------CTCAAGCT--AAAGA----AAA--GTGCT---------AACTAAAGTGCC------ATTC--------------AAAA--------T
dp5 3:12326219-12326401 + C---------------------------CGGCCTGTTTTGCTT-TTAGCTGCCGCTCCGGCGCATTTACGACTGAGTTGTTCTTTGGAA-----GTGCGCTGGTCAAGACGCGAAA--A-----TCT--GAAACA----------------------------------------AAGTGCATCAAA-GAGAAAGATCCGTC--------------T----------AA------AAATATTAGT-------A----AAA--GTGTTAAAAGAAAG----TGCTAGCAGTACTAATTGACAA------------AATTGTGCTAC
droPer2 scaffold_44:508342-508524 + C---------------------------CGGCCTGTTTTGCTT-TTAGCTGCCGCTCCGGCGCATTTACGACTGAGTTGTTCTTTGGAA-----GTGCGCTGGTCAAGACGCGAAA--A-----TCT--GAAACA----------------------------------------AAGTGCAGCAAA-GAGAAAGATCCGTC--------------T----------AA------AAATATTAGT-------A----AAA--GTGTTAAAAGAAAG----TGTTAGCAGTACTAATTTACAA------------AATTGTGCTAC
droWil2 scf2_1100000004382:96950-97190 + ------------------------------GTTT-TTTTGCTTTTTAGGCGACGCATCGCTGGGGAAACATTTTAGTTGTTCTTTGGAAGTGAAGTGCGCTGGTCAGAAAACAAAA----------CGAGA--CA--------G-AGCGAAAAAACAAAATAAAATAAACGCACAAAGCACAATTA--AAGAAAAATCTGTGAAAGAAAAAAAAACAAATTTTACAACA------AAAGAG-ACA-------AAAGCAAAGTGTGTT---------AACGAAAAATCC-------TTGCTAAAAATAAGCCAAAAATAAGGCCAA
droVir3 scaffold_12875:17561848-17562086 - CTGCTGACGCCGACGTCGTCGCTGCTGCCGGTTTATTTTGCTTTTTAGAGCGTGCATCGTCTCAGGAAAATTTCAGTTGTTCTTTGGAA-----TTGCGCTCGACAAGTCCAG-------TG---CTGGAAA--GAGCTACTACAATTC-AAA----------------------AAGAAAAAAAAA-AAGAAAAATCTGTGAAAC--------------TCTGTGTAA------AGACAG-TGA-------A----AAA--GTGTTTGAAGAA-C----C-TAAACAAGCATAGTTAATAAA-----GTTAATAACATTTTTAA
droGri2 scaffold_15245:17100231-17100408 - CG----------------------CTGCCGGTTTATTTTGCTTTTTAGAGCGTACATCGTGTGGAAAAAATGTTAGTTGTTCTTTGGAA-----GTGCGCTCGAGAAGTC---CAA----C---GTT--GGAGCGAGTTGCTC---TGC------------------------------AAATAGAA-AAGAAAAATCTG--------------------------------------------A-------G----AAA--GTGTTAAAAAGAAC----T-TAAGCAAACAAAGTGAATAA------------GCTTACAACAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CG----------------------TCACCGGCTT-TTTTGCTTTTTAGCTGGCGCATCGAGTGGC-AGCGGCTCAGATGTTCTTTGGAA-----GTGCGCTGGTCAAGTCGTCGGAAAAACG---CTGAGAAGC-----------------------------------------GAGTGCAGCTAA--AGAAAAATCTAGC--------------C----------AATT-------CACAAGT-------A----AAA--GTGTT---------AGCCAGTTTGCA------ATAC--------------ACAACACTGTTGASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................................................................AGATGTTCTTTGGAA-----GTG....................................................................................................................................................................................................................................18146.0046319040000002000000
..................................................................................................GCTGGTCAAGTCGTCGGAAAAACG---CT......................................................................................................................................................................................................26114.0014014000000000000000
.....................................................................................................GGTCAAGTCGTCGGAAAAACG---CT......................................................................................................................................................................................................23112.001209300000000000000
......................................................................................................GTCAAGTCGTCGGAAAAACG---CT......................................................................................................................................................................................................22111.001129000000000000000
..............................................................................................................GTCGGAAAAACG---CTGAGAAG................................................................................................................................................................................................20110.001061300000000000000
........................................................................................................CAAGTCGTCGGAAAAACG---CT......................................................................................................................................................................................................2018.00807100000000000000
..................................................................................................GCTGGTCAAGTCGTCGGA.................................................................................................................................................................................................................1818.00830100100002100000
......................................................................................................GTCAAGTCGTCGGAAAAAC............................................................................................................................................................................................................1914.00430100000000000000
......................................................................................................GTCAAGTCGTCGGAAAAACG---CTGAGA..................................................................................................................................................................................................2613.00302100000000000000
..........................................................................AGATGTTCTTTGGAA-----GTGCGC.................................................................................................................................................................................................................................2113.00300001100000100000
..............................................................................................................GTCGGAAAAACG---CTGAGAA.................................................................................................................................................................................................1913.00321000000000000000
..........................................................................AGATGTTCTTTGGAA-----GTGCG..................................................................................................................................................................................................................................2012.00201000000001000000
...................................................................................................CTGGTCAAGTCGTCGGAAAAAC............................................................................................................................................................................................................2212.00211000000000000000
..............................................................................GTTCTTTGGAA-----GTGCGCTG...............................................................................................................................................................................................................................1912.00201000000001000000
................................................................................................................CGGAAAAACG---CTGAGAAG................................................................................................................................................................................................1812.00220000000000000000
......................................................................................................GTCAAGTCGTCGGAAAAACG---........................................................................................................................................................................................................2012.00220000000000000000
...............................................................................................................TCGGAAAAACG---CTGAGAAG................................................................................................................................................................................................1912.00220000000000000000
...................................................................................................CTGGTCAAGTCGTCGGAA................................................................................................................................................................................................................1812.00220000000000000000
...........................................................................................................GTCGTCGGAAAAACG---CTGAGAAGC-----------------------------------------G.....................................................................................................................................................2512.00200000200000000000
..................................................................................TTTGGAA-----GTGCGCTGGTCA...........................................................................................................................................................................................................................1912.00200200000000000000
................................................................................................................................................................................................AAAATCTAGC--------------C----------AATT-------CACAAGT-------A----AAA--GT.............................................................2812.00200020000000000000
........................................................................................A-----GTGCGCTGGTCAAGTCGTC....................................................................................................................................................................................................................2012.00200200000000000000
..........................................................................................................AGTCGTCGGAAAAACG---CT......................................................................................................................................................................................................1812.00200000000002000000
......................................................................................................GTCAAGTCGTCGGAAAAACG---CTGAGG..................................................................................................................................................................................................2612.00202000000000000000
.....................................................................................................GGTCAAGTCGTCGGAAAAACG---CTGAGA..................................................................................................................................................................................................2712.00201100000000000000
...........................................................................................................................................................................................................................................................................................TTGCA------ATAC--------------ACAACACTG....1812.00211000000000000000
..................................................................................................GCTGGTCAAGTCGTCGGAAAAA.............................................................................................................................................................................................................2211.00101000000000000000
...............................................................................TTCTTTGGAA-----GTGCGCTGGTCAAG.........................................................................................................................................................................................................................2411.00110000000000000000
.........................................................................................................AAGTCGTCGGAAAAACG---CT......................................................................................................................................................................................................1911.00101000000000000000
..................................................................................................GCTGGTCAAGTCGTCGGAAAAAC............................................................................................................................................................................................................2311.00101000000000000000
..................................................................................................GCTGGTCAAGTCGTCGGAAAAACG---C.......................................................................................................................................................................................................2511.00100100000000000000
......................................................................................GAA-----GTGCGCTGGTCAAGTCGTC....................................................................................................................................................................................................................2211.00100010000000000000
..........................................................................AGATGTTCTTTGGAA-----GT.....................................................................................................................................................................................................................................1711.00100000000001000000
.................................................................................................................................................................................................AAATCTAGC--------------C----------AATT-------CACAAGT-------A----AAA--GT.............................................................2711.00100010000000000000
.................................................................................................................................GAAGC-----------------------------------------GAGTGCAGCTAA--AGA.....................................................................................................................................2011.00100000000100000000
......................................................................................................................AACG---CTGAGAAGC-----------------------------------------GAGTG.................................................................................................................................................1811.00100000000001000000
.......................................................................................................TCAAGTCGTCGGAAAAACG---CTGAGA..................................................................................................................................................................................................2511.00101000000000000000
...................................................................................................CTGGTCAAGTCGTCGGAAAAACG---CT......................................................................................................................................................................................................2511.00101000000000000000
...............................................................................................................................GAGAAGC-----------------------------------------GAGTGCAGCTAA--AGAAAAATC...............................................................................................................................2811.00100010000000000000
....................................................................................................................................................................................CAGCTAA--AGAAAAATCTAGC--------------.............................................................................................................2011.00100001000000000000
...............................................................................................TGCGCTGGTCAAGTCGTC....................................................................................................................................................................................................................1811.00100100000000000000
.........................................................................................................AAGTCGTCGGAAAAACG---CTGAGAAGC-----------------------------------------......................................................................................................................................................2611.00100000000000100000
......................................................................................................GTCAAGTCGTCGGAAAAA.............................................................................................................................................................................................................1811.00110000000000000000
...................................................................................................................................................................................................................................................................A--GTGTT---------AGCCAGTTTGCA------...............................1811.00100000000000100000
.............................................................................TGTTCTTTGGAA-----GTG....................................................................................................................................................................................................................................1511.00100000000001000000
.....................................................................................................................................................................................................CTAGC--------------C----------AATT-------CACAAGT-------A----AAA--GTGT...........................................................2511.00100010000000000000
...............................................................................................................................................................................GAGTGCAGCTAA--AGAAAAATCTAGC--------------C----------..................................................................................................2611.00100010000000000000
.................................................................................CTTTGGAA-----GTGCGCTGGT.............................................................................................................................................................................................................................1811.00100000000001000000
........................................................................TCAGATGTTCTTTGGAA-----GTGCGCT................................................................................................................................................................................................................................2411.00100010000000000000
............................................................................ATGTTCTTTGGAA-----GTGCGCT................................................................................................................................................................................................................................2011.00100010000000000000
........................................................................................................................................................................................................................................................................GTT---------AGCCAGTTTGCA------ATAC--------------ACA..........2211.00100010000000000000
..............................................................................GTTCTTTGGAA-----GTGCGC.................................................................................................................................................................................................................................1711.00100000000001000000
..........................................................................................................................................................................................................................................................................T---------AGCCAGTTTGCA------ATAC--------------AC...........1911.00100010000000000000
..............................................................................GTTCTTTGGAA-----GTGCGCTGG..............................................................................................................................................................................................................................2011.00100000000001000000
..........................................................................................................AGTCGTCGGAAAAACG---CTGAGAAGC-----------------------------------------GAGT..................................................................................................................................................2911.00100100000000000000
.....................................................................................................................................................................................................CTAGC--------------C----------AATT-------CACAAGT-------A----AAA--GT.............................................................2311.00100010000000000000
........................................................................................................................CG---CTGAGAAGC-----------------------------------------GAGTGCAGCTAA--AGA.....................................................................................................................................2611.00100010000000000000
..........................................................................AGATGTTCTTTGGAA-----GTGC...................................................................................................................................................................................................................................1911.00110000000000000000
.........................................................................CAGATGTTCTTTGGAA-----GTGCGCTGG..............................................................................................................................................................................................................................2511.00100000000001000000
................................................................................................................CGGAAAAACG---CTGAGAAGC-----------------------------------------GAGTGC................................................................................................................................................2511.00100001000000000000
....................................................................................................................................................................................................................................ATT-------CACAAGT-------A----AAA--GTGTT---------AGCC.............................................2311.00100010000000000000
.....................................................................................................................AAACG---CTGAGAAGC-----------------------------------------GAGTGCAGCTAA--........................................................................................................................................2611.00100001000000000000
.......................................................................................AA-----GTGCGCTGGTCAAGTCGT.....................................................................................................................................................................................................................2011.00100000000000100000
........................................................................TCAGATGTTCTTTGGAA-----GTGCGCTG...............................................................................................................................................................................................................................2511.00100100000000000000
...................................................................................................................AAAAACG---CTGAGAAGC-----------------------------------------GAG...................................................................................................................................................1911.00100000000001000000
.....................................................................................GGAA-----GTGCGCTGGTCAAGT........................................................................................................................................................................................................................1911.00100010000000000000
...............................................................................................................TCGGAAAAACG---CTGAGAAGC-----------------------------------------......................................................................................................................................................2011.00110000000000000000
......................................................................................................................AACG---CTGAGAAGC-----------------------------------------GAGTGCAGCTAA--AGA.....................................................................................................................................2811.00100000100000000000
...............................................................................................TGCGCTGGTCAAGTCGTCGGA.................................................................................................................................................................................................................2111.00100000000000100000
......................................................................................................GTCAAGTCGTCGGAAAAACG---CTGA....................................................................................................................................................................................................2411.00101000000000000000
.....................................................................................................GGTCAAGTCGTCGGAAAAACG---CC......................................................................................................................................................................................................2311.00101000000000000000
.................................................................................CTTTGGAA-----GTGCGCTGGTCAAGG........................................................................................................................................................................................................................2311.00101000000000000000
......................................................................................................................AACG---CTGAGAAGC-----------------------------------------GAGTGC................................................................................................................................................1911.00100000100000000000
.................................................................................................CGCTGGTCAAGTCGTCGGAAAAACG---CT......................................................................................................................................................................................................2711.00101000000000000000
...........................................................................................................GTCGTCGGAAAAACG---CTG.....................................................................................................................................................................................................1811.00100000000001000000
..............................................................................................................GTCGGAAAAACG---CTGAGA..................................................................................................................................................................................................1811.00110000000000000000
droSec2
C------------------------------CAT-TTTTGCTTTTTAGCTGGCGCATCGGGTGGA-AGCGGCTCAGATGTTCTTTGGAA-----GTGCGCTGGTCAAGTCGTCGGAAAAGCG---CTGAGAAGC-----------------------------------------GAATGCAGCTAA--AGAAAAATCTAGC--------------C----------CATT-------CACAAGT-------A----AAA--GTGTT---------AGCCAGTTTGCA------ATAC--------------ACAACACTGTTGASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........................................................................AGATGTTCTTTGGAA-----GTG....................................................................................................................................................................................................................................18147.0047101729
..........................................................................AGATGTTCTTTGGAA-----GTGC...................................................................................................................................................................................................................................1918.0080053
..........................................................................AGATGTTCTTTGGAA-----GTGCG..................................................................................................................................................................................................................................2016.0061113
........................................................................................................CAAGTCGTCGGAAAAGCG---CTGAGAAGC-----------------------------------------......................................................................................................................................................2715.0050320
......................................................................................................GTCAAGTCGTCGGAAAAGCG---CTGA....................................................................................................................................................................................................2415.0050104
..........................................................................AGATGTTCTTTGGAA-----GTGCGCTGGTC............................................................................................................................................................................................................................2614.0040220
...............................................................................................TGCGCTGGTCAAGTCGTCGGAAAAGCG---........................................................................................................................................................................................................2713.0030300
..........................................................................AGATGTTCTTTGGAA-----GTGCGC.................................................................................................................................................................................................................................2113.0030030
.................................................................................................................................................................................ATGCAGCTAA--AGAAAAATCT..............................................................................................................................2012.0020011
...........................................................................GATGTTCTTTGGAA-----GTGCG..................................................................................................................................................................................................................................1912.0022000
...................................................................................................CTGGTCAAGTCGTCGGAAAAGC............................................................................................................................................................................................................2212.0020200
............................................................................................................................................................................................................................................................A----AAA--GTGTT---------AGCCAGTTTGCA------ATA............................2412.0020110
......................................................................................................GTCAAGTCGTCGGAAAAGCG---........................................................................................................................................................................................................2012.0021001
........................................................................TCAGATGTTCTTTGGAA-----GTG....................................................................................................................................................................................................................................2012.0020011
..........................................................................AGATGTTCTTTGGAA-----GTGCGCTGGT.............................................................................................................................................................................................................................2512.0020101
.......................................................................................................TCAAGTCGTCGGAAAAGCG---CTGAGAAGC-----------------------------------------G.....................................................................................................................................................2911.0010010
....................................................................................................................................GC-----------------------------------------GAATGCAGCTAA--AGAAAAA.................................................................................................................................2111.0010100
..........................................................................AGATGTTCTTTGGAA-----GTGCGCTGG..............................................................................................................................................................................................................................2411.0010001
.................................................................................................................................................................................ATGCAGCTAA--AGAAAAATCTAGC--------------C----------CA................................................................................................2611.0010001
..............................................................................GTTCTTTGGAA-----GTGCGCTGGTC............................................................................................................................................................................................................................2211.0010100
.....................................................................................................................AAGCG---CTGAGAAGC-----------------------------------------GAATGCA...............................................................................................................................................2111.0011000
......................................................................................................................AGCG---CTGAGAAGC-----------------------------------------GAATGCAGCTA...........................................................................................................................................2411.0010001
..............................................................................................................GTCGGAAAAGCG---CTGAGAA.................................................................................................................................................................................................1911.0011000
...............................................................................TTCTTTGGAA-----GTGCGCTGGTCAAGTC.......................................................................................................................................................................................................................2611.0010100
.................................................................................................CGCTGGTCAAGTCGTCGGAAAAG.............................................................................................................................................................................................................2311.0010001
.......................................................................................................................................................................................CTAA--AGAAAAATCTAGC--------------C----------CAT...............................................................................................2111.0010010
........................................................................................A-----GTGCGCTGGTCAAGTCGTCGGAA................................................................................................................................................................................................................2411.0010100
...............................................................................................................................................................................GAATGCAGCTAA--AGAAAAATCTAGC--------------.............................................................................................................2511.0010010
..................................................................................................................................................................................TGCAGCTAA--AGAAAAATCTA.............................................................................................................................2011.0010100
........................................................................................A-----GTGCGCTGGTCAAGTCGTC....................................................................................................................................................................................................................2011.0010010
.........................................................................................................AAGTCGTCGGAAAAGCG---CTGAGAAGC-----------------------------------------......................................................................................................................................................2611.0010010
..............................................................................................GTGCGCTGGTCAAGTCGTCGGAAAAGC............................................................................................................................................................................................................2711.0010100
......................................................................................................GTCAAGTCGTCGGAAAAGCG---C.......................................................................................................................................................................................................2111.0010001
................................................................................................................................................................................AATGCAGCTAA--AGAAAAATCT..............................................................................................................................2111.0010100
...............................................................................................................................GAGAAGC-----------------------------------------GAATGCAGCTAA--AG......................................................................................................................................2111.0010100
.............................................................................................................CGTCGGAAAAGCG---CTGAGAAGC-----------------------------------------GA....................................................................................................................................................2411.0010100
......................................................................................................GTCAAGTCGTCGGAAAAGCG---CTGAGAAG................................................................................................................................................................................................2811.0010100
..........................................................GGGTGGA-AGCGGCTCAGATGTTCTTTG...............................................................................................................................................................................................................................................2711.0010100
......................................................................................................GTCAAGTCGTCGGAAAAGCG---CTGAGA..................................................................................................................................................................................................2611.0010001
.....................................................................................................................................C-----------------------------------------GAATGCAGCTAA--AGAAAAATCT..............................................................................................................................2311.0010100
................................................................................................................................................................................AATGCAGCTAA--AGAAAAATC...............................................................................................................................2011.0010001
..............................................................................................GTGCGCTGGTCAAGTCGTC....................................................................................................................................................................................................................1911.0010010
......................................................................................................................AGCG---CTGAGAAGC-----------------------------------------GAATG.................................................................................................................................................1811.0010001
..............................................................................................GTGCGCTGGTCAAGTCGT.....................................................................................................................................................................................................................1811.0011000
...................................................................................................CTGGTCAAGTCGTCGGAAAAGCG---CTGA....................................................................................................................................................................................................2711.0010100
...............................................................................................................................................................................................................................................ACAAGT-------A----AAA--GTGTT---------AGCCAGTTTGC......................................2611.0010100
........................................................................................................CAAGTCGTCGGAAAAGCG---CTGAGAAG................................................................................................................................................................................................2611.0010100
..........................................................................................................AGTCGTCGGAAAAGCG---CTGAGAA.................................................................................................................................................................................................2311.0010100
.....................................................................................................................................C-----------------------------------------GAATGCAGCTAA--AGAAA...................................................................................................................................1811.0010001
.................................................................................................CGCTGGTCAAGTCGTCGGA.................................................................................................................................................................................................................1911.0010001
..................................................................................................GCTGGTCAAGTCGTCGGAAAAGCG---CTGA....................................................................................................................................................................................................2811.0010100
....................................................CGCATCGGGTGGA-AGCGGC.............................................................................................................................................................................................................................................................1911.0010001
........................................................................TCAGATGTTCTTTGGAA-----G......................................................................................................................................................................................................................................1811.0010010
........................................................................TCAGATGTTCTTTGGAA-----GTGC...................................................................................................................................................................................................................................2111.0010010
.................................................................................................CGCTGGTCAAGTCGTCGG..................................................................................................................................................................................................................1811.0010010
......................................................................................GAA-----GTGCGCTGGTCAAGTCGTCGGA.................................................................................................................................................................................................................2511.0010100
..................................................GGCGCATCGGGTGGA-AGCGGCTCAGATG......................................................................................................................................................................................................................................................2811.0010100
...............................................................................................................................................................................GAATGCAGCTAA--AGAAAAAT................................................................................................................................2011.0010100
................................................................................................GCGCTGGTCAAGTCGTCGGAAAAGCG---........................................................................................................................................................................................................2611.0010100
......................................................................................................GTCAAGTCGTCGGAAAAG.............................................................................................................................................................................................................1811.0010001
..................................................................................................GCTGGTCAAGTCGTCGGA.................................................................................................................................................................................................................1811.0010010
....................................................................................................................................................................................................................................................T-------A----AAA--GTGTT---------AGCCAGTT.........................................1811.0010010
.............................................................................................................CGTCGGAAAAGCG---CTGAGAAGC-----------------------------------------GAATG.................................................................................................................................................2711.0011000
dm3
CG----------------------TCACCGGCTT-TTTTGCTTTTTAGCTGCCGCATCGAGTGAA--GCGGCTCAGATGTTCTTTGGAA-----GTGCGCTGGTCAAGTCGTCGGAAAAGCG---CCGAGAAGC-----------------------------------------AATTGCAGCTAA--AGAAAAATCTAGC--------------C----------AATT-------CACAAGT-------A----AAA--GTGTT---------AGTCAGTTTGTATAATAAATAC--------------ACAACGCAGTTGASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........................................................................AGATGTTCTTTGGAA-----GTG....................................................................................................................................................................................................................................1811817.0018170000000000000000000000100001000000002010000000000000000000000000000000000000000000000001300000200000000008112060000000000000010000000000000000000000000100000000194011115100000020000000060000524300000000000000000000393625608822131300000600001012016137190000391035465051814102691234110335913100000000006311583521102133378014261121202014360823341028321714502421024252410815110
..........................................................................AGATGTTCTTTGGAA-----GTGCG..................................................................................................................................................................................................................................201350.003500000000000000000000000000000000000020000000000000011006000000000000000000000000000000000010000010000000000000000000000000000000000000000000000000000100000000000000004000000000000000028000001000020100000001000000001302175186114000400000030010400000101302121500026161251000000000649122010141261263111301003333417131112015253013000053111230
..........................................................................AGATGTTCTTTGGAA-----GTGC...................................................................................................................................................................................................................................191261.00261000000000000000000000000000000000000000000000000010101000000000000000000000000000000000000000000000010200000000000000000000000000000000000000000000100100000000010010000000000000000000000000110001000000000000000000162021160000300000000010010001000050026010020020101101000000000001040000001140040600000001011322240911261611114512042810440
..........................................................................AGATGTTCTTTGGAA-----GTGCGCTGG..............................................................................................................................................................................................................................241155.00155000000000000000000000000000000000000000000000001020000000000000000000000000000000000000000000000000000000210000000000000000000000000000000000000000010000001000000010000000000000000000000010000000000000000000000000030003100124000010000000000001000020101031210200206300000000000103205000002100025361100001022356071037120010001324130
......................................................................................................GTCAAGTCGTCGGAAAAG.............................................................................................................................................................................................................181128.0012800000000000000000000000000000000000000000000000000000000000000000000000000000000000000030100000000000000105000000000000000000000000000000000000000000000000120046000000000000000000000000000000000010000000000000000305000000100000000100000070020010000015300120201010240110000000000220300000000600200000000001010000000100000000222000
..............................................................................................GTGCGCTGGTCAAGTCGT.....................................................................................................................................................................................................................181117.001170000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000010100001000000000000000000000000000010000010011000000000000000000000000000000000000004000000100000000000000000011000100000000000000010101110010202211551411221114200000000000281120003100302000001100102000800004001100102146010
..................................................................................................GCTGGTCAAGTCGTCGGA.................................................................................................................................................................................................................18193.00930000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000010000000000000000010000000000321700111410012120000000000000020500003000301101012000501152501003600001000057200
..........................................................................AGATGTTCTTTGGAA-----GTGCGC.................................................................................................................................................................................................................................21183.00830000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000100000000000000000000000000000000000000000000000000000000010000000000000000000000000000000100000000000000601110020010012000000000000021100000202100010102000020001000000002100100000000300201000000110242503436100110000012010
..........................................................................AGATGTTCTTTGGAA-----GTGCGCT................................................................................................................................................................................................................................22163.00630000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000010002003000000000000000010000002300101301000010001000000001010000000100000103000000100052802134100100101101010
..............................................................................................GTGCGCTGGTCAAGTCGTC....................................................................................................................................................................................................................19161.00610000000000000000000000000000000000000100000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000101000000000000000000000020000000000000000100000000000000000000000000000100001000000000000000000102001200100000100030104202349702020100010200
..........................................................................AGATGTTCTTTGGAA-----GTGCGCTGGT.............................................................................................................................................................................................................................25157.00570000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000001000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010011101000000000010011000000010000000000013000100000000001020100000000201301010000121103502324100000020001000
..........................................................................AGATGTTCTTTGGAA-----GTGCGCTG...............................................................................................................................................................................................................................23148.00480000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000002000000000000000100000000110000300004021100000000001000000000001200001000000000127102161200100000001010
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................................................................................................GCGCTGGTCAAGTCGTCGGAAAAGCG---........................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000000000000
.....................................................................................GGAA-----GTGCGCTGGTCAAGT........................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................AAGTCGTCGGAAAAGCG---CC......................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000100000000000000000000000000
........................................................................................................................................................................................................GC--------------C----------AATT-------CACAAGT-------A----AAA--G..............................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
.....................................................................................................GGTCAAGTCGTCGGAAAAGC............................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.............................................................................TGTTCTTTGGAA-----GTGCGCTGGTCA...........................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000100000000000000000000000000
..................................................................................................GCTGGTCAAGTCGTCGGAAAAGCG---CC......................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
..............................................................................GTTCTTTGGAA-----GTGCGCTGGTCAAG.........................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000100000000000000000000000
......................................................................................GAA-----GTGCGCTGGTCAAGT........................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000001000000000000000000
...............................................................................TTCTTTGGAA-----GTGCGCTGGT.............................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000100000000000000000
.......................................................................................................TCAAGTCGTCGGAAAAGCG---C.......................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000
..........................................................................AGATGTTCTTTGGAA-----GTGCGCATC..............................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................CTGGTCAAGTCGTCGGAAAAGCG---C.......................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000010000000000000000
.....................................................................................................................................................................................................CTAGC--------------C----------AATT-------CACAAGT-------A----AAA--GTGT...........................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................AAAAATCTAGC--------------C----------AATT-------CACAAGT-------.........................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................GTCAAGTCGTCGGAAAAGCG---CCGATC..................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................TGGAA-----GTGCGCTGGTCAAG.........................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................GTT---------AGTCAGTTTGTATAAT.................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
...................................................................................................................................................................................................................................................................A--GTGTT---------AGTCAGTTTGTAT....................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000001000000000000000000000
........................................................................................A-----GTGCGCTGGTCAAGTCGTCGGAAAAG.............................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................CAAGTCGTCGGAAAAGCG---CC......................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
......................................................................................................................AGCG---CCGAGAAGC-----------------------------------------AATTGCAGC.............................................................................................................................................2212.0020000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
.................................................................................................................GGAAAAGCG---CCGAGAAGC-----------------------------------------......................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................GAA-----GTGCGCTGGTCAAGTCGTC....................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000
.............................................................................................................................CCGAGAAGC-----------------------------------------AATTGCAGCTAA--A.......................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
........................................CTTTTTAGCTGCCGCATCGAGTGAA--GCG...............................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................GCAGCTAA--AGAAAAATCT..............................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000001000000000000000000000000000000000000000000000
...........................................................................GATGTTCTTTGGAA-----GTGC...................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000100000000000000000000000000
.................................................................................................................................GAAGC-----------------------------------------AATTGCAGCTAA--AGAA....................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................TTGGAA-----GTGCGCTGGTCAAGTC.......................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000001000000000000000000000000000000000000000000
........................................................................................................CAAGTCGTCGGAAAAGCG---CCGAG...................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000010000000000000000
..................................................................................................................................................................................................AATCTAGC--------------C----------AATT-------CACAAGT-------.........................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................TTTGGAA-----GTGCGCTGGTCAAGTC.......................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000000
.........................................................................CAGATGTTCTTTGGAA-----GTGCGC.................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000001000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................GC--------------C----------AATT-------CACAAGT-------A----AAA--GTGTT---------.................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000100000000000
.............................................................................................................................CCGAGAAGC-----------------------------------------AATTGCAGCTA...........................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100001000000000000000000
.................................................................................................CGCTGGTCAAGTCGTCGGAAAAGCG---........................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
...................................................................................................CTGGTCAAGTCGTCGGAAA...............................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................GC-----------------------------------------AATTGCAGCTAA--AGAAA...................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000010000000000000000000000000000000000000000000
..................................................................................................GCTGGTCAAGTCGTCGGAAAAGCG---CCGA....................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000
.................................................................................................................GGAAAAGCG---CCGAGAAGC-----------------------------------------AAT...................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................CTGGTCAAGTCGTCGGAAAAGCG---CCG.....................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
........................................................................TCAGATGTTCTTTGGAA-----GTT....................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000001000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................AATTGCAGCTAA--AGAAAAATC...............................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000100000000000000000000000000000000000
..........................................................................AGATGTTCTTTGGAA-----GTA....................................................................................................................................................................................................................................1821.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000
droEre2
C-------------------------ACCGGCTT--TTTGCTTTTTAGCTGGCTCATCGACCGAA--TCGCCTCAGATGTTCTTTGGAA-----GTGCGCTGGTCAAGACGTGGGAAAAGCG---CTGAGAAGC-----------------------------------------GAGTGCAGCA-A-AAGAAAAATCTAGC--------------C----------AATT-------CACAAGT-------A----AAA--GTGTT---------ACCCAGTTTGCA------ATAC--------------ACACCGCAGTATASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............................................................................GTTCTTTGGAA-----GTGCGCTGGT.............................................................................................................................................................................................................................2115.0050000005
..............................................................................................GTGCGCTGGTCAAGACGTGGGA.................................................................................................................................................................................................................2213.0031000200
..........................................................................AGATGTTCTTTGGAA-----GTGC...................................................................................................................................................................................................................................1913.0030000300
.....................................................................................................................................................................................................CTAGC--------------C----------AATT-------CACAAGT-------A----AAA--GT.............................................................2313.0030000120
..................................................................................................GCTGGTCAAGACGTGGGA.................................................................................................................................................................................................................1812.0020000110
.................................................................................CTTTGGAA-----GTGCGCTGGTC............................................................................................................................................................................................................................1912.0020001100
..........................................................................AGATGTTCTTTGGAA-----GTG....................................................................................................................................................................................................................................1812.0020000110
..............................................................................................GTGCGCTGGTCAAGACGTG....................................................................................................................................................................................................................1912.0020001010
.................................................................................CTTTGGAA-----GTGCGCTGGTCAAGAC.......................................................................................................................................................................................................................2412.0021000010
..........................................................................AGATGTTCTTTGGAA-----GTGCGCTGGT.............................................................................................................................................................................................................................2512.0020000110
................................................................................................................................................................................AGTGCAGCA-A-AAGAAAAAT................................................................................................................................1912.0020001100
...............................................................................................................................GAGAAGC-----------------------------------------GAGTGCAGCA-A-AAG......................................................................................................................................2112.0020001010
..................................................................................TTTGGAA-----GTGCGCTGGTCA...........................................................................................................................................................................................................................1911.0010000010
..............................................................................................................................TGAGAAGC-----------------------------------------GAGTGCAGCA-A-AAGA.....................................................................................................................................2311.0010000100
...................................................................................................................................................................................................................................................GT-------A----AAA--GTGTT---------ACCCAGTTTGC......................................2211.0010000010
..............................................................................GTTCTTTGGAA-----GTGCGCTGGTCAAGAC.......................................................................................................................................................................................................................2711.0010100000
.......................................................................................................................................................................................................AGC--------------C----------AATT-------CACAAGT-------A----AAA--GT.............................................................2111.0010000100
..................................................................................................................................................................................................................................................................AA--GTGTT---------ACCCAGTTTGC......................................1811.0010000010
.....................................................................................................GGTCAAGACGTGGGAAAAGCG---CT......................................................................................................................................................................................................2311.0010000100
.......................................................................................................................GCG---CTGAGAAGC-----------------------------------------GAGTGCAGCA-A-AAGA.....................................................................................................................................2711.0010000010
...............................................................................................................................GAGAAGC-----------------------------------------GAGTGCAGCA-A-AAGAAAAAT................................................................................................................................2711.0010000100
...............................................................................................................................GAGAAGC-----------------------------------------GAGTGCAGCA-A-AAGAAA...................................................................................................................................2411.0010000100
....................................................................................................................................................................................................................................................................................ACCCAGTTTGCA------ATAC--------------ACACCGCA.....2411.0010000100
..............................................................................................................GTGGGAAAAGCG---CTGAGAAG................................................................................................................................................................................................2011.0010000100
.....................................................................................................................................................................................AGCA-A-AAGAAAAATCTAGC--------------C----------..................................................................................................2011.0010100000
................................................................................TCTTTGGAA-----GTGCGCTGGTC............................................................................................................................................................................................................................2011.0010000010
....................................................................................TGGAA-----GTGCGCTGGTCAAGACGT.....................................................................................................................................................................................................................2311.0011000000
................................................................................................................................................................................................AAAATCTAGC--------------C----------AATT-------CACAAGT-------A----....................................................................2311.0011000000
.................................................................................CTTTGGAA-----GTGCGCTGGTCAAGACGT.....................................................................................................................................................................................................................2611.0010000100
................................................................................................GCGCTGGTCAAGACGTGGGAAAAGCG---........................................................................................................................................................................................................2611.0010000010
...................................................................................................................AAAAGCG---CTGAGAAGC-----------------------------------------GAGTGCAGC.............................................................................................................................................2511.0010100000
..............................................................................GTTCTTTGGAA-----GTGCGCTGGTCA...........................................................................................................................................................................................................................2311.0010000010
..................................................................................................................................................................................................AATCTAGC--------------C----------AATT-------CACAAGT-------.........................................................................2011.0010000010
..................................................................................................GCTGGTCAAGACGTGGGAA................................................................................................................................................................................................................1911.0010000100
........................................................................................................CAAGACGTGGGAAAAGCG---CT......................................................................................................................................................................................................2011.0010000100
.......................................................................................................TCAAGACGTGGGAAAAGCG---........................................................................................................................................................................................................1911.0010000010
................................................................................................GCGCTGGTCAAGACGTGGGA.................................................................................................................................................................................................................2011.0010000100
...................................................................................................................AAAAGCG---CTGAGAAGC-----------------------------------------GAGTGCA...............................................................................................................................................2311.0011000000
......................................................................................................GTCAAGACGTGGGAAAAGCG---CTGA....................................................................................................................................................................................................2411.0010000100
.............................................................................................................CGTGGGAAAAGCG---CTGAGAAGC-----------------------------------------GAGTGC................................................................................................................................................2811.0010100000
..............................................................................................................GTGGGAAAAGCG---CTGAGAAGC-----------------------------------------......................................................................................................................................................2111.0010000100
.....................................................................................................................AAGCG---CTGAGAAGC-----------------------------------------GAGTGCAGC.............................................................................................................................................2311.0010000010
............................................................................................................ACGTGGGAAAAGCG---CTGAG...................................................................................................................................................................................................1911.0010000100
..................................................................................................GCTGGTCAAGACGTGGGAAAAGC............................................................................................................................................................................................................2311.0010000100
...............................................................................................................................................................................................................................................ACAAGT-------A----AAA--GTGTT---------ACCCAGTTTGC......................................2611.0010000100
..............................................................................GTTCTTTGGAA-----GTGCGCTGGTCAAGA........................................................................................................................................................................................................................2611.0011000000
..................................................................................TTTGGAA-----GTGCGCTGGTC............................................................................................................................................................................................................................1811.0011000000
......................................................................................................................AGCG---CTGAGAAGC-----------------------------------------GAGTGCAGC.............................................................................................................................................2211.0010000010
....................................................................................................................AAAGCG---CTGAGAAGC-----------------------------------------GAGTGC................................................................................................................................................2111.0010001000
.................................................................................................................................................................................................................................................AAGT-------A----AAA--GTGTT---------ACCCAGTT.........................................2111.0010000100
.....................................................................................................................................C-----------------------------------------GAGTGCAGCA-A-AAGAAAAATCTA.............................................................................................................................2411.0010000010
......................................................................................................GTCAAGACGTGGGAAAAGCG---CTG.....................................................................................................................................................................................................2311.0010000010
.........................................................................................................................................................................................................................................................................TT---------ACCCAGTTTGCA------ATAC--------------A............1911.0011000000
.......................................................................................................................................................................................................AGC--------------C----------AATT-------CACAAGT-------A----AAA--GTGT...........................................................2311.0010000100
......................................................................................GAA-----GTGCGCTGGTCAAGAC.......................................................................................................................................................................................................................1911.0010000100
......................................................................................................GTCAAGACGTGGGAAAAGCG---........................................................................................................................................................................................................2011.0010000100
..................................................................................................GCTGGTCAAGACGTGGGAAA...............................................................................................................................................................................................................2011.0010000010
....................................................................................................................................................................................CAGCA-A-AAGAAAAATCTAG............................................................................................................................1911.0010000010
...........................................................................GATGTTCTTTGGAA-----GTGCGCT................................................................................................................................................................................................................................2111.0010000100
.............................................................................................................CGTGGGAAAAGCG---CTGAGAAGC-----------------------------------------......................................................................................................................................................2211.0010000100
...............................................................................................................TGGGAAAAGCG---CTGAGAAGC-----------------------------------------......................................................................................................................................................2011.0010100000
...........................................................................................................GACGTGGGAAAAGCG---CTGAGAAGC-----------------------------------------GA....................................................................................................................................................2611.0010000010
......................................................................................................................AGCG---CTGAGAAGC-----------------------------------------GAGTGCAGCA-A-AAG......................................................................................................................................2711.0010001000
.............................................................................TGTTCTTTGGAA-----GTGCGCTG...............................................................................................................................................................................................................................2011.0010000010
................................................................................................................GGGAAAAGCG---CTGAGAAGC-----------------------------------------GA....................................................................................................................................................2111.0010000100
......................................................................................................GTCAAGACGTGGGAAAAG.............................................................................................................................................................................................................1811.0010000010
..............................................................................GTTCTTTGGAA-----GTGCGCTGG..............................................................................................................................................................................................................................2011.0011000000
.............................................................................TGTTCTTTGGAA-----GTGCGCTGGT.............................................................................................................................................................................................................................2211.0010000010
.......................................................................................................TCAAGACGTGGGAAAAGC............................................................................................................................................................................................................1811.0010000010
.................................................................................CTTTGGAA-----GTGCGCTGGTCAAGA........................................................................................................................................................................................................................2311.0011000000
droYak3
C---------------------------CGGCT----GTGCTTTTTAGCTGGCTCATCGGCAGAA--TCGCCTCAGATGTTCTTTGAAA-----GTGCGCTGGTCAAGACGTCG-------------------------------------------------------------AAGTGCAGCTAAAGAGAAAAATCTAGC--------------C----------AATT-AC-AAGTACAAGT-------A----AAA--GTGTT---------ACCCAGTTTGC--------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................................................................GTTCTTTGAAA-----GTGCGCTGGT.............................................................................................................................................................................................................................2114.00400000040000
.....................................................................................GAAA-----GTGCGCTGGTCAAGA........................................................................................................................................................................................................................1913.00300000030000
.........................................................................................................AAGACGTCG-------------------------------------------------------------AAGTGCAGCTAAAGAGAAAAA.................................................................................................................................3013.00300000000003
.................................................................................CTTTGAAA-----GTGCGCTGGTCAAGACGTC....................................................................................................................................................................................................................2713.00300000120000
...........................................................................................................GACGTCG-------------------------------------------------------------AAGTGCAGCTAA..........................................................................................................................................1912.00201010000000
..............................................................................................................GTCG-------------------------------------------------------------AAGTGCAGCTAAAGAG......................................................................................................................................2012.00200000020000
........................................................................................A-----GTGCGCTGGTCAAGACG......................................................................................................................................................................................................................1812.00220000000000
..................................................................................TTTGAAA-----GTGCGCTGGTCAAGACGT.....................................................................................................................................................................................................................2512.00200000020000
.................................................................................................................G-------------------------------------------------------------AAGTGCAGCTAAAGAGAAAA..................................................................................................................................2112.00200000020000
...................................................................................TTGAAA-----GTGCGCTGGTCAAGACGT.....................................................................................................................................................................................................................2412.00201000010000
.....................................................................................GAAA-----GTGCGCTGGTCAAGACGTC....................................................................................................................................................................................................................2312.00200000020000
........................................................................................................CAAGACGTCG-------------------------------------------------------------AAGTGCAGCT............................................................................................................................................2012.00210000010000
..............................................................................................................GTCG-------------------------------------------------------------AAGTGCAGCTAAAGAGAA....................................................................................................................................2212.00220000000000
..................................................................................................GCTGGTCAAGACGTCG-------------------------------------------------------------AAGTGC................................................................................................................................................2212.00200000020000
..............................................................................................GTGCGCTGGTCAAGACGTCG-------------------------------------------------------------AAGTGC................................................................................................................................................2612.00200000020000
...................................................................................................CTGGTCAAGACGTCG-------------------------------------------------------------AAGTGCAGCT............................................................................................................................................2512.00200000020000
.....................................................................................................................................................................................................CTAGC--------------C----------AATT-AC-AAGTACAAGT-------.........................................................................2211.00100000010000
...................................................................................TTGAAA-----GTGCGCTGGTCAAGACGTC....................................................................................................................................................................................................................2511.00100000010000
..............................................................................GTTCTTTGAAA-----GTGCGCTGGTCAAG.........................................................................................................................................................................................................................2511.00100000010000
........................................................................................A-----GTGCGCTGGTCAAGACGTCG-------------------------------------------------------------......................................................................................................................................................2111.00100000010000
..............................................................................................GTGCGCTGGTCAAGACGTC....................................................................................................................................................................................................................1911.00100000010000
..........................................................................AGATGTTCTTTGAAA-----GTGC...................................................................................................................................................................................................................................1911.00100100000000
..................................................................................................GCTGGTCAAGACGTCG-------------------------------------------------------------AAGTGCAGCTA...........................................................................................................................................2711.00101000000000
........................................................................................................CAAGACGTCG-------------------------------------------------------------AAGTGCAGCTAAAGAG......................................................................................................................................2611.00100000010000
..............................................................................................................GTCG-------------------------------------------------------------AAGTGCAGCTAAAGAGAAAAATCT..............................................................................................................................2811.00100000010000
................................................................................................................................................................................................AAAATCTAGC--------------C----------AATT-AC-AA........................................................................................1911.00101000000000
.......................................................................................AA-----GTGCGCTGGTCAAGACGTC....................................................................................................................................................................................................................2111.00100000010000
........................................................................................................CAAGACGTCG-------------------------------------------------------------AAGTGCAGCTAAAGA.......................................................................................................................................2511.00101000000000
......................................................................................................GTCAAGACGTCG-------------------------------------------------------------AAGTGCAGC.............................................................................................................................................2111.00100100000000
........................................................................................A-----GTGCGCTGGTCAAGACGTCG-------------------------------------------------------------AAGT..................................................................................................................................................2511.00100100000000
.......................................................................................AA-----GTGCGCTGGTCAAGACGT.....................................................................................................................................................................................................................2011.00100000010000
..............................................................................................GTGCGCTGGTCAAGACGTCG-------------------------------------------------------------......................................................................................................................................................2011.00100000010000
......................................................................................AAA-----GTGCGCTGGTCAAGACGTC....................................................................................................................................................................................................................2211.00100000010000
.........................................................................................................AAGACGTCG-------------------------------------------------------------AAGTGCAGCTAAAG........................................................................................................................................2311.00100000010000
................................................................................TCTTTGAAA-----GTGCGCTGGTCAAG.........................................................................................................................................................................................................................2311.00100000010000
..................................................................................................................................................................................TGCAGCTAAAGAGAAAAATCTAG............................................................................................................................2311.00110000000000
...................................................................................TTGAAA-----GTGCGCTGGTCAA..........................................................................................................................................................................................................................1911.00100000010000
.....................................................................................................GGTCAAGACGTCG-------------------------------------------------------------AAGTGCAGCTAAAGAG......................................................................................................................................2911.00100100000000
....................................................................................TGAAA-----GTGCGCTGGTCAAGACGT.....................................................................................................................................................................................................................2311.00100000010000
.....................................................................................................GGTCAAGACGTCG-------------------------------------------------------------AAGTGCAG..............................................................................................................................................2111.00101000000000
..............................................................................................................GTCG-------------------------------------------------------------AAGTGCAGCTAAAGAGA.....................................................................................................................................2111.00100000010000
..................................................................................................GCTGGTCAAGACGTCG-------------------------------------------------------------AAGT..................................................................................................................................................2011.00100000010000
.......................................................................................AA-----GTGCGCTGGTCAAGACGTCG-------------------------------------------------------------AAG...................................................................................................................................................2511.00100000010000
..............................................................................................GTGCGCTGGTCAAGACGTCG-------------------------------------------------------------AAGT..................................................................................................................................................2411.00100000010000
.....................................................................................................GGTCAAGACGTCG-------------------------------------------------------------AAGTGCAGC.............................................................................................................................................2211.00100100000000
.......................................................................................................TCAAGACGTCG-------------------------------------------------------------AAGTGCAGCTAAAGAGA.....................................................................................................................................2811.00110000000000
........................................................................................................CAAGACGTCG-------------------------------------------------------------AAGTGCAGC.............................................................................................................................................1911.00100000010000
...................................................................................................................................................................................GCAGCTAAAGAGAAAAATCT..............................................................................................................................2011.00100000010000
......................................................................................................GTCAAGACGTCG-------------------------------------------------------------AAGTGCAGCTAAAGA.......................................................................................................................................2711.00110000000000
........................................................................................A-----GTGCGCTGGTCAAGACGTCG-------------------------------------------------------------AAGTGC................................................................................................................................................2711.00100100000000
.........................................................................................................................................................................................AAAGAGAAAAATCTAGC--------------C----------AATT-AC-AAGT......................................................................................2811.00100000010000
................................................................................TCTTTGAAA-----GTGCGCTGGTCAAGAC.......................................................................................................................................................................................................................2511.00100000010000
......................................................................................................GTCAAGACGTCG-------------------------------------------------------------AAGTGC................................................................................................................................................1811.00100100000000
..................................................................................TTTGAAA-----GTGCGCTGGTCAAGA........................................................................................................................................................................................................................2211.00100000010000
........................................................................................................................................................................................................GC--------------C----------AATT-AC-AAGTACAAGT-------.........................................................................1911.00101000000000
................................................................................TCTTTGAAA-----GTGCGCTGGTCA...........................................................................................................................................................................................................................2111.00100000010000
........................................................................................................CAAGACGTCG-------------------------------------------------------------AAGTGCAGCC............................................................................................................................................2011.00100100000000
................................................................................................................CG-------------------------------------------------------------AAGTGCAGCTAAAGAGA.....................................................................................................................................1911.00100000010000
..............................................................................................GTGCGCTGGTCAAGACGTCG-------------------------------------------------------------A.....................................................................................................................................................2111.00100010000000
..........................................................................AGATGTTCTTTGAAA-----GTG....................................................................................................................................................................................................................................1811.00101000000000
.................................................................................CTTTGAAA-----GTGCGCTGGTCAAGAC.......................................................................................................................................................................................................................2411.00100000010000
.....................................................................................................GGTCAAGACGTCG-------------------------------------------------------------AAGTGCA...............................................................................................................................................2011.00101000000000
.......................................................................................................................................................................................................AGC--------------C----------AATT-AC-AAGTACAAGT-------.........................................................................2011.00100000010000
.....................................................................................................GGTCAAGACGTCG-------------------------------------------------------------AAGTGC................................................................................................................................................1911.00101000000000
.................................................................................................CGCTGGTCAAGACGTCG-------------------------------------------------------------AAGTGCAGCT............................................................................................................................................2711.00100000010000
.........................................................................................................................................................................................AAAGAGAAAAATCTAGC--------------C----------AATT-.............................................................................................2211.00100000010000
.............................................................................TGTTCTTTGAAA-----GTGCGCTGGTCAA..........................................................................................................................................................................................................................2511.00100000010000
..............................................................................................GTGCGCTGGTCAAGACGTCG-------------------------------------------------------------AAGTG.................................................................................................................................................2511.00100000010000
.........................................................................................................AAGACGTCG-------------------------------------------------------------AAGTGCAGCG............................................................................................................................................1911.00110000000000
......................................................................................................................................................................................................................................T-AC-AAGTACAAGT-------A----AAA--GT.............................................................1911.00100000010000
..................................................................................................GCTGGTCAAGACGTCG-------------------------------------------------------------AAGTGCA...............................................................................................................................................2311.00100000010000
..................................................................................................................................................................................................AATCTAGC--------------C----------AATT-AC-AAGTACAAGT-------.........................................................................2511.00101000000000
..............................................................................................GTGCGCTGGTCAAGACGTCG-------------------------------------------------------------AAG...................................................................................................................................................2311.00100100000000
....................................................................................TGAAA-----GTGCGCTGGTCAAG.........................................................................................................................................................................................................................1911.00100000010000
.................................................................................CTTTGAAA-----GTGCGCTGGTCAAGACGT.....................................................................................................................................................................................................................2611.00100000010000
.....................................................................................................GGTCAAGACGTCG-------------------------------------------------------------AAGTGCAGCTAAAG........................................................................................................................................2711.00100000010000
.............................................................................TGTTCTTTGAAA-----GTGCGCTGGTCAAGA........................................................................................................................................................................................................................2711.00100000010000
........................................................................................A-----GTGCGCTGGTCAAGACGTCG-------------------------------------------------------------AAGTG.................................................................................................................................................2611.00100000010000
droEug1
CG----------------------TCACCGGCTT-TTTTGCTTTTTAGCTGGCGCATCGACTGAA-ATCATTTCAGATGTTCTTTGGAA-----GTGCGCTGGTCAAGACGTGAGAAAAGC--AACC--GTAGC-----------------------------------------TAGTGCAGCTAA-AAGAAAAATCTAGC--------------C----------AATT-------TACAAGT-------A----AAA--GTGCC---------AACCAGTTTAC--------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
CG----------------------TCACCGGCTT-TTTTGCTTTTTAGCTGGCGCATCGACTGAA-AACGCCTCAGATGTTCTTTGGAA-----GTGCGCTGGTCAAGACGTGAGAAAATCGTATCC--CAAGC-----------------------------------------GAGTGCAGCGAA-GAGAAAAATCTAGC--------------C----------AATT-------CACAAGT-------A----AAA--GTGTT---------AACCAGTTTACC----------------------------CCCAGT---SizeHit CountTotal NormTotal
No Reads
droTak1
CG----------------------TCACCGGCTT-TTTTGCTTTTTAGCTGGCGCATCGACTGAA-AACGTTTCAGATGTTCTTTGGAA-----GTGCGCTGGTCAAGACGTGAGAAAATT--AGCC--GAAGC-----------------------------------------GAGTGCAGCTAA-GAGAAAAATCTAGC--------------C----------AATT-------CACCAGT-------A----AAA--GTGTT---------AACCAGTTTAC--------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
CG----------------------TGACCGGCTT-TTTTGCTTTTTAGCTGGCGCATCGACTGAA-AACGCTTCAGATGTTCTTTGGAA-----GTGCGCTGGTCAAGACGTGAGAAAAAT--ATCC--GAAGC-----------------------------------------GAGTGCAGCGAA-AAGAAAAATCTAGC--------------C----------AATT-------CACAAGT-------A----AAA--GTGTT---------AACCAGCTTACC--------------------------AACAGTG---CSizeHit CountTotal NormTotal
No Reads
droRho1
CG----------------------TCACCGGCTT-TTTTGCTTTTTAGCTGGCGCATCGACTGAA-AACTTTTCAGATGTTCTTTGGAA-----GTGCGCTGGTCAAGACGTGAAACAAATTCAGCC--AAAGC-----------------------------------------GAGTGCAGCTAA-GAGAAAAATCTAGC--------------C----------AATT-------CACAAGT-------A----AAA--GTGTT---------AACCAGTTTACC------AT----------------------CAG-TGCSizeHit CountTotal NormTotal
No Reads
droFic1
CG----------------------TCACCGGCTT-TTTTGCTTTTTAGCTGGCGCATCGACTGAA-ATCGTTTCAGATGTTCTTTGGAA-----GTGCGCTGGTCAAGACGTGAAAAAAAC---------AAGC-----------------------------------------AAGTGCAGCTAA-AAGAAAAATCTTGC--------------C----------AATT-------TACAAGT-------A----AAA--GTGTT---------AACCAGTTTACC--------------------------------GTT-GSizeHit CountTotal NormTotal
No Reads
droKik1
CG----------------------TCACCGGCTT-TTTTGCTTTTTAGCTGGCGCATCGACCGAG-CTCGCCTCAGATGTTCTTTGGAA-----GTGCGCTGGTCAAGACGTAAAACA-------------AAA-----------------------------------------AAGTGCAGCTAA-AAGAAAAATCTA-------------------------------------------GT-------A----AAA--GTGCT---------AAAGAGTTAAAA------AA----------------------------ASizeHit CountTotal NormTotal
No Reads
droAna3
C---------------------------CGGCTT-TTTTGCTTTTTAGCTGGCGCATCGGCGTTA-GCGGGCTCAGATGTTCTTTGGAA-----GTGCGCTGGCCAAGACGT-----------------------------------------------------------------GTGCAGCGAA-AAGAAAGATCTGCT--------------T----------TTGTTAAAAGTTAAAAGTTTGAAAGA----AAA--GTGTC---------AA-----------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................................................................................GGCCAAGACGT-----------------------------------------------------------------GTGCAGCGAA-AAGA.....................................................................................................................................2518.008130040
.....................................................................................................GGCCAAGACGT-----------------------------------------------------------------GTGCAGCGAA-AAG......................................................................................................................................2414.004200020
..............................................................................................................GT-----------------------------------------------------------------GTGCAGCGAA-AAGAAAGAT................................................................................................................................2113.003000012
........................................................................................A-----GTGCGCTGGCCAAGACGT-----------------------------------------------------------------GTGCA...............................................................................................................................................2412.002200000
......................................................................................................................................................................................GCGAA-AAGAAAGATCTGC............................................................................................................................1812.002000002
.....................................................................................................GGCCAAGACGT-----------------------------------------------------------------GTGCAGCG............................................................................................................................................1912.002010010
.........................................................................................................AAGACGT-----------------------------------------------------------------GTGCAGCGAA-AAGA.....................................................................................................................................2112.002200000
.....................................................................................................GGCCAAGACGT-----------------------------------------------------------------GTGCAGCGAA-A........................................................................................................................................2212.002010010
..............................................................................................................................................................................................GAAAGATCTGCT--------------T----------TTGTTAAAAGT.......................................................................................2411.001100000
..........................................................................AGATGTTCTTTGGAA-----GTGCGCTGGCC............................................................................................................................................................................................................................2611.001000001
......................................................................................................................................................................................GCGAA-AAGAAAGATCTGCT--------------T----------TT................................................................................................2211.001100000
..................................................................................................................................................................................................................................................AGTTTGAAAGA----AAA--GTGTC---------.................................................1911.001000010
....................................................................................................TGGCCAAGACGT-----------------------------------------------------------------GTGCAGCGAA-.........................................................................................................................................2211.001100000
.................................................................................................................................................................................GTGCAGCGAA-AAGAAAGATCT..............................................................................................................................2111.001000010
..............................................................................................................GT-----------------------------------------------------------------GTGCAGCGAA-AAGAAAGATC...............................................................................................................................2211.001000010
...............................................................................................................................................................................................................................................AAAAGTTTGAAAGA----AAA--GTGT...........................................................2111.001000010
..........................................................................AGATGTTCTTTGGAA-----GTG....................................................................................................................................................................................................................................1811.001000001
..........................................................................AGATGTTCTTTGGAA-----GTGCGCTGG..............................................................................................................................................................................................................................2411.001000001
.....................................................................................................GGCCAAGACGT-----------------------------------------------------------------GTGCAGCGAA-AAGAAA...................................................................................................................................2711.001000001
..........................................................................AGATGTTCTTTGGAA-----GTGCGCT................................................................................................................................................................................................................................2211.001000010
...................................................................................................................................................................................GCAGCGAA-AAGAAAGATCT..............................................................................................................................1911.001010000
......................................................................................................GCCAAGACGT-----------------------------------------------------------------GTGCAGCG............................................................................................................................................1811.001100000
......................................................................................................GCCAAGACGT-----------------------------------------------------------------GTGCAGCGAA-AAGA.....................................................................................................................................2411.001100000
..........................................................................................................AGACGT-----------------------------------------------------------------GTGCAGCGAA-AAG......................................................................................................................................1911.001001000
........................................................................................A-----GTGCGCTGGCCAAGACG......................................................................................................................................................................................................................1811.001000001
..........................................................................AGATGTTCTTTGGAA-----GTGCGC.................................................................................................................................................................................................................................2111.001000010
................................................................................................................................................................................................................................................AAAGTTTGAAAGA----AAA--GTGT...........................................................2011.001000010
..............................................................................................................GT-----------------------------------------------------------------GTGCAGCGAA-AAGAAAGATCTG.............................................................................................................................2411.001000001
..........................................................................AGATGTTCTTTGGAA-----GTGC...................................................................................................................................................................................................................................1911.001000001
........................................................................................A-----GTGCGCTGGCCAAGACGT-----------------------------------------------------------------GTGCAGC.............................................................................................................................................2611.001010000
............................................................................................................................................................................................................................................GTTAAAAGTTTGAAAGA----AAA--GTGT...........................................................2411.001000010
..................................................................................................GCTGGCCAAGACGT-----------------------------------------------------------------GTGCAG..............................................................................................................................................2011.001000001
.............................................................................................................................................................................................................................................TTAAAAGTTTGAAAGA----AAA--GT.............................................................2111.001000010
..................................................................................................................................................................................................................................................AGTTTGAAAGA----AAA--GTGTC---------AA-----------------------------------------------2111.001000001
..............................................................................................................GT-----------------------------------------------------------------GTGCAGCGAA-AAGAAAGATCTGC............................................................................................................................2511.001000001
................................................................................................GCGCTGGCCAAGACGT-----------------------------------------------------------------GTG.................................................................................................................................................1911.001000100
......................................................................................................................................................................................GCGAA-AAGAAAGATCTGCT--------------T----------..................................................................................................2011.001000010
........................................................................................................CAAGACGT-----------------------------------------------------------------GTGCAGCGAA-AA.......................................................................................................................................2011.001000010
................................................................................................GCGCTGGCCAAGACGT-----------------------------------------------------------------GTGCAGC.............................................................................................................................................2311.001000001
..............................................................................GTTCTTTGGAA-----GTGCGCTGGCC............................................................................................................................................................................................................................2211.001010000
.....................................................................................................................................................................................AGCGAA-AAGAAAGATCTGCT--------------T----------TT................................................................................................2311.001000010
.................................................................................................................................................................................GTGCAGCGAA-AAGAAAGATCTG.............................................................................................................................2211.001100000
droBip1
GC----------------------TCGCCGGCTT-TTTTGCTTTTTAGCTGGCGCATCGGCGTTA-GCGGGCTCAGATGTTCTTTGGAA-----GTGCGCTGGTCAAGACGT-----------------------------------------------------------------GTGCAGCGAA-AAGAAAAATCTACT------------T-C----------AAGT-------CTCAAGCT--AAAGA----AAA--GTGCT---------AACTAAAGTGCC------ATTC--------------AAAA--------TSizeHit CountTotal NormTotal
No Reads
dp5
C---------------------------CGGCCTGTTTTGCTT-TTAGCTGCCGCTCCGGCGCATTTACGACTGAGTTGTTCTTTGGAA-----GTGCGCTGGTCAAGACGCGAAA--A-----TCT--GAAACA----------------------------------------AAGTGCATCAAA-GAGAAAGATCCGTC--------------T----------AA------AAATATTAGT-------A----AAA--GTGTTAAAAGAAAG----TGCTAGCAGTACTAATTGACAA------------AATTGTGCTACSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................................................................GAGTTGTTCTTTGGAA-----GTG....................................................................................................................................................................................................................................1912.0020100001000
..................................................................................TTTGGAA-----GTGCGCTGGTCAAGATC......................................................................................................................................................................................................................2412.0020000000200
...................................................................................................CTGGTCAAGACGCGAAA--A-----TCT--....................................................................................................................................................................................................2111.0011000000000
...............................................................................................................................................................................................AAAGATCCGTC--------------T----------AA------AAATATTAGT-------A----AA..................................................................2711.0010100000000
...........................................................................GTTGTTCTTTGGAA-----GTGCGCTG...............................................................................................................................................................................................................................2211.0010100000000
........................................................................................A-----GTGCGCTGGTCAAGACGCGAAA--A-----TCT--....................................................................................................................................................................................................2711.0010100000000
.........................................................................................................AAGACGCGAAA--A-----TCT--GAAACA----------------------------------------AAGTGCA...............................................................................................................................................2811.0010100000000
.......................................................................................AA-----GTGCGCTGGTCAAGAC.......................................................................................................................................................................................................................1811.0010001000000
........................................................................................A-----GTGCGCTGGTCAAGACG......................................................................................................................................................................................................................1811.0010100000000
.........................................................................................................AAGACGCGAAA--A-----TCT--GAAACA----------------------------------------A.....................................................................................................................................................2211.0010100000000
................................................................................TCTTTGGAA-----GTGCGCTGGTCAAGAC.......................................................................................................................................................................................................................2511.0010100000000
..................................................................................................GCTGGTCAAGACGCGAAA--A-----TCT--G...................................................................................................................................................................................................2311.0010100000000
..................................................................................................GCTGGTCAAGACGCGAAA--A-----TCT--GAA.................................................................................................................................................................................................2511.0010000000001
..................................................................................................GCTGGTCAAGACGCGAAA--A-----TCT--GAAAC...............................................................................................................................................................................................2711.0010100000000
...........................................................................................................GACGCGAAA--A-----TCT--GAAACA----------------------------------------AAGTGC................................................................................................................................................2511.0010100000000
............................................................................................................................TCT--GAAACA----------------------------------------AAGTGCATCAAA-GAG......................................................................................................................................2411.0010000000001
...........................................................................GTTGTTCTTTGGAA-----GTGCGCTGGT.............................................................................................................................................................................................................................2411.0010100000000
.............................................................................................................................................................................................AGAAAGATCCGTC--------------T----------AA------AAAT......................................................................................2011.0010000100000
..................................................................................................................................AAACA----------------------------------------AAGTGCATCAAA-GA.......................................................................................................................................1911.0010100000000
......................................................................................................................................................................................................................................................................GTGTTAAAAGAAAG----TGCTAGCAGTA..................................2511.0010000001000
........................................................................................................................................................................................................................................................................GTTAAAAGAAAG----TGCTAGCAGTA..................................2311.0010100000000
............................................................................................................................................................................................................................................................................AAAGAAAG----TGCTAGCAGTAC.................................2011.0010100000000
.................................................................................CTTTGGAA-----GTGCGCTGGTCAAGACGC.....................................................................................................................................................................................................................2611.0010000000001
.........................................................................GAGTTGTTCTTTGGAA-----GTGC...................................................................................................................................................................................................................................2011.0010000001000
droPer2
C---------------------------CGGCCTGTTTTGCTT-TTAGCTGCCGCTCCGGCGCATTTACGACTGAGTTGTTCTTTGGAA-----GTGCGCTGGTCAAGACGCGAAA--A-----TCT--GAAACA----------------------------------------AAGTGCAGCAAA-GAGAAAGATCCGTC--------------T----------AA------AAATATTAGT-------A----AAA--GTGTTAAAAGAAAG----TGTTAGCAGTACTAATTTACAA------------AATTGTGCTACSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...............................................................................................................CGAAA--A-----TCT--GAAACA----------------------------------------AAGTGC................................................................................................................................................2113.003300000
...................................................................................................................................AACA----------------------------------------AAGTGCAGCAAA-GAGA.....................................................................................................................................2013.003000003
......................................................................................................................................A----------------------------------------AAGTGCAGCAAA-GAGAAAG..................................................................................................................................2011.001000001
..............................................................................................GTGCGCTGGTCAAGACGC.....................................................................................................................................................................................................................1811.001000010
......................................................................................................................................A----------------------------------------AAGTGCAGCAAA-GAGAAA...................................................................................................................................1911.001000001
.........................................................................GAGTTGTTCTTTGGAA-----GTGCGCT................................................................................................................................................................................................................................2311.001000010
..................................................................................TTTGGAA-----GTGCGCTGGTCAAGACGC.....................................................................................................................................................................................................................2511.001100000
.......................................................................................AA-----GTGCGCTGGTCAAGAC.......................................................................................................................................................................................................................1811.001001000
........................................................................................A-----GTGCGCTGGTCAAGACGC.....................................................................................................................................................................................................................1911.001010000
...................................................................................TTGGAA-----GTGCGCTGGTCAAGAC.......................................................................................................................................................................................................................2211.001000001
...................................................................................................CTGGTCAAGACGCGAAA--A-----TCT--G...................................................................................................................................................................................................2211.001001000
.........................................................................GAGTTGTTCTTTGGAA-----GTG....................................................................................................................................................................................................................................1911.001100000
...................................................................................................................................................................................................................................................GT-------A----AAA--GTGTTAAAAGAAAG----TGT..........................................2311.001000001
...............................................................................................................................................................................................................................................ATTAGT-------A----AAA--GTGTTAAAAGAA...................................................2211.001000001
..........................................................................AGTTGTTCTTTGGAA-----GTGC...................................................................................................................................................................................................................................1911.001000001
........................................................................................A-----GTGCGCTGGTCAAGAGT......................................................................................................................................................................................................................1850.201000001
droWil2
------------------------------GTTT-TTTTGCTTTTTAGGCGACGCATCGCTGGGGAAACATTTTAGTTGTTCTTTGGAAGTGAAGTGCGCTGGTCAGAAAACAAAA----------CGAGA--CA--------G-AGCGAAAAAACAAAATAAAATAAACGCACAAAGCACAATTA--AAGAAAAATCTGTGAAAGAAAAAAAAACAAATTTTACAACA------AAAGAG-ACA-------AAAGCAAAGTGTGTT---------AACGAAAAATCC-------TTGCTAAAAATAAGCCAAAAATAAGGCCAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........................................................................................................CAGAAAACAAAA----------CGAGA--CA--------G-AGC.................................................................................................................................................................................2313.00300300
.............................................................................................................AACAAAA----------CGAGA--CA--------G-AGC.................................................................................................................................................................................1813.00300021
..........................................................................AGTTGTTCTTTGGAAGTG.........................................................................................................................................................................................................................................1812.00200020
............................................................................................................AAACAAAA----------CGAGA--CA--------G-AGC.................................................................................................................................................................................1912.00200200
..............................................................................GTTCTTTGGAAGTGAAGTGCGCTGGT.............................................................................................................................................................................................................................2612.00200101
...................................................................................TTGGAAGTGAAGTGCGCTGGT.............................................................................................................................................................................................................................2112.00200200
..................................................................................TTTGGAAGTGAAGTGCGCTGGT.............................................................................................................................................................................................................................2212.00200020
................................................................................TCTTTGGAAGTGAAGTGC...................................................................................................................................................................................................................................1812.00200020
..........................................................................................TGAAGTGCGCTGGTCAGAAAACA....................................................................................................................................................................................................................2312.00200101
.........................................................................................GTGAAGTGCGCTGGTCAGAAAA......................................................................................................................................................................................................................2212.00200020
.................................................................................................................................GA--CA--------G-AGCGAAAAAACAAAATAAA.................................................................................................................................................................2411.00100100
.................................................................................CTTTGGAAGTGAAGTGCGCT................................................................................................................................................................................................................................2011.00100100
.................................................................................................................................................................................................................................AACA------AAAGAG-ACA-------AAAGCAAAGT...............................................................2311.00100100
.....................................................................................................GGTCAGAAAACAAAA----------CGAGA--CA--------G-AGC.................................................................................................................................................................................2611.00100100
...........................................................................................................AAAACAAAA----------CGAGA--CA--------G-AGC.................................................................................................................................................................................2011.00100100
................................................................................TCTTTGGAAGTGAAGTGCGCTG...............................................................................................................................................................................................................................2211.00101000
........................................................................................................CAGAAAACAAAA----------CGAGA--CA--------G-AG..................................................................................................................................................................................2211.00100010
.................................................................................CTTTGGAAGTGAAGTGCGCTGGT.............................................................................................................................................................................................................................2311.00100100
..............................................................................GTTCTTTGGAAGTGAAGTGC...................................................................................................................................................................................................................................2011.00100010
...................................................................................TTGGAAGTGAAGTGCGCTGGTCAGAAAAC.....................................................................................................................................................................................................................2911.00100100
..................................................................................................................AA----------CGAGA--CA--------G-AGCGAAAAAACAAA......................................................................................................................................................................2411.00110000
.........................................................................................GTGAAGTGCGCTGGTCAGAAAACAAA..................................................................................................................................................................................................................2611.00100100
...............................................................................................................................GAGA--CA--------G-AGCGAAAAAAC.........................................................................................................................................................................1811.00100010
............................................................................................................................................................................................................................TTTACAACA------AAAGAG-ACA-------AAAGCAA..................................................................2511.00101000
................................................................................TCTTTGGAAGTGAAGTGCGCTGGTC............................................................................................................................................................................................................................2511.00100100
..................................................................................TTTGGAAGTGAAGTGCGCTGGTCA...........................................................................................................................................................................................................................2411.00100010
..............................................................................GTTCTTTGGAAGTGAAGTGCG..................................................................................................................................................................................................................................2111.00100100
.........................................................................................GTGAAGTGCGCTGGTCAGAAAAC.....................................................................................................................................................................................................................2311.00100001
.................................................................................................CGCTGGTCAGAAAACAAAA----------CG.....................................................................................................................................................................................................2111.00110000
...................................................................................TTGGAAGTGAAGTGCGCTG...............................................................................................................................................................................................................................1911.00100100
............................................................................................AAGTGCGCTGGTCAGAAAACAAAA----------C......................................................................................................................................................................................................2511.00100001
............................................................................................................AAACAAAA----------CGAGA--CA--------G-AGCGAAAAAA..........................................................................................................................................................................2611.00100100
......................................................................................................GTCAGAAAACAAAA----------CGAGA--................................................................................................................................................................................................1911.00110000
..........................................................................................TGAAGTGCGCTGGTCAGAAAA......................................................................................................................................................................................................................2111.00100010
............................................................................................................AAACAAAA----------CGAGA--CA--------G-AG..................................................................................................................................................................................1811.00100010
..............................................................................................GTGCGCTGGTCAGAAAACAAAA----------.......................................................................................................................................................................................................2211.00100001
....................................................................................TGGAAGTGAAGTGCGCTGGTC............................................................................................................................................................................................................................2111.00100010
.........................................................................................................AGAAAACAAAA----------CGAGA--CA--------G-AGC.................................................................................................................................................................................2211.00100100
...............................................................................TTCTTTGGAAGTGAAGTGC...................................................................................................................................................................................................................................1911.00100010
.................................................................................CTTTGGAAGTGAAGTGCGCTG...............................................................................................................................................................................................................................2111.00100100
...............................................................................................TGCGCTGGTCAGAAAACAAA..................................................................................................................................................................................................................2011.00100010
....................................................................................TGGAAGTGAAGTGCGCTGGTCAG..........................................................................................................................................................................................................................2311.00100100
.................................................................................................................................GA--CA--------G-AGCGAAAAAACAA.......................................................................................................................................................................1811.00100010
..........................................................................AGTTGTTCTTTGGAAGTGAAGTGC...................................................................................................................................................................................................................................2411.00100001
...........................................................................................GAAGTGCGCTGGTCAGAAAACAAA..................................................................................................................................................................................................................2411.00100010
.....................................................................ATTTTAGTTGTTCTTTGGAAG...........................................................................................................................................................................................................................................2111.00100010
..............................................................................................................................................................................................................................TACAACA------AAAGAG-ACA-------AAAGC....................................................................2111.00100010
.......................................................................................................................................................................................................GTGAAAGAAAAAAAAACAAATT........................................................................................................2211.00100010
...................................................................................TTGGAAGTGAAGTGCGCTGGTCA...........................................................................................................................................................................................................................2311.00100010
.....................................................................................................................................CA--------G-AGCGAAAAAACAAAATAAAAT...............................................................................................................................................................2411.00110000
.............................................................................................AGTGCGCTGGTCAGAAAA......................................................................................................................................................................................................................1811.00100010
................................................................................................................................AGA--CA--------G-AGCGAAAAAACA........................................................................................................................................................................1811.00100010
..........................................................................AGTTGTTCTTTGGAAGTGAAGTG....................................................................................................................................................................................................................................2311.00100010
..................................................................................................................AA----------CGAGA--CA--------G-AGCGAAAAAA..........................................................................................................................................................................2011.00100100
..............................................................................................................ACAAAA----------CGAGA--CA--------G-AGCG................................................................................................................................................................................1811.00100010
..................................................................................................................AA----------CGAGA--CA--------G-AGCGAAAA............................................................................................................................................................................1811.00100010
............................................................................................................AAACAAAA----------CGAGA--CA--------G-AGCGA...............................................................................................................................................................................2111.00100100
..................................................................................................GCTGGTCAGAAAACAAAA----------.......................................................................................................................................................................................................1811.00100010
.....................................................................................................GGTCAGAAAACAAAA----------CGAGA--CA--------G-A...................................................................................................................................................................................2411.00101000
.....................................................................................GGAAGTGAAGTGCGCTGGTC............................................................................................................................................................................................................................2011.00100100
................................................................................................GCGCTGGTCAGAAAACAAAA----------CGAGA--CA--------......................................................................................................................................................................................2711.00100100
..................................................................................TTTGGAAGTGAAGTGCGCTGGTCAGA.........................................................................................................................................................................................................................2611.00100100
..................................................................................TTTGGAAGTGAAGTGCGCTGGTCAGAAA.......................................................................................................................................................................................................................2811.00100100
....................................................................................TGGAAGTGAAGTGCGCTGGT.............................................................................................................................................................................................................................2011.00100100
............................................................................................................................................................................................................................TTTACAACA------AAAGAG-ACA-------AAAGC....................................................................2311.00100010
...............................................................................TTCTTTGGAAGTGAAGTG....................................................................................................................................................................................................................................1811.00100010
droVir3
CTGCTGACGCCGACGTCGTCGCTGCTGCCGGTTTATTTTGCTTTTTAGAGCGTGCATCGTCTCAGGAAAATTTCAGTTGTTCTTTGGAA-----TTGCGCTCGACAAGTCCAG-------TG---CTGGAAA--GAGCTACTACAATTC-AAA----------------------AAGAAAAAAAAA-AAGAAAAATCTGTGAAAC--------------TCTGTGTAA------AGACAG-TGA-------A----AAA--GTGTTTGAAGAA-C----C-TAAACAAGCATAGTTAATAAA-----GTTAATAACATTTTTAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..........................................................................AGTTGTTCTTTGGAA-----TTG....................................................................................................................................................................................................................................18119.0019000000102000000001000100112400030100001000000000000000000000100
..........................................................................AGTTGTTCTTTGGAA-----TTGCG..................................................................................................................................................................................................................................20113.0013000002201000000000001000110011020000000000000000000000000000100
..........................................................................AGTTGTTCTTTGGAA-----TTGC...................................................................................................................................................................................................................................19111.0011010101100020000000000000020000100000000100000000000000000000100
...............................................................................................................AG-------TG---CTGGAAA--GAGCTACT.......................................................................................................................................................................................1917.007101003002000000000000000000000000000000000000000000000000000000
..........................................................................................................AGTCCAG-------TG---CTGGAAA--GAGCT..........................................................................................................................................................................................2116.006000000101000000000000000000000000000000000000000000000000000130
............................................................................................................TCCAG-------TG---CTGGAAA--GAGCT..........................................................................................................................................................................................1915.005100100003000000000000000000000000000000000000000000000000000000
..........................................................................................................AGTCCAG-------TG---CTGGAAA--GAGCTA.........................................................................................................................................................................................2215.005101000000000000001000000000000000000000000000000000000000000110
..........................................................................AGTTGTTCTTTGGAA-----TTGCGCT................................................................................................................................................................................................................................2214.004000003000000000000000000001000000000000000000000000000000000000
..............................................................................GTTCTTTGGAA-----TTGCGCTC...............................................................................................................................................................................................................................1913.003001000000000000000000000000000000000000000000000000000000000002
........................................................................................A-----TTGCGCTCGACAAGTCC......................................................................................................................................................................................................................1813.003002100000000000000000000000000000000000000000000000000000000000
..........................................................................................................AGTCCAG-------TG---CTGGAAA--GAG............................................................................................................................................................................................1913.003000000000000000000000000000000000000000000000000000000000000210
.............................................................................................................CCAG-------TG---CTGGAAA--GAGCT..........................................................................................................................................................................................1813.003120000000000000000000000000000000000000000000000000000000000000
.........................................................................................................AAGTCCAG-------TG---CTGGAAA--GAGCT..........................................................................................................................................................................................2213.003000000000000000000000000000000000000000000000000000000000000120
.........................................................................................................AAGTCCAG-------TG---CTGGAAA--GAGCTA.........................................................................................................................................................................................2312.002010000000000000000000000000000000000000000000000000000000000010
.......................................................................................................ACAAGTCCAG-------TG---CTGGAAA--GAGCT..........................................................................................................................................................................................2412.002100000000000000000000000000000000000000000000000000000000000010
..........................................................................................................AGTCCAG-------TG---CTGGAAA--GA.............................................................................................................................................................................................1812.002000000001000000000000000000000000000001000000000000000000000000
...........................................................................................................GTCCAG-------TG---CTGGAAA--GAGC...........................................................................................................................................................................................1912.002000000001000000001000000000000000000000000000000000000000000000
..........................................................................................................AGTCCAG-------TG---CTGGAAA--GAGCTACTACAA...................................................................................................................................................................................2812.002000000000000000002000000000000000000000000000000000000000000000
......................................................................................................GACAAGTCCAG-------TG---CTGGAAA--GAG............................................................................................................................................................................................2312.002000000000000000000000000000000000000000000000000000000000000020
...................................................................................................................................................................................................ATCTGTGAAAC--------------TCTGTGTAA------AGACA.....................................................................................2512.002001000000000001000000000000000000000000000000000000000000000000
.............................................................................................................CCAG-------TG---CTGGAAA--GAGCTACT.......................................................................................................................................................................................2112.002000000000000000001000000000000000000000000000000000000000000010
...............................................................................................................AG-------TG---CTGGAAA--GAGCTACTACAATTC-AA.............................................................................................................................................................................2812.002000000000000000002000000000000000000000000000000000000000000000
..............................................................................GTTCTTTGGAA-----TTGCGCTCGA.............................................................................................................................................................................................................................2112.002000000000000000000000000000000000000000200000000000000000000000
.................................................................................CTTTGGAA-----TTGCGCTCGACA...........................................................................................................................................................................................................................2012.002002000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................AAAC--------------TCTGTGTAA------AGACAG-...................................................................................1912.002000000002000000000000000000000000000000000000000000000000000000
........................................................................................A-----TTGCGCTCGACAAGTCCA.....................................................................................................................................................................................................................1912.002002000000000000000000000000000000000000000000000000000000000000
..........................................................................AGTTGTTCTTTGGAA-----TTGCGC.................................................................................................................................................................................................................................2112.002000000100000000000000001000000000000000000000000000000000000000
.....................................................................................................CGACAAGTCCAG-------TG---CTGGAAA--GAGC...........................................................................................................................................................................................2512.002000100000000000000000000000000000000000000000000000000000000010
..................................................................................TTTGGAA-----TTGCGCTCGAC............................................................................................................................................................................................................................1812.002010000100000000000000000000000000000000000000000000000000000000
...........................................................................................................GTCCAG-------TG---CTGGAAA--GAGCT..........................................................................................................................................................................................2012.002101000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................CTGGAAA--GAGCTACTACAA...................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000001000
.............................................................................................................................................................................................................................................................................AAGAA-C----C-TAAACAAGCATAGT.............................2111.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................GTTCTTTGGAA-----TTGCGCTCGACA...........................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................C-TAAACAAGCATAGTTAATAAA-----GTT..............2511.001000000000000000000000000000000000000000000000000000000000000010
............................................................................................................................................................................................................................................................A----AAA--GTGTTTGAAGAA-C----C-TAAACAAGC..................................2711.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................GACAAGTCCAG-------TG---CTGGAAA--GA.............................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000010
..................................................................................................GCTCGACAAGTCCAG-------TG---CTGGAAA--G..............................................................................................................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................AAC--------------TCTGTGTAA------AGACAG-T..................................................................................1911.001000000000000000000100000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................GTAA------AGACAG-TGA-------A----AAA--GT.............................................................1911.001000000000000000001000000000000000000000000000000000000000000000
......................................................................................GAA-----TTGCGCTCGACAAGTCC......................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................TTCTTTGGAA-----TTGCGCTCGACAAGT........................................................................................................................................................................................................................2511.001000000000000000000000000000000010000000000000000000000000000000
................................................................................................GCGCTCGACAAGTCCAG-------TG---CTGGAAA--G..............................................................................................................................................................................................2711.001000000000000000001000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................GTAA------AGACAG-TGA-------A----AAA--GTGTTT.........................................................2311.001000000000000000001000000000000000000000000000000000000000000000
......................................................................................................GACAAGTCCAG-------TG---CTGGAAA--GAGCT..........................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000010
...................................................................................................................................................................................................................................................................................C----C-TAAACAAGCATAGTTAATAAA-----GTT..............2611.001000000000000000001000000000000000000000000000000000000000000000
.................................................................................CTTTGGAA-----TTGCGCTCGAC............................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................TCCAG-------TG---CTGGAAA--GAGC...........................................................................................................................................................................................1811.001000000001000000000000000000000000000000000000000000000000000000
..............................................................................................TTGCGCTCGACAAGTCCAG-------TG---........................................................................................................................................................................................................2111.001000000000000000100000000000000000000000000000000000000000000000
......................................................................................GAA-----TTGCGCTCGACAAGT........................................................................................................................................................................................................................1811.001000000000000000001000000000000000000000000000000000000000000000
................................................................................TCTTTGGAA-----TTGCGCTCGACAAGTCC......................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................TGAAGAA-C----C-TAAACAAGCATAGTTAAT.........................2711.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................TAA------AGACAG-TGA-------A----AAA--GTGTT..........................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................AAGTCCAG-------TG---CTGGAAA--GAGC...........................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000100
...........................................................................................................................................................................................................................................................................TGAAGAA-C----C-TAAACAAGCATAGTTA...........................2511.001000000000000000001000000000000000000000000000000000000000000000
............................................................................TTGTTCTTTGGAA-----TTGC...................................................................................................................................................................................................................................1711.001000000000000000000000000000000000000000000000000000000001000000
............................................................................................................TCCAG-------TG---CTGGAAA--GAGCTAC........................................................................................................................................................................................2111.001000000000000000000000010000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................TGAAGAA-C----C-TAAACAAGCATAG..............................2211.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................GAAAAATCTGTGAAAC--------------TCT......................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................TGCGCTCGACAAGTCCAG-------TG---CTGGA...................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000001000
.................................................................................................................................................................................................................................GTAA------AGACAG-TGA-------A----AAA--GTG............................................................2011.001000000000000000000000000000000000000000000000000000000000001000
..........................................................................AGTTGTTCTTTGGAA-----TTGCGCTCGA.............................................................................................................................................................................................................................2511.001000000000000000000000100000000000000000000000000000000000000000
................................................................................................................................GAAA--GAGCTACTACAATT.................................................................................................................................................................................1811.001000000000000000000000000000000000000001000000000000000000000000
...........................................................................................................GTCCAG-------TG---CTGGAAA--GAG............................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................TTTGGAA-----TTGCGCTCGACAAGTCC......................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................TTGAAGAA-C----C-TAAACAAGCATAGTT............................2511.001000000000000000000000000000000000000000000000000000000000001000
............................................................................TTGTTCTTTGGAA-----TTGCGCTCGAC............................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000001
..........................................................................................................AGTCCAG-------TG---CTGGAAA--GAGC...........................................................................................................................................................................................2011.001000000001000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................TGAAGAA-C----C-TAAACAAGCATAGT.............................2311.001000000000000000001000000000000000000000000000000000000000000000
...................................................................................TTGGAA-----TTGCGCTCGACAAGTCCAG-------TG---........................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................TGCGCTCGACAAGTCCAG-------TG---........................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................ACAAGTCCAG-------TG---CTGGAAA--GAGC...........................................................................................................................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................C--------------TCTGTGTAA------AGACAG-TGA-------A----AAA--G..............................................................2411.001000000000000000000000010000000000000000000000000000000000000000
.......................................................................................................ACAAGTCCAG-------TG---CTGGAAA--G..............................................................................................................................................................................................2011.001000000000000000000000000000010000000000000000000000000000000000
...................................................................................................................................................................................................ATCTGTGAAAC--------------TCTGTGTAA------AGACAG-TG.................................................................................2811.001000000000000000000000000000000000000000000000000000000000000010
............................................................................................................TCCAG-------TG---CTGGAAA--GAGCTACTACAAT..................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000010
.................................................................................................................................AAA--GAGCTACTACAATTC-AAA----------------------AAG...................................................................................................................................................2411.001000100000000000000000000000000000000000000000000000000000000000
............................................................................TTGTTCTTTGGAA-----TTGCG..................................................................................................................................................................................................................................1811.001000000000000000000000000010000000000000000000000000000000000000
.....................................................................................................CGACAAGTCCAG-------TG---CTGGAG..................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000100000000000
................................................................................TCTTTGGAA-----TTGCGCTCGA.............................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000010
.....................................................................................................CGACAAGTCCAG-------TG---CTGGAAA--GAGCTA.........................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................GTGAAAC--------------TCTGTGTAA------AG........................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................GTCCAG-------TG---CTGGAAA--GAGCTACTA......................................................................................................................................................................................2411.001000000000000000000000010000000000000000000000000000000000000000
...............................................................................................TGCGCTCGACAAGTCCAG-------TG---CTGGAG..................................................................................................................................................................................................2611.001000000000000000000000000000001000000000000000000000000000000000
......................................................................................................GACAAGTCCAG-------TG---CTGGAAA--...............................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................GCGCTCGACAAGTCCAG-------T............................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000001
..............................................................................................................................................................................................................................................CAG-TGA-------A----AAA--GTGTTTGAA......................................................1911.001000000000000000000000000000000000000000000000000000000000000010
........................................................................................A-----TTGCGCTCGACAAGTCCAG-------TG---CTGGA...................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................TGTGTAA------AGACAG-TGA-------A----AAA--G..............................................................2111.001000000000000001000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................AAATCTGTGAAAC--------------TCTGTGTAA------AGACAG-TGT-------.........................................................................3111.001000000000000000000000000000000000000000000000000000000000010000
...................................................................................TTGGAA-----TTGCGCTCGACA...........................................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000001000
.................................................................................................................................................................................................................................GTAA------AGACAG-TGA-------A----AAA--GTGTT..........................................................2211.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................CTCGACAAGTCCAG-------TG---CTGGAG..................................................................................................................................................................................................2211.001000000000000000000000100000000000000000000000000000000000000000
.................................................................................................................................................................................................................................GTAA------AGACAG-TGA-------A----AAA--GTGT...........................................................2111.001000000000000000000000000000000000000000000000000000000000000010
........................................................................................................................................................................................................................................................................GTTTGAAGAA-C----C-TAAACAAGCATAGTTA...........................2811.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................TTGGAA-----TTGCGCTCGACAAGTCCAG-------T............................................................................................................................................................................................................2611.001000000001000000000000000000000000000000000000000000000000000000
........................................................................TCAGTTGTTCTTTGGAA-----TTGCGCT................................................................................................................................................................................................................................2411.001000001000000000000000000000000000000000000000000000000000000000
.....................................................................................................CGACAAGTCCAG-------TG---CTGGAAA--G..............................................................................................................................................................................................2211.001000000000000000001000000000000000000000000000000000000000000000
....................................................................................TGGAA-----TTGCGCTCGACAAGTCCAG-------TG---CT......................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................CGACAAGTCCAG-------TG---CTGGAAA--GAG............................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000010
................................................................................................GCGCTCGACAAGTCCAG-------TG---CTGGA...................................................................................................................................................................................................2411.001000000000000000100000000000000000000000000000000000000000000000
.....................................................................................................CGACAAGTCCAG-------TG---CTGGA...................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................G---CTGGAAA--GAGCTACTACA....................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................AAGTCCAG-------TG---CTGGAAA--GA.............................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................AG-------TG---CTGGAAA--GAGCTACTAC.....................................................................................................................................................................................2111.001000000000000000000000010000000000000000000000000000000000000000
......................................................................................................GACAAGTCCAG-------TG---CTGGAAA--GAGC...........................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000010
.........................................................................................................................................................................................................GAAAC--------------TCTGTGTAA------AGACAG-...................................................................................2011.001000000000000000000100000000000000000000000000000000000000000000
..........................................................................................................AGTCCAG-------TG---CTGGAAA--GAGCTACTACA....................................................................................................................................................................................2711.001000000000000000000100000000000000000000000000000000000000000000
....................................................................................TGGAA-----TTGCGCTCGACAAGTCC......................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................AAAA-AAGAAAAATCTGTGAAAC--------------TCT......................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
................................................................................TCTTTGGAA-----TTGCGCTCGACA...........................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
............................................................................TTGTTCTTTGGAA-----TTGCGCTCGAT............................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000001
...........................................................................GTTGTTCTTTGGAA-----TTGCGC.................................................................................................................................................................................................................................2011.001000000000000000000000010000000000000000000000000000000000000000
..................................................................................................GCTCGACAAGTCCAG-------TG---CTGGAGC--T..............................................................................................................................................................................................2511.001000000000000000000000000000000010000000000000000000000000000000
........................................................................................................................TG---CTGGAAA--GAGCTACTACA....................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000100
................................................................................................................G-------TG---CTGGAAA--GAGCTACTACAATT.................................................................................................................................................................................2411.001000000000000000001000000000000000000000000000000000000000000000
.....................................................................................................CGACAAGTCCAG-------TG---CTGGAAA--...............................................................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
......................................................................................................................................................................................AAAAA-AAGAAAAATCTGTGA..........................................................................................................................2011.001000000000000000010000000000000000000000000000000000000000000000
..................................................................................................GCTCGACAAGTCCAG-------TG---CTGGAG..................................................................................................................................................................................................2311.001000000000000000000000000000001000000000000000000000000000000000
..........................................................................................................AGTCCAG-------TG---CTGGAAA--GAGCTACTA......................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000010
.....................................................................................GGAA-----TTGCGCTCGACAAGTCCAG-------TG---........................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................CTTTGGAA-----TTGCGCTCGACAAGT........................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................GTCCAG-------TG---CTGGAAA--GAGCTACTACA....................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................AAAAAA-AAGAAAAATCTG.............................................................................................................................1820.501010000000000000000000000000000000000000000000000000000000000000
droGri2
CG----------------------CTGCCGGTTTATTTTGCTTTTTAGAGCGTACATCGTGTGGAAAAAATGTTAGTTGTTCTTTGGAA-----GTGCGCTCGAGAAGTC---CAA----C---GTT--GGAGCGAGTTGCTC---TGC------------------------------AAATAGAA-AAGAAAAATCTG--------------------------------------------A-------G----AAA--GTGTTAAAAAGAAC----T-TAAGCAAACAAAGTGAATAA------------GCTTACAACATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.......................................................................................................AGAAGTC---CAA----C---GTT--GGAGCGAGTTG.........................................................................................................................................................................................2514.00413
......................................................................................GAA-----GTGCGCTCGAGAAGTC---CAA----C---.........................................................................................................................................................................................................2311.00110
............................................................................................................................................................................................................................................................................AAAAGAAC----T-TAAGCAAACAAAGTG............................2411.00110
....................................................................................................................................................................................AATAGAA-AAGAAAAATCTG--------------------------------------------A-------G----A...................................................................2211.00110
............................................................................TTGTTCTTTGGAA-----GTGCGCTCGAGA...........................................................................................................................................................................................................................2511.00110
......................................................................................GAA-----GTGCGCTCGAGAAGTC---CA..................................................................................................................................................................................................................2111.00101
..........................................................................................................AGTC---CAA----C---GTT--GGAGCGAG............................................................................................................................................................................................1911.00101
............................................................................................................................................................................................................................................................................................AGCAAACAAAGTGAATAA------------GCT........2111.00101

Generated: 05/15/2015 at 03:03 PM