ID:

dsi_13638

 Coordinate:

3l:11958309-11958578 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-20.6 -20.5 -20.5

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+
mature
  1. dsi_13638  3l:11958563-11958578 -
  2. node_15275:118-133 -
  3. node_55158:342-357 +
star

Sense Strand Reads

TAAAAACACTCACAACTGAGCCACCGAAAATTGTTTATATTCCTGGAATTTTGAATTGTTTAGGGAAAGCAATTAAACCCATCAAATACGCAAAATAAACATGTGAAATATGAATATGAAATATGAATATTATAATGTACAGCATATATTAAATATAAAACTAAAATTTAAAATTTTAAATATTCCAACATTTAAAACAGCACAGTTAAAACACCTATAACTACAAAGTAAACAAGTGAAGACAAACCAATATCTACTGTATATTATTTTAACAACTGTATAATCCAACACTATTTTAACCGAAAATCTGTAAAAAAAAGTCTATAAAACTATATTTTCGTGAAATTAACGCGTGTAATCGAAAAGCGTT
**************************************************...((((((((.....)))))))).........................(((((...(((....)))...)))))..((..(((((((((((......((((((...........))))))..((((((((........))))))))..............(((.....(((....)))......)))..................)))))))))))..)).....................****************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M023
head
 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 O001
Testis
..................................................TTGAATTGTTTAGGGA................................................................................................................................................................................................................................................................................................................ 16 0 3 1.33 4 1 3 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................TAAAAACTGTATAATCCAACACTATT........................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................AAAGTCTATAAAACTATATTTTCGTGA........................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................TTAACAACTGTATAATCCAACACT.............................................................................. 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................ATCTACTGTATATTATT...................................................................................................... 17 0 1 1.00 1 0 0 0 0 1 0 0 0 0
.....................................................................................................................................................................................................................................................................................................TTTTAACCGAAAATCTGTAAAAAAA.................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................CTATATTTTCGTGAAATTA...................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................GTCTATAAAACTATATTTTCGTGAAATT....................... 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................................................................TTTAAAAACTGTATAATCCAACACTA............................................................................. 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................TGAATTGTTTAGGGA................................................................................................................................................................................................................................................................................................................ 15 0 3 1.00 3 0 3 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................................TCGTGAAATTAACGCGTGTAATCGAAA...... 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0
.....................................................................................................................................................................................................TTGCACAGTTAAAACACCTA......................................................................................................................................................... 20 2 1 1.00 1 0 0 0 1 0 0 0 0 0
................................GTTTATATTCCTGGAATTTTGAAT.......................................................................................................................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0
...................................................TGAATTGTTTAGGGAA............................................................................................................................................................................................................................................................................................................... 16 0 3 0.67 2 0 2 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................AAGTCTGTAAAAAAAA................................................... 16 1 20 0.65 13 0 0 0 0 0 0 13 0 0
............................................................................................ACAAACACATGTGAAATATGAAT............................................................................................................................................................................................................................................................... 23 3 2 0.50 1 1 0 0 0 0 0 0 0 0
.....................................TATTTCTGGAATTTTGGTTTGTT...................................................................................................................................................................................................................................................................................................................... 23 3 6 0.17 1 0 0 0 0 0 0 0 1 0
...................................................................................................................................................................................................................................................................................................................................................GTGAAATTAACCCGTGA.............. 17 2 10 0.10 1 0 0 0 0 0 0 0 1 0
......................................................................................................................................................................................................................................................................................................TTAAACAGAAAATCTGTAA......................................................... 19 2 11 0.09 1 0 0 0 0 0 0 0 0 1
.................GAGCCACCGTAACCTGTT............................................................................................................................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................................GTGAAATTAACGCTT................ 15 1 20 0.05 1 0 1 0 0 0 0 0 0 0
...................................................TGAATTGTTTAGAGA................................................................................................................................................................................................................................................................................................................ 15 1 20 0.05 1 0 0 0 0 0 0 0 1 0
.....................................................................................ATTCGCAAAATAAACATGTCAT....................................................................................................................................................................................................................................................................... 22 3 20 0.05 1 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

ATTTTTGTGAGTGTTGACTCGGTGGCTTTTAACAAATATAAGGACCTTAAAACTTAACAAATCCCTTTCGTTAATTTGGGTAGTTTATGCGTTTTATTTGTACACTTTATACTTATACTTTATACTTATAATATTACATGTCGTATATAATTTATATTTTGATTTTAAATTTTAAAATTTATAAGGTTGTAAATTTTGTCGTGTCAATTTTGTGGATATTGATGTTTCATTTGTTCACTTCTGTTTGGTTATAGATGACATATAATAAAATTGTTGACATATTAGGTTGTGATAAAATTGGCTTTTAGACATTTTTTTTCAGATATTTTGATATAAAAGCACTTTAATTGCGCACATTAGCTTTTCGCAA
******************************************************************************...((((((((.....)))))))).........................(((((...(((....)))...)))))..((..(((((((((((......((((((...........))))))..((((((((........))))))))..............(((.....(((....)))......)))..................)))))))))))..)).....................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
.........................CTTTAAAGAAATATAAGGAC..................................................................................................................................................................................................................................................................................................................................... 20 2 5 9.60 48 36 11 0 0 0 0 0 1 0
.........................CTTTAAAGAAATATAAGGACG.................................................................................................................................................................................................................................................................................................................................... 21 3 11 1.36 15 12 3 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................AGATGACATATAATAAAATTTTTGA............................................................................................. 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................AAATTTATAAGGTTGT.................................................................................................................................................................................... 16 0 1 1.00 1 0 0 1 0 0 0 0 0 0
......................TAGCTTTAAAGAAATATAAGGAC..................................................................................................................................................................................................................................................................................................................................... 23 3 2 0.50 1 0 1 0 0 0 0 0 0 0
........................GCTTTAAAGAAATATAAGGA...................................................................................................................................................................................................................................................................................................................................... 20 2 4 0.50 2 0 2 0 0 0 0 0 0 0
..............................................................................................................ACTGATACTTTATGCTT................................................................................................................................................................................................................................................... 17 2 20 0.45 9 0 0 4 0 0 5 0 0 0
....................................................................................................TACACTCTACACTTATACATT......................................................................................................................................................................................................................................................... 21 3 4 0.25 1 0 0 0 0 1 0 0 0 0
......................TAGCTTTAAAGAAATATAAGGA...................................................................................................................................................................................................................................................................................................................................... 22 3 5 0.20 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................ATAAAATTGGCTTTT................................................................ 15 0 5 0.20 1 0 0 0 1 0 0 0 0 0
..........................TTTAAAGAAATATAAGGAC..................................................................................................................................................................................................................................................................................................................................... 19 2 11 0.18 2 1 1 0 0 0 0 0 0 0
ATTCTTGTGATTGTGGACT............................................................................................................................................................................................................................................................................................................................................................... 19 3 20 0.15 3 0 0 0 0 0 0 3 0 0
.....................................................................................................................................................................................................................................................................................................AAAATTGGCTCTTAGACT........................................................... 18 2 8 0.13 1 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................................TTTTCTGGATTTTGATGTT................................................................................................................................................ 19 2 16 0.13 2 0 0 0 0 2 0 0 0 0
...........................TTAAAGAAATATAAGGAC..................................................................................................................................................................................................................................................................................................................................... 18 2 20 0.10 2 2 0 0 0 0 0 0 0 0
..............................................................................................................ACTGATACTTTATGCTTA.................................................................................................................................................................................................................................................. 18 2 11 0.09 1 0 0 0 0 0 0 0 0 1
............................................................................................................AGACTTATACTTTATGCTT................................................................................................................................................................................................................................................... 19 2 11 0.09 1 0 0 0 0 0 1 0 0 0
...............................................................................................................................ATAATATTAGATGTC.................................................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 1 0 0 0 0 0
..................................................................TTCGTTAATGTGGGT................................................................................................................................................................................................................................................................................................. 15 1 20 0.05 1 0 0 0 0 0 0 1 0 0
.................................................................................................................................................................................................................................................................................CTGAGATATTAGGTTG................................................................................. 16 2 20 0.05 1 0 0 0 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:11958259-11958628 - dsi_13638 TAAAAACAC-----------------TCAC-------------A------------------------------------------------------------------------------------------------------------ACTGA----GCCACCGAAAATTGTTTAT---ATTCCTGGAATTTTGA------ATTGTTTAGGGAAAGCA-----------ATTAAACCCATCAAATACGCAAAATAA----------------ACATGTGAAATATGAATATGAAATATGAA---------TATTATAATGTA--------------------CAGCA-----------------------------------------------------------------------------TATA--------------------------------------------------TTA------AATATAAAACT--------------------------------------------------------------------------AAAAT-----------------T-------TA-------AAATTTTAAATATTCCAACATTTAAAACAGCACAGTTAAAAC------------AC--CTATAACTACAAAGTAAA--------------------------C---AAGTGAAGACAAACCAATA--TCTACTGT-ATATTATT-TTAACAACT----------GTATA-ATCCAACACTATTT----------------TAACCGAAAATCTGTAAAAAA-AAGTCTATAAAACTA----------------TATTTT-CGTGAA-ATTA-----ACGCGTGTAATCGAAAAGCGTT
droSec2 scaffold_0:4442705-4443074 - TATAAACAT-----------------TCAC-------------A------------------------------------------------------------------------------------------------------------ACTGA----TCCACCG-AAATTGCTTAT---ATTCCAGGAATTTTGA------ATTGTTTAGGAAAAGCA-----------ATTAAACCCATAAAATACGTAAAATAA----------------ACATGTGATATATGAATATGAAATATGAA---------TATTATAATGTA--------------------CAGCA-----------------------------------------------------------------------------AATA--------------------------------------------------TTA------AATATAAAACT--------------------------------------------------------------------------AAAAT-----------------T-------GA-------AAATATTAAATATTCCAACATTTCAAACAGCACAGTTAAAAC------------AC--CTATAACTACAAAGTAAA--------------------------C---AAGTGAAGACAAACCAATA--TCTACTGT-ATATTATT-TTAAAAACT----------GTATA-ATCCAACACTATTT----------------TAACCGAAAATCTGTAAAAAAAAAGTCTATAAAACTA----------------TATTTT-CGTGAA-ATTA-----ACGCGTGTAATCGAAAAGCGTT
dm3 chr3L:12257833-12258221 - TATAAACAT-----------------CCAC-------------A------------------------------------------------------------------------------------------------------------ACTGA----GCCACCAAAAATTGTTTAT---TTTCCTGGAATTTTTA------CCTGTTTAGGGAAAGCA--------------------ATAAAATGCGC-AAGTAA----------------ACATGTAATATATAAATATGAAATATGTA---------TATTTTAATGTA--------------------CAGCAAATATCCGCAA----------------------------------------------------------------------------------------------------------AATTGACTTATTAATTA------AATATAAAACT--------------------------------------------------------------------------AGCAT-----------------T-------GA-------AAATATTAAATATTCCAACATTGAAAACAGCACAGTTATAAC------------AC---CTTAACTACAAAGTAAAC-----------------TCGACAACC---AAATGAAGACAAACCAATA--TCTACTGT-ATATTATT-TTAAAAACT----------GTATA-ATCCACAACTATTT----------------TAACCGAAAATCTGTAAAAAG-AAGTCCATTAAACTA----------------TATTTT-CGTGAA-ATTA-----ACGCGTGTAATCGAAAAGCATT
droEre2 scaffold_4784:12252129-12252528 - TATAAAAAT-----------------GCAT-------------A------------------------------------------------------------------------------------------------------------CCTGA----GCAC-CGTAAATTGATTAT---CAT--TCGAATGTTTA------GTTGT--A-GGAAACCAAGTATCCGCCTATTTTACCCATAAAATACGG-AAATAA----------------ACATGTGAAT----------------------------TATTATAATGTATAAT-----------TTTGATAGCAAAAATACCCAT----------------------------------------------------------------------------------------------------------CATAAATTTTTTAATTT------AATATAGAACT--------------------------------------------------------------------------AAAATGT---------------T-------T--------AAATATTTTATTTTCCAACATTTAAAACAGCACAGTGAAAAC----------------CTATAACTACAAAATAAAC-----------------ACGACAACC---AAGCTAAAACAAACCAATA--AGTAGTGC-ATATTATT-TTAAAAACA----------CTATAAATCTACCATTATTT----------------TAACCGAAAATCTGTACAAAGAAAGCCTATGAAACTA----------------TATTTT-CGTGAA-ATTAACTAAGCGCGTGTAATCGAAAAGCGTA
droYak3 3L:12308989-12309377 - TATAAAAAT-----------------TCAT-------------A------------------------------------------------------------------------------------------------------------CCTGA----GCGGC-GTAAATGTATTAT---ATTTTTAGAATGTTTA------ATTGT--A-GGAAAGCACGTATCCGCCTATTTTACCCATTAAATACGA-AACGAT----------------ACAAGTGAATTATTAATT---------------------------------------------CATTTGA--CCCAAAATCCGCAT----------------------------------------------------------------------------------------------------------AATAAACTGATTATTTT------AATATAAAACA--------------------------------------------------------------------------AATAT-----------------T-------TA-------TATTATTTAATTTTTGAACATTTAAAACAGCACAGTTGAAAC------------CC---TATAACTACCAAATAAAC-----------------ACGACAACC---AAGTGAAGACAAACCAACA--ATTAGTGC-ATATTCTT-TTAA-AACT----------CTATAAATCTACCGTTATTT----------------TAACCGAAAATCTGTAAAA----AGTCTATAAAACTA----------------TATTTT-CGTGAA-ACTAACTCAACGCGTGTAATCGAAAAGCGTA
droEug1 scf7180000409466:4347871-4348206 - CAGAAACAA-----------------------------------------------------------------------AAGATAT--------GTAGGATG------TTGGTTCTTTCAAGATTTTAGTTAAACAAAT-------------------------------------------------------------------------------------------------------------ATCC---------------------------------------------------------------------------------------------------------GTGAGGTAGTTTCATAAA-TCAAACAAAAAGCATATATCCGTATAATAAACCTAAAAACTTGTTAAAACAAACT--------------------------------------------------CCA------AATCCAGAACT--------------------------------------------------------------------------AATTG-T---------------T-------ATAAAAATTAAATAT-----------------------------TTGATAC------------TCCATTCTAGCTACAAAACAAAC-----------------TCAACAAAC---AAGTGAAAACAAACCAATG--ATCAGTGC-TTGCTATT-TTAAAAAAC---------CCTGTTAATCTATTGCTCTTT----------------TAACTAAAAATCTTAAAAA----A----ATATAACTT----------------TAGTTTCCGTGAA-ATTA-----ACGCGTGTAATCGAAAAG----
droBia1 scf7180000302428:4518229-4518618 - TTAAAAACA------------------------------------------------------------TATGAAAATAAACTTAAATTTTTTTTATAGTATTTAATTAT--------------------TA-----GGGATTTTATAAGCCCCAAAGAATACCC-CTTAAAATGATAAT---TTT--ACGAACATTGA------G---------------------------------------------CA-AATAAAAAATCTTAAAAAACCAAC---------------------------TTCAATTGATTTTA-------------------------------------------------------------------------------------------------------------------------------TAGTATTTAAATCACTTTTAC--------------A---ATC-------------------------CTAAAAATAA-----------------------------CC----------------------CAT-T-------------------------------------TTTTACACTTTACAACACTTAAAACCGCACAGTTAAACC------------CCTACTATAGCTCCAGAACAAAC------------------CTACAACCCAGCAGTGAAAACTAACCCATA--GACAGTGC-TTGCTATT-TTAAAAACT----------CCACAAATCTATCGTTATTT----------------TAACCAAAACCCTGTAAGC----AGTCAATAAAACTA-----------------------CGTGAA-ATT------ACGCGTG-AATCGAAAATCGTA
droTak1 scf7180000415254:329724-330093 + TACAGAAAA-----------------GACT-------------GTAAAATAATCGTAGTAAA-----------------------------------------------T--------------------TCAGTCAAGT-------------------------------------------------------------------------------------------------------------GTTC---------------------------------------------------------------------------------------------------------TAGAAGTGCATCTAAAAAATAAAACCAAG-----------------------------------------AA--------------------------------------------------AATAA------AATATAAAACTATTTT------AGGGAAA----------------------------------CTTAAAAATTTAATCAAAGTTTATAAAGTTTCAAAATCTCCCCA-GATTTGTA--------CTAAATTTTATTTTAAAACAATTAAAACAGCACAGTTTTAAT------------CCAAATACAGCAATAACATTAAC-----------------TCAACAAAC---AAGTTAAAATTACCCAATG--ATCAGTGC-ATTCTATT-TTAAATACT----------CTTAAAACCTATTGTTCTTT----------------TAACCGTAAATCTGTAACAAA-AAAAATAATAC-CCA----------------AATTTCCCGTGAA-ATTA-----ACGCGTGTAATCGAAAAACGTA
droEle1 scf7180000491255:609190-609598 - TAAACATTTCAGTGCACTTTTTACACTTGTACCTGCTGCCCCTGAAAAATATTC------------------GCAAAGAAACCT-----------------------------------------------------------------GCAACAAA----ACCACAA-AAACGCTGATATTATTT--ACAAAAATTGAAAATCCAATAT--T-CGTATATTTTT--------------------------------------------------------------------------TTTGACTCCGCGAACTCTTA-------------------------------------------------------------------------------------------------------------------------------TAGTATTTTATTAAGTTTTAATTATAATTTTTCCTACTTCTCTGAAA------AATGGTATA--------------------------------------------------------------------TAAAT-----------------T-------T--------ATACATTTTATTTTATAACAATTAAAACAGCACAGTCAAAAT------------CCCAATATAACTATAAAATAAAC-----------------ACCACAAAC---AAGTGAAA-----CCATAG--ATCAATGA-ATGCTATC-TTAAAAACT----------ATTAAAATCTATAGTTCTTT----------------TAACCAAAAATC---------------AATTAAACTA----------------TACTTTCCGTGAA-ATTT-----ACGCGTGTAATCGAAAAAAGTA
droRho1 scf7180000780165:44617-45023 - AAAAAACAT-----------------GTAA-------------A------------------------------------------------------------------------------------------------------------ACCAA----ACCACTC-AAACTGGGAATTACTTT--ATAAAAATTTAAAATCCGTTAT--C-CAAACCTTTGTATCTGCCTAC----------AACTACAA-AATGAAACACGCTAA--AATAAAC---------------------------TACAAGAGTTTCTC-------------------------------------------------------------------------------------------------------------------------------TAGTATTTAATCAAATTTCAATTTACATTTTTCGTACTCCTCTGAAA------AAGACTTTATTGAA-----------------------------------------CTTTACAATTTAAT--------------------------------------C--------AAACATTTTATTTTAAACCAATTTAAACAGCACAGTTGAAAT------------CGTACTATAGCTATTAAATAAAC-----------------ACCACCATC---AAGTGAAAGCAAACCAATG--TTCAATGAAATGCTATT-TTAAAAACT----------ATGTAAATCTATCGTTCTTT----------------TAATCGAAAATCT---------------ATTAAACTA----------------TATTTTCCGTGAA-ATTA-----ACGCGTGTAATCGAAAAACGTA
droFic1 scf7180000453839:801403-801846 + TTAACATAT-----------------TCAC-------------CCTAA---AAACAAACAACTAAAATATGTGAAAACAAAAGGAAT--------TTAC------------AGTTCTACTACGTTTTA------------------------CGTGT----GCA---GTTAATTTAT-------------------------------------GATATCTATGTATCTA----CTATACT-ATTAAAAAAGA-A-----------TAAAAAAAAAAC----CAAT----------------------------TA--ACAACCTTTGGTTTTTTTGTTACATTTA--CCCATA-----------------------------------------------------------------------------------------------------------------------------------ATC-------------------------AGGAAAATGCAAAATTTTTGAGCTGCTGCCCTTATAACACA----------------------AGT-T-----------------T-------T--------CTAAACTCTATATTGAAAGAATTAAATCAGCACAGTTTGAATTTTATTTGGCCATCTAACACAGCTATAAAATAAAC-----------------ACATCAAAC---AAGTAAAATA---------------TAAT-ATGCTCTT-TTATGAACTACGT------GTGTAAACCAATCGTTCTTT----------------TAACCGAAAACCTGTAAAG----AATATATAAAACTA----------------TATTTTCCGTGAAAATTA-----ACGCGTGTAATCGAAAAACGTA
droKik1 scf7180000302391:1664109-1664459 + TTAAAAAAC-----------------TCAC-------------ATAAAGTAAACCAAACAAA-----------------------------------------------T--------------------TT-----GAA-------------------------------------------------------------------------------------------------------------ATTT---------------------------------------------------------------------------------------------------------GAGAAGTACATAAAAA-------------------TATATGAA-----TATTTAAATACTCTTTGCAATAAATATAATTTATAAAAAATTGTATTTAATAAA--------------GTGATCA----------------------------------------------------------------------------------------------------------------------AATTCCT---------TGCCA-------TTTCAGC----------------------------------------------TTTGAAATACCCAAATCCAAACTGTTTTTATATTAATG---AAGTGAA-CCAAACCAATATAATCCGTGA-AACTTATTCTTATAAACTACAAAAAACC-------CGGGTCGTTCTTTTATAAACCAAAAAAATTAACTTAAAATCTACAAAGAAAAAATCTATAAAAATATCTAAAAACAAACCTATATT-----------TTA-----ATGCGTGTAATTGACAAACCTG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TAAAAACAC-----------------TCAC-------------A------------------------------------------------------------------------------------------------------------ACTGA----GCCACCGAAAATTGTTTAT---ATTCCTGGAATTTTGA------ATTGTTTAGGGAAAGCA-----------ATTAAACCCATCAAATACGCAAAATAA----------------ACATGTGAAATATGAATATGAAATATGAA---------TATTATAATGTA--------------------CAGCA-----------------------------------------------------------------------------TATA--------------------------------------------------TTA------AATATAAAACT--------------------------------------------------------------------------AAAAT-----------------T-------TA-------AAATTTTAAATATTCCAACATTTAAAACAGCACAGTTAAAAC------------AC--CTATAACTACAAAGTAAA--------------------------C---AAGTGAAGACAAACCAATA--TCTACTGT-ATATTATT-TTAACAACT----------GTATA-ATCCAACACTATTT----------------TAACCGAAAATCTGTAAAAAA-AAGTCTATAAAACTA----------------TATTTT-CGTGAA-ATTA-----ACGCGTGTAATCGAAAAGCGTTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...................................................................................................................................................................................................TTGA------ATTGTTTAGGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1631.33400000000013000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-AAGTCTATAAAACTA----------------TATTTT-CGTGA.................................2711.00100000000010000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACAACT----------GTATA-ATCCAACACT......................................................................................................................2411.00110000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--TCTACTGT-ATATTATT-.........................................................................................................................................................1711.00100000001000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT----------------TAACCGAAAATCTGTAAAAAA-A...........................................................................2511.00100000000010000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTA----------------TATTTT-CGTGAA-ATTA-----......................1911.00110000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTATAAAACTA----------------TATTTT-CGTGAA-ATT............................2811.00100010000000000000
....................................................................................................................................................................................................TGA------ATTGTTTAGGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1531.00300000000003000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-CGTGAA-ATTA-----ACGCGTGTAATCGAAA......2711.00100000001000000000
..............................................................................................................................................................................GTTTAT---ATTCCTGGAATTTTGA------AT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000000000
....................................................................................................................................................................................................TGA------ATTGTTTAGGGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1630.67200000000002000000
droSec2
TATAAACAT-----------------TCAC-------------A------------------------------------------------------------------------------------------------------------ACTGA----TCCACCG-AAATTGCTTAT---ATTCCAGGAATTTTGA------ATTGTTTAGGAAAAGCA-----------ATTAAACCCATAAAATACGTAAAATAA----------------ACATGTGATATATGAATATGAAATATGAA---------TATTATAATGTA--------------------CAGCA-----------------------------------------------------------------------------AATA--------------------------------------------------TTA------AATATAAAACT--------------------------------------------------------------------------AAAAT-----------------T-------GA-------AAATATTAAATATTCCAACATTTCAAACAGCACAGTTAAAAC------------AC--CTATAACTACAAAGTAAA--------------------------C---AAGTGAAGACAAACCAATA--TCTACTGT-ATATTATT-TTAAAAACT----------GTATA-ATCCAACACTATTT----------------TAACCGAAAATCTGTAAAAAAAAAGTCTATAAAACTA----------------TATTTT-CGTGAA-ATTA-----ACGCGTGTAATCGAAAAGCGTTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
TATAAACAT-----------------CCAC-------------A------------------------------------------------------------------------------------------------------------ACTGA----GCCACCAAAAATTGTTTAT---TTTCCTGGAATTTTTA------CCTGTTTAGGGAAAGCA--------------------ATAAAATGCGC-AAGTAA----------------ACATGTAATATATAAATATGAAATATGTA---------TATTTTAATGTA--------------------CAGCAAATATCCGCAA----------------------------------------------------------------------------------------------------------AATTGACTTATTAATTA------AATATAAAACT--------------------------------------------------------------------------AGCAT-----------------T-------GA-------AAATATTAAATATTCCAACATTGAAAACAGCACAGTTATAAC------------AC---CTTAACTACAAAGTAAAC-----------------TCGACAACC---AAATGAAGACAAACCAATA--TCTACTGT-ATATTATT-TTAAAAACT----------GTATA-ATCCACAACTATTT----------------TAACCGAAAATCTGTAAAAAG-AAGTCCATTAAACTA----------------TATTTT-CGTGAA-ATTA-----ACGCGTGTAATCGAAAAGCATTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGAAAACAGCACAGTTATAAC------------AC---CT.............................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATT-TTAAAAACT----------GTATA-ATCC............................................................................................................................2312.0020000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCACAACTATTT----------------TAACCGAAAATC......................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------------TAACCGAAAATCTGTAAAAAG-AAG.........................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTAATCGAAAAGCATT1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGACAAACCAATA--TCTA.......................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-CGTGAA-ATTA-----ACGCGTGTAATCGAA.......2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACTTATTAATTA------AATATAAAACT--------------------------------------------------------------------------AGCAT-----------------...........................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGAAAACAGCACAGTTATAAC------------AC---C..............................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT----------------TAACCGAAAATCTGTAAAAAG-AAGT........................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGTAATCGAAAAGCA..1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
........................................................................................................................................................................................................................................................TGCGC-AAGTAA----------------ACATGTAATATATAAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACCGAAAATCTGTAAAAAG-AAGTC.......................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA----------------TATTTT-CGTGAA-ATTA-----ACG...................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
....................................................................................................................................................................................................................AGGGAAAGCA--------------------ATAAAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAA-ATTA-----ACGCGTGTAATCG.........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGACTTATTAATTA------AATATAAAAC............................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................TTTTTA------CCTGTTTAGGGAAAGCA--------------------ATAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATT-TTAAAAACT----------GTATA-ATCCACAAC.......................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACTATTT----------------TAACCGAAAATCTGTAAAAA..............................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTAATTA------AATATAAAACT--------------------------------------------------------------------------AGCA.............................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATCTGTAAAAAG-AAGTC.......................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------------TAACCGAAAATCTGTAAAAAG-AAGTC.......................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAAAGTAAAC-----------------TCGACAACC---AAATGA..........................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAC------------AC---CTTAACTACAAAGT.................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC-----------------TCGACAACC---AAATGC..........................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAACATTGAAAACAGCACAGTTATAAC------------....................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCGTGTAATCGAAAAGC...1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCCAACATTGAAAACAGCACAGT......................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
........T-----------------CCAC-------------A------------------------------------------------------------------------------------------------------------ACTGA----GCCACCAAAAATTGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................TCCTGGAATTTTTA------CCTGTTTAGGGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-----ACGCGTGTAATCGAAAAGC...2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...................................................................................................................................................................CACCAAAAATTGTTTAT---TTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................ATGTAATATATAAATATGAAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................TTTA------CCTGTTTAGGGAAAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-TTAAAAACT----------GTATA-ATCCACAACT......................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGTAAAAAG-AAGTCT......................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TATAAAAAT-----------------GCAT-------------A------------------------------------------------------------------------------------------------------------CCTGA----GCAC-CGTAAATTGATTAT---CAT--TCGAATGTTTA------GTTGT--A-GGAAACCAAGTATCCGCCTATTTTACCCATAAAATACGG-AAATAA----------------ACATGTGAAT----------------------------TATTATAATGTATAAT-----------TTTGATAGCAAAAATACCCAT----------------------------------------------------------------------------------------------------------CATAAATTTTTTAATTT------AATATAGAACT--------------------------------------------------------------------------AAAATGT---------------T-------T--------AAATATTTTATTTTCCAACATTTAAAACAGCACAGTGAAAAC----------------CTATAACTACAAAATAAAC-----------------ACGACAACC---AAGCTAAAACAAACCAATA--AGTAGTGC-ATATTATT-TTAAAAACA----------CTATAAATCTACCATTATTT----------------TAACCGAAAATCTGTACAAAGAAAGCCTATGAAACTA----------------TATTTT-CGTGAA-ATTAACTAAGCGCGTGTAATCGAAAAGCGTASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA----------------TATTTT-CGTGAA-ATTAACTAAG.....................2411.0010000100
.......................................................................................................................................................................................................................................................ATACGG-AAATAA----------------ACATGTGAAT----------------------------T......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT------AATATAGAACT--------------------------------------------------------------------------AAAATGT---------------T-------...................................................................................................................................................................................................................................................................................................................2111.0011000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAACCAATA--AGTAGTGC-A.................................................................................................................................................................2011.0011000000
droYak3
TATAAAAAT-----------------TCAT-------------A------------------------------------------------------------------------------------------------------------CCTGA----GCGGC-GTAAATGTATTAT---ATTTTTAGAATGTTTA------ATTGT--A-GGAAAGCACGTATCCGCCTATTTTACCCATTAAATACGA-AACGAT----------------ACAAGTGAATTATTAATT---------------------------------------------CATTTGA--CCCAAAATCCGCAT----------------------------------------------------------------------------------------------------------AATAAACTGATTATTTT------AATATAAAACA--------------------------------------------------------------------------AATAT-----------------T-------TA-------TATTATTTAATTTTTGAACATTTAAAACAGCACAGTTGAAAC------------CC---TATAACTACCAAATAAAC-----------------ACGACAACC---AAGTGAAGACAAACCAACA--ATTAGTGC-ATATTCTT-TTAA-AACT----------CTATAAATCTACCGTTATTT----------------TAACCGAAAATCTGTAAAA----AGTCTATAAAACTA----------------TATTTT-CGTGAA-ACTAACTCAACGCGTGTAATCGAAAAGCGTASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTAAAACAGCACAGTTG....................................................................................................................................................................................................................................................................1911.00100010000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAACTCAACGCGTGTAATCGAAA......2411.00100000010000
.........................................................................................................................................................................................................................................ATTTTACCCATTAAATACGA-AAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC-----------------ACGACAACC---AAGTGAAGAC......................................................................................................................................................................................2111.00100100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT-CGTGAA-ACTAACTCAACGCGTGTA.............2711.00101000000000
........................................................................................................................................................................................................................................................TACGA-AACGAT----------------ACAAGTGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAA-ACTAACTCAACGCGT................2011.00100000010000
................................................................................................................................................................................................................GT--A-GGAAAGCACGTATCCGCCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
............................................................................................................................................................................................................................CACGTATCCGCCTATTTTACCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-ACTAACTCAACGCGTGTAAT...........2111.00100000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGC-ATATTCTT-TTAA-AACT----------CT....................................................................................................................................2111.00101000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCAACGCGTGTAATCGAAAAG....2411.00100000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC-----------------ACGACAACC---AAGTGAAGACAAACCAAC..............................................................................................................................................................................2911.00100000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TTAA-AACT----------CTATAAATCTACCGTT......................................................................................................................2511.00100000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAACTCAACGCGTGTAATCGAAAAGC...2711.00100000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAATCTACCGTTATTT----------------TAACCGA...........................................................................................2511.00100000010000
droEug1
CAGAAACAA-----------------------------------------------------------------------AAGATAT--------GTAGGATG------TTGGTTCTTTCAAGATTTTAGTTAAACAAAT-------------------------------------------------------------------------------------------------------------ATCC---------------------------------------------------------------------------------------------------------GTGAGGTAGTTTCATAAA-TCAAACAAAAAGCATATATCCGTATAATAAACCTAAAAACTTGTTAAAACAAACT--------------------------------------------------CCA------AATCCAGAACT--------------------------------------------------------------------------AATTG-T---------------T-------ATAAAAATTAAATAT-----------------------------TTGATAC------------TCCATTCTAGCTACAAAACAAAC-----------------TCAACAAAC---AAGTGAAAACAAACCAATG--ATCAGTGC-TTGCTATT-TTAAAAAAC---------CCTGTTAATCTATTGCTCTTT----------------TAACTAAAAATCTTAAAAA----A----ATATAACTT----------------TAGTTTCCGTGAA-ATTA-----ACGCGTGTAATCGAAAAG----SizeHit CountTotal NormTotal
No Reads
droBia1
TTAAAAACA------------------------------------------------------------TATGAAAATAAACTTAAATTTTTTTTATAGTATTTAATTAT--------------------TA-----GGGATTTTATAAGCCCCAAAGAATACCC-CTTAAAATGATAAT---TTT--ACGAACATTGA------G---------------------------------------------CA-AATAAAAAATCTTAAAAAACCAAC---------------------------TTCAATTGATTTTA-------------------------------------------------------------------------------------------------------------------------------TAGTATTTAAATCACTTTTAC--------------A---ATC-------------------------CTAAAAATAA-----------------------------CC----------------------CAT-T-------------------------------------TTTTACACTTTACAACACTTAAAACCGCACAGTTAAACC------------CCTACTATAGCTCCAGAACAAAC------------------CTACAACCCAGCAGTGAAAACTAACCCATA--GACAGTGC-TTGCTATT-TTAAAAACT----------CCACAAATCTATCGTTATTT----------------TAACCAAAACCCTGTAAGC----AGTCAATAAAACTA-----------------------CGTGAA-ATT------ACGCGTG-AATCGAAAATCGTASizeHit CountTotal NormTotal
No Reads
droTak1
TACAGAAAA-----------------GACT-------------GTAAAATAATCGTAGTAAA-----------------------------------------------T--------------------TCAGTCAAGT-------------------------------------------------------------------------------------------------------------GTTC---------------------------------------------------------------------------------------------------------TAGAAGTGCATCTAAAAAATAAAACCAAG-----------------------------------------AA--------------------------------------------------AATAA------AATATAAAACTATTTT------AGGGAAA----------------------------------CTTAAAAATTTAATCAAAGTTTATAAAGTTTCAAAATCTCCCCA-GATTTGTA--------CTAAATTTTATTTTAAAACAATTAAAACAGCACAGTTTTAAT------------CCAAATACAGCAATAACATTAAC-----------------TCAACAAAC---AAGTTAAAATTACCCAATG--ATCAGTGC-ATTCTATT-TTAAATACT----------CTTAAAACCTATTGTTCTTT----------------TAACCGTAAATCTGTAACAAA-AAAAATAATAC-CCA----------------AATTTCCCGTGAA-ATTA-----ACGCGTGTAATCGAAAAACGTASizeHit CountTotal NormTotal
No Reads
droEle1
TAAACATTTCAGTGCACTTTTTACACTTGTACCTGCTGCCCCTGAAAAATATTC------------------GCAAAGAAACCT-----------------------------------------------------------------GCAACAAA----ACCACAA-AAACGCTGATATTATTT--ACAAAAATTGAAAATCCAATAT--T-CGTATATTTTT--------------------------------------------------------------------------TTTGACTCCGCGAACTCTTA-------------------------------------------------------------------------------------------------------------------------------TAGTATTTTATTAAGTTTTAATTATAATTTTTCCTACTTCTCTGAAA------AATGGTATA--------------------------------------------------------------------TAAAT-----------------T-------T--------ATACATTTTATTTTATAACAATTAAAACAGCACAGTCAAAAT------------CCCAATATAACTATAAAATAAAC-----------------ACCACAAAC---AAGTGAAA-----CCATAG--ATCAATGA-ATGCTATC-TTAAAAACT----------ATTAAAATCTATAGTTCTTT----------------TAACCAAAAATC---------------AATTAAACTA----------------TACTTTCCGTGAA-ATTT-----ACGCGTGTAATCGAAAAAAGTASizeHit CountTotal NormTotal
No Reads
droRho1
AAAAAACAT-----------------GTAA-------------A------------------------------------------------------------------------------------------------------------ACCAA----ACCACTC-AAACTGGGAATTACTTT--ATAAAAATTTAAAATCCGTTAT--C-CAAACCTTTGTATCTGCCTAC----------AACTACAA-AATGAAACACGCTAA--AATAAAC---------------------------TACAAGAGTTTCTC-------------------------------------------------------------------------------------------------------------------------------TAGTATTTAATCAAATTTCAATTTACATTTTTCGTACTCCTCTGAAA------AAGACTTTATTGAA-----------------------------------------CTTTACAATTTAAT--------------------------------------C--------AAACATTTTATTTTAAACCAATTTAAACAGCACAGTTGAAAT------------CGTACTATAGCTATTAAATAAAC-----------------ACCACCATC---AAGTGAAAGCAAACCAATG--TTCAATGAAATGCTATT-TTAAAAACT----------ATGTAAATCTATCGTTCTTT----------------TAATCGAAAATCT---------------ATTAAACTA----------------TATTTTCCGTGAA-ATTA-----ACGCGTGTAATCGAAAAACGTASizeHit CountTotal NormTotal
No Reads
droFic1
TTAACATAT-----------------TCAC-------------CCTAA---AAACAAACAACTAAAATATGTGAAAACAAAAGGAAT--------TTAC------------AGTTCTACTACGTTTTA------------------------CGTGT----GCA---GTTAATTTAT-------------------------------------GATATCTATGTATCTA----CTATACT-ATTAAAAAAGA-A-----------TAAAAAAAAAAC----CAAT----------------------------TA--ACAACCTTTGGTTTTTTTGTTACATTTA--CCCATA-----------------------------------------------------------------------------------------------------------------------------------ATC-------------------------AGGAAAATGCAAAATTTTTGAGCTGCTGCCCTTATAACACA----------------------AGT-T-----------------T-------T--------CTAAACTCTATATTGAAAGAATTAAATCAGCACAGTTTGAATTTTATTTGGCCATCTAACACAGCTATAAAATAAAC-----------------ACATCAAAC---AAGTAAAATA---------------TAAT-ATGCTCTT-TTATGAACTACGT------GTGTAAACCAATCGTTCTTT----------------TAACCGAAAACCTGTAAAG----AATATATAAAACTA----------------TATTTTCCGTGAAAATTA-----ACGCGTGTAATCGAAAAACGTASizeHit CountTotal NormTotal
No Reads
droKik1
TTAAAAAAC-----------------TCAC-------------ATAAAGTAAACCAAACAAA-----------------------------------------------T--------------------TT-----GAA-------------------------------------------------------------------------------------------------------------ATTT---------------------------------------------------------------------------------------------------------GAGAAGTACATAAAAA-------------------TATATGAA-----TATTTAAATACTCTTTGCAATAAATATAATTTATAAAAAATTGTATTTAATAAA--------------GTGATCA----------------------------------------------------------------------------------------------------------------------AATTCCT---------TGCCA-------TTTCAGC----------------------------------------------TTTGAAATACCCAAATCCAAACTGTTTTTATATTAATG---AAGTGAA-CCAAACCAATATAATCCGTGA-AACTTATTCTTATAAACTACAAAAAACC-------CGGGTCGTTCTTTTATAAACCAAAAAAATTAACTTAAAATCTACAAAGAAAAAATCTATAAAAATATCTAAAAACAAACCTATATT-----------TTA-----ATGCGTGTAATTGACAAACCTGSizeHit CountTotal NormTotal
No Reads

Generated: 05/18/2015 at 06:54 PM