ID:

dsi_13625

 Coordinate:

2r:5425747-5425896 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

CDS [2r_5425897_5426070_-]; exon [2r_5425897_5426268_-]; intron [2r_5422840_5425896_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TCGGCCTGCATGTCCACACGGCCACCTTGATGATCGGATTGTGGCACCTGGTAAGTGCACCAAGCGGGGTACCCATTAACCCTTTCCAGTACACGGTGGACACATACATGCGTGTGTGTATATCGAGGTACACCCACGCATGCAGTCCTGCGGCATTTGCGAAAAACCTTTGACCCTGCTCAGTGTCACGCAAGGGAAAAATCAATCAGCCAATGCCTGCAAAACTTTGCGAAGACGAGCCAACTCTGCA
**************************************************....((((((..((((((((...((.......(((((((....((..((((.....((((((((.((((((......)))))).))))))))..))))..))....))).))))......))))))))))..))).)))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M025
embryo
 M023
head
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
..................................CGGATTGTGGCACCTGGTAAG................................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0
................................ATCGGATTGTGGCACCTGTT...................................................................................................................................................................................................... 20 1 1 2.00 2 0 2 0 0 0 0 0 0
......................CACCTTGATGATCGGATTGTGGC............................................................................................................................................................................................................. 23 0 1 2.00 2 1 1 0 0 0 0 0 0
.......................ACCTTGATGATCGGATTGTGG.............................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0
...................GGCCACCTTGATGATCGGATG.................................................................................................................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0
......................CACCTTGATGATCGGATTTTGGCACCC......................................................................................................................................................................................................... 27 2 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................TGCGAAGACGAGCCAACTCTGC. 22 0 1 1.00 1 0 0 0 0 1 0 0 0
............................GATGATCGGATTGTGGCACC.......................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0
...................GGCCACCTTGATGATCGGATT.................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................GATCGGATTGTGGCACCT......................................................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0
.......................ACCTTGATGATCGGATTGTGGC............................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 1 0 0 0 0 0
...........................TGATGATCGGATTGTGGCACCTGG....................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0
.............................ATGATCGGATTGTGGCACC.......................................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0
......................CACCTTGATGATCGGATTGTGGCACCT......................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................CTTGATGATCGGATTGTGGCACCTGTT...................................................................................................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................CGAAGACGAGCCAACTCTGC. 20 0 1 1.00 1 0 1 0 0 0 0 0 0
......................CACCTTGATGATCGGATTGTGGCACC.......................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................TACACGGTGGACACCTCCATGCG.......................................................................................................................................... 23 2 1 1.00 1 0 0 0 0 0 1 0 0
.......................ACCTTGATGATCGGATTG................................................................................................................................................................................................................. 18 0 1 1.00 1 0 0 1 0 0 0 0 0
...............ACACGGCCACCTTGATGATCGG..................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 1 0 0 0
...................GGCCACCTTGATGATCGGATTGTGG.............................................................................................................................................................................................................. 25 0 1 1.00 1 0 0 0 1 0 0 0 0
......................CACCTTGATGATCGGATTGTGGCT............................................................................................................................................................................................................ 24 1 1 1.00 1 0 1 0 0 0 0 0 0
.........................CTTGATGATCGGATTGTGGCACC.......................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0
........................................................................................................................................TGCATGCAGTCCTTCGGTAT.............................................................................................. 20 3 3 0.67 2 0 0 0 2 0 0 0 0
.......................................................................................................................................ATGCATGCAGTCCTTCGGTAT.............................................................................................. 21 3 2 0.50 1 0 0 0 1 0 0 0 0
............................................CACCTGGTAAGGGCA............................................................................................................................................................................................... 15 1 2 0.50 1 0 0 0 0 0 0 1 0
....................................................................................................................................CGCATGCATGCAGTCCTTCGG................................................................................................. 21 3 4 0.25 1 0 0 0 1 0 0 0 0
...............................................................................................................GTGTGTGTATATCAAGG.......................................................................................................................... 17 1 4 0.25 1 0 0 0 1 0 0 0 0
.................................TCGGATTGTGGCGCCTGT....................................................................................................................................................................................................... 18 2 5 0.20 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................CAAGGGGAAAAGAAATCAGCC....................................... 21 3 7 0.14 1 0 0 0 0 0 0 0 1
..............................................................................................................................................................GCGAATAACCTTTGATC........................................................................... 17 2 12 0.08 1 0 0 0 0 0 0 1 0
....................GCCTCCTTGGTGATCGG..................................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 1 0
................................ATCCGATTGTAGCACC.......................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 1 0

Anti-sense strand reads

AGCCGGACGTACAGGTGTGCCGGTGGAACTACTAGCCTAACACCGTGGACCATTCACGTGGTTCGCCCCATGGGTAATTGGGAAAGGTCATGTGCCACCTGTGTATGTACGCACACACATATAGCTCCATGTGGGTGCGTACGTCAGGACGCCGTAAACGCTTTTTGGAAACTGGGACGAGTCACAGTGCGTTCCCTTTTTAGTTAGTCGGTTACGGACGTTTTGAAACGCTTCTGCTCGGTTGAGACGT
**************************************************....((((((..((((((((...((.......(((((((....((..((((.....((((((((.((((((......)))))).))))))))..))))..))....))).))))......))))))))))..))).)))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
......................................................................................................................................GTACGTACGTCAGGAAGCCAT............................................................................................... 21 3 3 1.33 4 4 0 0 0 0
.......................................................................................................................................TACGTACGTCAGGAAGCCATA.............................................................................................. 21 3 2 0.50 1 1 0 0 0 0
.....................................................................................................................................................................................................................................GCATCTGCTCGGTGGGGACG. 20 3 4 0.25 1 0 1 0 0 0
....TGACGTACAGGTGTACCAGT.................................................................................................................................................................................................................................. 20 3 8 0.13 1 1 0 0 0 0
...................................................................................................................................................................................................................................ACGCTTCGGCTCGGT........ 15 1 8 0.13 1 1 0 0 0 0
.......................TGGAACTAGCAGCCTGACA................................................................................................................................................................................................................ 19 3 12 0.08 1 0 0 0 1 0
.....................................................................................................................................................................................................................................TCTTCTGTTCTGTTGAGACG. 20 3 14 0.07 1 0 0 1 0 0
.................................................................................................................................................................................................CCCTGTTTAGATAGTCG........................................ 17 2 19 0.05 1 0 0 1 0 0
.......................................................................................................................................................................................ACAGTGCATGCCCTT.................................................... 15 2 20 0.05 1 0 0 0 0 1
....................................................................................................................................................................................................................TAAGGATGTTTTGAAAC..................... 17 2 20 0.05 1 0 1 0 0 0

Generated: 04/23/2015 at 01:59 PM