ID:

dsi_13624

Coordinate:

3r:10082337-10082486 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-25.9	-25.8	-25.7

Flybase annnotation

exon [3r_10082487_10082642_-]; five_prime_UTR [3r_10082487_10082642_-]; intron [3r_10082016_10082486_-]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TTTTTCTGAAAATTGTGCGCATCTCCATGTGAATGCCGCACGGCGCGATAGTAAGTATAAAGCGCGGCTAGCAGGGCATGTGGCTAGAGGAAAACACGAACACGGCGAAAGCTTGCAACATGAAAAGTCCACATTGTGGCACACATTCGCTCACAAACAATAATAAATTGAACGCAGAGCGAATCATAACAAAAAAATGTCGGTTATCAAAGAATATTCAAAATGTGGCAGCCAGTGCGGGCATCCCGGT ************************************************((((((.....((.(((((.....))).((((............))))....))))....))))))..........((((((...)))).))..((((((((.....((((.....))))......))))))))................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	SRR902009 testis	SRR618934 dsim w501 ovaries	M025 embryo	GSM343915 embryo	SRR553488 RT_0-2 hours eggs	M024 male body	SRR553487 NRT_0-2 hours eggs
....TCTGAAAATTGTGCGCATCTCCATG.............................................................................................................................................................................................................................	25	0	1	2.00	2	2	0	0	0	0	0	0	0
...........ATTGTGCGCATCTCCA...............................................................................................................................................................................................................................	16	0	1	1.00	1	0	0	1	0	0	0	0	0
....................................................................................TAGAGGAAAACACGAACACGG.................................................................................................................................................	21	0	1	1.00	1	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................ATTCAAAATGTGGCAGCCAGT..............	21	0	1	1.00	1	0	0	0	1	0	0	0	0
....................................................AAGTGTAAAGCGCGGCTGGCAT................................................................................................................................................................................	22	3	1	1.00	1	0	1	0	0	0	0	0	0
................................................................GGGCTCGCAGGGCTTGTGGCT.....................................................................................................................................................................	21	3	2	0.50	1	0	0	0	0	1	0	0	0
.................................................................GGCTAGAAGGGCATG..........................................................................................................................................................................	15	1	6	0.17	1	0	0	1	0	0	0	0	0
.............................................................GCCCGGCTAGCAGAGCAT...........................................................................................................................................................................	18	2	6	0.17	1	0	0	1	0	0	0	0	0
..................................................................GCTAGAAGGGCGTGTGG.......................................................................................................................................................................	17	2	7	0.14	1	0	0	0	0	0	1	0	0
..............................................................................................................................................................................................AAAAAAGTGTCGGTGATC..........................................	18	2	8	0.13	1	0	0	0	0	0	0	1	0
........................................................................................................................TGAGAATTCCACGTTGTGGC..............................................................................................................	20	3	8	0.13	1	0	0	0	0	0	0	0	1
.............................................................................................................AGCTTGCATCATGAAAACTT.........................................................................................................................	20	3	13	0.08	1	0	0	1	0	0	0	0	0
...............................................................................................................................................................ATACTAAATTGAACGG...........................................................................	16	2	20	0.05	1	1	0	0	0	0	0	0	0

Anti-sense strand reads

AAAAAGACTTTTAACACGCGTAGAGGTACACTTACGGCGTGCCGCGCTATCATTCATATTTCGCGCCGATCGTCCCGTACACCGATCTCCTTTTGTGCTTGTGCCGCTTTCGAACGTTGTACTTTTCAGGTGTAACACCGTGTGTAAGCGAGTGTTTGTTATTATTTAACTTGCGTCTCGCTTAGTATTGTTTTTTTACAGCCAATAGTTTCTTATAAGTTTTACACCGTCGGTCACGCCCGTAGGGCCA ************************************************((((((.....((.(((((.....))).((((............))))....))))....))))))..........((((((...)))).))..((((((((.....((((.....))))......))))))))................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	O001 Testis	M024 male body	SRR618934 dsim w501 ovaries	M025 embryo	SRR553488 RT_0-2 hours eggs
.................................................................CCGATCGTCCCGTACACC.......................................................................................................................................................................	18	0	1	2.00	2	2	0	0	0	0
..........................................................TTTCGCGCCGATCGTCCCGTA...........................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0
.....................................................................................................TGCCGCTTTCGAACGTTGTAC................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0
.......................................................................................................................TACTTTTGAGGTGTCACA.................................................................................................................	18	2	12	0.33	4	0	4	0	0	0
......................................................................................................................ATACTTTTGAGGTGTCACA.................................................................................................................	19	3	20	0.25	5	0	2	0	3	0
..............................................................GCGCCGATCGGCCCG.............................................................................................................................................................................	15	1	5	0.20	1	0	0	1	0	0
.....................................................................TCGGCCCGTACACCCAT....................................................................................................................................................................	17	2	14	0.07	1	0	0	1	0	0
.....................................................................................................................TATACTTTTGAGGTGTCACA.................................................................................................................	20	3	14	0.07	1	0	0	0	0	1

Generated: 04/24/2015 at 10:25 AM