ID:

dsi_13623

 Coordinate:

3l:3678382-3678531 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-14.6 -14.6 -14.5 -14.5

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TTTTGAGAGCAGACGAACGCACATCGCGAACGCCAATTGGGGATCGTAAAGTCGGGAAAACAGCGTCGCGCTCACTTCGAAATAGTAGAAACCCAATAAACATTAAGTCCAAATCGCATTAGCAATGTTCTCAGTTCCGATTTGATTGAATTTCGCGGTGCAAAGCGAAAGAGAATTTTGAAACGTTTGCTTTTTGTTGTTTCGCCGCTCTCTTCGTTGTTGTTCTTTTTGTTGTTTTTTCCGGCGCGTC
***************************************************************************...............................((..............(((..(((((..................((((((........)))))))))))..)))..))****************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR618934
dsim w501 ovaries
 GSM343915
embryo
 M025
embryo
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 O002
Head
 SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
...........................................................................TTCGAAATAGTAGAAACC............................................................................................................................................................. 18 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0
.......................TCGCGAACGCCAATTGGGGATCG............................................................................................................................................................................................................ 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
.......................TCGCGAACGCCAATTGGGGA............................................................................................................................................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................CAAAGCGAAAGAGAATTTTGAAAC.................................................................. 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
......GAGCAGACGAACGCACATCGCGAA............................................................................................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....GAGAGCAGACGAACGCACATCGCGAAC........................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
....GAGAGCAGACGAACGCACATCG................................................................................................................................................................................................................................ 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
..........................................ATCGTAAAGTCGGGAAAACAGCG......................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0
...............................................AAAGTCGGGAAAACAGCG......................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
..................................AATTGGGGATCGTAGAG....................................................................................................................................................................................................... 17 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................TTTTGTTGTTTTTTCCGGCG.... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................CGCGAACGCCAATTGGGGATCGT........................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................ATCGTAAAGTCGGGAAAACAGCGT........................................................................................................................................................................................ 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...TGAGAGCAGACGAACGCACATCGC............................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
TTTTGAGAGCAGACGAACGCACAT.................................................................................................................................................................................................................................. 24 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
...........GACGAACGCACATCGCGAACGCC........................................................................................................................................................................................................................ 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.......AGCAGACGAACGCACATCGCG.............................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.......AGCAGACGAACGCACATCG................................................................................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................TCGCGAACGCCAATTGGGG................................................................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
......................ATCGCGAACGCCAATTGGGGAT.............................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
.........CAGACGAACGCACATCGCGAACGAC........................................................................................................................................................................................................................ 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........CAGACGAACGCACATCGC............................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........CAGTCGAACGCACATTGCG.............................................................................................................................................................................................................................. 19 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................GTTCTCAGTTCCGATTGTA......................................................................................................... 19 2 3 0.67 2 0 0 2 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................TGTTTTGCCGCTGTCTTCGTTT............................... 22 3 3 0.67 2 0 2 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................TGTTTTGCCGCTGTCTTCGTTTT.............................. 23 3 3 0.67 2 0 2 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................TCTCAGTTCGGATTTGA......................................................................................................... 17 1 4 0.25 1 0 0 0 0 0 0 0 1 0 0 0 0 0
........................................GGATCGTAACTTCGGGA................................................................................................................................................................................................. 17 2 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................GGATCCTAACCTCGGGAAA............................................................................................................................................................................................... 19 3 6 0.17 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................................TAGTTGTTGTGCTTTTTGATGTT.............. 23 3 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..............GAACGGACACCGCGAACGGCAA...................................................................................................................................................................................................................... 22 3 9 0.11 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.......ACCAGTCGAACGCACATTG................................................................................................................................................................................................................................ 19 3 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0 0 0
............................AACGCCAATCGGGGTTC............................................................................................................................................................................................................. 17 2 11 0.09 1 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................CCAGATCGCACTAGCAA............................................................................................................................. 17 2 12 0.08 1 0 0 0 0 0 0 0 0 1 0 0 0 0
...............................GCCAATTGTGGAACTTAAAG....................................................................................................................................................................................................... 20 3 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 1
................................................................GTCGTACTCACTTCGAA......................................................................................................................................................................... 17 2 14 0.07 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...................................................................................................ACATTCAGTCCAAAT........................................................................................................................................ 15 1 15 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.................CTCGCGTCGCGAACGCCA....................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
............................TATGCCAATTGGGGATCGG........................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0

Anti-sense strand reads

AAAACTCTCGTCTGCTTGCGTGTAGCGCTTGCGGTTAACCCCTAGCATTTCAGCCCTTTTGTCGCAGCGCGAGTGAAGCTTTATCATCTTTGGGTTATTTGTAATTCAGGTTTAGCGTAATCGTTACAAGAGTCAAGGCTAAACTAACTTAAAGCGCCACGTTTCGCTTTCTCTTAAAACTTTGCAAACGAAAAACAACAAAGCGGCGAGAGAAGCAACAACAAGAAAAACAACAAAAAAGGCCGCGCAG
******************************************************************...............................((..............(((..(((((..................((((((........)))))))))))..)))..))*************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 M024
male body		 M025
embryo
.....................................................................................................................................................................................................ACGAAGCGTCGAGATAAGCAA................................ 21 3 3 3.67 11 11 0 0 0 0 0 0 0
..................................................................................................TTGTAATTCAGGTTT......................................................................................................................................... 15 0 5 3.60 18 3 10 0 2 2 1 0 0
.....................................................................................................................................................................................................ACGAAGCGTCGAGATAAGCA................................. 20 3 4 3.00 12 12 0 0 0 0 0 0 0
........................................................................................................................................................................................................AAGCGTCGAGATAAGCAA................................ 18 2 13 1.54 20 20 0 0 0 0 0 0 0
........................................................................................................................................................................................................AAGCGTCGAGATAAGCA................................. 17 2 20 1.15 23 23 0 0 0 0 0 0 0
.......................................................................................................................ATCGTTACAAGAGTCAAGGC............................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0
.........................................................................................................................CGTTACAAGAGTCAAGGC............................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0
...............................................................................................................TTAGCGTAATCGTTACAAGAGTCAAGGCT.............................................................................................................. 29 0 1 1.00 1 0 0 0 1 0 0 0 0
....CTCTCGTCTGCATGAGTGAA.................................................................................................................................................................................................................................. 20 3 3 0.33 1 0 0 0 0 1 0 0 0
......................................................................................................................................................................................................CAAAGCGGTGAGCGAAGTAACA.............................. 22 3 3 0.33 1 0 0 0 0 0 0 1 0
.................................................................................................TTTGTAATTCAGGTT.......................................................................................................................................... 15 0 5 0.20 1 0 0 0 0 1 0 0 0
............................................................................................................GGTTTGGCGTAATCGT.............................................................................................................................. 16 1 5 0.20 1 0 0 0 0 0 1 0 0
...............................CGGCCAACCCCTAGCTTTTC....................................................................................................................................................................................................... 20 3 8 0.13 1 0 0 0 0 0 0 0 1
................................................................................................................................AGAGTCAAGGCCACACTG........................................................................................................ 18 3 20 0.10 2 0 2 0 0 0 0 0 0
............................................................ATCGCAACGCGAGTGAA............................................................................................................................................................................. 17 2 12 0.08 1 0 0 0 0 1 0 0 0
.................GAGCGCAGCGCTTGCGGT....................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:3678332-3678581 - dsi_13623 T---TTT--GAGAGCAGACGAACGCACATCGCGAACGCCAA----------TTGGGGATCGTAAAGTCGGGAAAACAG-----------------CGTCGCGCTCACTTCGAAATA-GTAG------AAACCCAATAAACATTAAGTCCAAATCGCATTAGCAATGTTCTCAGTTCCGA-TTTGATTGAATTTCGCGGTGCA-AAGCGAA------------------AGAGAATTTTGAAACGTTTGCTTTTTG-TTGT----TTCGCCGC-TCTCT---------TCG-------------TTGTTGTTCT-TTTT-GTTGT-TTTTTCCGGCGCGTC
droSec2 scaffold_2:3781797-3782034 - T---TTT--GAGAGCAGACGAACGCACATCGCGAATGCCAA----------TTGGGGATCGTAAAGTCGGGAAAACAG-----------------CGTCGCGCTCACTTCGAAATA-GTAG------AAACCCAATAAACATTAAGTCCAAATCGCATTAGCAATGTTCTCAGTTCCGA-TTTGATTGAATTTCGCGGTGCA-AAGCGAA------------------AGAGAATTT-GAAACGTTTGCTTTTG--T-GT----TTCGC-GC-TCT-C---------TCG-----------T-GTG------T-CTTTTG-TG---TTTTTCGGCGCGTC
dm3 chr3L:3787730-3787979 - T---TTT--GAGAGCAGACGAACGCACATC--GAACGCCAA----------TTGGGGATCGTAAAGTCGGAAAAACAG-----------------CGTCGCGCTCGCTTCGAAATA-GA----AAAAAAACACAATAAACATTAGGTCAAAATCGCATTGGCAATCTTTTAAGTTTCGA-TTTGATTTAATTTCGCGGTGCA-AAGCGAA------------------AGAGAATTTTGAAACGTTTGATTTTTG-TTGT----TTCGCCGC-TCTCT---------TCG-------------TTGTTGTTCT-TTTT-GTTGT-TTTTTCCGGCGCGTC
droEre2 scaffold_4784:6483340-6483577 - T---TTT--GGGAGCAGACGAACGCGCATC--GAACGCCAA----------TTGGGGATCGCAAAGTCGGGAAAACAA-----------------CGCCGCGCTCGCTTCGCAACA-G----------------ATAAACATTCACATAAAATCGCATTGGCAAAGTTTTCAGTTCCGA-TTCGGTTGAATTTCGCGGTGCA-AAACGAA------------------AGAGAATTTCAAAACGTTTGCTTTTC--TTGT----TTCGCCGC-TCTTT---------TCG-------------TTGTTGTTCT-TTTT-GTTGTTTTTTTCCGGCGCGTC
droYak3 3L:4343657-4343906 - T---TTT--GAGAGCAGACGAACGCGCATC--GAACGCCAA----------TTGGGGATCGTAAAGTCGGGAAATCAA-----------------CGCCGCGCTCGCTTCGAAATA-CA----AAGAAAACCCCACAAACATTCAGTTAAATTCGCATTGGCAAAGTTTTCAGTTCCGA-TTTGATTGAATTTCACGGTGCA-AAGCAAA------------------AGAGAATTTTCAAACGTTTGCTTTTG--TTGT----TTCGCCGC-TTCGT---------TCG-------------TTGTTGTTCT-TTTT-GTTGTTTTTTTCCGGCGCGTC
droEug1 scf7180000409466:1534663-1534858 - G----------------------------------------------------------------------AAAACAA-----------------CGTCGCGGTCGCTGTGCAAAACG-AGAAAAAAAAGCAGAATAAACATAAACAAAAATTCGGATCAACAACGATATTAGCTCCAA-TTTAGTTTAATTTTACGGTGGA-AAGCAAA------------------CGATAATTTATAAGTCTTTGTTTTTGTTTTAT----TTCGCCGC-CTTTT---------TCG-------------TTGT-----T-TTTT-GTTA--TTTTTGCGGCGCGTC
droBia1 scf7180000302428:441684-441885 - T---TTTTCGAACGCAGACGAACTCGC-----GGATA--AA----------TTGTAATTTTGTGGTTCGAGAATTCGACGCCGAGGCCCAGCCGTCGT--CGGTGGCTTTGTTA------------------------------------AATTCCATTAAC-------TAAATTCCAT-TTTAGTTTAATTTCACGCCGAA-AGGCAAA------------------AGATAATTTCGA----------------TTTT----TTCGCCGC-CTTTT---------TCG-------------TTG------T-TTTT-GTTG--TTTTTGCGGCGCGTC
droTak1 scf7180000415785:15971-16185 + T---T-C--GAACGCAGACGAAATCGC-----GGATAAAAATATAACTTTGTTGGGAATTGTTCAGT----AATTCGACGCCGAGGGCAGAACATCGTC--GGTTTCTTCGCCA------------------------------------AATTCCAATAA-------TTTATTTCAACTTTTAGTTTAATTTACCGGTGAAAAAGCAAA------------------ATATAA--------ATTTTGCCTTCT--TTTT----TTCACCGC-CTTTT---------TCG-------------TTG------T-TTTT-GTTG--TTTTTGCGGCGCGTC
droEle1 scf7180000491249:1339475-1339673 + G----------------------------------------------------------------------AAAACAA-----------------AGTCGCGGTCCCTCCGCAAAAAGCAA--AAAAAAAAACAGTAAACAAAAACAAACACTCGGATCAACAACGATATTAGTTCCAA-TTTAGTTTTATTTCGCAGTGAA-AAGCAAA------------------ATATAA----CAAAACTTTGCTTTTG--TTTT----TTCGCCGC-TTTTT---------TCGTAGTT---------TTTTGTTGTTTTTC-GTTA--TTTTTGCGGCGCGTC
droRho1 scf7180000769235:4155-4344 - G--------------------------------------------------------------------GAAAAACAC---------------GTCGTCGCGGTCGCTTCGCAAAA-GAA-------AAACACAATAAACATAAACAAAAACTCGGATCATCAACGATATTAGTTCCAA-TTTAGT-TAATTTCACGGTGAA-AAGCCAA------------------ATATTATTATAAAAGATTTGGTTTTG--TTTT----ATCGCCGC-TCTTT---------TCG-------------TTGT-----T-TTTT-GTTG--TTTTAGCGGCGCGTC
droFic1 scf7180000453052:153598-153786 - G---TG--------------------------------------------------------------GTGAAAAAAA-----------------CGTCGACGCCATCGCGAA-GA-GAA-------CAACACAAAAAACATAAA--CAAATTCGGATCAACGACGATATTAGTTTCAA-TTTAGTTTAATTTCACGGTGAA-GAGGAAA------------------AGATAATTTAAAAACCTCTGTTTTTGT-TTCA----TTCGCCGC-CTTTT---------TCG-------------TTG------T-TTTT-GTTG--TTTTTGCGGCGCGTC
droKik1 scf7180000302577:406868-406997 + A---AT---------------------------------------------------------------------------------------------------------------------------------------------------------------GACATTAGTTCCGA-TTCAGTTAAATTTCTCGAAGAT-TTCCCGA------------------ACTTTGTGTT---AATTTTGTTTTCG--TTGTTGTATTCGCCGC-CTTTT---------TTGCCGTT---------CCGTCTTGT-TTTT-GTTG--CTATTGCGGAGCGTC
droAna3 scaffold_13337:9656434-9656510 + GAATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTACG--------------------------------------------------GCATACGT-TTTT----TTTGCCGCTATTTT---------TCA-CCTTTCGTTTCGTA-------T-TTTT-GTTG--TTTTTGCGACGCGAC
droBip1 scf7180000396569:1684030-1684086 - T---T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC----TTCGCCGC-TATTT---------TCACCTT---------TCGTTTCTAT-TTTT-GTTG--TTTTTGCGACGCGAC
dp5 XR_group6:6846013-6846148 - A---AT---------------------------------------------------------------------------------------------------------------------------------------------------------------ATTATTAGTTTGAA-TTAAAGTTAATTTCACGGCTCA-AAACAAATTTCTAGCCAACGGCAAAAATTA---------GACGCGGCTTTG--TTTT----TTTAAAGT-TTTTTCCGCATTTTGCG-------------TT-------T-TTGT-TTTG--TTTTAGCGGCGCGTC
droPer2 scaffold_41:204932-205067 - A---AA---------------------------------------------------------------------------------------------------------------------------------------------------------------ATTATTAGTTTGAA-TTAAAGTTAATTTCACGGCTCA-AAACAAATTTCTAGCCAACGGCAAAAATTA---------GACGCGGCTTTG--TTTT----TTTTAAGT-TTTTTCCGCATTTTGCG-------------TT-------T-TTGT-TTTG--TTTTAGCGGCGCGTC
droVir3 scaffold_13049:4247303-4247332 + T---ATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTCG-CTTC-ATT----ATCTGTTGCGCGTC
droMoj3 scaffold_6680:2655625-2655654 + T---A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAT-TGCC-GTTGT-GTGTTTCAACACATA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
T---TTT--GAGAGCAGACGAACGCACATCGCGAACGCCAA----------TTGGGGATCGTAAAGTCGGGAAAACAG-----------------CGTCGCGCTCACTTCGAAATA-GTAG------AAACCCAATAAACATTAAGTCCAAATCGCATTAGCAATGTTCTCAGTTCCGA-TTTGATTGAATTTCGCGGTGCA-AAGCGAA------------------AGAGAATTTTGAAACGTTTGCTTTTTG-TTGT----TTCGCCGC-TCTCT---------TCG-------------TTGTTGTTCT-TTTT-GTTGT-TTTTTCCGGCGCGTCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................TTCGAAATA-GTAG------AAACC................................................................................................................................................................................................................1812.00200200000000000000
............................TCGCGAACGCCAA----------TTGGGGATCG.......................................................................................................................................................................................................................................................................................2312.00220000000000000000
............................TCGCGAACGCCAA----------TTGGGGA..........................................................................................................................................................................................................................................................................................2012.00220000000000000000
........................................................................................................................................................................................................CA-AAGCGAA------------------AGAGAATTTTGAAAC.................................................................................................2411.00101000000000000000
...........GAGCAGACGAACGCACATCGCGAA.................................................................................................................................................................................................................................................................................................................2411.00110000000000000000
.........GAGAGCAGACGAACGCACATCGCGAAC................................................................................................................................................................................................................................................................................................................2711.00100000000000100000
.........GAGAGCAGACGAACGCACATCG.....................................................................................................................................................................................................................................................................................................................2211.00100000000000001000
.........................................................ATCGTAAAGTCGGGAAAACAG-----------------CG...................................................................................................................................................................................................................................................2311.00100000000000010000
..............................................................AAAGTCGGGAAAACAG-----------------CG...................................................................................................................................................................................................................................................1811.00100000000000001000
..........................................................................................................................................................................................................................................................................................................................TTTT-GTTGT-TTTTTCCGGCG....2011.00110000000000000000
.............................CGCGAACGCCAA----------TTGGGGATCGT......................................................................................................................................................................................................................................................................................2311.00110000000000000000
.........................................................ATCGTAAAGTCGGGAAAACAG-----------------CGT..................................................................................................................................................................................................................................................2411.00101000000000000000
......T--GAGAGCAGACGAACGCACATCGC....................................................................................................................................................................................................................................................................................................................2411.00110000000000000000
T---TTT--GAGAGCAGACGAACGCACAT.......................................................................................................................................................................................................................................................................................................................2411.00100000001000000000
................GACGAACGCACATCGCGAACGCC.............................................................................................................................................................................................................................................................................................................2311.00100000000001000000
............AGCAGACGAACGCACATCGCG...................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
............AGCAGACGAACGCACATCG.....................................................................................................................................................................................................................................................................................................................1911.00100000000001000000
............................TCGCGAACGCCAA----------TTGGGG...........................................................................................................................................................................................................................................................................................1911.00100000000000100000
...........................ATCGCGAACGCCAA----------TTGGGGAT.........................................................................................................................................................................................................................................................................................2211.00100000100000000000
..............CAGACGAACGCACATCGC....................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
droSec2
T---TTT--GAGAGCAGACGAACGCACATCGCGAATGCCAA----------TTGGGGATCGTAAAGTCGGGAAAACAG-----------------CGTCGCGCTCACTTCGAAATA-GTAG------AAACCCAATAAACATTAAGTCCAAATCGCATTAGCAATGTTCTCAGTTCCGA-TTTGATTGAATTTCGCGGTGCA-AAGCGAA------------------AGAGAATTT-GAAACGTTTGCTTTTG--T-GT----TTCGC-GC-TCT-C---------TCG-----------T-GTG------T-CTTTTG-TG---TTTTTCGGCGCGTCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...........................................................CGTAAAGTCGGGAAAACAG-----------------CGTCGCG..............................................................................................................................................................................................................................................2614.0041102
.............................CGCGAATGCCAA----------TTGGGGATCG.......................................................................................................................................................................................................................................................................................2213.0030003
...........................ATCGCGAATGCCAA----------TTGGGGATCG.......................................................................................................................................................................................................................................................................................2413.0030111
...........................ATCGCGAATGCCAA----------TTGGGGATCGTA.....................................................................................................................................................................................................................................................................................2613.0032010
..............................GCGAATGCCAA----------TTGGGGA..........................................................................................................................................................................................................................................................................................1813.0030003
...............................CGAATGCCAA----------TTGGGGATCG.......................................................................................................................................................................................................................................................................................2012.0020002
............................TCGCGAATGCCAA----------TTGGG............................................................................................................................................................................................................................................................................................1812.0020020
.............GCAGACGAACGCACATCGCGAATG...............................................................................................................................................................................................................................................................................................................2412.0022000
...............AGACGAACGCACATCGCG...................................................................................................................................................................................................................................................................................................................1812.0020020
..........................................................TCGTAAAGTCGGGAAAACAG-----------------CGTCGCG..............................................................................................................................................................................................................................................2712.0021100
...............AGACGAACGCACATCGCGAATG...............................................................................................................................................................................................................................................................................................................2212.0022000
.........................................................ATCGTAAAGTCGGGAAAACAG-----------------C....................................................................................................................................................................................................................................................2212.0020200
......................CGCACATCGCGAATGCCAA----------TTGGGGA..........................................................................................................................................................................................................................................................................................2612.0020011
...................................TGCCAA----------TTGGGGATCGTAAAGTCGGG.............................................................................................................................................................................................................................................................................2611.0010001
.............................CGCGAATGCCAA----------TTGGGGATCGT......................................................................................................................................................................................................................................................................................2311.0010001
............................TCGCGAATGCCAA----------TTGGGGA..........................................................................................................................................................................................................................................................................................2011.0010100
............................TCGCGAATGCCAA----------TTGGGGATCG.......................................................................................................................................................................................................................................................................................2311.0010010
.............GCAGACGAACGCACATCGC....................................................................................................................................................................................................................................................................................................................1911.0010010
................................GAATGCCAA----------TTGGGGATCGTAAA...................................................................................................................................................................................................................................................................................2311.0010001
...........................ATCGCGAATGCCAA----------TTGGGGATC........................................................................................................................................................................................................................................................................................2311.0010001
..........AGAGCAGACGAACGCACATCGCGA..................................................................................................................................................................................................................................................................................................................2411.0010010
.........................................................ATCGTAAAGTCGGGAAAACAG-----------------CGTCG................................................................................................................................................................................................................................................2611.0011000
..........................................................TCGTAAAGTCGGGAAAACAG-----------------C....................................................................................................................................................................................................................................................2111.0011000
......................CGCACATCGCGAATGCCAA----------TTGGG............................................................................................................................................................................................................................................................................................2411.0010001
............................................................GTAAAGTCGGGAAAACAG-----------------CGTCGCG..............................................................................................................................................................................................................................................2511.0010001
...........................ATCGCGAATGCCAA----------TTGGGGA..........................................................................................................................................................................................................................................................................................2111.0010100
............AGCAGACGAACGCACATCGCGAA.................................................................................................................................................................................................................................................................................................................2311.0010010
T---TTT--GAGAGCAGACGAACGCACATCGC....................................................................................................................................................................................................................................................................................................................2711.0010100
..........................CATCGCGAATGCCAA----------TTGGGGATCG.......................................................................................................................................................................................................................................................................................2511.0010100
..............CAGACGAACGCACATCGC....................................................................................................................................................................................................................................................................................................................1811.0010010
..................................ATGCCAA----------TTGGGGATCGTA.....................................................................................................................................................................................................................................................................................1911.0010010
.................ACGAACGCACATCGCGAATGC..............................................................................................................................................................................................................................................................................................................2111.0010001
....................AACGCACATCGCGAATGCCAA----------TTGG.............................................................................................................................................................................................................................................................................................2511.0011000
.........................................................................AACAG-----------------CGTCGCGCTCACTTCGAA...................................................................................................................................................................................................................................2311.0010010
...........................................................CGTAAAGTCGGGAAAACAG-----------------CG...................................................................................................................................................................................................................................................2111.0010100
.........................................................................AACAG-----------------CGTCGCGCTCACTTCG.....................................................................................................................................................................................................................................2111.0010010
.........................................................ATCGTAAAGTCGGGAAAACAG-----------------CG...................................................................................................................................................................................................................................................2311.0011000
.............................................................TAAAGTCGGGAAAACAG-----------------CGTCGCG..............................................................................................................................................................................................................................................2411.0010100
........................................A----------TTGGGGATCGTAAAGTC................................................................................................................................................................................................................................................................................1811.0010001
.......................GCACATCGCGAATGCCAA----------TTGGG............................................................................................................................................................................................................................................................................................2311.0011000
..............................GCGAATGCCAA----------TTGGGGATCG.......................................................................................................................................................................................................................................................................................2111.0010001
T---TTT--GAGAGCAGACGAACGCACATCGCG...................................................................................................................................................................................................................................................................................................................2811.0010010
..........................................................TCGTAAAGTCGGGAAAACAG-----------------.....................................................................................................................................................................................................................................................2011.0011000
...................................TGCCAA----------TTGGGGATCGTAAAGTCG...............................................................................................................................................................................................................................................................................2411.0010001
................................GAATGCCAA----------TTGGGGATCGTA.....................................................................................................................................................................................................................................................................................2111.0010001
...............AGACGAACGCACATCGCGAATGC..............................................................................................................................................................................................................................................................................................................2311.0010001
..............CAGACGAACGCACATCGCGAA.................................................................................................................................................................................................................................................................................................................2111.0010001
dm3
T---TTT--GAGAGCAGACGAACGCACATC--GAACGCCAA----------TTGGGGATCGTAAAGTCGGAAAAACAG-----------------CGTCGCGCTCGCTTCGAAATA-GA----AAAAAAACACAATAAACATTAGGTCAAAATCGCATTGGCAATCTTTTAAGTTTCGA-TTTGATTTAATTTCGCGGTGCA-AAGCGAA------------------AGAGAATTTTGAAACGTTTGATTTTTG-TTGT----TTCGCCGC-TCTCT---------TCG-------------TTGTTGTTCT-TTTT-GTTGT-TTTTTCCGGCGCGTCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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............................................................................................................................................................................................................AGCGAA------------------AGAGAATTTTGAAACGTTTGA...........................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................ATTTTGAAACGTTTGATTTTTG-TTG.................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
T---TTT--GAGAGCAGACGAACGCA..........................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
....................................GCCAA----------TTGGGGATCGTA.....................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................ACGCCAA----------TTGGGGATCGC......................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................ACGCACATC--GAACGCCAA----------TTGGGGAT.........................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.........GAGAGCAGACGAACGCACATC--GAA.................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
....................................................................................................................................................................................................GGTGCA-AAGCGAA------------------AGAGAAT.........................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.............GCAGACGAACGCACATC--G...................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000
............AGCAGACGAACGCACATC--G...................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................TGTTGTTCT-TTTT-GTTGT-TTTTTC.........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................GACGAACGCACATC--GAAC................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................GTAAAGTCGGAAAAACAG-----------------C....................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
............................................................GTAAAGTCGGAAAAACAG-----------------CGTCGCG..............................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................ATCGTAAAGTCGGAAAAACA.......................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................GACGAACGCACATC--GAA.................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................TC--GAACGCCAA----------TTGGGGATCGTAAAG..................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TT--GAGAGCAGACGAACGCACATC--GAA.................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...............................................................................................CGTCGCGCTCGCTTCGAAATA-GA----A........................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............AGCAGACGAACGCACATC--GAA.................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.............GCAGACGAACGCACATC--GAACG...............................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000
.............GCAGACGAACGCACATC--GAA.................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................AA----------TTGGGGATCGTAAAGTC................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
........................................................GATCGTAAAGTCGGAAAAACAG-----------------CG...................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
.................................AACGCCAA----------TTGGGGATCGT......................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................ATCGTAAAGTCGGAAAAACAG-----------------CGTCGCG..............................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.......................GCACATC--GAACGCCAA----------TT...............................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................CGCCAA----------TTGGGGATCGTA.....................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
....................................................TGGGGATCGTAAAGTCGGAAAAACAG-----------------C....................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................GACGAACGCACATC--GAACTG..............................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................CACATC--GAACGCCAA----------TTGGG............................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000
.....................ACGCACATC--GAACGCCAA----------TTGGGGATCG.......................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
............................................................................AG-----------------CGTCGCGCTCGCTTCGAAATA-...............................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................CATC--GAACGCCAA----------TTGGGGAATC.......................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................TTCGCCGC-TCTCT---------TCG-------------TTGTTGT..............................2311.0010000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................GACGAACGCACATC--GAACGCCAA----------TTT..............................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........GAGAGCAGACGAACGCACATC--GAAC................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
...................GAACGCACATC--GAACGCCAA----------TTGG.............................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................CGAACGCACATC--GAACGCCAA----------TTGGG............................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................ATCGTAAAGTCGGAAAAACAG-----------------CG...................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................GCCAA----------TTGGGGATCGTAAAGT.................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................C-TCTCT---------TCG-------------TTGTTGTTCT-TT........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.................................AACGCCAA----------TTGGGGATCGC......................................................................................................................................................................................................................................................................................1911.0010000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................C--GAACGCCAA----------TTGGGGATCGTA.....................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................TTAAGTTTCGA-TTTGATTTAATT....................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................GGAAAAACAG-----------------CGTCGCGCTCGCTTCGA....................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................AACGCCAA----------TTGGGGATCGTAAAGTCGGA.............................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
........................................A----------TTGGGGATCGTAAAGTCGG..............................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
................................................................................................................................................................................................................................................................................................................TGTTGTTCT-TTTT-GTTGT-TTTTTCC........2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................T---------TCG-------------TTGTTGTTCT-TTTT-GTTGT-TTTTT..........2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........GAGAGCAGACGAACGCACATC--GA..................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..................CGAACGCACATC--GAACGC..............................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................CGCATTGGCAATCTTTTAAGTTTC...................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................CACATC--GAACGCCAA----------TTGGGGAT.........................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................GGGATCGTAAAGTCGGAAAAACAG-----------------CG...................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................A----------TTGGGGATCGTAAAGTCGGA.............................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..................................................................TCGGAAAAACAG-----------------CGTCGCGCTCGCT........................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........GAGAGCAGACGAACGCACAT.......................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.....................ACGCACATC--GAACGCCAA----------.................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............CAGACGAACGCACATC--GAAC................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................CT---------TCG-------------TTGTTGTTCT-TTTT-GTTG.................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................A----------TTGGGGATCGTAAAGTCGGATC...........................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................GCACATC--GAACGCCAA----------TTGG.............................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................ACATC--GAACGCCAA----------TTGGGGATC........................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...........GAGCAGACGAACGCACATC--G...................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
droEre2
T---TTT--GGGAGCAGACGAACGCGCATC--GAACGCCAA----------TTGGGGATCGCAAAGTCGGGAAAACAA-----------------CGCCGCGCTCGCTTCGCAACA-G----------------ATAAACATTCACATAAAATCGCATTGGCAAAGTTTTCAGTTCCGA-TTCGGTTGAATTTCGCGGTGCA-AAACGAA------------------AGAGAATTTCAAAACGTTTGCTTTTC--TTGT----TTCGCCGC-TCTTT---------TCG-------------TTGTTGTTCT-TTTT-GTTGTTTTTTTCCGGCGCGTCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............AGCAGACGAACGCGCATC--GA..................................................................................................................................................................................................................................................................................................................2011.0010000010
......................CGCGCATC--GAACGCCAA----------TTGGGGATC........................................................................................................................................................................................................................................................................................2611.0010000010
......................................................................GAAAACAA-----------------CGCCGCGCTCGCTTCGC....................................................................................................................................................................................................................................2511.0010001000
.......................GCGCATC--GAACGCCAA----------TTGGGGATC........................................................................................................................................................................................................................................................................................2511.0010000010
..........................CATC--GAACGCCAA----------TTGGG............................................................................................................................................................................................................................................................................................1811.0010000010
......................................................................................................................................................................................................................................AGAATTTCAAAACGTTTGCTTT........................................................................................2211.0010000100
........................CGCATC--GAACGCCAA----------TTGGGGATCG.......................................................................................................................................................................................................................................................................................2511.0010000010
...................GAACGCGCATC--GAACGCC.............................................................................................................................................................................................................................................................................................................1811.0011000000
......................................CAA----------TTGGGGATCGCAAAGTCGGGAAA..........................................................................................................................................................................................................................................................................2611.0010000100
...............................................................................................CGCCGCGCTCGCTTCGCA...................................................................................................................................................................................................................................1811.0011000000
.............GCAGACGAACGCGCATC--GA..................................................................................................................................................................................................................................................................................................................1911.0010000010
...............AGACGAACGCGCATC--GAA.................................................................................................................................................................................................................................................................................................................1811.0010000010
droYak3
T---TTT--GAGAGCAGACGAACGCGCATC--GAACGCCAA----------TTGGGGATCGTAAAGTCGGGAAATCAA-----------------CGCCGCGCTCGCTTCGAAATA-CA----AAGAAAACCCCACAAACATTCAGTTAAATTCGCATTGGCAAAGTTTTCAGTTCCGA-TTTGATTGAATTTCACGGTGCA-AAGCAAA------------------AGAGAATTTTCAAACGTTTGCTTTTG--TTGT----TTCGCCGC-TTCGT---------TCG-------------TTGTTGTTCT-TTTT-GTTGTTTTTTTCCGGCGCGTCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................CGAACGCGCATC--GAACGCCAA----------TTGGGGATC........................................................................................................................................................................................................................................................................................3019.00900000000009
...............................................................AAGTCGGGAAATCAA-----------------CGCCGC...............................................................................................................................................................................................................................................2112.00200200000000
..........................CATC--GAACGCCAA----------TTGGG............................................................................................................................................................................................................................................................................................1811.00100100000000
.........................GCATC--GAACGCCAA----------TTGGGGATC........................................................................................................................................................................................................................................................................................2311.00100000100000
....TTT--GAGAGCAGACGAACGCG..........................................................................................................................................................................................................................................................................................................................2011.00100100000000
........................CGCATC--GAACGCCAA----------TTGGG............................................................................................................................................................................................................................................................................................2011.00100100000000
..................CGAACGCGCATC--GAACGC..............................................................................................................................................................................................................................................................................................................1811.00100010000000
................GACGAACGCGCATC--GAACGCC.............................................................................................................................................................................................................................................................................................................2111.00110000000000
...................GAACGCGCATC--GAACGCCAA----------TTGGGGATC........................................................................................................................................................................................................................................................................................2911.00100100000000
................................................................................................................................................................................................................AA------------------AGAGAATTTTCAAACGTTTGC...........................................................................................2311.00100000010000
.........GAGAGCAGACGAACGCGC.........................................................................................................................................................................................................................................................................................................................1811.00100100000000
............................................................................................................................................................................GTTCCGA-TTTGATTGAATTTCACGGTGC...........................................................................................................................................2811.00100100000000
.....................ACGCGCATC--GAACGCCAA----------TTGGGGATC........................................................................................................................................................................................................................................................................................2711.00100100000000
......................CGCGCATC--GAACGCCAA----------TTGGG............................................................................................................................................................................................................................................................................................2211.00100010000000
...............AGACGAACGCGCATC--GAA.................................................................................................................................................................................................................................................................................................................1811.00100010000000
..................................................................................................................................................................................................................................................................GT----TTCGCCGC-TTCGT---------TCG-------------TTGTTGTT.............................2611.00100100000000
...........GAGCAGACGAACGCGCATC--GAAC................................................................................................................................................................................................................................................................................................................2311.00100100000000
.......................................................................AAATCAA-----------------CGCCGCGCTCGCTTCGA....................................................................................................................................................................................................................................2411.00101000000000
...........................................................................................................................................................................................GAATTTCACGGTGCA-AAGC.....................................................................................................................................1911.00100100000000
..........................................................................................................................................................................................TGAATTTCACGGTGCA-AAGCAAA------------------................................................................................................................2311.00100000010000
droEug1
G----------------------------------------------------------------------AAAACAA-----------------CGTCGCGGTCGCTGTGCAAAACG-AGAAAAAAAAGCAGAATAAACATAAACAAAAATTCGGATCAACAACGATATTAGCTCCAA-TTTAGTTTAATTTTACGGTGGA-AAGCAAA------------------CGATAATTTATAAGTCTTTGTTTTTGTTTTAT----TTCGCCGC-CTTTT---------TCG-------------TTGT-----T-TTTT-GTTA--TTTTTGCGGCGCGTCSizeHit CountTotal NormTotal
No Reads
droBia1
T---TTTTCGAACGCAGACGAACTCGC-----GGATA--AA----------TTGTAATTTTGTGGTTCGAGAATTCGACGCCGAGGCCCAGCCGTCGT--CGGTGGCTTTGTTA------------------------------------AATTCCATTAAC-------TAAATTCCAT-TTTAGTTTAATTTCACGCCGAA-AGGCAAA------------------AGATAATTTCGA----------------TTTT----TTCGCCGC-CTTTT---------TCG-------------TTG------T-TTTT-GTTG--TTTTTGCGGCGCGTCSizeHit CountTotal NormTotal
No Reads
droTak1
T---T-C--GAACGCAGACGAAATCGC-----GGATAAAAATATAACTTTGTTGGGAATTGTTCAGT----AATTCGACGCCGAGGGCAGAACATCGTC--GGTTTCTTCGCCA------------------------------------AATTCCAATAA-------TTTATTTCAACTTTTAGTTTAATTTACCGGTGAAAAAGCAAA------------------ATATAA--------ATTTTGCCTTCT--TTTT----TTCACCGC-CTTTT---------TCG-------------TTG------T-TTTT-GTTG--TTTTTGCGGCGCGTCSizeHit CountTotal NormTotal
No Reads
droEle1
G----------------------------------------------------------------------AAAACAA-----------------AGTCGCGGTCCCTCCGCAAAAAGCAA--AAAAAAAAACAGTAAACAAAAACAAACACTCGGATCAACAACGATATTAGTTCCAA-TTTAGTTTTATTTCGCAGTGAA-AAGCAAA------------------ATATAA----CAAAACTTTGCTTTTG--TTTT----TTCGCCGC-TTTTT---------TCGTAGTT---------TTTTGTTGTTTTTC-GTTA--TTTTTGCGGCGCGTCSizeHit CountTotal NormTotal
No Reads
droRho1
G--------------------------------------------------------------------GAAAAACAC---------------GTCGTCGCGGTCGCTTCGCAAAA-GAA-------AAACACAATAAACATAAACAAAAACTCGGATCATCAACGATATTAGTTCCAA-TTTAGT-TAATTTCACGGTGAA-AAGCCAA------------------ATATTATTATAAAAGATTTGGTTTTG--TTTT----ATCGCCGC-TCTTT---------TCG-------------TTGT-----T-TTTT-GTTG--TTTTAGCGGCGCGTCSizeHit CountTotal NormTotal
No Reads
droFic1
G---TG--------------------------------------------------------------GTGAAAAAAA-----------------CGTCGACGCCATCGCGAA-GA-GAA-------CAACACAAAAAACATAAA--CAAATTCGGATCAACGACGATATTAGTTTCAA-TTTAGTTTAATTTCACGGTGAA-GAGGAAA------------------AGATAATTTAAAAACCTCTGTTTTTGT-TTCA----TTCGCCGC-CTTTT---------TCG-------------TTG------T-TTTT-GTTG--TTTTTGCGGCGCGTCSizeHit CountTotal NormTotal
No Reads
droKik1
A---AT---------------------------------------------------------------------------------------------------------------------------------------------------------------GACATTAGTTCCGA-TTCAGTTAAATTTCTCGAAGAT-TTCCCGA------------------ACTTTGTGTT---AATTTTGTTTTCG--TTGTTGTATTCGCCGC-CTTTT---------TTGCCGTT---------CCGTCTTGT-TTTT-GTTG--CTATTGCGGAGCGTCSizeHit CountTotal NormTotal
No Reads
droAna3
GAATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTACG--------------------------------------------------GCATACGT-TTTT----TTTGCCGCTATTTT---------TCA-CCTTTCGTTTCGTA-------T-TTTT-GTTG--TTTTTGCGACGCGACSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
T---T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC----TTCGCCGC-TATTT---------TCACCTT---------TCGTTTCTAT-TTTT-GTTG--TTTTTGCGACGCGACSizeHit CountTotal NormTotal
No Reads
dp5
A---AT---------------------------------------------------------------------------------------------------------------------------------------------------------------ATTATTAGTTTGAA-TTAAAGTTAATTTCACGGCTCA-AAACAAATTTCTAGCCAACGGCAAAAATTA---------GACGCGGCTTTG--TTTT----TTTAAAGT-TTTTTCCGCATTTTGCG-------------TT-------T-TTGT-TTTG--TTTTAGCGGCGCGTCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................................................................................................................................................TAAAGTTAATTTCACGGCTCA-AAAC.....................................................................................................................................2511.0010010000000
........................................................................................................................................................................................AGTTAATTTCACGGCTCA-AAACA....................................................................................................................................2311.0010100000000
droPer2
A---AA---------------------------------------------------------------------------------------------------------------------------------------------------------------ATTATTAGTTTGAA-TTAAAGTTAATTTCACGGCTCA-AAACAAATTTCTAGCCAACGGCAAAAATTA---------GACGCGGCTTTG--TTTT----TTTTAAGT-TTTTTCCGCATTTTGCG-------------TT-------T-TTGT-TTTG--TTTTAGCGGCGCGTCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................................................................................................................................................................................................................GACGCGGCTTTG--TTTT----TTTTAAGT-...................................................................2411.001010000
droVir3
T---ATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTCG-CTTC-ATT----ATCTGTTGCGCGTCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
T---A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAT-TGCC-GTTGT-GTGTTTCAACACATASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.....................................................................................................................................................................................................................................................................................................................TTAT-TGCC-GTTGT-GTGTTTCA.......2111.001000001

Generated: 05/18/2015 at 11:39 PM