ID:

dsi_13616

 Coordinate:

3r:25739629-25739901 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-22.1 -22.1 -22.0

Flybase annnotation

exon [3r_25739902_25739958_-]; CDS [3r_25739902_25739958_-]; exon [3r_25739484_25739628_-]; CDS [3r_25739484_25739628_-]; intron [3r_25739629_25739901_-]

Repeatable elements

NameClassFamilyStrand
(GTGTG)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AGCAATTTATTAGGAAATTCAGTTGAAATGTGCTTACCAGCGACGCCTAGGTTCGTATTTTTACCTATTGTTTAATTTCAGTTATATTATATTCTTTAACCGACTGTCATTTGTATCTTTCCCCGCCCATGCCACTCCACCAACTCCCAACCCACCCTCACGATTCTTTTCTTTTTTGGTTTCGATTACGATTCGACCAAACAATGCAATGCACCACCACCTCGACAAAAACCAAACCACAATGTACCACAATGTACCACAATGCACCACACTGCACCACACGAACTGCAAACCACGTGATACTGCCCCACACTAACCACTAGAAACTCTACTCCACAACACGCCCCAACCAGCAGCGCCCGCCAGCGAACCA
**************************************************((((((......................(((((...(((.......)))..))))).((((.((((........((....))..........................................((((((((((....)))...)))))))..))))))))................................((((......)))).....((((......))))....))))))..........(((.........)))............************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M025
embryo
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
.................................................................................................................................................................................................................................................................................................................................................AACACGCCCCAACCAGCAGCGCCCGCC......... 27 0 1 1.00 1 0 0 0 1 0 0
.........TTAGGAAATTCAGTTG............................................................................................................................................................................................................................................................................................................................................................ 16 0 1 1.00 1 0 1 0 0 0 0
............................................................TTACCTATTGTTTAATTTCAGTTA................................................................................................................................................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................CTAGAAACTCTACTCCACAACACGC............................. 25 0 1 1.00 1 0 0 1 0 0 0
................................................................................................TAACGGACTGTCATTTTTAACTT.............................................................................................................................................................................................................................................................. 23 3 1 1.00 1 1 0 0 0 0 0
.........TGAGGAAATTCAGTTGAAATATGA.................................................................................................................................................................................................................................................................................................................................................... 24 3 2 0.50 1 0 1 0 0 0 0
......................................................................................................................................................CCCACCCTCACCATT................................................................................................................................................................................................................ 15 1 3 0.33 1 0 0 0 0 1 0
.........TGAGGAAATTCAGTTGAAATT....................................................................................................................................................................................................................................................................................................................................................... 21 2 4 0.25 1 0 1 0 0 0 0
...................................................................................................................TCTTTCACCGCCCGTGTCA............................................................................................................................................................................................................................................... 19 3 16 0.06 1 0 0 0 0 0 1
....................................................................................................................................................AACCCCCCCTCACTATT................................................................................................................................................................................................................ 17 2 18 0.06 1 0 0 0 0 1 0
..........................................................................ATTCCAGTTGTATTATAATC....................................................................................................................................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 1
...................................................................................................................................................................................................................TAGCACCACCTTGACAAAA............................................................................................................................................... 19 3 20 0.05 1 0 1 0 0 0 0

Anti-sense strand reads

TCGTTAAATAATCCTTTAAGTCAACTTTACACGAATGGTCGCTGCGGATCCAAGCATAAAAATGGATAACAAATTAAAGTCAATATAATATAAGAAATTGGCTGACAGTAAACATAGAAAGGGGCGGGTACGGTGAGGTGGTTGAGGGTTGGGTGGGAGTGCTAAGAAAAGAAAAAACCAAAGCTAATGCTAAGCTGGTTTGTTACGTTACGTGGTGGTGGAGCTGTTTTTGGTTTGGTGTTACATGGTGTTACATGGTGTTACGTGGTGTGACGTGGTGTGCTTGACGTTTGGTGCACTATGACGGGGTGTGATTGGTGATCTTTGAGATGAGGTGTTGTGCGGGGTTGGTCGTCGCGGGCGGTCGCTTGGT
**************************************************((((((......................(((((...(((.......)))..))))).((((.((((........((....))..........................................((((((((((....)))...)))))))..))))))))................................((((......)))).....((((......))))....))))))..........(((.........)))............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR618934
dsim w501 ovaries
 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 M053
female body
 SRR902008
ovaries
.......................................................................................................................................................................................................................................................CTGTTACCTGATGTTACGTG.......................................................................................................... 20 3 13 18.00 234 147 9 27 7 23 7 5 1 3 5 0
........................................................................................................................................................................................................................................................TGTTACCTGATGTTACGTG.......................................................................................................... 19 2 4 3.75 15 7 3 1 0 1 2 0 0 0 0 1
.........................................................................................................................................................................................................................................................GTTACCTGATGTTACGTG.......................................................................................................... 18 2 8 3.63 29 20 0 8 0 1 0 0 0 0 0 0
....................................................................................................................................................TTGGGTGGGAGTGCTGAGAAA............................................................................................................................................................................................................ 21 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
.....................................................................................................................AAAGGCGCGGGTACGGTGACGT.......................................................................................................................................................................................................................................... 22 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................AAAAGGCGCGGGTACGGTGACGT.......................................................................................................................................................................................................................................... 23 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................ACGGTGAGATGGTTGA.................................................................................................................................................................................................................................... 16 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
...................................TGGTCCCTGCGGATCC.................................................................................................................................................................................................................................................................................................................................. 16 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...................................TGGCCCCTGCGGATCC.................................................................................................................................................................................................................................................................................................................................. 16 2 8 0.75 6 0 4 0 0 0 0 0 0 2 0 0
...................................TGGCCCCTGCGGATCCA................................................................................................................................................................................................................................................................................................................................. 17 2 3 0.67 2 0 2 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................CGGTCTTGTGCGGGGTTG....................... 18 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................CGGTGAGATGGTTGA.................................................................................................................................................................................................................................... 15 1 5 0.40 2 0 0 0 0 0 0 2 0 0 0 0
........................................................................................................................................................................................TACTGCTCAGCTGGTTTGT.......................................................................................................................................................................... 19 2 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0
......................................................................................................................AAGGCGCGGGTACGGTGACGT.......................................................................................................................................................................................................................................... 21 2 6 0.33 2 0 1 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................GATTGGTGATCTGTGCGA........................................... 18 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................AAGAAATTGTCTGACA.......................................................................................................................................................................................................................................................................... 16 1 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................CAGGTGTTGTTCGGGGTCGGT..................... 21 3 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0
............................................................................................................................................................................................................................................................................TGTGACGTGGTGAGCTAGAGGT................................................................................... 22 3 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................TGAGACGAGGTGTTGT................................ 16 1 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................ACGGTGAGATGGTTGAC................................................................................................................................................................................................................................... 17 2 20 0.20 4 0 0 0 0 0 2 2 0 0 0 0
.........................................................................................................................................................................................................................................................GTTACGTGATGTTACGTG.......................................................................................................... 18 2 14 0.14 2 1 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................GTTACGTGATGTTACGTG................................................................................................ 18 2 14 0.14 2 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................CTGTGAGATGAGGTGT................................... 16 1 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................GGTGAGGGTTGGGTGG......................................................................................................................................................................................................................... 16 1 15 0.13 2 0 0 0 2 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................CTGTTACTTGATGTTACGTG.......................................................................................................... 20 3 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................GGGGTAGGATTGGTGATCTG................................................ 20 3 8 0.13 1 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................AAGGCTCGGGTACGGTGACGT.......................................................................................................................................................................................................................................... 21 3 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................................TTTTGCGGGGTTGGTCTT.................. 18 2 10 0.10 1 0 0 0 0 0 0 0 1 0 0 0
............................................................................................................................................................................................................................................................................................................................GGTGATCTTTGAGAGTA........................................ 17 2 11 0.09 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................CCAAAGCCCATGCTAAG................................................................................................................................................................................... 17 2 13 0.08 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................TGGATAACAAATTGA........................................................................................................................................................................................................................................................................................................ 15 1 16 0.06 1 0 0 0 0 0 0 0 0 1 0 0
.......................................................................................................................................................................................................................................................................................................................TGATTGGTGGTCTGTGACA........................................... 19 3 17 0.06 1 0 0 0 1 0 0 0 0 0 0 0
....................................GGCCCCTGCGGATCCA................................................................................................................................................................................................................................................................................................................................. 16 2 17 0.06 1 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................CTGTGAGATGAGGTG.................................... 15 1 18 0.06 1 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................TGGTATGCTTGACGT................................................................................... 15 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
..........ATCCTTTATGTCAACTA.......................................................................................................................................................................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
...............................................................................................................ACGTAGAAAGGGGCGATTA................................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
....................................GGCCCCTGCGGATCC.................................................................................................................................................................................................................................................................................................................................. 15 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
...................................TGGTCGCTGCGGTTACAAC............................................................................................................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................ACGGTACGTGGTGGTGG........................................................................................................................................................ 17 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:25739579-25739951 - dsi_13616 AGCAATTTATTAGGAAATT---CAGTTGAAATGTGCTTACCAGCGACGCCTAGGTTCGTATTTTT---ACC------------TATTGTTTA-------------------------------ATTTCAGTTATA-TT---------------A-------TAT-TCTTTAACCG------ACTGTCATTTG--------TATCTTT-CCC---CG---------------------------------------------------------CCCATGCCACTCCACC-AACT-CCCAACCC----A-----------------CC--C--TCACGATTCT-TTTCTTTTTTGGTTTC------GATTACG------ATT----CGACCAAAC-AATGCAATGCACC---------ACCACCT-----CGACAA-------AAACCAA---ACCACAA-TG-TACCACAA-------TGTACCACA--------------------A-------------------------------------------------------------------TGCACCACACTGCA--CCACACGAACTGC---------------AAAC--------------------------------------------------CACGTGATAC--TGCC-CCACACTAACCACT-----------AGAAACTCTACTCCACAACACGCCCCAAC---CAGCAGCGCCCGCCAGCGAACCA
droSec2 scaffold_4:5246452-5246809 - AGCAATTTATTAGGAAATT---CAGTTGAAATGTGCTTACCAGCGACGCCTAGGTTCGTATTTTT---ACC------------TATTGTTTA-------------------------------ATTTCAGTTTAA-TT---------------A-------TAT-TCTTTAACCG------ACTGTCATTTG--------TATCTTT-CCC---CG---------------------------------------------------------CCCATGCCACTCCACC-AACT-CCCAACCC----A-----------------CC--C--TCACGATTCT-TTTCTTTTTTGGTTTC------GATTACG------ATT----CGACCAAAC-AA-----TGCACC---------ACCACCT-----CGACAA-------AAACCAA---ACCACAA-TG-TACCAC-----------------A--------------------A-------------------------------------------------------------------TGCACCACACTGCA--CCACACGAACTGC---------------AAAC--------------------------------------------------CACGTGATAC--TGCC-CCACACTAACCACT-----------AGAAACTCTACTCCACAACACGCCCCAAC---CAGCAGCGCCCGCCAGCGAACCA
dm3 chr3R:26419522-26419884 - AGCAATTTATTAGGAAATT---CAGTTGAAATGTGCTTACCAGCGACGCCTAGGTTCGTATTTTA---AAC------------TATTGTTTA-------------------------------ATTTCAGTTTAA-TT---------------G-------TAT-TCTTTAACCG------ACTGTCATTTG--------TATCTTT-CCC---CA---------------------------------------------------------CCCATGCCACTCCACC-AACT-CCCAACCC----A-----------------CC--C--TCACGATTCT-TTTCTTTTTTGGTTTC------GATTACG------ATT----CGACCAAAC-AATGCAATGCACC---------ACCACCT-----CGACAA-------AAACCAA---CTCACAA-TG-TACCAC-----------------A--------------------A-------------------------------------------------------------------TGCACCACACTGCA--CCACACGAACTGC---------------AAAC--------------------------------------------------CACGTGATAC--TGCC-CCACACTAACCACT-----------AGAAACTCTACTCCACAACACGCCCCAAC---CAGCAGCGCCCGCCAGCGAACCA
droEre2 scaffold_4820:1582141-1582517 + AGCAATTTATTAGGAAATT---CAGTTGAAATGTGCTTACCAGCGACGCCTAGGTTCGTATTTTA---AAC------------TATATTTTA-------------------------------ATTTCAGTTTAA-TT---------------G-------TAT-ACTTTATCCG------ACTGACATTTG--------TATTTTT-CCC--CCA-----------------------------------CCCATGCCACCC----ATGCCACCCATGCCACTCCACC-AACT-C-----CC----A-----------------CC--C--TCATGATTCT-TTTCTTTTTTGGTTTC------GAATACG------ATT----CGACCAAAC-AATGCAATGCACC---------ACCACCT-----CGACAA-------AAACCAA---CCCACAA-TG-TACCAC-----------------A--------------------A-------------------------------------------------------------------TGCACCACATTGCA--CCACACGAACTGC---------------AAAC--------------------------------------------------CACGTGATAC--TGCC-CCACACTAACCACT-----------AGAAACTCTACTCCACAACACGCCCCAAC---CAGCAGCGCCCGCCAGCGAACCA
droYak3 3R:27339744-27340125 - AGCAATTTATTAGGAAATT---CAGTTGAAATGTGCTTACCAGCGACGCCTAGGTTCGTATTTTT---AAC------------TATTGTTTA-------------------------------ATTTCAGTTTAA-TT---------------A-------TAT-TCTTTAACCG------ACTGTCATTTG--------TATTTTT-CCC--CCA------------------------------------AA-------------------ACCATGCCACTCCACC-AACT-CCCAACCC----A-----------------CC--C--TCATGATTCT-TTTCTTTTTTGGTTTC------GAATACGAATGCGATT----CGACCAAAC-AATGCAATGCACC---------ACCACCT-----CGACAA-------AAACCAA---CCCACAA-TG-TACCACAA-------TGTACCACA--------------------A-------------------------------------------------------------------TGCACCACATTGCA--CCACACGAACTGC---------------AAAC--------------------------------------------------CACGTGATAC--TGCC-CCACACTAACCACT-----------AGAAACTCTACTCCACAACACGCCCCAAC---CAGCAGCGCCCGCCAGCGAACCA
droEug1 scf7180000409555:926076-926449 - AGCAATTTATTAGGAAATT---CAGTTGAAATGTGCTTACCAGCGACGCCTAGGTTCGTATTTTT---AAC------------TATTGTTTC-------------------------------ATTTCAGTTCAA-TT---------------A-------TAA-TTTTTAATCA------ACTGCCATTTG--------TACTTTT-CCC---CA-----------------------------------CCCA-------------------CCACGACACACCACC-AACC-CCCGACCC----A-----------------CC--C--ACACGATTTC-TTTCTTTTTTGGTTAC------GATTACG------ATC----CGACCATCC-AATGAAACGCACCACAACCACCACCACCT-----CGACAA--------AACCAA---TCCACAA-TG-TACCAC-----------------A--------------------A-------------------------------------------------------------------TGCACCACATTGCA--CCACTCGAACTGC---------------AAAC--------------------------------------------------CTCGTGAAAC--TGCC-GCACACTAACCACT-----------AGAAACTCTACTCCACAACACGCCCCATC---CAGCAGCAACCGCCAGAGAACCA
droBia1 scf7180000302113:941127-941515 + AGCAATTTATTAGGAAATT---CAGTTGAAATGTGCTTACCAGCGACGCCTAGGTTCGTATTTTT---AAC------------TATGGTTTC-------------------------------CATTCAGTTAAG-TT---------------A-------TAA-TTTTTAATCA------ACTGCCATTTG--------TACTTTT-CCC---CAC--------------------CTCCCACACCCACAC---------CC----ACG------CCGCCACTCCACC-CACTTCCCCACCC----G-----------------CC--C--ACATGATTCT-TTTCTTTTTTGGTTTC------GATTACG------ATC----CGACCAACC-AATGAAACGCACC---------GCCACCT-----CGACAAAACGACAAAACCAA---CCCACAA-TG-TACCAC-----------------A--------------------A-------------------------------------------------------------------TGCACCACATTGCA--CCACTCGAACCGC---------------AAAC--------------------------------------------------CACGTGAAAC--TGCC-CCACACTAACCACT-----------AGAAACTCTACTCCACAACACGCCCCATC---CAGCAGCACCCGCCAGCGGACCA
droTak1 scf7180000415367:378353-378731 + AGCAATTTATTAGGAAATT---CAGTTGAAATGTGCTTACCAGCGACGCCTAGGTTCGTATTTTT---AAC------------TATTGTTTC-------------------------------ATTTCAGTTTAA-TT---------------A-------TAA-TTTTTAATCA------ACTGCCATTTG--------TACTTTTTC-C--CCA-----------------------------------CCCAC-CCAACC----ACG------CCGCCACTCCACC-AACT-TCCAACTTC---CCCAAA-ATCCACCACCACCCAC--ACATGATTCT-TTTCTTTTTACGATCC------GATC----------------TGAACTA-A-T-----CTGCACA---AC---CACCACAT-----CGACAA--------AACCAA---ACCACAA-TG-TACCAC-----------------A--------------------A---------A---------------------------------------------------------TGCACCACATTGCA--CCAATC------C---------------GAAC--------------------------------------------------CGCGTGAAAC--TGCC-GCACACTAACCACT-----------AGAAACTCTACTCCACAACACGCCCCAAC---CAGCAGTAACCGCCAGCGGACCA
droEle1 scf7180000491280:2747648-2748057 - AGCAATTTATTAGGAAATT---CAGTTGAAATGTGCTTACCAGCGGCACCTAGGTTCGTATTTTT---AAC------------TATTGTTTA-------------------------------ATTTTAGTTAAA-TT---------------A-------TAATTTTTTAATCA------ACTGCCATTTG--------TACTTTTT-TTCCCCA-----------------------------------ACAA------CC----ACG-------CGCCACTCCACCAAATTTCCCCACCC----A-----------------CC--C--ACATGATTCT-TTTCTTTTTTGGTTTC------GATAACG------ATT----CGACC-----AATGAAATGCACC---------ACCACTT-----CTACAA-------AAACCAA---CCCACAA-TG-TACCACAA-------TGTACCACAATGTACCACAATGTACCACAATGCACCACAT---------------------------------------------------------TGCACCACATTGCA--CCACTCGAATCAC---------------AATC--------------------------------------------------CTCGTGAAAC--TGCC-GCACACTAACCACT-----------AGAAACTCTACTCCACAACACGCCCCAAC---CAGCAGCACCCGGCAGCGAACCA
droRho1 scf7180000778339:12730-13099 + AGCAATTTATTAGGAAATT---CAGTTGAAATGTGCTTACCAGCGGCGCCTAGGTTCGTATTTTT---AAC------------TATTGTTTC-------------------------------ATTTCATTTAAT-TT---------------A-------TAA-TTTTTAATCA------ATTGACATTTG--------TACTTTT-TTC---CA-----------------------------------CCAA------------------CCCACGCCACTCCACA-AATACCCCAACCC----A-----------------CC--C--ACATGATTCT-TTTCTTTTTTGGTTTC------GATAACG------GTT----CGACCAACC-AATGAAATACACC---------ACCA-------------A-------AAACCAA---CCCACAA-TG-TACCACAA-------TGTACCACA--------------------A-------------------------------------------------------------------TGCACCACATTGCA--CCACTCGAACCAC---------------AAAC--------------------------------------------------CTCGTGAAAC--TTCC-GCACACTAACCACT-----------AGAAACTCTACTCCACAACACGCCCCAAC---CAGCAGCAACCGGCAGCGAACCA
droFic1 scf7180000454106:52035-52398 + AGCAATTTATTAGGAAATT---CAGTTGAAATGTGCTTACCAGCGGCGCCTAGGTTCGTATTTTT---AAC------------TATTGTTTC-------------------------------ATTTCAGTTTAA-TT---------------A-------TA--TTTTTAATCA------ACCGCCATTTG--------TACTTTT-CCC--CCA-----------------------------------CCA-------------------ACCACGCCACTCCACC-AACT-CCCCACCC----A-----------------CC--C--ACATGATTCT-CTTCTTTTCTGGTTTC------GATTACG------ATC----CGACCATCC-AACG-AATGCACC---------ACCACCT-----CGACCA-------AAACCAA---CCCACAA-TG-TACCAC-----------------A--------------------A-------------------------------------------------------------------CGTACCACATTGCA--CCTCTCGAACTGC---------------G-AC--------------------------------------------------CACGTGAAAC--TGCC-GCACACTAACCACT-----------AGAAACTCTACTCCACAACACGCCCCATC---CAGCAGCAACCGCCAGCGGACCA
droKik1 scf7180000302390:388115-388458 - AGCAATTTATTAGGAAATT---CAGTTGAAATGTGCTTACCAGCGATGCCTAGGTTCGTATTTTTTTAAAC------------TATTGTTTCA------------------------------ATTTCAGTTAAATTT---------------A-------TGA-TTTTTAATCGAA----AATGCCATTTG--------TACTTTTTC-C--CC-CCGC----------CAC----CT--------------------------------------------CCCACA-AAC---CCCACCC----A-----------------CC--C--ACACGATTCT-TCTCTTTTTTGGTTTAC-----GATTACA------ATC----CGAA---ATATACGAAATGCACC---------AACACCT-------------------------------------------------------------------------------------------------------------------------------------------------------TGCACCACATTGCACACCACTCGAACCAC---------------GATC--------------------------------------------------CATGTGAAACTCTGCTGCCACACTAACCACT-----------AGAAACTCTACTCCACAACACGCCCCGATCAGCAGCAGCAACAGGCAGCGCACCA
droAna3 scaffold_12911:4562867-4563229 + AGCAATTTATTAGGAAATT---CAGTTGAAATGTGCTTACCAGCGACGCCTAGGTTCGTATTTTT---ACC------------TATTGTTTC-------------------------------ATTTCAGTTAAA-TT---------------A-------TGA-TTTTTAATCA------ATTGCCATTTG--------TACTTTTTC-C--CCACCGCTCACCAAATCCACCCAC------------------------CCCCAAAAACCACTCACTCCACTCCAC--------------C----A-----------------CC--C--ACATGATTCT-TTTCTTTTTTGGTTTC------GATTACG------ATC-CAATGACCA-----------------------------ACCT-----CGACAA--------AACCAACAACACT------------C-----------------A--------------------A-------------------------------------------------------------------TGCACCACATTGCA--CCACTCGAAATAC-------------CTAAAC--------------------------------------------------CGCGTGAAAC--TGAC-GCACACTAACCACT-----------AGAAACTCTACTCCACAACACGCCCCATC---CAGCAGCAGCCGGACGCGCACCA
droBip1 scf7180000396640:1405706-1406077 + AGCAATTTATTAGGAAATT---CAGTTGAAATGTGCTTACCAGCGACGCCTAGGTTCGTATTT-T---ACC------------TATTGTTTC-------------------------------ATTTCAGTTAAA-TT---------------A-------TGA-T-TTTAATCA------ATTGCCATTTG--------TACTTTTTC-C--CCACCGT------AATCCAC-CAC------------------------CCCAAAATACCACTCACTCCACTCCACC-------------C----ACCCAACAACCACCCACACC-AC--ACATGATTCT-TTTCTT-TTTGGTTTC------GATCTCG------ATC----C---------AA-----TGAA------------CAACCT-----CGACAA--------AACCAACAACACT------------C-----------------A--------------------A-------------------------------------------------------------------TGCACCACATTGCA--CCACTTGACACAC-------------TTGAAC--------------------------------------------------CGCGTGAATC--TGAC-GCACACTAACCACT-----------AGAAACTCTACTCCACAACACGCCCCATC---CAGCAGCAACCGGACGCGCACCA
dp5 2:820094-820401 + AGCAATTTATTAGGAAATT---CAGTTGAAATGTGCTTTCCAGCGGCGCCTAGGTTCGTATTATTTT-ATT------------TATT---TG------------------------ATTATTCATTCGAATTAAT-TT---------------A-------TGA-TTTCTAATCG------ATNNCCACTCAACCCCCCACCCTTTCTC-C--CCA------------------------------------------------------------------CTCC-CC-AACC------CCC----G-----------------CC--C--ACACGGTTCTGTTTCTTTTTTGGTTACCAACAC----ACG------A----------------------------------------------------------------------CACCACA------------C-----------------A-------------------------------------------------------------------------------------------------CTGCA--CCACA----------ATCGAC---CCTCGGACC-------------------------------------------------CTCG-----------------ACCAACCACTCTAATCCGTAAAGAAACTCTACTCCACAACACGCACCCATTAGCAGCAGCAGCCGACAGCGCACCA
droPer2 scaffold_2942:101-409 + AGCAATTTATTAGGAAATT---CAGTTGAAATGTGCTGTCGAGCGGCGTCTACGTGCGTATTTTTTT-ATT---------------TATTTG------------------------ATTATTCACTCGAATTAAT-TT---------------A-------TGA-TCTCTACTCG------ATTGCCACTCAACCCCCCATCCTTTCTC-C--CCA------------------------------------------------------------------CTCC-CC-AACC-TC----CG----T-----------------CC--G--ACACTGTTCTGTTTCTTTTTTGGTTACCTACAC----ACG------A----------------------------------------------------------------------CACCACA------------C-----------------A-------------------------------------------------------------------------------------------------CTGCA--CCACA----------ATCGAC---CCTCGGACC-------------------------------------------------CTCG-----------------ACCAACCACTCTAATCCGTAAAGAAACTCTACTCCACAACACGCACCCATCAGCAGCAGCAGCCGACAGCGCACCA
droWil2 scf2_1100000004943:9926584-9927008 - AGCAATTTATTAGGAAATT---CTGTTGAAATGTGCTTACCAACGACACCTAGGTTTGTATTGAT---ATA------------TATACAT----------------ATATATATTA-------AGAGTAC----T-TCTCAATTGGTATTTATATTTTGTTT-A-TATTTAATTA------AATG-CATTTA--------TCTTTTT-TCA--TTT----------------------------------------------------------TCTT-TCCCTTTAT--------------CC---CCCAAA-AAAAAAAAAAAAAAATATATACGTT--T-ATCTTTTTTTGGTTAC------GAATGCG------A---------C------AACAAAATACTCA---AC---CACAACAACCACTCAAC----------------------------------------------------------------------------------------------------------------------------------------------TACACC--ACTGCA--CTCCACACATTGCC-ATCGATAACGTCTGCACCGTGCACTATGCAAAAAAATATTAAATAATAATAAATCAAAACAAATAAACCTGTCATACTTTG-T-CCACACTAACCACA-----------AGAAACTCTACTCCACAACATGCCCC------TAGCAGTAGCCGTACGCGCACTA
droVir3 scaffold_13047:11188301-11188685 - dvi_16460 TGCAATATATTAGGAAATT---CTGTTGAAATGTGCATACCATCGGCGTCTAGGTTTGTATTTTA---AATAC-------AAAT-ATGTAAC-------------------------------A---CTGTTAAT-TT---------------GTT-----TAG-TTTATACTGA------AACGCGAATTG--------TATATGT-AC-----------------------------------------------------------------------------------------------------------------------------TGTCATT-TTTCTTTTTTGGTTTC------AATATCG------ACAACTACGAC-----------AACGCACT---------ACCACAT--CCACAACAA-------CAAC-AACA-ACAACAATTGCTACTACAACAACAATTGC---------TA-------CTACAACAACGCACCACACCACAAAACATCTGCACACGCC--------------------ATCCAC---ACACAAC-----TACTCTGCA--CAAT--AAAATGCCA------------AAAAA--------------------------------------------------AATGTCAAA---TGTG-CCACACTATTAACC-----------AGAAACTCTACTCCACAACATGCAC---C---CAGTAGTAGCCGCCAGCGCACCA
droMoj3 scaffold_6540:30566881-30567260 + AGCGATATTTTAGGAAATT---CTGTTGAAATGTGCATGCCAGCGGCGTCTAGGTTTGTATTTTA---TATACAAAATATAAATATGTGTACATTTGCATATATGTATATG-CTCG-------ATATT-CTTGAC-TT---------------GTG-----TG------------------------AATTG--------TTTATGT-ATT---------------------------------------------------------------------------------------------GTCA-----------------TT--T--TTATTATTC--TTTATTTTTTGGTTAC------TACAACG------AAC----C-----------------ACACC---------AATACCT-----CAACAA-------CAAC-AACA----------------AC-----------------A--------------------ACGCACTACACTACA-TACATTTGCACATGTCAATTCGACACCACCAACACCACCCACACCACACAAC-----CACTCTGCA--C---ATTAAATGCTC--------------A-A--------------------------------------------------TATGCC-AAC--TACG-CGACACTAATCACA-----------AGAAACTCTACTCCGCAACATGCAC---C---CAGTAGCAGCCGTCAGCGCACCA
droGri2 scaffold_14624:1096849-1097168 - TGCAATATATTAGGAAATTCTTCTGTTGAAATGTGCATACCGACGGCGTCTAGGTTTGTATCTACCTAAAC-------ATAAATACATATAC---TATATATATATATATAATTTG-------ACATTAT----T-TT---------------GTG-----TGT-TTTATTTTCGAATATAATTGCGAACTG--------TATATGT-GCT---------------------------------------------------------------------------------------------ATC-----------------------------ATTTTC-TTTATTTTTTGGTTAC------GATT----------------TGAACAA-C-TCTGCAA---------------------------------------------------------------------------------------------------------CTGCACCACA----------------------------------------------------------CACATCAATATGCA--CCACATCAAATGC---------------CAAT--------------------------------------------------TG---CAAAC---GCTTACACACTAATCACA---------ATAGAAACTCTACTCCACAACATGCACCCAT---TAGC---AGTCGGCAGCGCACTA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AGCAATTTATTAGGAAATT---CAGTTGAAATGTGCTTACCAGCGACGCCTAGGTTCGTATTTTT---ACC------------TATTGTTTA-------------------------------ATTTCAGTTATA-TT---------------A-------TAT-TCTTTAACCG------ACTGTCATTTG--------TATCTTT-CCC---CG---------------------------------------------------------CCCATGCCACTCCACC-AACT-CCCAACCC----A-----------------CC--C--TCACGATTCT-TTTCTTTTTTGGTTTC------GATTACG------ATT----CGACCAAAC-AATGCAATGCACC---------ACCACCT-----CGACAA-------AAACCAA---ACCACAA-TG-TACCACAA-------TGTACCACA--------------------A-------------------------------------------------------------------TGCACCACACTGCA--CCACACGAACTGC---------------AAAC--------------------------------------------------CACGTGATAC--TGCC-CCACACTAACCACT-----------AGAAACTCTACTCCACAACACGCCCCAAC---CAGCAGCGCCCGCCAGCGAACCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACACGCCCCAAC---CAGCAGCGCCCGCC.........2711.00100000000000010000
.........TTAGGAAATT---CAGTTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1611.00100000000001000000
...............................................................TT---ACC------------TATTGTTTA-------------------------------ATTTCAGTTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT-----------AGAAACTCTACTCCACAACACGC................................2511.00100100000000000000
droSec2
AGCAATTTATTAGGAAATT---CAGTTGAAATGTGCTTACCAGCGACGCCTAGGTTCGTATTTTT---ACC------------TATTGTTTA-------------------------------ATTTCAGTTTAA-TT---------------A-------TAT-TCTTTAACCG------ACTGTCATTTG--------TATCTTT-CCC---CG---------------------------------------------------------CCCATGCCACTCCACC-AACT-CCCAACCC----A-----------------CC--C--TCACGATTCT-TTTCTTTTTTGGTTTC------GATTACG------ATT----CGACCAAAC-AA-----TGCACC---------ACCACCT-----CGACAA-------AAACCAA---ACCACAA-TG-TACCAC-----------------A--------------------A-------------------------------------------------------------------TGCACCACACTGCA--CCACACGAACTGC---------------AAAC--------------------------------------------------CACGTGATAC--TGCC-CCACACTAACCACT-----------AGAAACTCTACTCCACAACACGCCCCAAC---CAGCAGCGCCCGCCAGCGAACCASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCCCAAC---CAGCAGCGCCCGC..........2211.0010100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACAACACGCCCCAAC---CAGCAGCGCCC............2811.0010010
dm3
AGCAATTTATTAGGAAATT---CAGTTGAAATGTGCTTACCAGCGACGCCTAGGTTCGTATTTTA---AAC------------TATTGTTTA-------------------------------ATTTCAGTTTAA-TT---------------G-------TAT-TCTTTAACCG------ACTGTCATTTG--------TATCTTT-CCC---CA---------------------------------------------------------CCCATGCCACTCCACC-AACT-CCCAACCC----A-----------------CC--C--TCACGATTCT-TTTCTTTTTTGGTTTC------GATTACG------ATT----CGACCAAAC-AATGCAATGCACC---------ACCACCT-----CGACAA-------AAACCAA---CTCACAA-TG-TACCAC-----------------A--------------------A-------------------------------------------------------------------TGCACCACACTGCA--CCACACGAACTGC---------------AAAC--------------------------------------------------CACGTGATAC--TGCC-CCACACTAACCACT-----------AGAAACTCTACTCCACAACACGCCCCAAC---CAGCAGCGCCCGCCAGCGAACCASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACACGCCCCAAC---CAGCAGCGCC.............2314.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................TTAACCG------ACTGTCATTTG--------TATC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--CCACACGAACTGC---------------AAAC--------------------------------------------------.................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................CGACCAAAC-AATGCAATG..............................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTACTCCACAACACGCCCCAAC---CAGC...................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCCCCAAC---CAGCAGCGCCCG...........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.......TATTAGGAAATT---CAGTTGAAATGTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................GCTTACCAGCGACGCCTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................AA-TT---------------G-------TAT-TCTTTAACCG------ACTGTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCTACTCCACAACACGCCCC.............................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................TTTTGGTTTC------GATTACG------ATT----CGAC.............................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACACGCCCCAAC---CAGCAGCGCCCGC..........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCTACTCCACAACACGCC...............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCCCAAC---CAGCAGCGCCCGC..........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................TACG------ATT----CGACCAAAC-AATGCAATGCAC...........................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......TATTAGGAAATT---CAGTTGAAATGTGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.....................................TACCAGCGACGCCTAGGTTCGTAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTCCACAACACGCCCC.............................1911.0010000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCACAACACGCCCCAAC---CAGCAGCG...............2611.0010000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCACACTGCA--CCACACGAACTGC---------------.......................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTCCACAACACGCCCCAAC---CAGCAGC................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................GCACC---------ACCACCT-----CGACAT-------C.......................................................................................................................................................................................................................................................................................................................................19170.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AGCAATTTATTAGGAAATT---CAGTTGAAATGTGCTTACCAGCGACGCCTAGGTTCGTATTTTA---AAC------------TATATTTTA-------------------------------ATTTCAGTTTAA-TT---------------G-------TAT-ACTTTATCCG------ACTGACATTTG--------TATTTTT-CCC--CCA-----------------------------------CCCATGCCACCC----ATGCCACCCATGCCACTCCACC-AACT-C-----CC----A-----------------CC--C--TCATGATTCT-TTTCTTTTTTGGTTTC------GAATACG------ATT----CGACCAAAC-AATGCAATGCACC---------ACCACCT-----CGACAA-------AAACCAA---CCCACAA-TG-TACCAC-----------------A--------------------A-------------------------------------------------------------------TGCACCACATTGCA--CCACACGAACTGC---------------AAAC--------------------------------------------------CACGTGATAC--TGCC-CCACACTAACCACT-----------AGAAACTCTACTCCACAACACGCCCCAAC---CAGCAGCGCCCGCCAGCGAACCASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCACAACACGCCCCAAC---CAGCAG.................2411.0010000010
droYak3
AGCAATTTATTAGGAAATT---CAGTTGAAATGTGCTTACCAGCGACGCCTAGGTTCGTATTTTT---AAC------------TATTGTTTA-------------------------------ATTTCAGTTTAA-TT---------------A-------TAT-TCTTTAACCG------ACTGTCATTTG--------TATTTTT-CCC--CCA------------------------------------AA-------------------ACCATGCCACTCCACC-AACT-CCCAACCC----A-----------------CC--C--TCATGATTCT-TTTCTTTTTTGGTTTC------GAATACGAATGCGATT----CGACCAAAC-AATGCAATGCACC---------ACCACCT-----CGACAA-------AAACCAA---CCCACAA-TG-TACCACAA-------TGTACCACA--------------------A-------------------------------------------------------------------TGCACCACATTGCA--CCACACGAACTGC---------------AAAC--------------------------------------------------CACGTGATAC--TGCC-CCACACTAACCACT-----------AGAAACTCTACTCCACAACACGCCCCAAC---CAGCAGCGCCCGCCAGCGAACCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACACGCCCCAAC---CAGCAGCGCCC............2511.00100000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCCAAC---CAGCAGCGCCCGCCA........2311.00101000000000
droEug1
AGCAATTTATTAGGAAATT---CAGTTGAAATGTGCTTACCAGCGACGCCTAGGTTCGTATTTTT---AAC------------TATTGTTTC-------------------------------ATTTCAGTTCAA-TT---------------A-------TAA-TTTTTAATCA------ACTGCCATTTG--------TACTTTT-CCC---CA-----------------------------------CCCA-------------------CCACGACACACCACC-AACC-CCCGACCC----A-----------------CC--C--ACACGATTTC-TTTCTTTTTTGGTTAC------GATTACG------ATC----CGACCATCC-AATGAAACGCACCACAACCACCACCACCT-----CGACAA--------AACCAA---TCCACAA-TG-TACCAC-----------------A--------------------A-------------------------------------------------------------------TGCACCACATTGCA--CCACTCGAACTGC---------------AAAC--------------------------------------------------CTCGTGAAAC--TGCC-GCACACTAACCACT-----------AGAAACTCTACTCCACAACACGCCCCATC---CAGCAGCAACCGCCAGAGAACCASizeHit CountTotal NormTotal
No Reads
droBia1
AGCAATTTATTAGGAAATT---CAGTTGAAATGTGCTTACCAGCGACGCCTAGGTTCGTATTTTT---AAC------------TATGGTTTC-------------------------------CATTCAGTTAAG-TT---------------A-------TAA-TTTTTAATCA------ACTGCCATTTG--------TACTTTT-CCC---CAC--------------------CTCCCACACCCACAC---------CC----ACG------CCGCCACTCCACC-CACTTCCCCACCC----G-----------------CC--C--ACATGATTCT-TTTCTTTTTTGGTTTC------GATTACG------ATC----CGACCAACC-AATGAAACGCACC---------GCCACCT-----CGACAAAACGACAAAACCAA---CCCACAA-TG-TACCAC-----------------A--------------------A-------------------------------------------------------------------TGCACCACATTGCA--CCACTCGAACCGC---------------AAAC--------------------------------------------------CACGTGAAAC--TGCC-CCACACTAACCACT-----------AGAAACTCTACTCCACAACACGCCCCATC---CAGCAGCACCCGCCAGCGGACCASizeHit CountTotal NormTotal
No Reads
droTak1
AGCAATTTATTAGGAAATT---CAGTTGAAATGTGCTTACCAGCGACGCCTAGGTTCGTATTTTT---AAC------------TATTGTTTC-------------------------------ATTTCAGTTTAA-TT---------------A-------TAA-TTTTTAATCA------ACTGCCATTTG--------TACTTTTTC-C--CCA-----------------------------------CCCAC-CCAACC----ACG------CCGCCACTCCACC-AACT-TCCAACTTC---CCCAAA-ATCCACCACCACCCAC--ACATGATTCT-TTTCTTTTTACGATCC------GATC----------------TGAACTA-A-T-----CTGCACA---AC---CACCACAT-----CGACAA--------AACCAA---ACCACAA-TG-TACCAC-----------------A--------------------A---------A---------------------------------------------------------TGCACCACATTGCA--CCAATC------C---------------GAAC--------------------------------------------------CGCGTGAAAC--TGCC-GCACACTAACCACT-----------AGAAACTCTACTCCACAACACGCCCCAAC---CAGCAGTAACCGCCAGCGGACCASizeHit CountTotal NormTotal
No Reads
droEle1
AGCAATTTATTAGGAAATT---CAGTTGAAATGTGCTTACCAGCGGCACCTAGGTTCGTATTTTT---AAC------------TATTGTTTA-------------------------------ATTTTAGTTAAA-TT---------------A-------TAATTTTTTAATCA------ACTGCCATTTG--------TACTTTTT-TTCCCCA-----------------------------------ACAA------CC----ACG-------CGCCACTCCACCAAATTTCCCCACCC----A-----------------CC--C--ACATGATTCT-TTTCTTTTTTGGTTTC------GATAACG------ATT----CGACC-----AATGAAATGCACC---------ACCACTT-----CTACAA-------AAACCAA---CCCACAA-TG-TACCACAA-------TGTACCACAATGTACCACAATGTACCACAATGCACCACAT---------------------------------------------------------TGCACCACATTGCA--CCACTCGAATCAC---------------AATC--------------------------------------------------CTCGTGAAAC--TGCC-GCACACTAACCACT-----------AGAAACTCTACTCCACAACACGCCCCAAC---CAGCAGCACCCGGCAGCGAACCASizeHit CountTotal NormTotal
No Reads
droRho1
AGCAATTTATTAGGAAATT---CAGTTGAAATGTGCTTACCAGCGGCGCCTAGGTTCGTATTTTT---AAC------------TATTGTTTC-------------------------------ATTTCATTTAAT-TT---------------A-------TAA-TTTTTAATCA------ATTGACATTTG--------TACTTTT-TTC---CA-----------------------------------CCAA------------------CCCACGCCACTCCACA-AATACCCCAACCC----A-----------------CC--C--ACATGATTCT-TTTCTTTTTTGGTTTC------GATAACG------GTT----CGACCAACC-AATGAAATACACC---------ACCA-------------A-------AAACCAA---CCCACAA-TG-TACCACAA-------TGTACCACA--------------------A-------------------------------------------------------------------TGCACCACATTGCA--CCACTCGAACCAC---------------AAAC--------------------------------------------------CTCGTGAAAC--TTCC-GCACACTAACCACT-----------AGAAACTCTACTCCACAACACGCCCCAAC---CAGCAGCAACCGGCAGCGAACCASizeHit CountTotal NormTotal
No Reads
droFic1
AGCAATTTATTAGGAAATT---CAGTTGAAATGTGCTTACCAGCGGCGCCTAGGTTCGTATTTTT---AAC------------TATTGTTTC-------------------------------ATTTCAGTTTAA-TT---------------A-------TA--TTTTTAATCA------ACCGCCATTTG--------TACTTTT-CCC--CCA-----------------------------------CCA-------------------ACCACGCCACTCCACC-AACT-CCCCACCC----A-----------------CC--C--ACATGATTCT-CTTCTTTTCTGGTTTC------GATTACG------ATC----CGACCATCC-AACG-AATGCACC---------ACCACCT-----CGACCA-------AAACCAA---CCCACAA-TG-TACCAC-----------------A--------------------A-------------------------------------------------------------------CGTACCACATTGCA--CCTCTCGAACTGC---------------G-AC--------------------------------------------------CACGTGAAAC--TGCC-GCACACTAACCACT-----------AGAAACTCTACTCCACAACACGCCCCATC---CAGCAGCAACCGCCAGCGGACCASizeHit CountTotal NormTotal
No Reads
droKik1
AGCAATTTATTAGGAAATT---CAGTTGAAATGTGCTTACCAGCGATGCCTAGGTTCGTATTTTTTTAAAC------------TATTGTTTCA------------------------------ATTTCAGTTAAATTT---------------A-------TGA-TTTTTAATCGAA----AATGCCATTTG--------TACTTTTTC-C--CC-CCGC----------CAC----CT--------------------------------------------CCCACA-AAC---CCCACCC----A-----------------CC--C--ACACGATTCT-TCTCTTTTTTGGTTTAC-----GATTACA------ATC----CGAA---ATATACGAAATGCACC---------AACACCT-------------------------------------------------------------------------------------------------------------------------------------------------------TGCACCACATTGCACACCACTCGAACCAC---------------GATC--------------------------------------------------CATGTGAAACTCTGCTGCCACACTAACCACT-----------AGAAACTCTACTCCACAACACGCCCCGATCAGCAGCAGCAACAGGCAGCGCACCASizeHit CountTotal NormTotal
No Reads
droAna3
AGCAATTTATTAGGAAATT---CAGTTGAAATGTGCTTACCAGCGACGCCTAGGTTCGTATTTTT---ACC------------TATTGTTTC-------------------------------ATTTCAGTTAAA-TT---------------A-------TGA-TTTTTAATCA------ATTGCCATTTG--------TACTTTTTC-C--CCACCGCTCACCAAATCCACCCAC------------------------CCCCAAAAACCACTCACTCCACTCCAC--------------C----A-----------------CC--C--ACATGATTCT-TTTCTTTTTTGGTTTC------GATTACG------ATC-CAATGACCA-----------------------------ACCT-----CGACAA--------AACCAACAACACT------------C-----------------A--------------------A-------------------------------------------------------------------TGCACCACATTGCA--CCACTCGAAATAC-------------CTAAAC--------------------------------------------------CGCGTGAAAC--TGAC-GCACACTAACCACT-----------AGAAACTCTACTCCACAACACGCCCCATC---CAGCAGCAGCCGGACGCGCACCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............................ATGTGCTTACCAGCGACGCCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTACTCCACAACACGCCCCATC---CAG....................2611.001100000
.....................................................GTTCGTATTTTT---ACC------------TATT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCA--CCACTCGAAATAC-------------CT.......................................................................................................................................................2111.001010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCCCCATC---CAGCAGCAGCCGGA.........2411.001100000
droBip1
AGCAATTTATTAGGAAATT---CAGTTGAAATGTGCTTACCAGCGACGCCTAGGTTCGTATTT-T---ACC------------TATTGTTTC-------------------------------ATTTCAGTTAAA-TT---------------A-------TGA-T-TTTAATCA------ATTGCCATTTG--------TACTTTTTC-C--CCACCGT------AATCCAC-CAC------------------------CCCAAAATACCACTCACTCCACTCCACC-------------C----ACCCAACAACCACCCACACC-AC--ACATGATTCT-TTTCTT-TTTGGTTTC------GATCTCG------ATC----C---------AA-----TGAA------------CAACCT-----CGACAA--------AACCAACAACACT------------C-----------------A--------------------A-------------------------------------------------------------------TGCACCACATTGCA--CCACTTGACACAC-------------TTGAAC--------------------------------------------------CGCGTGAATC--TGAC-GCACACTAACCACT-----------AGAAACTCTACTCCACAACACGCCCCATC---CAGCAGCAACCGGACGCGCACCASizeHit CountTotal NormTotal
No Reads
dp5
AGCAATTTATTAGGAAATT---CAGTTGAAATGTGCTTTCCAGCGGCGCCTAGGTTCGTATTATTTT-ATT------------TATT---TG------------------------ATTATTCATTCGAATTAAT-TT---------------A-------TGA-TTTCTAATCG------ATNNCCACTCAACCCCCCACCCTTTCTC-C--CCA------------------------------------------------------------------CTCC-CC-AACC------CCC----G-----------------CC--C--ACACGGTTCTGTTTCTTTTTTGGTTACCAACAC----ACG------A----------------------------------------------------------------------CACCACA------------C-----------------A-------------------------------------------------------------------------------------------------CTGCA--CCACA----------ATCGAC---CCTCGGACC-------------------------------------------------CTCG-----------------ACCAACCACTCTAATCCGTAAAGAAACTCTACTCCACAACACGCACCCATTAGCAGCAGCAGCCGACAGCGCACCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAACACGCACCCATTAGCAGC...................2311.0010100000000
................ATT---CAGTTGAAATGTGCTTTCCAGCGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCCGACAGCGCACC.2311.0010001000000
droPer2
AGCAATTTATTAGGAAATT---CAGTTGAAATGTGCTGTCGAGCGGCGTCTACGTGCGTATTTTTTT-ATT---------------TATTTG------------------------ATTATTCACTCGAATTAAT-TT---------------A-------TGA-TCTCTACTCG------ATTGCCACTCAACCCCCCATCCTTTCTC-C--CCA------------------------------------------------------------------CTCC-CC-AACC-TC----CG----T-----------------CC--G--ACACTGTTCTGTTTCTTTTTTGGTTACCTACAC----ACG------A----------------------------------------------------------------------CACCACA------------C-----------------A-------------------------------------------------------------------------------------------------CTGCA--CCACA----------ATCGAC---CCTCGGACC-------------------------------------------------CTCG-----------------ACCAACCACTCTAATCCGTAAAGAAACTCTACTCCACAACACGCACCCATCAGCAGCAGCAGCCGACAGCGCACCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
AGCAATTTATTAGGAAATT---CTGTTGAAATGTGCTTACCAACGACACCTAGGTTTGTATTGAT---ATA------------TATACAT----------------ATATATATTA-------AGAGTAC----T-TCTCAATTGGTATTTATATTTTGTTT-A-TATTTAATTA------AATG-CATTTA--------TCTTTTT-TCA--TTT----------------------------------------------------------TCTT-TCCCTTTAT--------------CC---CCCAAA-AAAAAAAAAAAAAAATATATACGTT--T-ATCTTTTTTTGGTTAC------GAATGCG------A---------C------AACAAAATACTCA---AC---CACAACAACCACTCAAC----------------------------------------------------------------------------------------------------------------------------------------------TACACC--ACTGCA--CTCCACACATTGCC-ATCGATAACGTCTGCACCGTGCACTATGCAAAAAAATATTAAATAATAATAAATCAAAACAAATAAACCTGTCATACTTTG-T-CCACACTAACCACA-----------AGAAACTCTACTCCACAACATGCCCC------TAGCAGTAGCCGTACGCGCACTASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACAACATGCCCC------TAGCAGT................2112.00200110
...AATTTATTAGGAAATT---CTGTTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000
........ATTAGGAAATT---CTGTTGAAATGTGCTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00110000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTAACCACA-----------AGAAACTCT..............................................2011.00101000
droVir3
TGCAATATATTAGGAAATT---CTGTTGAAATGTGCATACCATCGGCGTCTAGGTTTGTATTTTA---AATAC-------AAAT-ATGTAAC-------------------------------A---CTGTTAAT-TT---------------GTT-----TAG-TTTATACTGA------AACGCGAATTG--------TATATGT-AC-----------------------------------------------------------------------------------------------------------------------------TGTCATT-TTTCTTTTTTGGTTTC------AATATCG------ACAACTACGAC-----------AACGCACT---------ACCACAT--CCACAACAA-------CAAC-AACA-ACAACAATTGCTACTACAACAACAATTGC---------TA-------CTACAACAACGCACCACACCACAAAACATCTGCACACGCC--------------------ATCCAC---ACACAAC-----TACTCTGCA--CAAT--AAAATGCCA------------AAAAA--------------------------------------------------AATGTCAAA---TGTG-CCACACTATTAACC-----------AGAAACTCTACTCCACAACATGCAC---C---CAGTAGTAGCCGCCAGCGCACCASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCACAACATGCAC---C---CAGTAGT................2311.001000000000000000000000000000000000000000000000000000000000001000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTCCACAACATGCAC---C---CAGT...................2311.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................TACTGA------AACGCGAATTG--------TATATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
................................GTGCATACCATCGGCGTCTAGGTTTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000001000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................CAACTACGAC-----------AACGCACT---------AC...............................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC-AACA-ACAACAATTGCT..................................................................................................................................................................................................................................................................................................................19200.051001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------CAAC-AACA-ACAACAATTG....................................................................................................................................................................................................................................................................................................................19200.051001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................ACAA-------CAAC-AACA-ACAACA........................................................................................................................................................................................................................................................................................................................18200.051000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................CCACAACAA-------CAAC-AACA-ACAAC.........................................................................................................................................................................................................................................................................................................................22200.051000000000000000000100000000000000000000000000000000000000000000
droMoj3
AGCGATATTTTAGGAAATT---CTGTTGAAATGTGCATGCCAGCGGCGTCTAGGTTTGTATTTTA---TATACAAAATATAAATATGTGTACATTTGCATATATGTATATG-CTCG-------ATATT-CTTGAC-TT---------------GTG-----TG------------------------AATTG--------TTTATGT-ATT---------------------------------------------------------------------------------------------GTCA-----------------TT--T--TTATTATTC--TTTATTTTTTGGTTAC------TACAACG------AAC----C-----------------ACACC---------AATACCT-----CAACAA-------CAAC-AACA----------------AC-----------------A--------------------ACGCACTACACTACA-TACATTTGCACATGTCAATTCGACACCACCAACACCACCCACACCACACAAC-----CACTCTGCA--C---ATTAAATGCTC--------------A-A--------------------------------------------------TATGCC-AAC--TACG-CGACACTAATCACA-----------AGAAACTCTACTCCGCAACATGCAC---C---CAGTAGCAGCCGTCAGCGCACCASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAACTCTACTCCGCAACA...................................2011.001100000
..................................GCATGCCAGCGGCGTCTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAGCAGCCGTCAGCGCACCA2211.001000100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAC---C---CAGTAGCAGCCGTC.........1911.001000001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................CCT-----CAACAA-------CAAC-AACA----------------AC-----------------A--------------------ACG....................................................................................................................................................................................................................................................................2330.331100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................CCT-----CAACAA-------CAAC-AACA----------------AC-----------------A--------------------A......................................................................................................................................................................................................................................................................21200.051100000
droGri2
TGCAATATATTAGGAAATTCTTCTGTTGAAATGTGCATACCGACGGCGTCTAGGTTTGTATCTACCTAAAC-------ATAAATACATATAC---TATATATATATATATAATTTG-------ACATTAT----T-TT---------------GTG-----TGT-TTTATTTTCGAATATAATTGCGAACTG--------TATATGT-GCT---------------------------------------------------------------------------------------------ATC-----------------------------ATTTTC-TTTATTTTTTGGTTAC------GATT----------------TGAACAA-C-TCTGCAA---------------------------------------------------------------------------------------------------------CTGCACCACA----------------------------------------------------------CACATCAATATGCA--CCACATCAAATGC---------------CAAT--------------------------------------------------TG---CAAAC---GCTTACACACTAATCACA---------ATAGAAACTCTACTCCACAACATGCACCCAT---TAGC---AGTCGGCAGCGCACTASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGC---AGTCGGCAGCGCAC..1811.00110

Generated: 05/18/2015 at 01:04 PM