ID:

dsi_13602

Coordinate:

3l:16412220-16412369 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TCCCACTCACACTTTCGTTAGCCCGGTCAAAAATGGATGCGCCCAAGCAGGTAAATGACAAATTTATCCCACCAAAAAAAAAAAGTTACTACGCTTGTTTGTTATTTTCATTTGTTGTTGCAACTTTAACTTTAGCAAGCTAACTAGGCTAAGAGACAGAGGCGGATAAAGCCACAAAATGTGCGTGACAAGTTGGCGGCCTGTCTTTTGTGCCGCCAAAAAGTGCCACGCCCCTTGCCCCATTAAAGCT ************************************************((((((.....)))))).((.((((.........(((.((..((((((((((((.........((((...))))........)))))))).....))))..)).)))...(((.......)))......(((.....)))..)))).)).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	M053 female body
.............................AAAATGGATGCGCTCAAGC..........................................................................................................................................................................................................	19	1	1	1.00	1	1	0	0	0
..CCACTCACACTTTCGTTAGCC...................................................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0
.............................AAAATGGATGGGCTCAAGC..........................................................................................................................................................................................................	19	2	4	0.25	1	1	0	0	0
....................................................................................GATACTACCCTTGTTTG.....................................................................................................................................................	17	2	4	0.25	1	0	1	0	0
........................................................................................................................................AAGCTAACGAGGGTAAGTGA..............................................................................................	20	3	7	0.14	1	0	0	1	0
...............................................................................................................................................................................AAAATGTTCGTGACTAGT.........................................................	18	2	7	0.14	1	1	0	0	0
............................GAAAATGGATGGGCTCAAGC..........................................................................................................................................................................................................	20	3	16	0.13	2	1	0	0	1
...............................AATGGATGCGCTCAAGCGTG.......................................................................................................................................................................................................	20	3	9	0.11	1	1	0	0	0
..........................................................................................................................................................GATGGAGGCGGATAAAACCA............................................................................	20	3	11	0.09	1	0	1	0	0
...........................................CAGGCAGGTAGATGACGA.............................................................................................................................................................................................	18	3	20	0.05	1	0	1	0	0

Anti-sense strand reads

AGGGTGAGTGTGAAAGCAATCGGGCCAGTTTTTACCTACGCGGGTTCGTCCATTTACTGTTTAAATAGGGTGGTTTTTTTTTTTCAATGATGCGAACAAACAATAAAAGTAAACAACAACGTTGAAATTGAAATCGTTCGATTGATCCGATTCTCTGTCTCCGCCTATTTCGGTGTTTTACACGCACTGTTCAACCGCCGGACAGAAAACACGGCGGTTTTTCACGGTGCGGGGAACGGGGTAATTTCGA ************************************************((((((.....)))))).((.((((.........(((.((..((((((((((((.........((((...))))........)))))))).....))))..)).)))...(((.......)))......(((.....)))..)))).)).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	GSM343915 embryo	SRR618934 dsim w501 ovaries	SRR553485 Chicharo_3 day-old ovaries	O002 Head	SRR553487 NRT_0-2 hours eggs	SRR902009 testis
...................................................................................................................................................................................CCACGCACTGTTCAGCTGCCGGA................................................	23	3	3	0.33	1	1	0	0	0	0	0
..........................................................................................................................TGAAATTGAAATAGTT................................................................................................................	16	1	20	0.10	2	0	2	0	0	0	0
......................................CGCGGGCTTGTCCATTT...................................................................................................................................................................................................	17	2	13	0.08	1	0	0	1	0	0	0
.................................................................GAGGGTGGTTTTTTTTTTT......................................................................................................................................................................	19	1	19	0.05	1	0	0	0	1	0	0
........................................................................CGTTTTTTATTTCAATGATG..............................................................................................................................................................	20	3	20	0.05	1	0	0	0	0	1	0
...............................................................ATTAGGTTGGTTTTTTTTTTT......................................................................................................................................................................	21	2	20	0.05	1	0	0	0	0	0	1
.......................................................ACCGTGTAAATAGGGTG..................................................................................................................................................................................	17	2	20	0.05	1	0	1	0	0	0	0

Generated: 04/24/2015 at 04:49 AM