ID:

dsi_13594

 Coordinate:

3r:4256297-4256442 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-29.5 -29.4 -29.4

Flybase annnotation

exon [3r_4255127_4256296_-]; CDS [3r_4255127_4256296_-]; CDS [3r_4256443_4257834_-]; exon [3r_4256443_4257834_-]; intron [3r_4256297_4256442_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ACAGCTCCACACCCGTGATCTTGGCGTCCTCGCCCAGCGCTCAAAGAGCGGTAAGTATAAAATTTAGCATAGCTTAACTGGAGAACTTTTAGTTAGGAATTTCTTTGATTTTCCCGGACCAATATCTGAAATTCTATCACATGCGAAAATGGAAATTAGTCTCTCTGTGCTAATTAACTTACTTATTCGGTTTCAGAAGACTTTGGCTTTGCCTAGTAGCAGTACCTCCGCCACCACTACCACGAC
**************************************************(((((((......(((((((((..((((((((.....))))))))((((..((...))..)))).((((.(((.(((....(((..........)))...))).))).))))..)))))))))......)))))))..........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
.........................................................................................................................................................AATTAGTCTCTCTGTGCT........................................................................... 18 0 1 1.00 1 0 1 0 0
.............................................................................................................................................................................................GTTTCGGAAGACTTTGGC....................................... 18 1 1 1.00 1 1 0 0 0
......................................................................................TCTTAGTTAGGATTTTTTTTGAT......................................................................................................................................... 23 3 2 0.50 1 0 0 1 0
...........................................................................................................................................................................................................TGGCTTTGCCGAGTA............................ 15 1 8 0.13 1 1 0 0 0
...........................................................................................................................................................................................................TGGCATTGCCGAGTAGC.......................... 17 2 17 0.06 1 1 0 0 0
.........................................................................................................................................................................................TTCGTTTTCAGAAGA.............................................. 15 1 20 0.05 1 0 0 0 1
.....................................................................................................TCTTTGATTTTAGCGGA................................................................................................................................ 17 2 20 0.05 1 0 0 1 0
.........CACCCGTGTTGTTGGCCTC.......................................................................................................................................................................................................................... 19 3 20 0.05 1 0 1 0 0

Anti-sense strand reads

TGTCGAGGTGTGGGCACTAGAACCGCAGGAGCGGGTCGCGAGTTTCTCGCCATTCATATTTTAAATCGTATCGAATTGACCTCTTGAAAATCAATCCTTAAAGAAACTAAAAGGGCCTGGTTATAGACTTTAAGATAGTGTACGCTTTTACCTTTAATCAGAGAGACACGATTAATTGAATGAATAAGCCAAAGTCTTCTGAAACCGAAACGGATCATCGTCATGGAGGCGGTGGTGATGGTGCTG
**************************************************(((((((......(((((((((..((((((((.....))))))))((((..((...))..)))).((((.(((.(((....(((..........)))...))).))).))))..)))))))))......)))))))..........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
..................................................................................................TAAAGAAAGTAAACGGGTCTGGT............................................................................................................................. 23 3 1 2.00 2 1 1 0 0 0
..................AGAAACGCATGAGCGGGT.................................................................................................................................................................................................................. 18 2 2 0.50 1 1 0 0 0 0
............................................................................................................................AGACTTGAAGACAGTGAACGC..................................................................................................... 21 3 3 0.33 1 1 0 0 0 0
.......................................................................................................AAACTGATAGGGCCTGTTTAT.......................................................................................................................... 21 3 10 0.10 1 0 0 0 1 0
.................................................................................TCTTGGAAAGCAATCCTTG.................................................................................................................................................. 19 3 11 0.09 1 0 0 1 0 0
.......CTTTGCGCACTAGAACCGC............................................................................................................................................................................................................................ 19 3 17 0.06 1 0 0 1 0 0
..................................................................................................................................................................................................................................AGGGGGTGGTGATGGT.... 16 1 18 0.06 1 1 0 0 0 0
.................................................................................................................................................................................................................................GAGGCGGTGGTGCTG...... 15 1 20 0.05 1 0 0 0 0 1

Generated: 04/23/2015 at 11:27 PM