ID:

dsi_1358

 Coordinate:

3l:8182978-8183127 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-0.8

Flybase annnotation

CDS [3l_8183128_8186957_+]; exon [3l_8183128_8186957_+]; intron [3l_8177456_8183127_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GCTGTTCATGATGATGATGATGAGATTTTAATATGCATTTGGTGCTTGGAGTTCGGTTTACGGTTAGCTTAATAACATATCCCATCCATTCATCCTCCTTTAACAAAAACCACACACACACAACACTTAGATCAGAGCAGGAAAATATACAAGAATCTCATGAGAACTTTTCGCGACCGATCTTTATCCCCCATCCGCAGCTGCCCATCCTGGTGCCGTTTGCTACAGCCACGCCCACTGTCAAATGTTC
****************************************************************************************************************...................((((((...................))).)))......********************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 O002
Head
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
..................................................................................................................................................ATACAAGAATCTCATGAGAACTT................................................................................. 23 0 1 3.00 3 0 3 0 0 0
........TGATGATGATGATGAGA................................................................................................................................................................................................................................. 17 0 8 1.75 14 14 0 0 0 0
.......ATGATGATGATGATGAGA................................................................................................................................................................................................................................. 18 0 6 1.50 9 9 0 0 0 0
................................................................................................................CACACACACAACACTTAG........................................................................................................................ 18 0 1 1.00 1 0 0 1 0 0
............................................................CGTTCAGCTTAATAACATA........................................................................................................................................................................... 19 2 1 1.00 1 0 0 0 1 0
........TGATGATGATGATGAGAT................................................................................................................................................................................................................................ 18 0 3 0.33 1 1 0 0 0 0
.........GATGATGATGATGAGA................................................................................................................................................................................................................................. 16 0 14 0.29 4 4 0 0 0 0
.....TTATGATGATGATGATGAGA................................................................................................................................................................................................................................. 20 1 5 0.20 1 1 0 0 0 0
........TGATGATGATGATGAG.................................................................................................................................................................................................................................. 16 0 20 0.20 4 4 0 0 0 0
.....TCATGATGATGATGATGAAA................................................................................................................................................................................................................................. 20 1 6 0.17 1 1 0 0 0 0
.......ATGATGATGATGATGAG.................................................................................................................................................................................................................................. 17 0 20 0.15 3 3 0 0 0 0
.....TAATGATGATGATGATGAGA................................................................................................................................................................................................................................. 20 1 8 0.13 1 1 0 0 0 0
........TGATGATGATCATGAGA................................................................................................................................................................................................................................. 17 1 9 0.11 1 1 0 0 0 0
..........ATGATGATGATGAGA................................................................................................................................................................................................................................. 15 0 19 0.11 2 2 0 0 0 0
.......ATGATGCTGATGATGAGA................................................................................................................................................................................................................................. 18 1 10 0.10 1 0 1 0 0 0
..........................................................................................................................................................................................................................TTTGCTACAGGAACGACCA............. 19 3 17 0.06 1 1 0 0 0 0
.......GTGATGATGATGATGAGA................................................................................................................................................................................................................................. 18 1 20 0.05 1 1 0 0 0 0
.....TCATGATGATGATGAT..................................................................................................................................................................................................................................... 16 0 20 0.05 1 1 0 0 0 0
........................................................TTTACGATTAGCTTAAAA................................................................................................................................................................................ 18 2 20 0.05 1 0 0 0 0 1

Anti-sense strand reads

CGACAAGTACTACTACTACTACTCTAAAATTATACGTAAACCACGAACCTCAAGCCAAATGCCAATCGAATTATTGTATAGGGTAGGTAAGTAGGAGGAAATTGTTTTTGGTGTGTGTGTGTTGTGAATCTAGTCTCGTCCTTTTATATGTTCTTAGAGTACTCTTGAAAAGCGCTGGCTAGAAATAGGGGGTAGGCGTCGACGGGTAGGACCACGGCAAACGATGTCGGTGCGGGTGACAGTTTACAAG
*********************************************************************************...................((((((...................))).)))......**************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
............................................................................................AGGAGGAAATTGTTTTTGGTGTGTGT.................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................................................................GTACTCTTGAAAAGCGCTGGCTAGAAA................................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0
..........................................................................................................................................................................................................CGGGTATGACTACGGCAAA............................. 19 2 4 0.25 1 0 0 1 0 0 0 0
........................................................................................................................................................................................ATAGGGGGTGGCAGTCGACGG............................................. 21 3 6 0.17 1 0 0 0 0 1 0 0
...............................................................................................................................................CTATATGTTCTTAGA............................................................................................ 15 1 7 0.14 1 0 0 0 0 0 1 0
........................................................ATATGCCAATCGAAT................................................................................................................................................................................... 15 1 8 0.13 1 0 0 0 1 0 0 0
...........................................................................................................................................................AGAGTACGCTTGAAA................................................................................ 15 1 10 0.10 1 0 0 0 1 0 0 0
..............................................................................................................................................TTAATATGTTCTTCGAGCAC........................................................................................ 20 3 10 0.10 1 0 0 0 0 0 0 1
...................................................................................................................................AGTCTCGTGCTTTTA........................................................................................................ 15 1 20 0.05 1 0 0 0 0 1 0 0
.....AGTACTACTACTACTACT................................................................................................................................................................................................................................... 18 0 20 0.05 1 0 0 0 0 0 1 0

Generated: 04/24/2015 at 10:43 AM