ID:

dsi_13556

 Coordinate:

3r:10082016-10082165 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

CDS [3r_10081795_10081981_-]; five_prime_UTR [3r_10081982_10082015_-]; exon [3r_10081795_10082015_-]; intron [3r_10082016_10082486_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ATCACGCATGCACCCTGAAGCCAAAGGAAGGAGCTCAATACTTGGCAAACATCTCGTTTGACAATCCATTGGGCCGTTCTACATATATATAAATGGCGATAATTTGTTTACGTCGCATCAAGCCTAAGAGCTTAGACACTCGAGTTGCATTGGTTTTGGCGCGCTAATACGTAGCATCTTAATTGACCACTTAATTGCAGGCAATCACTGGAACTTGATGCCCTACCCACAGGCATGGCGGTCAAGGTGC
**************************************************.......(((.((((....(((((((((.............))))))..(((..((((.(((((((.(((((((....(((((........))))).....)).))))).))).....))))))))..))).....)))....)))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
............................................................................................................................................................................................................TCACTGGAACTTGATGCCCTACCCAC.................... 26 0 1 1.00 1 0 0 0 0 1 0
...........................................................................................................................................................................................................ATCACTGGAACTTGATGCCCTACCCACA................... 28 0 1 1.00 1 0 0 1 0 0 0
..........................................................................................................................................................................................................AATCACTGGAACTTGATGCC............................ 20 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................................................................................................ATCACTGGAACTTGATGCCCT.......................... 21 0 1 1.00 1 0 0 0 1 0 0
............................................................................................................................................................................................................TCACTGGAACTTGATGCCCTACCCACA................... 27 0 1 1.00 1 0 1 0 0 0 0
............CCCTGAAGCCAAAGGAAGGAGCTC...................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................GGCGCGGTAATACGGA............................................................................. 16 2 18 0.06 1 0 1 0 0 0 0
.................................................................................................................................................................CGCTAATACGTAGGT.......................................................................... 15 2 20 0.05 1 0 0 1 0 0 0
..................................................................................................................GTATGAAGCCTAAGCGCT...................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 1

Anti-sense strand reads

TAGTGCGTACGTGGGACTTCGGTTTCCTTCCTCGAGTTATGAACCGTTTGTAGAGCAAACTGTTAGGTAACCCGGCAAGATGTATATATATTTACCGCTATTAAACAAATGCAGCGTAGTTCGGATTCTCGAATCTGTGAGCTCAACGTAACCAAAACCGCGCGATTATGCATCGTAGAATTAACTGGTGAATTAACGTCCGTTAGTGACCTTGAACTACGGGATGGGTGTCCGTACCGCCAGTTCCACG
**************************************************.......(((.((((....(((((((((.............))))))..(((..((((.(((((((.(((((((....(((((........))))).....)).))))).))).....))))))))..))).....)))....)))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M024
male body		 SRR553488
RT_0-2 hours eggs
 M025
embryo
 SRR1275487
Male larvae		 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
...................................................................................................................................ACTCTGTGAGCTCAA........................................................................................................ 15 1 8 0.25 2 2 0 0 0 0 0 0
.........................CCTTCCGCGAGTTCTCAACC............................................................................................................................................................................................................. 20 3 6 0.17 1 0 1 0 0 0 0 0
.............................................................................................................CGATGCGTAGTTCGGATTC.......................................................................................................................... 19 3 8 0.13 1 1 0 0 0 0 0 0
...................................................TGAGCAACATGTTAGGTAAC................................................................................................................................................................................... 20 3 9 0.11 1 0 1 0 0 0 0 0
........................................................................................................................................................................................................................CTAAGGGATGGGTGT................... 15 1 10 0.10 1 1 0 0 0 0 0 0
........................................................................................................................TCGGATTCTGGAATCAGA................................................................................................................ 18 3 20 0.10 2 0 2 0 0 0 0 0
.............GGGCTTCGGTTTCCATCCA.......................................................................................................................................................................................................................... 19 3 16 0.06 1 0 0 1 0 0 0 0
.......................................................................................................................................................................................................................TCTAAGGGATGGGTGTTCG................ 19 3 16 0.06 1 0 1 0 0 0 0 0
......................................................................................................................................ATGTGAGCTCAACGT..................................................................................................... 15 1 20 0.05 1 0 0 1 0 0 0 0
.......................................................................................................................................................................................................................TCTAGGGGATGGGTGTTC................. 18 3 20 0.05 1 0 0 0 0 1 0 0
.....................................................................ACTCGGCAAGGTGTAT..................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 1
...........................................................................................................................................................................................................TGGTGCCCTTGAACTA............................... 16 2 20 0.05 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................ACCGCGGGATGGGTGTTC................. 18 3 20 0.05 1 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................TCTAAGGGATGGGTG.................... 15 2 20 0.05 1 0 0 0 0 0 1 0
......................................................................................................................................................................................................TCAGTTAGTCACATTGAAC................................. 19 3 20 0.05 1 0 0 0 1 0 0 0

Generated: 04/24/2015 at 10:25 AM