ID:dsi_13555 |
Coordinate:3l:7784461-7784578 - |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
exon [3l_7783928_7784460_-]; CDS [3l_7783928_7784460_-]; CDS [3l_7784579_7784839_-]; exon [3l_7784579_7784839_-]; intron [3l_7784461_7784578_-]
No Repeatable elements found
| ##################################################----------------------------------------------------------------------------------------------------------------------################################################## CGGAGCAGATGACTCAAGCAGCACTGCTGAATCCCAAGTAGTTCAAACAGGTACTCTAAGGTCCATTTTAAAAATCGATGTGATTTCTAACTCGCAGTAGATTCCATATCGGTTGGGAATAACCTCTGATTGAACAAGGTATTTACAATGAAATTCTACATTTTTCAGCATCAGAAAACTTTAGAGATCCTGAAACCACCTCAGTTTCAAACTCGCCA **************************************************....((..((((..(((((...((((((((((...((((........))))...)))))))))).))))).))))..))...................(((((.........))))).************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR553488 RT_0-2 hours eggs |
SRR553486 Makindu_3 day-old ovaries |
SRR553485 Chicharo_3 day-old ovaries |
SRR553487 NRT_0-2 hours eggs |
SRR618934 dsim w501 ovaries |
|---|---|---|---|---|---|---|---|---|---|---|
| ......................................................................................................................................................................................AGAGATCCTGAAACC..................... | 15 | 0 | 1 | 3.00 | 3 | 0 | 2 | 1 | 0 | 0 |
| .....................................................CTCGAAGGTCCAGTTTAAAA................................................................................................................................................. | 20 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 |
| ......................................................TCCAAGGTCCATTTTAAAA................................................................................................................................................. | 19 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 |
| .....................................................................................................................................................................................AAGAGATCCTGAAAC...................... | 15 | 1 | 8 | 0.38 | 3 | 0 | 3 | 0 | 0 | 0 |
| ......................................................................................................................................................................................ATAGATCCTGAAACC..................... | 15 | 1 | 10 | 0.30 | 3 | 1 | 0 | 1 | 1 | 0 |
| ......................................................................................................................................................................................ATAGATCCTGAAACCGC................... | 17 | 2 | 11 | 0.27 | 3 | 2 | 0 | 0 | 1 | 0 |
| ......................................................................................................................................................................................ATAGATCCTGAAACCGCAT................. | 19 | 3 | 20 | 0.25 | 5 | 1 | 1 | 1 | 2 | 0 |
| ....................................................................................................................................................................TCAGAATCAGAAAACT...................................... | 16 | 1 | 6 | 0.17 | 1 | 0 | 0 | 0 | 0 | 1 |
| ......................................................................................................................................................................................AGAGATCCTGATACC..................... | 15 | 1 | 7 | 0.14 | 1 | 0 | 1 | 0 | 0 | 0 |
| ......................................................................................................................................................................................AGAGATCCTGAAACCGT................... | 17 | 2 | 9 | 0.11 | 1 | 0 | 0 | 1 | 0 | 0 |
| ......................................................................................CTAACTCGCAATAGA..................................................................................................................... | 15 | 1 | 10 | 0.10 | 1 | 1 | 0 | 0 | 0 | 0 |
| ...........................................................................................................ATCGGATTGGACTAACCTC............................................................................................ | 19 | 3 | 14 | 0.07 | 1 | 1 | 0 | 0 | 0 | 0 |
| ......................................................................................................................................................................................AGAGATCCTGAAACT..................... | 15 | 1 | 14 | 0.07 | 1 | 0 | 0 | 0 | 0 | 1 |
| .......................................................CTAAGGTCCGTCTTCAAAA................................................................................................................................................ | 19 | 3 | 16 | 0.06 | 1 | 1 | 0 | 0 | 0 | 0 |
| ......................................................................................................................................................................................ATAGATCCTGAAACCGCGT................. | 19 | 3 | 16 | 0.06 | 1 | 1 | 0 | 0 | 0 | 0 |
| .............................................................................ATGTGATTGCTGACTCGGA.......................................................................................................................... | 19 | 3 | 16 | 0.06 | 1 | 0 | 1 | 0 | 0 | 0 |
| .....................................................................................................................................................................................TATAGATCCTGAAACCG.................... | 17 | 2 | 19 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 |
| ......................................................TCCAAGGTCCACTGTAAAA................................................................................................................................................. | 19 | 3 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 |
| .......................................................................................................................................................................................TAGATCCTGAAACCGC................... | 16 | 2 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 |
| ........................................................................................................................................................................................AGATCCTGAAACCGCAT................. | 17 | 2 | 20 | 0.05 | 1 | 0 | 0 | 0 | 1 | 0 |
|
GCCTCGTCTACTGAGTTCGTCGTGACGACTTAGGGTTCATCAAGTTTGTCCATGAGATTCCAGGTAAAATTTTTAGCTACACTAAAGATTGAGCGTCATCTAAGGTATAGCCAACCCTTATTGGAGACTAACTTGTTCCATAAATGTTACTTTAAGATGTAAAAAGTCGTAGTCTTTTGAAATCTCTAGGACTTTGGTGGAGTCAAAGTTTGAGCGGT
**************************************************....((..((((..(((((...((((((((((...((((........))))...)))))))))).))))).))))..))...................(((((.........))))).************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR553487 NRT_0-2 hours eggs |
SRR553488 RT_0-2 hours eggs |
SRR553485 Chicharo_3 day-old ovaries |
SRR553486 Makindu_3 day-old ovaries |
GSM343915 embryo |
SRR618934 dsim w501 ovaries |
|---|---|---|---|---|---|---|---|---|---|---|---|
| ..........................................................................................................................................................AGTTGTAAAAAGGCATAGTCTTT......................................... | 23 | 3 | 3 | 0.33 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................................................................................................AGTCTTTTGGAATCTGTA.............................. | 18 | 2 | 6 | 0.17 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| ........................................................................................................................................................................GGAGTCTTTTGGAATC.................................. | 16 | 2 | 20 | 0.10 | 2 | 0 | 0 | 0 | 2 | 0 | 0 |
| .................................GGTTCTTCAAGTCTGTC........................................................................................................................................................................ | 17 | 2 | 13 | 0.08 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| ........................................CAAGTTGGGCCATGAGA................................................................................................................................................................. | 17 | 2 | 15 | 0.07 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| ................................................................................................................................................................AAAAAGTTGTAATCTTTGGAA..................................... | 21 | 3 | 16 | 0.06 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
| ..............................................................................................................................................ACCGTTACTTTAAGATGTTAA....................................................... | 21 | 3 | 16 | 0.06 | 1 | 0 | 0 | 0 | 0 | 1 | 0 |
| ........................................CAAGTTGGGCCATGAG.................................................................................................................................................................. | 16 | 2 | 20 | 0.05 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| ..................GTCGTGACGAGTTAGAGTA..................................................................................................................................................................................... | 19 | 3 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 1 |
Generated: 04/24/2015 at 10:29 AM