dsi_13521

AACTTCTTACTTAAATATGTAATGGAATTGATTTAAAACCAGGTCACCAATTTTGCTTGCAAATCGTAATACTAGACAAATTATATATGATATTAAATGCAAAAATTCAAAGCTAACGAACACCGCTATCTGCTTGGAATTTTAATGACTCAATATGTTTTATAATTTTACAAATGTAATACTTTTTTTTATCTTTACAGGCATTGAAAACAGCCCGGGGCCTGGGATTCAATCTAATCATTCCTTGATC ************************************************..........(((..(((.(((.....((((((((....(((((.....(((((((((.((((..................)))).)))))))..))....)))))....)))))))).......))).)))..))).............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	GSM343915 embryo	SRR553486 Makindu_3 day-old ovaries	M024 male body
...........................................................................................................................................................................................................TTGAAAACAGCCCGGGGCC............................	19	0	1	1.00	1	1	0	0	0
............................................................................................................AAAGCTAACGAACACCGCTAT.........................................................................................................................	21	0	1	1.00	1	0	1	0	0
...................................................................................................................................................................................GACTCTTTTTTATCTTTACTGG.................................................	22	3	2	0.50	1	0	0	1	0
........................................................................................................................GACCACTATCTGCTTGGAT...............................................................................................................	19	3	20	0.05	1	0	0	0	1

TTGAAGAATGAATTTATACATTACCTTAACTAAATTTTGGTCCAGTGGTTAAAACGAACGTTTAGCATTATGATCTGTTTAATATATACTATAATTTACGTTTTTAAGTTTCGATTGCTTGTGGCGATAGACGAACCTTAAAATTACTGAGTTATACAAAATATTAAAATGTTTACATTATGAAAAAAAATAGAAATGTCCGTAACTTTTGTCGGGCCCCGGACCCTAAGTTAGATTAGTAAGGAACTAG ************************************************..........(((..(((.(((.....((((((((....(((((.....(((((((((.((((..................)))).)))))))..))....)))))....)))))))).......))).)))..))).............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	SRR902008 ovaries	GSM343915 embryo	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries
.........................................................................................................................................................................................................................CCCGGAGCCTATGCTAGATT.............	20	3	1	2.00	2	2	0	0	0	0	0
......................................................................................................................................................................................................TCCATTACTTTTGTCGGGCCCA..............................	22	3	1	1.00	1	0	0	1	0	0	0
......................................................................................................................................................................................AAAAAAAAAAAAAATGTCGGTAACTT..........................................	26	3	2	0.50	1	0	1	0	0	0	0
.......................................................................................................................................................................................AAAAAAATATATATGTCGGTAACT...........................................	24	3	2	0.50	1	0	1	0	0	0	0
..............................................................TAGCATTATGATCGG.............................................................................................................................................................................	15	1	4	0.25	1	0	0	0	1	0	0
....................................................................................................................GCTTGTTGCGATAGAGG.....................................................................................................................	17	2	7	0.14	1	0	0	0	0	1	0
.........................................................................................................................................................................................AAAAATAGCAATGCACGTAACT...........................................	22	3	8	0.13	1	0	0	0	0	1	0
.......................................................................................................................................................................................AAAAAAATAGAATTGTGC.................................................	18	2	16	0.06	1	0	0	0	0	0	1
...........................................AGTGGTTCAAACGAA................................................................................................................................................................................................	15	1	20	0.05	1	0	0	0	0	0	1
..............................................................................................................................................................................................................TCTTGCCGGGCCCCGG............................	16	2	20	0.05	1	0	0	0	1	0	0

Species	Coordinate	ID	Alignment
droSim2	3l:20015789-20016038 +	dsi_13521	AACTTCT--------TACTTAAATATGTAATGGAA-----TTGATTTA---AAACCAGGTCAC--CAATTTTGCTTG------------------------------------------------------CAA------------------------------------------------ATCGTAATACTAGACAAAT---------T--ATATA----------------TGATATTAAATGCAAAAATTCAAAGCTAACGAACACCGCTATC-----------------------------------TGCTTGGAATTTTAAT-GAC---------------------T-CAAT----------------------ATGTTTTA-TAATTTTA------CAAATGTAATACTT--------------------------TTTTTTAT-CTTTACAGGCA--------------T---------TGA-------------A--AAC-AGCCC-GGGGCCTGGG-------------------------ATTCAATCTAA-----------TCA----TTCCT---------TGATC
droSec2	scaffold_11:341968-342225 +		AACTTCT--------TACTTAAATATGTAATGGAATACGATTGATTTA---AAACCAGGTCAC--CAATTTTGTTTG------------------------------------------------------CAA------------------------------------------------ATCGTAATACTAGACAAAT---------TTATCTTA----------------TGATATTAAATGCAAAAATTCAAAGCTAACGAGCACCACTATC-----------------------------------TGCTTGGGTTTTTAAT-GAC---------------------T-CAAT----------------------ATGTTTTA-TAATTTTA------CAAATGTAACACTT-------------------------TTTTTTTAT-CTTTATAGGCA--------------T---------TGA-------------A--AAC-AGCCC-GGGGCCTGGA-------------------------ATTCAATCTAA-----------TCA----TTCGT---------TGATC
dm3	chr3L:20447038-20447293 +		ATCATGCCTTGATCTCCCTTAA------AGGGTAA-----T-----GT---AATCCTCCGCAC--CAT--TTGAGTA------------------------------------------------------CAA------------------------------------------------ATTATTTTAATTCCCAAATTGATGACAACTTCATACCCAAATCAGAGAAATA-------------------------------------------ATGTTGAAA---TCTTTTTAACATGCATCACCATCTGAATAAAATATTGAA-AC----------------------T-TAGT-------------TT---------AT----------------------GTATAATAGTA-------------------------TTTGTATAA-TTAAACAGTC-------------------------TTTGTGTATTTTACAGAAA--TATTTCC-AGATATTGGG-------------------------ATTC---CTAT-----------TCAA---AACTG---------AAATT
droEre2	scaffold_4784:20148360-20148650 +		GACCGTG--------AT---------------------------------------------------------TAACATTTTTTATTAAGAGACTTAAGATCAATATGATCTATATCCATACTTTAGTTCTACCACTTTAAAAGGGTTTTTTTTTTCTTACTTTTTTAATACTTTTCGAAAATGT------TAAAAACAG---------TTTAATTG----------------CGATTTTTAAAGAAAAGTTTCAAAGTGTACAAGCATTTCCATC-----------------------------------TGCTA---TTTTAAAT-GAT---------------------G-CAAC----------------------AAGTCTTC-TAAATTTA------TAAATCTAATATAT-------------------------TTTATTTAT-CTTTACAGGCA--------------T---------TGC-------------A--AGC-AGCCTC-GGA------T---------------------------ATATCCAG-----------TTA----TTCCT---------GTATC
droYak3	v2_chr3L_random_037:1551-1783 +		AAGTTGT--------TACAA-GATTTA--TAGAAATAAGACAGGTTTA---AATACAAATCAA--CAATTTGGCTTC------------------------------------------------------GAAC-----------------------------------------------ACCTTTGTATTAAACACAT---------TTTTCTAG----------------TGATATTAAAAAGTAA-----CATGTGTACCGACATTGTCATC-----------------------------------TGCTTAGGTTTTTAAC-------------------------------------------------------GTCTTT-TAAATTTA------CAAACCTAATATAT-------------------------TTTATTTAT-CTTTACAGGCA--------------T---------TGA-------------A--AGC-AGATTG-GGA------T---------------------------TATACTAG-----------TCA----TTGTA---------TTATT
droEug1	scf7180000409711:5535138-5535351 -		AATTTTG--------CT---------------------------------------------------------TAACA------------------------------------------------------A------------------------------------------------CTCGAG-------------TGATGACATCTACATACCCAATGCAGAAAACTC-------------------------------------------ATGTTGAAA---AATACTTAACATGCATCACCATCTGATCGAGTTTTTTTT-AAA---------------------T-TAGTG---------------------AAGGCTAA-TATATTCA------AGAATCTAAAATTT-------------------------TTAGTTTAC-CATTGCAGGTGAATG-A------AA-----TCT-----------------TTGA--A---------------------------GTTAACCAATAATAGGAACA-----ATGC-----------TGTCTTCTT---------CGAAT
droBia1	scf7180000302193:5609263-5609401 -		T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACATGCATCACCATCTGAACAAAATATTAAA-ATCTAAT-----------------T-TTGCAGACATTAATATTATTTACTAA-------------CT-----------------TAGTT-------------------------TCTATTTATATTTAACAGGTGAAA-----------------------------------------------CTG-AA--------ATGTGTGGCCT---------------CCA-----ATGGATTGC---TTA----TCGTT---------TGGGC
droTak1	scf7180000415254:215561-215819 -		AAATATT--------CACACATATTTCTAAGGTAA-----TT--TTTAAGCAAAACAGATCATTTTACTTTTCCTTA------------------------------------------------------CAA------------------------------------------------CTCAAA-------------GGATGACATCTACATACCCAATACTGAAAAGTC-------------------------------------------ATGTTGAAA---ATTACTAAACATGCATCACCATCTGATTGAGTTTTTAAA-AAA---------------------T-TAAC----------------------TTTTGTTT-TAACTTAA------GAAATCTAAAAAAC-------------------------AGTATTAAT-ATTTACAGGTGTAAATG------CA-----ACT-----------------GCTA--TG--TCC-AGATCATGAG-------------------------GTGCA-----ATGG-----------A---ATCTT----------CAAT
droEle1	scf7180000491193:4781498-4781668 +		GAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-------------------------------------------ATGTTGAAA---AATACTTAACGTGCATCACCATCTGAATGAGATTTTAAA-GAA---------------------TTGAGC-------GACTCT-------------TTTTCCAAATTA---------AGTCTTAAATTC-------------------------TTTAATT---ATTTGCAGGTTA-----------------------TCTTTGCAGCTAACGGAAA--TG--ACG-AAAGATTGAG-------------------------ATGTATTCTAGCAG-----------A---ATCTT---------CGATC
droRho1	scf7180000769696:65764-65924 +		ATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTTGAAA---AATACTTAACATGCATCACCATCTGAATGAGTTTTTAAG-GAA---------------------C-AAAC----------------------GTGTCTTT-CAAATTAAAATTCTTAAATG-----------------------------------TAATTAT-CTTTGCAGGTGAATA-AACTTTTCA-----AAT-----------------GCAA--TG--ACT-GAAGCTTTA-----------------------------TAACCTAGTAG-----------A---TTGTT---------CGATC
droFic1	scf7180000454113:1876872-1877049 -		ATA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCAATGCAGAAATATT-------------------------------------------ATGTTGAAA---TTTACTTAACATGCATCACCATCTGATTACTATTTTGAAAGAA---------------------A-AAGT-------GTGT-----------GTGCCTTT-CCATTTAA------AAAATCTAAAACAG-------------------------TTATTTT---TATTACAGGTGACCTTG------AA-----TCG-----------------GCAA--A---------GTCTTGAA-------------------------ATGATTTGAAGAAA-----------T---TTCTT---------CGGGC
droKik1	scf7180000302441:3173884-3174047 +		GAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-------------------------------------------ATGTTGAAA---AATATTTAACATGCATCACCATCTGATTCAGTTTTTAAA-GAA---------------------T----------------------------------T-TAAATTAA--------------AAACAGTTATCACAGAGTATTTTATAAATATTTGGTTTAT-GTTTACAGAAGGAA-------------------------------------A--AGT-GCCCT-CTAGCAAATG-------------------------A-----------GGAATCCTGGTCT----GGAAT---------TGGCT
droAna3	scaffold_13337:10816283-10816437 +		GAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-------------------------------------------ATGTTGAAA---AATACTTAACATGCATCACCATCTGATTACTTAGTTAAA-AACCACATTGAAAATCTTGTAAG-A-AAGT-------------TT---TT----------------------------AAAAGATACTT-------------------------TTGTTTTAT-ATTTACAGTTTG-----------------------------------------------------GAG-------AACTATGGAGT---------------CCA-----ATAAA--------------ACCCATTGAA----TGTAC
droBip1	scf7180000396569:563495-563575 -		AATTTTA--------TA---------------------------------------------------------AAACA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTA-------------------------CTCTTTTAT-ATTTGCAGATT-------------------------GG-------------A--GAA-AAATC-------------------GAGT---------------CCA-----ATTAC--------------GCCCCTTGAATGTACTGCC
dp5	XR_group8:7866591-7866720 +		T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACATGCATCACCATCTGATCACATAATTCAT-AAA-----GCAAACTCT------TATATAA-------GAGAACTGTGATTAA-------------------------AA-----CCTCA-------------------------TCTTTTTATATATTACAGGCA--------------A---------TATT------------A--AGC-GCTTAC-GAA------A---------------------------GAAATTGG-----------TCT----GTCC--------------A
droPer2	scaffold_40:55957-56109 +		A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGAAA---TCCTATTAACATGCATCACCATCTGATATAATCGGCCAT-TAT-----TTAAAATGT------ATTAAGT-------GTTTGCGTTTATTAA-------------TT-----------------TGCTC-------------------------TTATTTTATATTTTACAGGCT-------------------------GC-------------G--TGT-TAGCTG-GAG-------AAGTAC-GATC---------------TCA-----ATGGA--------------TCCCT---------TCGTC
droMoj3	scaffold_6680:12336821-12336989 +		ATTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGATATTGATTGCACGCCATGCACTACCATCTGATTATAATATAAAA-AAA-----A---------------C-TAGC-------TCTTTT-------------ATTTGCAAATCGG------CAAATCTAATTGAT-------------GTAAATT-----TACTTTTAG-TCCTGTACGCA--------------TTTAATTGTCCGA-------------G--AGC-AAGCTG-GAA------A---------------------------AAAGGCGG-----------GCA----TTC-----------GAACC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

AACTTCT--------TACTTAAATATGTAATGGAA-----TTGATTTA---AAACCAGGTCAC--CAATTTTGCTTG------------------------------------------------------CAA------------------------------------------------ATCGTAATACTAGACAAAT---------T--ATATA----------------TGATATTAAATGCAAAAATTCAAAGCTAACGAACACCGCTATC-----------------------------------TGCTTGGAATTTTAAT-GAC---------------------T-CAAT----------------------ATGTTTTA-TAATTTTA------CAAATGTAATACTT--------------------------TTTTTTAT-CTTTACAGGCA--------------T---------TGA-------------A--AAC-AGCCC-GGGGCCTGGG-------------------------ATTCAATCTAA-----------TCA----TTCCT---------TGATC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---------TGA-------------A--AAC-AGCCC-GGGGCC.............................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................AAAGCTAACGAACACCGCTAT....................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0

droSec2

AACTTCT--------TACTTAAATATGTAATGGAATACGATTGATTTA---AAACCAGGTCAC--CAATTTTGTTTG------------------------------------------------------CAA------------------------------------------------ATCGTAATACTAGACAAAT---------TTATCTTA----------------TGATATTAAATGCAAAAATTCAAAGCTAACGAGCACCACTATC-----------------------------------TGCTTGGGTTTTTAAT-GAC---------------------T-CAAT----------------------ATGTTTTA-TAATTTTA------CAAATGTAACACTT-------------------------TTTTTTTAT-CTTTATAGGCA--------------T---------TGA-------------A--AAC-AGCCC-GGGGCCTGGA-------------------------ATTCAATCTAA-----------TCA----TTCGT---------TGATC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

dm3

ATCATGCCTTGATCTCCCTTAA------AGGGTAA-----T-----GT---AATCCTCCGCAC--CAT--TTGAGTA------------------------------------------------------CAA------------------------------------------------ATTATTTTAATTCCCAAATTGATGACAACTTCATACCCAAATCAGAGAAATA-------------------------------------------ATGTTGAAA---TCTTTTTAACATGCATCACCATCTGAATAAAATATTGAA-AC----------------------T-TAGT-------------TT---------AT----------------------GTATAATAGTA-------------------------TTTGTATAA-TTAAACAGTC-------------------------TTTGTGTATTTTACAGAAA--TATTTCC-AGATATTGGG-------------------------ATTC---CTAT-----------TCAA---AACTG---------AAATT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...........................................................................................................................................................................................................................................................................................................ATGCATCACCATCTGAAT...........................................................................................................................................................................................................................................................................................	18	2	337.50	675	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	1	0	6	0	0	0	0	0	0	1	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45	46	30	56	1	0	0	0	0	0	4	1	0	0	0	0	0	0	1	0	0	2	0	1	1	2	1	7	8	15	7	0	1	0	0	0	0	1	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	16	1	1	2	2	1	0	0	0	1	0	0	0	0	0	3	0	0	0	0	0	2	3	0	5	0	0	0	6	0	2	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	2	3	14	1	9	0	10	25	20	161	3	19	3	29	4	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	3	1	2	0	0	0	0	0	0	0	1	9	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	5	1	0	34
....................................................................................................................................................................................................CAAATTGATGACAACTTCA.................................................................................................................................................................................................................................................................................................................................................................................................	19	1	142.00	142	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	1	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	4	7	3	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	2	0	0	0	0	2	0	2	6	1	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	10	0	0	0	0	10	0	1	0	0	0	0	2	0	1	0	1	0	0	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	10	24	0	2	1	6	4	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	1	0	0	2	0	0	0	0	0	0	0	0	5	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0
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..................................................................................................................................................................................................................................GAGAAATA-------------------------------------------ATGTTGAAA---TC.....................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................AA-----T-----GT---AATCCTCCGCAC--CAT--TTGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................CAAATTGATGACAACTTCATACCCGCG.........................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTCC-AGATATTGGG-------------------------ATTC---CTAT-----------T.........................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................CTTCATACCCAAATCAGAGA..................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................AAATCAGAGAAATA-------------------------------------------ATGTTGAAA---TCG....................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CC-AGATATTGGG-------------------------ATTC---CTAT-----------TCAA---AAC................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................CTTCATACCCAAATCAGA....................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................CAGAGAAATA-------------------------------------------ATGTTGAA...........................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

GACCGTG--------AT---------------------------------------------------------TAACATTTTTTATTAAGAGACTTAAGATCAATATGATCTATATCCATACTTTAGTTCTACCACTTTAAAAGGGTTTTTTTTTTCTTACTTTTTTAATACTTTTCGAAAATGT------TAAAAACAG---------TTTAATTG----------------CGATTTTTAAAGAAAAGTTTCAAAGTGTACAAGCATTTCCATC-----------------------------------TGCTA---TTTTAAAT-GAT---------------------G-CAAC----------------------AAGTCTTC-TAAATTTA------TAAATCTAATATAT-------------------------TTTATTTAT-CTTTACAGGCA--------------T---------TGC-------------A--AGC-AGCCTC-GGA------T---------------------------ATATCCAG-----------TTA----TTCCT---------GTATC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

droYak3

AAGTTGT--------TACAA-GATTTA--TAGAAATAAGACAGGTTTA---AATACAAATCAA--CAATTTGGCTTC------------------------------------------------------GAAC-----------------------------------------------ACCTTTGTATTAAACACAT---------TTTTCTAG----------------TGATATTAAAAAGTAA-----CATGTGTACCGACATTGTCATC-----------------------------------TGCTTAGGTTTTTAAC-------------------------------------------------------GTCTTT-TAAATTTA------CAAACCTAATATAT-------------------------TTTATTTAT-CTTTACAGGCA--------------T---------TGA-------------A--AGC-AGATTG-GGA------T---------------------------TATACTAG-----------TCA----TTGTA---------TTATT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.....................................................................................................................................................................................................................................................................TACCGACATTGTCATC-----------------------------------TGCT............................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0

droEug1

AATTTTG--------CT---------------------------------------------------------TAACA------------------------------------------------------A------------------------------------------------CTCGAG-------------TGATGACATCTACATACCCAATGCAGAAAACTC-------------------------------------------ATGTTGAAA---AATACTTAACATGCATCACCATCTGATCGAGTTTTTTTT-AAA---------------------T-TAGTG---------------------AAGGCTAA-TATATTCA------AGAATCTAAAATTT-------------------------TTAGTTTAC-CATTGCAGGTGAATG-A------AA-----TCT-----------------TTGA--A---------------------------GTTAACCAATAATAGGAACA-----ATGC-----------TGTCTTCTT---------CGAAT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACATGCATCACCATCTGAACAAAATATTAAA-ATCTAAT-----------------T-TTGCAGACATTAATATTATTTACTAA-------------CT-----------------TAGTT-------------------------TCTATTTATATTTAACAGGTGAAA-----------------------------------------------CTG-AA--------ATGTGTGGCCT---------------CCA-----ATGGATTGC---TTA----TCGTT---------TGGGC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AAATATT--------CACACATATTTCTAAGGTAA-----TT--TTTAAGCAAAACAGATCATTTTACTTTTCCTTA------------------------------------------------------CAA------------------------------------------------CTCAAA-------------GGATGACATCTACATACCCAATACTGAAAAGTC-------------------------------------------ATGTTGAAA---ATTACTAAACATGCATCACCATCTGATTGAGTTTTTAAA-AAA---------------------T-TAAC----------------------TTTTGTTT-TAACTTAA------GAAATCTAAAAAAC-------------------------AGTATTAAT-ATTTACAGGTGTAAATG------CA-----ACT-----------------GCTA--TG--TCC-AGATCATGAG-------------------------GTGCA-----ATGG-----------A---ATCTT----------CAAT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-------------------------------------------ATGTTGAAA---AATACTTAACGTGCATCACCATCTGAATGAGATTTTAAA-GAA---------------------TTGAGC-------GACTCT-------------TTTTCCAAATTA---------AGTCTTAAATTC-------------------------TTTAATT---ATTTGCAGGTTA-----------------------TCTTTGCAGCTAACGGAAA--TG--ACG-AAAGATTGAG-------------------------ATGTATTCTAGCAG-----------A---ATCTT---------CGATC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTTGAAA---AATACTTAACATGCATCACCATCTGAATGAGTTTTTAAG-GAA---------------------C-AAAC----------------------GTGTCTTT-CAAATTAAAATTCTTAAATG-----------------------------------TAATTAT-CTTTGCAGGTGAATA-AACTTTTCA-----AAT-----------------GCAA--TG--ACT-GAAGCTTTA-----------------------------TAACCTAGTAG-----------A---TTGTT---------CGATC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

ATA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCAATGCAGAAATATT-------------------------------------------ATGTTGAAA---TTTACTTAACATGCATCACCATCTGATTACTATTTTGAAAGAA---------------------A-AAGT-------GTGT-----------GTGCCTTT-CCATTTAA------AAAATCTAAAACAG-------------------------TTATTTT---TATTACAGGTGACCTTG------AA-----TCG-----------------GCAA--A---------GTCTTGAA-------------------------ATGATTTGAAGAAA-----------T---TTCTT---------CGGGC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-------------------------------------------ATGTTGAAA---AATATTTAACATGCATCACCATCTGATTCAGTTTTTAAA-GAA---------------------T----------------------------------T-TAAATTAA--------------AAACAGTTATCACAGAGTATTTTATAAATATTTGGTTTAT-GTTTACAGAAGGAA-------------------------------------A--AGT-GCCCT-CTAGCAAATG-------------------------A-----------GGAATCCTGGTCT----GGAAT---------TGGCT	Size	Hit Count	Total Norm	Total
No Reads

droAna3

GAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-------------------------------------------ATGTTGAAA---AATACTTAACATGCATCACCATCTGATTACTTAGTTAAA-AACCACATTGAAAATCTTGTAAG-A-AAGT-------------TT---TT----------------------------AAAAGATACTT-------------------------TTGTTTTAT-ATTTACAGTTTG-----------------------------------------------------GAG-------AACTATGGAGT---------------CCA-----ATAAA--------------ACCCATTGAA----TGTAC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
........................................................................................................................................................................................................................................................................................................AACATGCATCACCATCTGATT...........................................................................................................................................................................................................................................................................................	21	1	49.00	49	39	7	1	0	0	2
......................................................................................................................................................................................................................................................................................................TTAACATGCATCACCATCTGATT...........................................................................................................................................................................................................................................................................................	23	1	21.00	21	16	1	0	0	0	4
..................................................................................................................................................................................................................................................................................................ATACTTAACATGCATCACCATCTGATT...........................................................................................................................................................................................................................................................................................	27	1	20.00	20	9	8	0	0	0	3
.......................................................................................................................................................................................................................................................................................................TAACATGCATCACCATCTGATT...........................................................................................................................................................................................................................................................................................	22	1	18.00	18	13	2	0	0	0	3
....................................................................................................................................................................................................................................................................................................ACTTAACATGCATCACCATCTGATT...........................................................................................................................................................................................................................................................................................	25	1	14.00	14	5	4	0	0	0	5
.........................................................................................................................................................................................................................................................................................................ACATGCATCACCATCTGATT...........................................................................................................................................................................................................................................................................................	20	1	14.00	14	11	3	0	0	0	0
...........................................................................................................................................................................................................................................................................................................ATGCATCACCATCTGATT...........................................................................................................................................................................................................................................................................................	18	1	13.00	13	2	11	0	0	0	0
.....................................................................................................................................................................................................................................................................................................CTTAACATGCATCACCATCTGATT...........................................................................................................................................................................................................................................................................................	24	1	13.00	13	6	0	0	0	0	7
..........................................................................................................................................................................................................................................................................................................CATGCATCACCATCTGATT...........................................................................................................................................................................................................................................................................................	19	1	12.00	12	8	2	1	0	0	1
...................................................................................................................................................................................................................................................................................................TACTTAACATGCATCACCATCTGATT...........................................................................................................................................................................................................................................................................................	26	1	9.00	9	8	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................AATACTTAACATGCATCACCATCTGATT...........................................................................................................................................................................................................................................................................................	28	1	9.00	9	8	0	0	0	0	1
..................................................................................................................................................................................................................................................................................................ATACTTAACATGCATCACCATC................................................................................................................................................................................................................................................................................................	22	1	6.00	6	2	3	1	0	0	0
.............................................................................................................................................................................................................................................................................................A---AATACTTAACATGCATCACCATCTGATT...........................................................................................................................................................................................................................................................................................	29	1	5.00	5	3	2	0	0	0	0
.........................................................................................................................................................................................................................................................................................................ACATGCATCACCATCTGATTA..........................................................................................................................................................................................................................................................................................	21	1	3.00	3	2	0	0	0	0	1
.........................................................................................................................................................................................................................................................................................TGAAA---AATACTTAACATGCATCAC....................................................................................................................................................................................................................................................................................................	24	1	3.00	3	0	3	0	0	0	0
..................................................................................................................................................................................................................................................................................................ATACTTAACATGCATCACC...................................................................................................................................................................................................................................................................................................	19	1	3.00	3	0	3	0	0	0	0
.........................................................................................................................................................................................................................................................................................TGAAA---AATACTTAACATGCATCACC...................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	2	0	0	0	0
.......................................................................................................................................................................................................................................................................................GTTGAAA---AATACTTAACATGCATCAC....................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	2	0	0	0	0
.........................................................................................................................................................................................................................................................................................................ACATGCATCACCATCTGATC...........................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0
.......................................................................................................................................................................................................................................................................................GTTGAAA---AATACTTAACATGCATCACC...................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	2	0	0	0	0
........................................................................................................................................................................................................................................................................................................AACATGCATCACCATCTGATC...........................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	2	0	0	0	0
.................................................................................................................................................................................................................................................................................................AATACTTAACATGCATCACCATCTG..............................................................................................................................................................................................................................................................................................	25	1	2.00	2	2	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................ATGCATCACCATCTGATC...........................................................................................................................................................................................................................................................................................	18	2	1.50	3	0	3	0	0	0	0
..........................................................................................................................................................................................................................................................................................GAAA---AATACTTAACATGCATCAC....................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................AATACTTAACATGCATCACCATCTGA.............................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................AACATGCATCACCATCTGATTA..........................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................ATACTTAACATGCATCACCATCTG..............................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................ATACTTAACATGCATCACCATCT...............................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0
............................................................................................................................................................................................................................................................................................AA---AATACTTAACATGCATCACCATC................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................CTTAACATGCATCACCATCT...............................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................AA---AATACTTAACATGCATC......................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................GAAA---AATACTTAACATGCATCACCATC................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................TAACATGCATCACCATCTGATTA..........................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................TACTTAACATGCATCACCATCTGAT............................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................GAAA---AATACTTAACATGCATCACCATCTG..............................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................AA---AATACTTAACATGCATCACC...................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................TACTTAACATGCATCACCATCT...............................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................TGTTGAAA---AATACTTAACATGCATCAC....................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................ATACTTAACATGCATCACCATCTGATC...........................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................ATACTTAACATGCATCACCATCTGATTA..........................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................CTTAACATGCATCACCATCTGA.............................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................GAAA---AATACTTAACATGCATCACCATCT...............................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................TTAACATGCATCACCATCTGA.............................................................................................................................................................................................................................................................................................	21	4	0.75	3	2	0	0	0	0	1
......................................................................................................................................................................................................................................................................................................TTAACATGCATCACCATCTG..............................................................................................................................................................................................................................................................................................	20	4	0.50	2	2	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................CATGCATCACCATCTGATC...........................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................TAACATGCATCACCATCTG..............................................................................................................................................................................................................................................................................................	19	4	0.25	1	1	0	0	0	0	0

droBip1

AATTTTA--------TA---------------------------------------------------------AAACA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTA-------------------------CTCTTTTAT-ATTTGCAGATT-------------------------GG-------------A--GAA-AAATC-------------------GAGT---------------CCA-----ATTAC--------------GCCCCTTGAATGTACTGCC	Size	Hit Count	Total Norm	Total
No Reads

dp5

T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACATGCATCACCATCTGATCACATAATTCAT-AAA-----GCAAACTCT------TATATAA-------GAGAACTGTGATTAA-------------------------AA-----CCTCA-------------------------TCTTTTTATATATTACAGGCA--------------A---------TATT------------A--AGC-GCTTAC-GAA------A---------------------------GAAATTGG-----------TCT----GTCC--------------A	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...........................................................................................................................................................................................................................................................................................................ATGCATCACCATCTGATC...........................................................................................................................................................................................................................................................................................	18	2	16.00	32	0	25	6	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................ACATGCATCACCATCTGATC...........................................................................................................................................................................................................................................................................................	20	2	10.00	20	0	12	7	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................CATGCATCACCATCTGATC...........................................................................................................................................................................................................................................................................................	19	2	6.50	13	0	10	2	0	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................AACATGCATCACCATCTGATC...........................................................................................................................................................................................................................................................................................	21	2	5.00	10	0	5	4	1	0	0	0	0	0	0
T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACATGCATCACCATCTGATC...........................................................................................................................................................................................................................................................................................	22	2	3.50	7	0	3	3	0	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................ATGCATCACCATCTGATT...........................................................................................................................................................................................................................................................................................	18	6	0.33	2	0	2	0	0	0	0	0	0	0	0

droPer2

A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGAAA---TCCTATTAACATGCATCACCATCTGATATAATCGGCCAT-TAT-----TTAAAATGT------ATTAAGT-------GTTTGCGTTTATTAA-------------TT-----------------TGCTC-------------------------TTATTTTATATTTTACAGGCT-------------------------GC-------------G--TGT-TAGCTG-GAG-------AAGTAC-GATC---------------TCA-----ATGGA--------------TCCCT---------TCGTC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..........................................................................................................................................................................................................................................................................................................CATGCATCACCATCTGATA...........................................................................................................................................................................................................................................................................................	19	4	7.25	29	0	25	4	0	0	0
...........................................................................................................................................................................................................................................................................................................ATGCATCACCATCTGATA...........................................................................................................................................................................................................................................................................................	18	4	6.00	24	6	15	3	0	0	0
.....................................................................................................................................................................................................................................................................................................ATTAACATGCATCACCATCTGATA...........................................................................................................................................................................................................................................................................................	24	3	4.67	14	10	3	1	0	0	0
........................................................................................................................................................................................................................................................................................................AACATGCATCACCATCTGATA...........................................................................................................................................................................................................................................................................................	21	4	3.00	12	1	9	1	0	1	0
.........................................................................................................................................................................................................................................................................................................ACATGCATCACCATCTGATA...........................................................................................................................................................................................................................................................................................	20	4	3.00	12	3	8	1	0	0	0
.......................................................................................................................................................................................................................................................................................................TAACATGCATCACCATCTGATA...........................................................................................................................................................................................................................................................................................	22	4	2.25	9	4	5	0	0	0	0
.............................................................................................................................................................................................................................................................................................A---TCCTATTAACATGCATCACCATCTGATA...........................................................................................................................................................................................................................................................................................	29	3	1.67	5	4	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................ATGCATCACCATCTGATATAATCGGCC..................................................................................................................................................................................................................................................................................	27	2	1.50	3	3	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT-TAGCTG-GAG-------AAGTAC-GATC---------------TC............................................	23	3	1.33	4	4	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................TTAACATGCATCACCATCTGATA...........................................................................................................................................................................................................................................................................................	23	4	1.25	5	0	3	2	0	0	0
....................................................................................................................................................................................................................................................................................................................CATCTGATATAATCGGCC..................................................................................................................................................................................................................................................................................	18	2	1.00	2	2	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................CTATTAACATGCATCACCATCTGATA...........................................................................................................................................................................................................................................................................................	26	3	1.00	3	0	1	1	1	0	0
....................................................................................................................................................................................................................................................................................................TATTAACATGCATCACCATCTGATA...........................................................................................................................................................................................................................................................................................	25	3	0.67	2	2	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTG-GAG-------AAGTAC-GATC---------------TC............................................	18	3	0.67	2	2	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................ATCACCATCTGATATAATCGGCC..................................................................................................................................................................................................................................................................................	23	2	0.50	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAC-GATC---------------TCA-----ATGGA--------------TCCCT---------TCGTC	25	2	0.50	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................A---TCCTATTAACATGCATCACCATCTG..............................................................................................................................................................................................................................................................................................	26	4	0.50	2	2	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAG-------AAGTAC-GATC---------------TCA-----ATGGA--------------T..................	22	2	0.50	1	0	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................TTAACATGCATCACCATCTG..............................................................................................................................................................................................................................................................................................	20	7	0.43	3	3	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................CCTATTAACATGCATCACCATCTGATA...........................................................................................................................................................................................................................................................................................	27	3	0.33	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................ATTAACATGCATCACCATCTG..............................................................................................................................................................................................................................................................................................	21	4	0.25	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................AA---TCCTATTAACATGCATCACCATCTG..............................................................................................................................................................................................................................................................................................	27	4	0.25	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................TTAACATGCATCACCATCTGATT...........................................................................................................................................................................................................................................................................................	23	6	0.17	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................AACATGCATCACCATCTGATAA..........................................................................................................................................................................................................................................................................................	22	6	0.17	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................AACATGCATCACCATCTG..............................................................................................................................................................................................................................................................................................	18	7	0.14	1	1	0	0	0	0	0

droMoj3

ATTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGATATTGATTGCACGCCATGCACTACCATCTGATTATAATATAAAA-AAA-----A---------------C-TAGC-------TCTTTT-------------ATTTGCAAATCGG------CAAATCTAATTGAT-------------GTAAATT-----TACTTTTAG-TCCTGTACGCA--------------TTTAATTGTCCGA-------------G--AGC-AAGCTG-GAA------A---------------------------AAAGGCGG-----------GCA----TTC-----------GAACC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..........................................................................................................................................................................................................................................................................................................CATGCACTACCATCTGATT...........................................................................................................................................................................................................................................................................................	19	1	16.00	16	2	0	0	0	14	0
...........................................................................................................................................................................................................................................................................................................ATGCACTACCATCTGATT...........................................................................................................................................................................................................................................................................................	18	2	14.50	29	28	0	0	0	1	0
ATTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGATATTGATTGCA.................................................................................................................................................................................................................................................................................................................	21	1	11.00	11	11	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................ATTGATTGCACGCCATGCA........................................................................................................................................................................................................................................................................................................	19	1	4.00	4	4	0	0	0	0	0
ATTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGATATTGATTG...................................................................................................................................................................................................................................................................................................................	19	1	4.00	4	4	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................TTGATTGCACGCCATGCACTAC....................................................................................................................................................................................................................................................................................................	22	1	3.00	3	3	0	0	0	0	0
.TTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGATATTGATTGCA.................................................................................................................................................................................................................................................................................................................	20	1	3.00	3	3	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................ATTGCACGCCATGCACTACCATCTGATT...........................................................................................................................................................................................................................................................................................	28	1	2.00	2	2	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................CGCCATGCACTACCATCTGATT...........................................................................................................................................................................................................................................................................................	22	1	2.00	2	2	0	0	0	0	0
ATTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGATATTGATTGC..................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	2	0	0	0	0	0
...A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGATATTGATTGCACGCC.............................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................ATTGATTGCACGCCATGCAC.......................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
ATTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGATATTGATTGCACGCC.............................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-GAA------A---------------------------AAAGGCGG-----------GCA----TTC-----------GAA..	22	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................ATTGATTGCACGCCATGCACTACC...................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................ATATTGATTGCACGCCATGCACTAC....................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................ATTGATTGCACGCCATGCACT......................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................GATTGCACGCCATGCACTAC....................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTCCGA-------------G--AGC-AAGCTG-GAA------A---------------------------AA...........................................	24	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGA-------------G--AGC-AAGCTG-GAA------A---------------------------AAAGGCGG-----------..........................	27	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................GTTGATATTGATTGCACGCCAT...........................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................GATATTGATTGCACGCCATGC.........................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................ATTGCACGCCATGCACTACC...................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................GCACGCCATGCACTACCATCTGATT...........................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................ATATTGATTGCACGCCAT...........................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................TGATTGCACGCCATGCACTACC...................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................CACGCCATGCACTACCATCTGATT...........................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................ACGCCATGCACTACCATCTGATT...........................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0
.TTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGATATTGATTGCACG...............................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.TTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGATATTGATTGCACGCCA............................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
ATTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGATATTGATTGCACGCCATG..........................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
.TTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGATATTGATTG...................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
ATTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGATATTGATTGCACGC..............................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................CCATGCACTACCATCTGATT...........................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................TGCACGCCATGCACTACCATCTGATT...........................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
.............................................................................................................................................................................................................................................................................................ATTGATTGCACGCCATGCACTAC....................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0

dsi_13521

3l:20015839-20015988 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-14.3	-14.3	-14.3