dsi_13517

Name	Class	Family	Strand
(CA)n	Simple_repeat	Simple_repeat	+

AAGTATACGAAATACGCGAATTTCGGAAACTAGAAAATCAATCTTTTAAGGTAGTTTATTCATCTCGCTCTCTCACTCTCCTCTGTGTGCGTGCGTGAGTGTGTGTGTGTGTAAAGGCCAAAGAGTGCCCTTCGCCTCCCCGGCCACGCCCCCTTGGGCGGAATAATAAATTGGGAAAGAGAATATATATCTTGCTCCTTTAGAATTTACCTGTGAAAGTGAAAACGTGACAACACGATAAAACGGACGAAGCAAGCAAAACAAAAAAC ************************************************....(((((.(((..(((...(((((..................)))))...))).))).)))))((((...(((.((.....)))))...)))).(((((....)))))......((((((((((..((((.......))))..))))....))))))..........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553485 Chicharo_3 day-old ovaries	M024 male body	M053 female body	SRR618934 dsim w501 ovaries	M023 head	M025 embryo	O001 Testis	SRR902009 testis	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs
..............................................................................................................................................................................................................................................TAAAACGGACGAAGCAAGCAAAACAAAAAA.	30	0	1	3.00	3	3	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................AAAACGGACGAAGCAAGC............	18	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................TAAAGGCCAAAGAGTGCCCCTCGCC.....................................................................................................................................	25	1	1	1.00	1	0	0	0	1	0	0	0	0	0	0
..................................................................................CTGTGTGCGTGCGTGAGTGTGT.....................................................................................................................................................................	22	0	1	1.00	1	0	0	0	0	0	0	1	0	0	0
...............................................................................................................................................................................................................TACCTGTGAAAGTGAAAACGTGACAAC...................................	27	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................TTCGGAAACTAGAAAATCAATCT.................................................................................................................................................................................................................................	23	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................AACACGATAAAACGGACGAAGCAAGC............	26	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0
...................ATTTCGGAAACTAGAAAATCAATCTT................................................................................................................................................................................................................................	26	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.........................................................................................................TGTGTGTAAAGGCCAAAGAGTGCCCTTC........................................................................................................................................	28	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0
........GAAATACGCGAATTTCGGAAACTAG............................................................................................................................................................................................................................................	25	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..................AATTTCGGAAACTAGAAAATC......................................................................................................................................................................................................................................	21	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...........................................................................................................................................................................................................AACTTACCTGTGAAA...................................................	15	1	9	0.22	2	2	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................AAAACGTGGCATCACAATAAAA..........................	22	3	5	0.20	1	0	0	0	0	0	0	0	1	0	0
..................................................................................................................................................................ATAGTAAATTGGGAAA...........................................................................................	16	1	10	0.10	1	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................TTTACCGCTGAAAGTGAATA............................................	20	3	16	0.06	1	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................AAAACGGACGAGGCA...............	15	1	17	0.06	1	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................ATAGTAAATTGGGAA............................................................................................	15	1	20	0.05	1	1	0	0	0	0	0	0	0	0	0
................................................AGGTAGTTGGTTCATC.............................................................................................................................................................................................................	16	2	20	0.05	1	0	0	0	0	0	0	0	0	0	1
....................................ATGACTCTTTTAAGGTA........................................................................................................................................................................................................................	17	2	20	0.05	1	0	0	0	0	0	0	0	0	1	0
.........................................................ATTCATCTCGTTCTC.....................................................................................................................................................................................................	15	1	20	0.05	1	0	0	0	0	0	0	0	0	1	0
....................................................................................................GTGTTTGGGTGTAAAGCCC......................................................................................................................................................	19	3	20	0.05	1	0	1	0	0	0	0	0	0	0	0

TTCATATGCTTTATGCGCTTAAAGCCTTTGATCTTTTAGTTAGAAAATTCCATCAAATAAGTAGAGCGAGAGAGTGAGAGGAGACACACGCACGCACTCACACACACACACATTTCCGGTTTCTCACGGGAAGCGGAGGGGCCGGTGCGGGGGAACCCGCCTTATTATTTAACCCTTTCTCTTATATATAGAACGAGGAAATCTTAAATGGACACTTTCACTTTTGCACTGTTGTGCTATTTTGCCTGCTTCGTTCGTTTTGTTTTTTG ************************************************....(((((.(((..(((...(((((..................)))))...))).))).)))))((((...(((.((.....)))))...)))).(((((....)))))......((((((((((..((((.......))))..))))....))))))..........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	GSM343915 embryo	SRR618934 dsim w501 ovaries	SRR902009 testis	SRR553488 RT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries
...............................................................................................................................................................................................................................................TGTTGCCTGCATCATTCGTTTT........	22	3	2	1.00	2	2	0	0	0	0	0	0
.....................AAGGCTTTGATGTTTTTGTTAG..................................................................................................................................................................................................................................	22	3	3	0.67	2	0	2	0	0	0	0	0
...........................................................................................................................................................................ACCATTTCTCTTATGGATAGA.............................................................................	21	3	2	0.50	1	0	0	1	0	0	0	0
......................................................................................................................................GGAGGGGCCGGCGCG........................................................................................................................	15	1	4	0.25	1	0	0	0	1	0	0	0
..............................................................................................................................AGGGAAGCGGAGGGG................................................................................................................................	15	1	20	0.15	3	1	1	0	0	0	0	1
...............................................................GAGCGCGAGAGGGAGAGGAGA.........................................................................................................................................................................................	21	2	8	0.13	1	0	0	0	0	1	0	0
........................................................................................................................................................................................TATATAGACCGAGGATGTC..................................................................	19	3	16	0.06	1	0	0	1	0	0	0	0
..............GCGCTTCAAGACTTTGGTC............................................................................................................................................................................................................................................	19	3	17	0.06	1	0	0	0	0	0	1	0
.....................................................................................................................................CGGAGGGGCCCGCGCGGC......................................................................................................................	18	3	20	0.05	1	0	0	0	1	0	0	0

Species	Coordinate	ID	Alignment
droSim2	2l:20364074-20364342 -	dsi_13517	AAGTATACGAAATACGCGAATTTCGGAA--ACTAGAA---AAT---CAATC--------------TTTTAAGGTAGTTTAT--------TCATCTCGCTCT----CTCACTCT---------CCTCTGTGTGCG-----------TGCGTGAGTGTGTGTGTGTGTAAAGGCCAAAGAGTG-CCCTTC-G--CCTC--CCC--GG--CCACGCCCCCT-TG-----------------G----GCGGAATAA-TAAAT-------TGGG----AAAG-----AGAAT----ATATATCTT---G--CTCCTTTAGAATTTACCTGTGAAAGTGAAAACGTGACAACACGATAA--------AACGGACGAAGCAAGCAAAACAAAAAAC--------
droSec2	scaffold_18:850836-851106 -		AAGTATACGAAATACGGCAATTTTGGAA--ACTAGAA---AAT---CAATC--------------TTTTAAGGTAGTTTAT-A-TAT--CCATCTCGCTCT----CTCACTCT---------CCTCTGTGTGCA-----------TGCGTGA--GTGTGTGTGTGTAAAGGCCAAAGAGTG-CCCTTC-G--CCTC--CCC--GG--CCACGCCCCCT-TG-----------------G----GCGGAATAA-TAAAT-------TGGG----AAAG-----AGAAT----ATATATCTT---G--CTCCTTTAGAATTTACCTGTGAAAGTGAAAACGTGACAACACGATAA--------AACGGACGAAGCAAGCAAAACAAATAAC--------
dm3	chr2L:20917055-20917323 -		AAATATACGAAATACGCGAATTTCGGAA--ACTAGAA---AAT---CCATC--------------TTTTAAGGTAGTTTAT-T-TAT--CCATCTCGCTTT----TTCACTCT---------CCTCTGTGTGCG-----------TGCGT----GAGTGTGTGTGTAAAGGCCAAATAGTG-CCCTTC-G--CCTC--CCC--GG--CCACGCCCCCT-TG-----------------G----GCAGAGTAA-TAAAA-------TGGG----AAAG-----AGAAT----ATATATCTT---G--CTCCTTTAGAATTTACCTGTGAAAGTGAAAACGTGACAACACGATAA--------AACGGACGAAGCAAGCAAAACAAAAAAC--------
droEre2	scaffold_4845:3549580-3549841 +		AAATATACGAAATACGTGAATTTCCGAA--ACTAGAAGAAAAT---CTATC--------------TTCTAAGGTAGTTTAA-T-TATACCCATCTCGCTCT----CTCACTCA------------CTGTGTACG-----------TGCGT----GAGTGTGTGTGTAAAGGCCAAAGAGTG-CCCTTC-G--CCTC--CCT--GG--CCACGCCCCCT-AA-----------------G----GCAGAATAA-TAAAT-------TTGGA--A-AAA-----AAAAT----ATA---------------TTATAGAATTTACATGTGAAAGTGAAAACGTGACAACACGATAA--------AACGGACGAAGCAAGCAAAACAAAACAC--------
droYak3	2R:1833712-1833965 +		AAATATACGAAAACAGTGAATTTTGGAA--ACGAGA----AAT---CAATC--------------TTCTAAGGTAGTTGA-----------ATTTTGCTCT----CTCACACT---------T--CTTTGTGCG-----------TGCGT----GAGTGTGTGTGTAAAGGACAAAGATTG-TCCTTC-G--TCTC--CCA-AGA--CCACGCCTCCG-TT-----------------G----GCAGAATAA-TAAAT-------TGGG----AAAA-----TGAAT----ATATGT-----------CGTTTAGAATTTACCTATGAAAGTGAAAACGTGACAACACGATAA--------AACGGACGAAGCAAGCAAAACAAAAAAC--------
droEug1	scf7180000409767:386762-387039 +		AAGTATAAAAAATAAACGATATTCCGAA--ATTACAATA---AATACTTACATATAACGATTCGCTGG-AGGGTAATTGTT----CT--CCTTCTCGCTCT----CT----------------CTCAGTG---------------TG--C----GTGTGTGTGTGTAAAGGGCAAAGAGC--CTTATC-G--CCTC--CCC-GCG--CCACGCCCCCTTCG-----------------G----GCAGAAGTA-TAAAT-------TGGGT--AAAAA-AA--GCAATATACATATATCCT---G--CTCTTTTAGAATTTACCTGTGAAAGTGAAAACGTGACAACACGATAA--------AACGAACGAGGCAAGCAAAACAAAA-AC--------
droBia1	scf7180000302422:7180127-7180407 +		AAGTACAAAAAATAAAGGATTTTCGTATATATTGGAAAA---TATT-T-----GTAACGATTCGCTCGCAAGGT-GTTGTT----TT--CCCTCTCGCTCT----CTCACTCTTCCG------CTCCGCG---------------TG--C----GTGTGTGTGTGTAAAGGCCAAAGAGCGCCCCACC-GAGC--GC-TCC-CCG--CCACGCCCCCT-GT-----------------G----GCAGAAGAA-TAAAT-------TGGGT--AAAAA-----AGAAT----ATATATCCT---G--CTCTTTTAGAATTTACCTGTGAAAGTGAAAACGTGACAACACGATAA--------AACGAACGAGGCAAGCAAAACAAAAAAC--------
droTak1	scf7180000415708:556349-556630 +		AAGTACAAAAAATAAAAGGTTTTCGAATATATTCGAGTA---TATT-T-----ATAACAATTAGTTCGAAAGGCAGTGGTT----AT--CC------CTCT----CTCACTCTTCCA------CTCTGTGTGTG-----------TGCGT----GTGTGTGTGTGTAAAGGCCAAAGAGTGGCCCACC-G--CCTGC-CCC-GCG--CCACGCCCCCT-CT-----------------G----GCAGTAGAA-TAAAT-------TGGGT--AAAAA-----AGAAT----ATATATCCT---G--CTCTTTTAGAATTTACCTGTGAAAGTGAAAACGTGACAACACGATAA--------AACGAACGAGGCAAGCAAAACAAAACTC--------
droEle1	scf7180000491186:937502-937763 -		AAATACAAGTTATAAACGATTTAAAGAT--ATTTAAATA---TATT-T-----TTAACAATTCGCTCGTAA-----TTAC-CTTACT--CCCTCGCGCTT----------------------TCTCTG---------------------T----GTGTGTGTCTGTAAAGGCCAAAGAGCG-CCCGCC-G--CCTCTTCCC-GCG--CCACGCCCCCT-CG-----------------G----GCAACGGAA-TAAAT-------TGGGT--AAAAA-----AGAAT----ATATATCCT---G--CTCTTTTAGAATTTACCTGTGAAAGTGAAAACGTGACAACACGATAA--------AACGAACGAGCCAAGCAAAACAAAAATC--------
droRho1	scf7180000777264:25359-25630 +		AAGTACAAGTTATAGACGATTAAGGGAT--ATTTAAATA---TATT-TCGGATAGTACGATTCGCTAGTAA-----CTAC-CTTACT--CCCTCTCGCTCT----CTTGCTCGTTT------TCTCTGTG-------------------T----GTGCGTGTGTGTAAAGGCCAAAGAGCG-----------CCTC--CCCTGCG--CCACTCC-CCT-CG-----------------G----GCAACAGAA-TAAAT-------TGGGT--AAAAA-----AGAAT----ATATATCCT---G--CTCTTTTAGAATTTACCTGTGAAAGTGAAAACGTGACAACACGATAA--------AACGAACGAGGCAAGCAAAACAAAAAAC--------
droFic1	scf7180000453842:408259-408539 -		AAATATAAGAAATAAATGACTACCGGATATTT-TCAATA---TATT-T-----TTGACTGTTCGCTCGCAAGGTAGTTGTT---TCT---CCTCTCGCTCT----CTCACTCTTCCG------CTCTG--TGTG-----------TGC------GTGTGTGTGTGTAAAGGCCATCAAGCGCCTCCTCAG--CCTCC-CCC-GCG--CCACACCTCCT-CG-----------------G----GCTGTAGAA-TAAAT-------TGGGT--A--AA-----GGAAT----TTATATCCT---G--CTCTTTTAGAATTTACCTGTGAAAGTGAAAACGTGACAACACGATAA--------AAAGAACGAGGCAAGCAAAACAAAA-AC--------
droKik1	scf7180000302412:302369-302624 +		AAA---------------ATTATTGGATAACT-TCAAAA-AAC---CT-------AGCAACTTG-----------------------------CTCGTTTG----CTCACTCTTTCGGTATTGCTCTG--TGTT-----------TGCGT----GTGTGTGTGTGTAAAGGCCAATAAGCC-CCCTTC-T--T--GC-CCC-GCG--CCACGCCCCCAGCG-----------------G----GCAGCAGAA-TAAAT-------TGGTTGCA-AACACA--ACAACAACAAAATATCCT---C----TTTTTAGAATTTACCTGTGAAAGTGAAAACGTGACAACACGATAAA-------AACGAACGAGGCAAGCAAAACAAAAAAC--------
droAna3	scaffold_12943:3818111-3818357 +		--------------------------------------------------------------------------------------------TTTCAGTCA----CTCAGTCA---------GTGCTGTGTGAGTGTGTGTTTGGTG--T----GTGTGTGTGTGTAAAGGCCAAA-AGCGCCCCGTC-G--CCTCT-CCC-GCACACCACACCCCCG-CGACTAACGCGACG-----GGCA-GCAGTAGAA-TA--TTGTATTTTCGGG-AA-AAAATAAAAAAAA----ATAAATCCTCGTCCTCTTTTTTAGAATTTACCTGTGAAAGTGAAAACGTGACAAGCCGATA---------AACGAACGAGGCAAGCAAAACAAAAATC--------
droBip1	scf7180000395973:39201-39452 +		-------------------------------------------------------------------------------------------CTCTCGTTCCCGCTTTCA----GTCA------CTCTGTGTGAGTGTGTGTTA-GTG--C----GTGTGTGTGTGTAAAGGCCAAA-AGCGCCCCGTC-G--CCTCT-CCC-GCG--CCACACCCCCG-CGAACAACGCGACGACCGCGGCAGGCAGTAGAAATATAT---ATATTCGA---A-AAAAAA--AGAAA----AA--ATCGT---CCTCTTTTTTAGAATCTACCTGTGAAAGTGAAAACGTGACAACCCGATA---------AACGAACGAGGCAAGCAAAACAAAAATC-AGCAAGC
dp5	4_group3:7352833-7352925 +		---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCT---T--TTCCTTTAGAATTTAACTGTGAAAGTGAAAACGTGACAGCACGAAGAACGAAACGAACGAACGAGGCAAGCAAAACAAAAAACCCGC--GT
droPer2	scaffold_1:8799303-8799395 +		---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCT---T--TTCCTTTAGAATTTAACTGTGAAAGTGAAAACGTGACAGCACGAAGAACGAAACGAACGAACGAGGCAAGCAAAACAAAAAACCCGC--GT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

AAGTATACGAAATACGCGAATTTCGGAA--ACTAGAA---AAT---CAATC--------------TTTTAAGGTAGTTTAT--------TCATCTCGCTCT----CTCACTCT---------CCTCTGTGTGCG-----------TGCGTGAGTGTGTGTGTGTGTAAAGGCCAAAGAGTG-CCCTTC-G--CCTC--CCC--GG--CCACGCCCCCT-TG-----------------G----GCGGAATAA-TAAAT-------TGGG----AAAG-----AGAAT----ATATATCTT---G--CTCCTTTAGAATTTACCTGTGAAAGTGAAAACGTGACAACACGATAA--------AACGGACGAAGCAAGCAAAACAAAAAAC--------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..............................................................................................................................................................................................................................................................................................................................................................TAA--------AACGGACGAAGCAAGCAAAACAAAAAA.........	30	1	3.00	3	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................AA--------AACGGACGAAGCAAGC....................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................CTGTGTGCG-----------TGCGTGAGTGTGT...............................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................TACCTGTGAAAGTGAAAACGTGACAAC...................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................TTCGGAA--ACTAGAA---AAT---CAATC--------------T...........................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................AACACGATAA--------AACGGACGAAGCAAGC....................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................ATTTCGGAA--ACTAGAA---AAT---CAATC--------------TT..........................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................TGTGTGTAAAGGCCAAAGAGTG-CCCTTC-................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
........GAAATACGCGAATTTCGGAA--ACTAG..........................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................AATTTCGGAA--ACTAGAA---AAT---C..............................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

AAGTATACGAAATACGGCAATTTTGGAA--ACTAGAA---AAT---CAATC--------------TTTTAAGGTAGTTTAT-A-TAT--CCATCTCGCTCT----CTCACTCT---------CCTCTGTGTGCA-----------TGCGTGA--GTGTGTGTGTGTAAAGGCCAAAGAGTG-CCCTTC-G--CCTC--CCC--GG--CCACGCCCCCT-TG-----------------G----GCGGAATAA-TAAAT-------TGGG----AAAG-----AGAAT----ATATATCTT---G--CTCCTTTAGAATTTACCTGTGAAAGTGAAAACGTGACAACACGATAA--------AACGGACGAAGCAAGCAAAACAAATAAC--------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.............ACGGCAATTTTGGAA--ACTAGAA---.....................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0
.....................................................................................................................................................................TAAAGGCCAAAGAGTG-CCCTTC-G--C............................................................................................................................................................................................................	24	2	0.50	1	0	0	0	1
.................................................................................................................................................................TGTGTAAAGGCCAAAGAGTG-.......................................................................................................................................................................................................................	20	2	0.50	1	0	0	0	1
.................................................................................................................................................................TGTGTAAAGGCCAAAGAG..........................................................................................................................................................................................................................	18	2	0.50	1	0	0	0	1
..................................................................................................................................................................................................................................................................................................................................CTGTGAAAGTGAAAACGT.........................................................	18	2	0.50	1	0	0	1	0
..............................................................................................................................TGTGTGCA-----------TGCGTGA--GTG................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	0	1
........................................................................................................................................................................................................................................................ATAA-TAAAT-------TGGG----AAAG-----AGA................................................................................................................	20	2	0.50	1	0	1	0	0
.....................................................................................................................................A-----------TGCGTGA--GTGTGTGTGT.........................................................................................................................................................................................................................................	18	7	0.14	1	0	0	1	0

dm3

AAATATACGAAATACGCGAATTTCGGAA--ACTAGAA---AAT---CCATC--------------TTTTAAGGTAGTTTAT-T-TAT--CCATCTCGCTTT----TTCACTCT---------CCTCTGTGTGCG-----------TGCGT----GAGTGTGTGTGTAAAGGCCAAATAGTG-CCCTTC-G--CCTC--CCC--GG--CCACGCCCCCT-TG-----------------G----GCAGAGTAA-TAAAA-------TGGG----AAAG-----AGAAT----ATATATCTT---G--CTCCTTTAGAATTTACCTGTGAAAGTGAAAACGTGACAACACGATAA--------AACGGACGAAGCAAGCAAAACAAAAAAC--------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.................................................................................................................................................................................................................................................................................................................................................CGTGACAACACGATAA--------AACGGACG............................	24	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................G-----------TGCGT----GAGTGTGTGTGTAAA....................................................................................................................................................................................................................................	21	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................A--------AACGGACGAAGCAAGCAAAACA..............	23	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................GCGT----GAGTGTGTGTGTAAA....................................................................................................................................................................................................................................	19	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................TAAAA-------TGGG----AAAG-----AGAAT----ATATATCT..................................................................................................	26	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................ACACGATAA--------AACGGACGAAGCA.......................	22	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................GTGTGCG-----------TGCGT----GAGTGTGTG..........................................................................................................................................................................................................................................	21	2	3.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................CGATAA--------AACGGACGAAGCAAGCAAAACA..............	28	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.........................................................................................................................................................................................................................................................................................................................................................CACGATAA--------AACGGACGAAGCAAGC....................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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............................................................................................................................................................................................................................................................................................................................................GAAAACGTGACAACACGATAA--------AACGGACG............................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................ACGTGACAACACGATAA--------AACGGACG............................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................TGTGCG-----------TGCGT----GAGTGTGTGT.........................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................G-----AGAAT----ATATATCTT---G--CTCCTT.....................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................ACACGATAA--------AACGGACGAAG.........................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................ATTTCGGAA--ACTAGAA---AAT---...............................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................CGT----GAGTGTGTGTGTAAAGGCCAAA.............................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

AAATATACGAAATACGTGAATTTCCGAA--ACTAGAAGAAAAT---CTATC--------------TTCTAAGGTAGTTTAA-T-TATACCCATCTCGCTCT----CTCACTCA------------CTGTGTACG-----------TGCGT----GAGTGTGTGTGTAAAGGCCAAAGAGTG-CCCTTC-G--CCTC--CCT--GG--CCACGCCCCCT-AA-----------------G----GCAGAATAA-TAAAT-------TTGGA--A-AAA-----AAAAT----ATA---------------TTATAGAATTTACATGTGAAAGTGAAAACGTGACAACACGATAA--------AACGGACGAAGCAAGCAAAACAAAACAC--------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.........................................................................................................CTCACTCA------------CTGTGTACG-----------TGCGT----...................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
..............................................................................................................................TGTGTACG-----------TGCGT----GAGTGTGT...........................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
..............................................................................................................................TGTGTACG-----------TGCGT----GAGTG..............................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
..........................................................................................................................................................GAGTGTGTGTGTAAAGGCCAAA.............................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
....................................................................................................................................................................................................................................................................................................................................GTGAAAGTGAAAACGTGACA.....................................................	20	1	1.00	1	0	0	0	0	1	0	0
..........................................................................................................................................................GAGTGTGTGTGTAAAGGC.................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................ATGTGAAAGTGAAAACGTGACAACA..................................................	25	1	1.00	1	0	0	0	0	0	1	0
..........................................................................................................................................................GAGTGTGTGTGTAAAGGCCAAAGA...........................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
...........................................................................................................................................................AGTGTGTGTGTAAAGGCCAAAGAGT.........................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................GACAACACGATAA--------AACGGACGAAG.........................	24	1	1.00	1	0	0	0	0	1	0	0
....................................................................................................................................................................................................................................................................................................................................GTGAAAGTGAAAACGTGACAACACG................................................	25	1	1.00	1	0	0	0	0	0	1	0
............................................................................................................................................................................................................................A-----------------G----GCAGAATAA-TAAAT-------TTGGA--A-AAA-----A..................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................ATAGAATTTACATGTGAAAGT.................................................................	21	1	1.00	1	0	0	0	0	0	1	0
................................................................................................................................................................GTGTGTAAAGGCCAAAGA...........................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
................................................................................................................A------------CTGTGTACG-----------TGCGT----GAGT...............................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0

droYak3

AAATATACGAAAACAGTGAATTTTGGAA--ACGAGA----AAT---CAATC--------------TTCTAAGGTAGTTGA-----------ATTTTGCTCT----CTCACACT---------T--CTTTGTGCG-----------TGCGT----GAGTGTGTGTGTAAAGGACAAAGATTG-TCCTTC-G--TCTC--CCA-AGA--CCACGCCTCCG-TT-----------------G----GCAGAATAA-TAAAT-------TGGG----AAAA-----TGAAT----ATATGT-----------CGTTTAGAATTTACCTATGAAAGTGAAAACGTGACAACACGATAA--------AACGGACGAAGCAAGCAAAACAAAAAAC--------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.....................................................................................................................................G-----------TGCGT----GAGTGTGTGTGTAAAGGA.................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................GAAAGTGAAAACGTGACAAC...................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.........................................AT---CAATC--------------TTCTAAGGTAGTT...............................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................CT----CTCACACT---------T--CTTTGTGCG-----------T...........................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................TGCGT----GAGTGTGTGTGTAAAG...................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................AAT---CAATC--------------TTCTAAGGTAGT................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......ACGAAAACAGTGAATTTTGGA..................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.........AAAACAGTGAATTTTGGAA--ACGAGA----.....................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........AAACAGTGAATTTTGGAA--ACGAGA----.....................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................CTCCG-TT-----------------G----GCAGAATAA-TAAAT-------TGGG----A...........................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................GTGTGTGTGTAAAGGACAAAGATTG-T......................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................GA----AAT---CAATC--------------TTCTAAGG....................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................ACACGATAA--------AACGGACGAAGCAAGC....................	25	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................TTGTGCG-----------TGCGT----GAGTGTGTGTGT.......................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........AAACAGTGAATTTTGGAA--ACGAG..........................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................C-G--TCTC--CCA-AGA--CCACGCCTCCG-TT-----------------...............................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................TAAAT-------TGGG----AAAA-----TGAAT----ATATGT-----------CG.......................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................G-----------TGCGT----GAGTGTGTGTGT.......................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

AAGTATAAAAAATAAACGATATTCCGAA--ATTACAATA---AATACTTACATATAACGATTCGCTGG-AGGGTAATTGTT----CT--CCTTCTCGCTCT----CT----------------CTCAGTG---------------TG--C----GTGTGTGTGTGTAAAGGGCAAAGAGC--CTTATC-G--CCTC--CCC-GCG--CCACGCCCCCTTCG-----------------G----GCAGAAGTA-TAAAT-------TGGGT--AAAAA-AA--GCAATATACATATATCCT---G--CTCTTTTAGAATTTACCTGTGAAAGTGAAAACGTGACAACACGATAA--------AACGAACGAGGCAAGCAAAACAAAA-AC--------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AAGTACAAAAAATAAAGGATTTTCGTATATATTGGAAAA---TATT-T-----GTAACGATTCGCTCGCAAGGT-GTTGTT----TT--CCCTCTCGCTCT----CTCACTCTTCCG------CTCCGCG---------------TG--C----GTGTGTGTGTGTAAAGGCCAAAGAGCGCCCCACC-GAGC--GC-TCC-CCG--CCACGCCCCCT-GT-----------------G----GCAGAAGAA-TAAAT-------TGGGT--AAAAA-----AGAAT----ATATATCCT---G--CTCTTTTAGAATTTACCTGTGAAAGTGAAAACGTGACAACACGATAA--------AACGAACGAGGCAAGCAAAACAAAAAAC--------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AAGTACAAAAAATAAAAGGTTTTCGAATATATTCGAGTA---TATT-T-----ATAACAATTAGTTCGAAAGGCAGTGGTT----AT--CC------CTCT----CTCACTCTTCCA------CTCTGTGTGTG-----------TGCGT----GTGTGTGTGTGTAAAGGCCAAAGAGTGGCCCACC-G--CCTGC-CCC-GCG--CCACGCCCCCT-CT-----------------G----GCAGTAGAA-TAAAT-------TGGGT--AAAAA-----AGAAT----ATATATCCT---G--CTCTTTTAGAATTTACCTGTGAAAGTGAAAACGTGACAACACGATAA--------AACGAACGAGGCAAGCAAAACAAAACTC--------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AAATACAAGTTATAAACGATTTAAAGAT--ATTTAAATA---TATT-T-----TTAACAATTCGCTCGTAA-----TTAC-CTTACT--CCCTCGCGCTT----------------------TCTCTG---------------------T----GTGTGTGTCTGTAAAGGCCAAAGAGCG-CCCGCC-G--CCTCTTCCC-GCG--CCACGCCCCCT-CG-----------------G----GCAACGGAA-TAAAT-------TGGGT--AAAAA-----AGAAT----ATATATCCT---G--CTCTTTTAGAATTTACCTGTGAAAGTGAAAACGTGACAACACGATAA--------AACGAACGAGCCAAGCAAAACAAAAATC--------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AAGTACAAGTTATAGACGATTAAGGGAT--ATTTAAATA---TATT-TCGGATAGTACGATTCGCTAGTAA-----CTAC-CTTACT--CCCTCTCGCTCT----CTTGCTCGTTT------TCTCTGTG-------------------T----GTGCGTGTGTGTAAAGGCCAAAGAGCG-----------CCTC--CCCTGCG--CCACTCC-CCT-CG-----------------G----GCAACAGAA-TAAAT-------TGGGT--AAAAA-----AGAAT----ATATATCCT---G--CTCTTTTAGAATTTACCTGTGAAAGTGAAAACGTGACAACACGATAA--------AACGAACGAGGCAAGCAAAACAAAAAAC--------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AAATATAAGAAATAAATGACTACCGGATATTT-TCAATA---TATT-T-----TTGACTGTTCGCTCGCAAGGTAGTTGTT---TCT---CCTCTCGCTCT----CTCACTCTTCCG------CTCTG--TGTG-----------TGC------GTGTGTGTGTGTAAAGGCCATCAAGCGCCTCCTCAG--CCTCC-CCC-GCG--CCACACCTCCT-CG-----------------G----GCTGTAGAA-TAAAT-------TGGGT--A--AA-----GGAAT----TTATATCCT---G--CTCTTTTAGAATTTACCTGTGAAAGTGAAAACGTGACAACACGATAA--------AAAGAACGAGGCAAGCAAAACAAAA-AC--------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AAA---------------ATTATTGGATAACT-TCAAAA-AAC---CT-------AGCAACTTG-----------------------------CTCGTTTG----CTCACTCTTTCGGTATTGCTCTG--TGTT-----------TGCGT----GTGTGTGTGTGTAAAGGCCAATAAGCC-CCCTTC-T--T--GC-CCC-GCG--CCACGCCCCCAGCG-----------------G----GCAGCAGAA-TAAAT-------TGGTTGCA-AACACA--ACAACAACAAAATATCCT---C----TTTTTAGAATTTACCTGTGAAAGTGAAAACGTGACAACACGATAAA-------AACGAACGAGGCAAGCAAAACAAAAAAC--------	Size	Hit Count	Total Norm	Total
No Reads

droAna3

--------------------------------------------------------------------------------------------TTTCAGTCA----CTCAGTCA---------GTGCTGTGTGAGTGTGTGTTTGGTG--T----GTGTGTGTGTGTAAAGGCCAAA-AGCGCCCCGTC-G--CCTCT-CCC-GCACACCACACCCCCG-CGACTAACGCGACG-----GGCA-GCAGTAGAA-TA--TTGTATTTTCGGG-AA-AAAATAAAAAAAA----ATAAATCCTCGTCCTCTTTTTTAGAATTTACCTGTGAAAGTGAAAACGTGACAAGCCGATA---------AACGAACGAGGCAAGCAAAACAAAAATC--------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.........................................................................................................................................GTGTTTGGTG--T----GTGTGTGTGTGTAA.....................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
.........................................................................................................................................................................................................................................................................................AAAAAA----ATAAATCCTCGTCCT...........................................................................................	21	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................TAAAAAAAA----ATAAATCCTCGTCCTCT.........................................................................................	26	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................GTGCTGTGTGAGTGTGTGTTTGGT...........................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0
......................................................................................................................................................................................................................................................................................................................TTTAGAATTTACCTGTGAAAGT.................................................................	22	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................GTGAGTGTGTGTTTGGTG--T----GTGTGT.............................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
.....................................................................................................................................................................................................................................................................................................................................................ACAAGCCGATA---------AACGAACGA...........................	20	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................CGCGACG-----GGCA-GCAGTAG...................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................AGTGTGTGTTTGGTG--T----GTGTGT.............................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0
........................................................................................................................................TGTGTTTGGTG--T----GTGTGTGTGTG........................................................................................................................................................................................................................................	23	2	0.50	1	0	0	0	0	0	1

droBip1

-------------------------------------------------------------------------------------------CTCTCGTTCCCGCTTTCA----GTCA------CTCTGTGTGAGTGTGTGTTA-GTG--C----GTGTGTGTGTGTAAAGGCCAAA-AGCGCCCCGTC-G--CCTCT-CCC-GCG--CCACACCCCCG-CGAACAACGCGACGACCGCGGCAGGCAGTAGAAATATAT---ATATTCGA---A-AAAAAA--AGAAA----AA--ATCGT---CCTCTTTTTTAGAATCTACCTGTGAAAGTGAAAACGTGACAACCCGATA---------AACGAACGAGGCAAGCAAAACAAAAATC-AGCAAGC	Size	Hit Count	Total Norm	Total
No Reads

dp5

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCT---T--TTCCTTTAGAATTTAACTGTGAAAGTGAAAACGTGACAGCACGAAGAACGAAACGAACGAACGAGGCAAGCAAAACAAAAAACCCGC--GT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.....................................................................................................................................................................................................................................................................................................................................................ACAGCACGAAGAACGAAACG....................................	20	1	2.00	2	0	0	2	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................GACAGCACGAAGAACGAAA......................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................AGAACGAAACGAACGAACGAGGC........................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	1
..........................................................................................................................................................................................................................................................................................................................................................ACGAAGAACGAAACGAACGAACGAGGC........................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	1
..........................................................................................................................................................................................................................................................................................................................................GTGAAAACGTGACAGCACGAAGAAC..........................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCT---T--TTCCTTTAGAATTTAACTGTGAAAGTGAAAACGTGACAGCACGAAGAACGAAACGAACGAACGAGGCAAGCAAAACAAAAAACCCGC--GT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

dsi_13517

2l:20364124-20364292 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-39.7	-39.6	-39.6