ID:

dsi_13474

 Coordinate:

3l:16394711-16394860 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-17.0 -16.8 -16.8

Flybase annnotation

exon [3l_16394438_16394710_-]; CDS [3l_16394438_16394710_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GACGCTAGCACCACCAAATGGCGGAAACAGGGGAACAGAGAACTGGGGAAGACCAAAATGTGTAGCGCAGAAATTGTAGAGCACACGATCTGCAGTTTGAAACATTAGAAAATTCCTTAACTTTACAAAAATATTATCTAATTGTACACCCATTTGATACCATGTTTATGTCTAACCAACTTCTTTTCGATCCCCAACAGATGCAGGACTATTGGCACATTCCCCGCGCCTCGCTGGCATCCTCCTCGAG
**************************************************........((((...)))).((((((((((........)))))))))).........(((((............(((.((((((((((.((.((......)).))))))..)))))).)))............)))))............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
..........................................................................................................................................................................................................GCAGGACTATTGGCACATTCCC.......................... 22 0 1 1.00 1 0 1 0 0
..................................................................GCAGAAATTGTAGAGCACACGATCTG.............................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0
..........................................................................................TGCAGTTTGAAGAGTTAGAAAAT......................................................................................................................................... 23 3 1 1.00 1 0 0 1 0
...............AAAGGGCGGTAACAGGGG......................................................................................................................................................................................................................... 18 2 4 0.25 1 0 0 0 1
......................................................................................................................................................................................CTTTTCGATCCCCAACCGGC................................................ 20 3 8 0.13 1 1 0 0 0
................................................ATGGCCAAACTGTGTAGCG....................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 1

Anti-sense strand reads

CTGCGATCGTGGTGGTTTACCGCCTTTGTCCCCTTGTCTCTTGACCCCTTCTGGTTTTACACATCGCGTCTTTAACATCTCGTGTGCTAGACGTCAAACTTTGTAATCTTTTAAGGAATTGAAATGTTTTTATAATAGATTAACATGTGGGTAAACTATGGTACAAATACAGATTGGTTGAAGAAAAGCTAGGGGTTGTCTACGTCCTGATAACCGTGTAAGGGGCGCGGAGCGACCGTAGGAGGAGCTC
**************************************************........((((...)))).((((((((((........)))))))))).........(((((............(((.((((((((((.((.((......)).))))))..)))))).)))............)))))............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
...................................................................................................................................................................CAAACACAGGTTGGTAGAAGA.................................................................. 21 3 3 0.33 1 1 0 0 0 0 0 0
.................................................................................................................AGCAATTGAAATGTTT......................................................................................................................... 16 1 5 0.20 1 0 0 0 1 0 0 0
...............................................................................................................................................CAAGTTGGTAAACTATGG......................................................................................... 18 2 7 0.14 1 1 0 0 0 0 0 0
..........................................................................CCATCTGGTATGCTAGACGT............................................................................................................................................................ 20 3 15 0.13 2 0 0 0 0 2 0 0
..................ACCGCCTTTGTCTCC......................................................................................................................................................................................................................... 15 1 20 0.10 2 0 2 0 0 0 0 0
....................CGCCTTTGTCCCCTAGCTTC.................................................................................................................................................................................................................. 20 3 10 0.10 1 0 0 0 0 0 0 1
.......................................................................................................................................................................................AGAAGCTAGGGGTTG.................................................... 15 1 10 0.10 1 0 1 0 0 0 0 0
..............................................................................................................................................................................................AGGGGTTGTCTACCT............................................. 15 1 14 0.07 1 0 0 1 0 0 0 0
........................................TTGACCCTTTCTGGCTTT................................................................................................................................................................................................ 18 2 18 0.06 1 0 0 1 0 0 0 0
...............................................................................................................................................CATGTGGGTTAACGAT........................................................................................... 16 2 20 0.05 1 0 0 1 0 0 0 0
...............................................................................................................................................................................GGTTGAAGGAAAGCTTG.......................................................... 17 2 20 0.05 1 0 1 0 0 0 0 0
............................................................................................................................................................................ATTGGCTGAAGAAAAGAAA........................................................... 19 3 20 0.05 1 0 0 0 0 0 1 0
.......................................................................................................................................................................................................................GTGTACAGGGCGCGGGGCG................ 19 3 20 0.05 1 0 0 0 1 0 0 0
..................................................................................TGTGCTAGTCGTCAAA........................................................................................................................................................ 16 1 20 0.05 1 0 0 1 0 0 0 0
................................................................................AGTGTGCTACACGTCA.......................................................................................................................................................... 16 2 20 0.05 1 0 0 1 0 0 0 0
CTGCGATCATGGTTG........................................................................................................................................................................................................................................... 15 2 20 0.05 1 0 0 0 0 0 1 0
....................................................................................................................................................................................................................................AGAGCCATCGTAGGAGGAG... 19 3 20 0.05 1 0 1 0 0 0 0 0

Generated: 04/24/2015 at 04:49 AM