ID:

dsi_13463

 Coordinate:

x:11944305-11944454 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-43.1 -43.0 -43.0

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
(GA)nSimple_repeatSimple_repeat+

Sense Strand Reads

AGTGGGTGGAATGGGTGGTTGGGTGGCTGGCAGGTGGTGCAAAATGTGGGGTAAAGCGAGCGAAGGCTACTTTGATGTATTTTCATATTCCGCCGAGACTCGCGAAGTGCAGGGGGTTGGGTTGGGTAGAAAGCAGACTGCTGCTGCCACAAGGACGAAAAGGACTCTACTCCCTCCACCTCTCTCGCTCTCTCTCTCTCCCTCTCTGTTTGGTCAGCAGCCAGTCTATCTGACATTTAAAACGCTGATT
**************************************************....(((((((((((....)))))(((......)))....(((........)))..(((.(((((((.(((((((((((..((((...)))).))))).))............)))).))))))).)))....))))))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 M053
female body
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M025
embryo
 O002
Head
 SRR553486
Makindu_3 day-old ovaries
 SRR1275487
Male larvae		 GSM343915
embryo
 SRR902008
ovaries
................................................GCGTAAAGCGAGCGCAGGC....................................................................................................................................................................................... 19 2 3 43.00 129 101 24 4 0 0 0 0 0 0 0 0 0 0 0
...............................................GGCGTAAAGCGAGCGCAGGC....................................................................................................................................................................................... 20 2 2 23.50 47 34 5 7 0 1 0 0 0 0 0 0 0 0 0
..................................................GTAAAGCGAGCGCAGGCG...................................................................................................................................................................................... 18 2 9 12.89 116 64 25 26 0 0 0 0 0 0 0 0 1 0 0
..............................................GGGCGTAAAGCGAGCGCAGGC....................................................................................................................................................................................... 21 3 2 7.50 15 9 1 5 0 0 0 0 0 0 0 0 0 0 0
.................................................CGTAAAGCGAGCGCAGGC....................................................................................................................................................................................... 18 2 6 7.00 42 30 4 7 0 1 0 0 0 0 0 0 0 0 0
...............................................GGCGTAAAGCGAGCGCAGGCG...................................................................................................................................................................................... 21 3 4 6.50 26 22 0 4 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................GCAGGGGGTTTGGTTGGGTGGAAAGT.................................................................................................................... 26 3 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0
..............................................TGGCGTAAAGCGAGCGCAGGC....................................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................TGCAGGGGGTTTGGTTGGGTGGAAAGT.................................................................................................................... 27 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.GTGGGTGGAATGGGTGGTTG..................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................CTCTCTCTCCCTCTCTGTT........................................ 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................CGAAAAGGACTCTACTCCCTCCACC...................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................TGCCACAAGGACGAAAAGGACTCTACTCTC............................................................................ 30 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
................................................GCGTAAAGCGAGCGCAGG........................................................................................................................................................................................ 18 2 5 0.60 3 1 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................GAAGACTGCTGCTGCAACCAGG................................................................................................ 22 3 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................GGCGTAAAGCGTGCGTAGGC....................................................................................................................................................................................... 20 3 8 0.50 4 0 0 0 0 4 0 0 0 0 0 0 0 0 0
..................................................GTAAAGCGAGCGCAGGC....................................................................................................................................................................................... 17 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................GCGTAAAGCGAGCGTAGG........................................................................................................................................................................................ 18 2 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................GTAAAGCGAGCGCAGGCGGC.................................................................................................................................................................................... 20 3 17 0.41 7 4 3 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAAAGCGCGCGTAGG........................................................................................................................................................................................ 16 2 15 0.40 6 0 0 0 0 3 1 0 0 0 0 2 0 0 0
.............................................................TAGGGCTACTTTGATATATTTT....................................................................................................................................................................... 22 3 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................TAGACTGCTGCTGCAACCAGG................................................................................................ 21 3 6 0.33 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0
..................................................GTAAAGCGAGCGCAGG........................................................................................................................................................................................ 16 1 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................GTAAAGCGTGCGCAGGC....................................................................................................................................................................................... 17 2 17 0.24 4 0 0 0 0 0 3 1 0 0 0 0 0 0 0
..................................................GTAAAGCGCGCGTAGGC....................................................................................................................................................................................... 17 2 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................GGCGTAAAGCGTGCGCAGGC....................................................................................................................................................................................... 20 3 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
........GAATGGGTGGTTGGGT.................................................................................................................................................................................................................................. 16 0 6 0.17 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...............................................GGCGTAAAGCGAGCGCAGAC....................................................................................................................................................................................... 20 3 12 0.17 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
...........TGGATGGTTGGGTCTCTGGCA.......................................................................................................................................................................................................................... 21 3 7 0.14 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................GGGCGTAAAGCGAGCGCAGG........................................................................................................................................................................................ 20 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................TTACGCCGAGACTCTCG.................................................................................................................................................. 17 2 8 0.13 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..........ATGGGTGGGTGGGTGGCT.............................................................................................................................................................................................................................. 18 1 16 0.13 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0
................................................GCGTAAAGCGAGCACAGGC....................................................................................................................................................................................... 19 3 16 0.13 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
......TGGAATGTGTGGTTGGATG................................................................................................................................................................................................................................. 19 2 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...................................................TAAAGCGCGCGTAGGC....................................................................................................................................................................................... 16 2 20 0.10 2 0 0 0 0 1 1 0 0 0 0 0 0 0 0
..................................................GTAAAGCGTGCGCAGG........................................................................................................................................................................................ 16 2 20 0.10 2 0 0 0 0 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................TCGGTCTCTCTCTCTCCC................................................ 18 1 12 0.08 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................GCGTAATGCGAGCGCAGGC....................................................................................................................................................................................... 19 3 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............GGTGGTCGGGTCGCTGGCCGG........................................................................................................................................................................................................................ 21 3 13 0.08 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................AGAAGGACGAAGCGGACTCT.................................................................................. 20 3 13 0.08 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................TGGACGGGGTTGGGTTGGTTA.......................................................................................................................... 21 3 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1
..................ATGGGTGTCTGGCAGGT....................................................................................................................................................................................................................... 17 2 16 0.06 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
................................................GCGTAAAGCGTGCGCAGGC....................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...............................................................................................................................................................CAGGACTCTACCCCCT........................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.................................................CGTAAAGCGAGCGCGGGC....................................................................................................................................................................................... 18 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TAAAGCGTGCGCAGGC....................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

TCACCCACCTTACCCACCAACCCACCGACCGTCCACCACGTTTTACACCCCATTTCGCTCGCTTCCGATGAAACTACATAAAAGTATAAGGCGGCTCTGAGCGCTTCACGTCCCCCAACCCAACCCATCTTTCGTCTGACGACGACGGTGTTCCTGCTTTTCCTGAGATGAGGGAGGTGGAGAGAGCGAGAGAGAGAGAGGGAGAGACAAACCAGTCGTCGGTCAGATAGACTGTAAATTTTGCGACTAA
**************************************************....(((((((((((....)))))(((......)))....(((........)))..(((.(((((((.(((((((((((..((((...)))).))))).))............)))).))))))).)))....))))))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total O002
Head
 SRR902009
testis
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M023
head
..........................................................................................................................................................................................CGAGAGAGAGAGAGGGAGAGAC.......................................... 22 0 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................................................................................................................GAGAGAGAGGGAGAGACA......................................... 18 0 4 1.00 4 4 0 0 0 0 0 0
.....................................................................................................................................................................................GAGAGCGAGAGAGAGAGGGGGAG.............................................. 23 1 6 0.33 2 0 2 0 0 0 0 0
...................................................................................GCATACGGCGGCTCTGA...................................................................................................................................................... 17 2 5 0.20 1 0 0 1 0 0 0 0
...................................................................................................................................................................................................................CCAGGCAGCGGTCAGATAG.................... 19 3 10 0.10 1 0 0 0 1 0 0 0
.........................................................................................................................................................CTGCTTTTCCTGATA.................................................................................. 15 1 11 0.09 1 0 0 0 0 1 0 0
...................................CCACGGTCTACACCCCA...................................................................................................................................................................................................... 17 2 14 0.07 1 0 0 0 0 0 1 0
.........................................................................................................................................................................................GCGAGAGAGGGAGAGGGA............................................... 18 1 20 0.05 1 1 0 0 0 0 0 0
.....................................................................................................................................................................AGATGAGGGAGATACAGAG.................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:11944255-11944504 - dsi_13463 AGTGGGTGGAA-----------------------------T--------------GGGTGGT----TGGGTGGCT-GGCAGGTGGTG---C---AAAATGTGGGGTAAAGCG----A----------G-------------------------------CGAAGGCTACTTTGATGTATTT------TCATATTCCGCCGAGACTCGCGAAGT-GCA-------------------------GGGGGTTGGGTTG------------------------------GGTAGAAAGCAGA-------------------------------------C---------------------------TGCTG-------------------------------------------------------CTGCCACAAGGACGAAAAGGAC-TCTACTCCCTCCACCTC-------------------------TCTCGC----TCTCTCTCTCTCCCT----C----TCTGTTTGGTCAGCAGC-------------CAG--------------------------------------------------------------------TC-----T-ATCTGACATTT-AAAAC--GCTGATT
droSec2 scaffold_21:342854-343120 - CGTGGGTGGT------------------------------T--------------GGGTGGT----TGGGTGGCT-GGCAGGTGGTG---C---AAAATGTGGGGTAAAGCG----A----------G-------------------------------CGAAGGCTACTTTGATGTATTT------TCATATTCCGCCGAGACTCGCGAAAT-ACG-----CAGGCTG--TAGAAAGTGCAGGGGGTTTGGTTG------------------------------GGTAGAAAGTAGA-------------------------------------C---------------------------TGCTG-------------------------------------------------------CTGCCACAAGGACGAAAAGGAC-TCTACTCTCTCCCTCTC-------------------------TCCCTC----TCCCTCTCTCTCCCG----C----TCTGTTTGGTCAGCAGC-------------CAG--------------------------------------------------------------------TC-----T-ATCTGACATTT-AAAAC--GCTGATT
dm3 chrX:12588506-12588759 - AATGGGTGGAG-----------------------------T--------------GGGTGGT----TGGGTGGTT-GGCAGGTGGTG---C---AAAATGTGGAGTAAAGCG----A----------G-------------------------------CGAAGGCTACTTTGATGTATTT------TCATATTCCGCCGAGACTCGCGAAAT-ACG-----CAGGCTG--TAGAAAGTGCAGGGGGTTTGGTTGGGTTGGTGGTGGGTG------GGG----GAGGTAGAAAGTAGA-------------------------------------C----------------------------------------------------------------------------------------TGCCACAAGGACGAAAAGGAC-TCTACTCTC---------------------------------------------------------T----C----TCTGTTTGGTCAGCAGC-------------CAG--------------------------------------------------------------------TC-----T-ATCTGACATTT-AAAAC--GCTGATT
droEre2 scaffold_4690:14269986-14270217 + TGGG------------------------------------------------------TGGT----GGGG----T-GGCAGGTGGTG---C---AAAGT------------G----A----------G-------------------------------CGGAGGCTACTTTGATGTATTT------TCATATTCCACCGAGACTCGCGAAAT-ACG-----CAGGCCG--GAGAAAGTGCAGTGGCTT-G-GTGGGC-----------GGGGAAGGGCGGC--GGGAAGGAAGCAGA-------------------------------------C---------------------------TGCTG-------------------------------------------------------GCGCCACAAGGACGAAAAGGAC-ACCCATCTC-------------------------------------------------------CCAGT--C----TGAGTTTGGCCAGCATC-------------CCG--------------------------------------------------------------------TC-----T-ATCTGACATTT-AAAAC--GCTGATT
droYak3 X:6865861-6866145 - TGTGGGTGGTT-------------------------------------------------------TGGGTGGGT-GGCAGGTGGTGGTGC---AGAATGTGGGGTAAAGCGGTAAAGCGGTGGG--G-------------------------------TGAAGGCTACTTTGATGTATTT------TCATATTCCACCGAGACCCGCGAAAA-ACG-----CAGGCTG--GAGAAAGTGCAGAGGCTT-G-ATGGGCAGCAG------GGGGAGGGGTGG----CGAAGAAAGTAGA-------------------------------------C----------------------------------------------------------------------------------------TGCTACAAGGACGAAAAGGAC-TCTGCTCCCTCTCTCTC-------------------------CCTCTC----TCCCTCTCACTC--T----C----TCTGTTTGGTCAGCATT-------------CAG--------------------------------------------------------------------TC-----T-ATCTGACATTT-AAAAC--GCTGATT
droEug1 scf7180000409110:978275-978543 - GATGGGATGGG-----------------------------------------------TGGCTTTTTGGG--GGT-GGCAGGTGGTG---CTGTAAA--GTGGAGTAAAGCG----A----------G----------------------------------TGGCTACTTTGATGTATTT------TCATATTCCACTGAGATTCGCGAAAT-ACG-----CAGGCTGTG--GA---------------------------------------------------GGAGAAAGTAGA------GGGGAAGT--AGGGAGATGCT----------------------------ACGCTACTGCTGCTG-------------------------------------------------------CTGCCGCAAGGACGAAAAGGAC-TCC---------------------------------------------------------------T----C----ACTGTTTGGTCAGCAGT-------------CAGTCAG---------------------------------C-CAGTCTCCCTCTCT--ATCTTTCCCTCTTTC-----C-ATCTGACATTT-AAAAC--GCTGATT
droBia1 scf7180000298389:168017-168251 - AGGGGGAGGAG-----------------------------T--------------GGGTGGC----TGGGTGATGGGGCAGGTGGTG---C---AAAGT------------G-----------------------------------------------GAGAGGCTACTTTGATGTATTT------TCATATTCCACTGAGATTCGCGAAAT-ACGCGGCGCAGGCTG--CAGAAAGT--------------------------------------------------------AGAAGTAGA-------------------------------GAAAGGTGG------CGTGTT------------------------------------------------TTTCTCTTTTTTTTTC---CTTTCACAAGGACGAAAGGGAC-TC---------------------------------------------------------------------C----TCTGTTTGGTCAGCAGT-------------CG------------------------------------------------------TC---------GTCGTC-----TCCACTGACATTT-AAAGC--CCTGATT
droTak1 scf7180000413903:105551-105755 + AGTTG---------------------------------------------------------------GGTGG---TGCAGGTGGTG---C---AAAGT------------GGGGAG----------G-------------------------------CGGCGGCTACTTTGATGTATTT------TCATATTCCACTGAGATTCGCGAAAT-ACG-----CAGGGTG--G----------------------------------------------------------------------------------------------------------------------C-TGGG------------------------------------------------CTTCTGTTTTTTTTTTTTGTAGCCACAAGGACGCAAAGGAC-TCC---------------------------------------------------------------T----C----TCTGTTTGGTCAGCAGC-------------CAGTCGT---------------------------------CG--------------TC-GCA-----GTCGTC-----T-CACTGGCATTT-AAAAC--GCTGATT
droEle1 scf7180000491023:274931-275172 - ATGGTTGG--G-----------------------------T--------------GGGTGGC----TGGTTGGCT-GTGA-------------------------------G----A----------G-------------------------------CGGCGGCTACTTTGATGTATTT------TCATATTCCACTGAGATTCGCAAAAT-ACG-----CAGCCTG--GAGAAAGTGGC---------------------------G----------GCAAGGGGAGAAAGTAGA-------------------------------------C------------------------------------------------------------------------------------------------AGAGGGAAAGGAC-GGTCCGCAC-------------------------------------------------------ACAGTCAGTTAGTCAGT-TAGTCAGA----TATTCAGTCAGTCAGTCAG---------------------------------T-CAGTCAGTCAGTCA--GTCAGTCTCTTTCTC-----T-CTCTGACATTC-AAAAC--GCCGATT
droRho1 scf7180000779985:83621-83830 + GCTG------------------------------------------------------------------------------TGGTG---C---AAA--GGCGAATAAAGCG----A----------G-------------------------------GGAAGGCTACTTTGATGTATTT------TCATATTCCACTGAGATTCGCAAAAATACG-----CAGGCTG--GAGAAAGTGAC---------------------------GGGGA---------AAGGGAGAAAGTAGA-------------------------------------CAGAGGGAGTGTTG--------------TGGTG-------------------------------------------------------GTGCCACAACGACGAAAAGGAC-GCC---------------------------------------------------------------A----C----TCTGTTTGGTCAGCAGC-------------CAA--------------------------------------------------------------------TC-----T-CTCTGACATTT-AAAAC--GCTGATT
droFic1 scf7180000454050:493095-493270 - GTG-G----------------------------------------------------ATTGT----TGGGCGG---GGCAGGTG------------------------------------------------------------------------------GGGCTACTTTGATGTATTT------TCATATTCCACCGAGACTCGCGAAAA-ACG-----CAGGCAGCGGAGAAG--------------------------------G---------------GGGAGAAAGTAGA-------------------------------------C--------------------------------------------------------------------------------------------ACAAGGACGAAAAGGACCTCC---------------------------------------------------------------T----C----GCTTTCTGGTCAGCAACATTTT--------CAG--------------------------------------------------------------------TT-----T-CTCTGACATTT-AAAAC--GCTGATT
droKik1 scf7180000302621:123268-123477 + AAATGGG-----------------------------------------------------------------------------------------AATATGGAGAAAAGCG--------------------------------------------------AGGCTACTTTGATGTATTT------TCATATTCCGCCGAGATTCGCAAGAG--------------------------------------------------------------------------GATAAAAT------------------TTATAA--AGGCAAGAAG--------------------------------------------------------GAC-GAGGCACAAGAG---------------------------------------------C---------------------------------------------------------------T----C----TTTATTTGGTCAGCAGA-------------AG-TAGGAAAAAGCTGAAGTAAAAAGCAAAAGCAAGAAGCAA--------------A-AGCAGGTTCTTCCCC-----G-CGCTGACATTT-AAAACTTTTTGATT
droAna3 scaffold_13117:3507428-3507618 - TGGTTTA-----------------------------------------------------------------------CAGG-----------------------------G-----------------------------------------------GGTGAACTACTTTGATGTGTTTTTTTTTTTGTATTTCTCTTGGGATTCTGAAGG-ACA-----CAAGAG-AGAGTTAG--------------------------------A---------------GGGAG---------------------------------------------------------------------------------------------------------------------------------------------AGGGCGAATAAAAT-TCTAAACATTTGATTTT-------------------------ATTATT----TTTTTTAGACTCCTT----T----TTGGATAGACTCACCCC-------------CTA--------------------------------------------------------------------ACTCGCGG-GTCTTTTATTT-TAATT--AC--ATT
dp5 XL_group1a:3386425-3386706 - GGTAGAGAGAA-----------------------------A--------------GAGAGG--------------------------------------------------TCCAGGCCCACTGGGCGGGGAAGGGGGATTGGG---------------GGCTGGCTACTTTGATGTATTT------TCATATTCCGCTGAGATTCGCGAGCC-ACG-----CAATGAGTG-----------------------------------------------------------------GGAGTGGAGGAGTGGTTCTGGAAAATGCCAGGGAGTGG-CAGGGGCAG---------------------TGG---------------CAGTGACAGTGGCAGAAGAGCT---------------------------------------C-TCTCTTCTCTCCCCCTC-------------------------TCGC------TC----CCGCTGCCA--CTCTTCGTCTGTTTGGTCAGCATT-------------CAGCATT---------------------------------CA--------------TC---------GTTGTA-----T-GTCTGACATTTCGAAAC--GCTGATT
droPer2 scaffold_77:117931-118213 + GGTAGAGAGAA-----------------------------A--------------GAGAGG--------------------------------------------------TCCAGGCCCACTGGGCGGGGAAGGGGGATTGGG---------------GGCTGGCTACTTTGATGTATTT------TCATATTCCGCTGAGATTCGCGAGCC-ACG-----CAATGAGTG-----------------------------------------------------------------GGAGTGGAGGAGTGGTTCTGGAAAATGGCAGGGAGTGG-CAGTGGCAG---------------------TGG---------------CAGTGACAGTGGCAGAAGAGCT---------------------------------------C-TCT-CTCTC----TCTC-------------------------CCCCTCTCGCTC----CCGCTCCCA--CTGTTCGTCTGTTTGGTCAGCATT-------------CAGCATT---------------------------------CA--------------TC---------GTTGTA-----T-GTCTGACATTTCGAAAC--GCTGATT
droWil2 scf2_1100000004909:3778064-3778331 - AGCGTAAGGAG-----------------------------A--------------GGGGGG---------------------TGGGG---A---CAAAT------------G-----------------------------------------------GTGGGGCTACTTTGATGTAGATTT-TCATCATATTCCACTGAGACGAACAAGTG-----------GAGAGAGAAAGAG--------------------------------A---------------GGGAGA------------------------------CGGCCTGAAGTGAAC-----GCATGTTGGC-AAAG-------TGCTGCTGATGGGGGCGTGGCATCATCAGC--------ATCC---------------------------------------A-T---CCCCC-CC-CCCCNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCC----CCCCCCCCCCTCCCT----CTTAGTGTGTTTGGTCAGCATT-------------CA---------------------------------------------------------------------------------TGACATTT-AA-AT--GTTGATT
droVir3 scaffold_12928:2243545-2243688 - GCCGGCGAATG---T-----------------------AGA--------------ATGAGAT----TGGG--AA--TGAAAATGAGG---C---TGAGC------------TGAAGAGCAACAGCGAGAGCGGACGCGAATGAGGCTGTCCGTTGTTGGCTTTGGCTACTTTGATGTATTT------TCATATTCCACAGAGACGAGCCAAAC-GCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6473:14019831-14019877 - -------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCTACTTTGATGTATTT------TCATATTCCACAGAGACGAGCCGAAC-GCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15203:5104132-5104272 + AGGGGGATACGACGTATCGTGGGCACAGGACAAGGACGAGAATGAGTTTTACGTTGG----------GACTGACT-GAGAGAATGAGGACC---AGAAT------------G------------------------------AGGCCG-CCGTTGTTGGCTTTGGCTACTTTGATGTATTT------TCATATTCCACAGAGAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AGTGGGTGGAA-----------------------------T--------------GGGTGGT----TGGGTGGCT-GGCAGGTGGTG---C---AAAATGTGGGGTAAAGCG----A----------G-------------------------------CGAAGGCTACTTTGATGTATTT------TCATATTCCGCCGAGACTCGCGAAGT-GCA-------------------------GGGGGTTGGGTTG------------------------------GGTAGAAAGCAGA-------------------------------------C---------------------------TGCTG-------------------------------------------------------CTGCCACAAGGACGAAAAGGAC-TCTACTCCCTCCACCTC-------------------------TCTCGC----TCTCTCTCTCTCCCT----C----TCTGTTTGGTCAGCAGC-------------CAG--------------------------------------------------------------------TC-----T-ATCTGACATTT-AAAAC--GCTGATTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.GTGGGTGGAA-----------------------------T--------------GGGTGGT----TG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTCTCTCCCT----C----TCTGTT..................................................................................................................................1911.00100000100000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAAAGGAC-TCTACTCCCTCCACC.....................................................................................................................................................................................................2511.00100100000000000000
........GAA-----------------------------T--------------GGGTGGT----TGGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1660.17100000010000000000
droSec2
CGTGGGTGGT------------------------------T--------------GGGTGGT----TGGGTGGCT-GGCAGGTGGTG---C---AAAATGTGGGGTAAAGCG----A----------G-------------------------------CGAAGGCTACTTTGATGTATTT------TCATATTCCGCCGAGACTCGCGAAAT-ACG-----CAGGCTG--TAGAAAGTGCAGGGGGTTTGGTTG------------------------------GGTAGAAAGTAGA-------------------------------------C---------------------------TGCTG-------------------------------------------------------CTGCCACAAGGACGAAAAGGAC-TCTACTCTCTCCCTCTC-------------------------TCCCTC----TCCCTCTCTCTCCCG----C----TCTGTTTGGTCAGCAGC-------------CAG--------------------------------------------------------------------TC-----T-ATCTGACATTT-AAAAC--GCTGATTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.GTGGGTGGT------------------------------T--------------GGGTGGT----TGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2090.2220101
.GTGGGTGGT------------------------------T--------------GGGTGGT----TG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19100.2020011
..TGGGTGGT------------------------------T--------------GGGTGGT----TGGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21130.0810001
dm3
AATGGGTGGAG-----------------------------T--------------GGGTGGT----TGGGTGGTT-GGCAGGTGGTG---C---AAAATGTGGAGTAAAGCG----A----------G-------------------------------CGAAGGCTACTTTGATGTATTT------TCATATTCCGCCGAGACTCGCGAAAT-ACG-----CAGGCTG--TAGAAAGTGCAGGGGGTTTGGTTGGGTTGGTGGTGGGTG------GGG----GAGGTAGAAAGTAGA-------------------------------------C----------------------------------------------------------------------------------------TGCCACAAGGACGAAAAGGAC-TCTACTCTC---------------------------------------------------------T----C----TCTGTTTGGTCAGCAGC-------------CAG--------------------------------------------------------------------TC-----T-ATCTGACATTT-AAAAC--GCTGATTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.ATGGGTGGAG-----------------------------T--------------GGGTGGT----TGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21190.009000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000001000000400000000000000002100000000000001000002100002000000020000002001001200000000000000101110101011004171100004175123221010000000100221000
..TGGGTGGAG-----------------------------T--------------GGGTGGT----TGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20152.00520000000000000000000000000000000000020000000000001000000000000000000000000000000000000000000000000100012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000001300001100000000000001001100000110000200000010000000000000010000010000002402101000362010000011100100000100010
.ATGGGTGGAG-----------------------------T--------------GGGTGGT----TG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20121.00210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000010000001000000000000000000000000000000100000000000000203001000052000000020000000000000000
..........G-----------------------------T--------------GGGTGGT----TGGGTGGTT-GG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................201613.6321800000000000000000000011000000000000300000000000001000100000000000000000000000000000000000000000000002000301000000000000010000000010000000000000000010000000000000000001000000001000000000000000000000000000000000000009212002110000000000041000100010000100010020010000000000000000004000140393120004160125009212110700210150023432033511110
..........G-----------------------------T--------------GGGTGGT----TGGGTGGTT-G.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................191712.6521500000000000000000000000000000000000000000010101000020200000000000000000000000000000000000000000210000001000000000000001000000000000000000000000001200020851000002000000000000000000000000000010000000700000000000000001130800002002000000000000010000100000000000000000000000000000000000046451111001321300331091850332020121103316104121100
..TGGGTGGAG-----------------------------T--------------GGGTGGT----TG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19211.00220000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000205000000000000000000000000000000000000000000000000000000000000100000000010000000000000000000000000000000000000000000000000001000000000000000010000000000000000000000000000000001000000000000001202100000020000001000000000100000000
..........G-----------------------------T--------------GGGTGGT----TGGGTGGTT-GGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21110.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000100002100010200000100000100000
..TGGGTGGAG-----------------------------T--------------GGGTGGT----T...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1827.001400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
.....GTGGAG-----------------------------T--------------GGGTGGT----TGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1816.0060000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000010000000000000002000010000
.....GTGGAG-----------------------------T--------------GGGTGGT----TGGGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000021000000100000000000000000
.ATGGGTGGAG-----------------------------T--------------GGGTGGT----TGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000001000200000000000000
........................................................................................................GTAAAGCG----A----------G-------------------------------CGAAGGCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021000000000
....................................................................................................................................................................................................................T-ACG-----CAGGCTG--TAGAAAGTGCAGGGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................................................................................................................................................................................................AT-ACG-----CAGGCTG--TAGAAAGTGCAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................TGGGTTGGTGGTGGGTG------GGG----GA.....................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000
....................................................................................................................................................................................................................T-ACG-----CAGGCTG--TAGAAAGTGCAGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000
.....GTGGAG-----------------------------T--------------GGGTGGT----TGGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000010000000000
........................................................................................................................................................................................................................................................................................................GA-------------------------------------C----------------------------------------------------------------------------------------TGCCACAAGGACGAAAAGG.......................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
.ATGGGTGGAG-----------------------------T--------------GGGTGGT----T...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
......TGGAG-----------------------------T--------------GGGTGGT----TGGGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000001000000000000000
........................................T--------------GGGTGGT----TGGGTGGTT-GGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2041.7570000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000001200000000000000000100100
.................................................................................................................................................................................................TCCGCCGAGACTCGCGAAAT-ACG-----CAGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................GGT----TGGGTGGTT-GGCAGGTGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................CACAAGGACGAAAAGGAC-TCTACTCT............................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................CGCCGAGACTCGCGAAAT-ACG-----CAGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................CTG--TAGAAAGTGCAGGGGGTTTGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.ATGGGTGGAG-----------------------------T--------------GGGTGGT----TGGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................GAGTAAAGCG----A----------G-------------------------------CGAAGGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................GTAAAGCG----A----------G-------------------------------CGAAGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................AGA-------------------------------------C----------------------------------------------------------------------------------------TGCCACAAGGACGAAAAGGAC-T...................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.ATGGGTGGAG-----------------------------T--------------GGGTGGT----TT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2031.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000
........................................................................................................GTAAAGCG----A----------G-------------------------------CGAAGGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
...................................................................................................................................................................................................................................TG--TAGAAAGTGCAGGGGGTTTGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
............................................................................................................................................................................................................TCGCGAAAT-ACG-----CAGGCTG--TAGAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................GTAAAGCG----A----------G-------------------------------CGAAGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCACAAGGACGAAAAGGAC-TCTACTC.............................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.ATGGGTGGAG-----------------------------T--------------GGGTGGT----TGGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
................................................................................GGTGGTG---C---AAAATGTGGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................T-ACG-----CAGGCTG--TAGAAAGTGCAGGGG............................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....GTGGAG-----------------------------T--------------GGGTGGT----TGGGTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTACTCTC---------------------------------------------------------T----C----TCTGTTTGGTCAGCAGC-------------..........................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................TCGCGAAAT-ACG-----CAGGCTG--TAGAAAGT...................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................C----------------------------------------------------------------------------------------TGCCACAAGGACGAAAAGGAC-TCTAC...............................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTC---------------------------------------------------------T----C----TCTGTTTGGTCAGCAGC-------------CAG--------------------------------------------------------------------TC-----............................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................TGGGTTGGTGGTGGGTG------GGG----GAG....................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
.........................................................................................................................................................................................................GACTCGCGAAAT-ACG-----CAGGCTG--TAGAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................CACAAGGACGAAAAGGAC-TCT.................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
...................................................................................................................................................................................TT------TCATATTCCGCCGAGACTCGCGAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.ATGGGTGGAG-----------------------------T--------------GGGTGGT----TGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.....GTGGAG-----------------------------T--------------GGGTGGT----TGGGTGGTT-A.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
droEre2
TGGG------------------------------------------------------TGGT----GGGG----T-GGCAGGTGGTG---C---AAAGT------------G----A----------G-------------------------------CGGAGGCTACTTTGATGTATTT------TCATATTCCACCGAGACTCGCGAAAT-ACG-----CAGGCCG--GAGAAAGTGCAGTGGCTT-G-GTGGGC-----------GGGGAAGGGCGGC--GGGAAGGAAGCAGA-------------------------------------C---------------------------TGCTG-------------------------------------------------------GCGCCACAAGGACGAAAAGGAC-ACCCATCTC-------------------------------------------------------CCAGT--C----TGAGTTTGGCCAGCATC-------------CCG--------------------------------------------------------------------TC-----T-ATCTGACATTT-AAAAC--GCTGATTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................TG-------------------------------------------------------GCGCCACAAGGACGAAAAGGAC-ACCCA...............................................................................................................................................................................................................2911.0010100000
............................................................................................................................................................................................................................................................GTGGGC-----------GGGGAAGGGCGGC--GGG...................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
.............................................................................................................................................................................................................................................................TGGGC-----------GGGGAAGGGCGGC--GGGA..................................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
............................................................................................................................................................................................................................................................GTGGGC-----------GGGGAAGGGCGGC--G.....................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
.................................................................................................................................................................................ATTT------TCATATTCCACCGAGACTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000
droYak3
TGTGGGTGGTT-------------------------------------------------------TGGGTGGGT-GGCAGGTGGTGGTGC---AGAATGTGGGGTAAAGCGGTAAAGCGGTGGG--G-------------------------------TGAAGGCTACTTTGATGTATTT------TCATATTCCACCGAGACCCGCGAAAA-ACG-----CAGGCTG--GAGAAAGTGCAGAGGCTT-G-ATGGGCAGCAG------GGGGAGGGGTGG----CGAAGAAAGTAGA-------------------------------------C----------------------------------------------------------------------------------------TGCTACAAGGACGAAAAGGAC-TCTGCTCCCTCTCTCTC-------------------------CCTCTC----TCCCTCTCACTC--T----C----TCTGTTTGGTCAGCATT-------------CAG--------------------------------------------------------------------TC-----T-ATCTGACATTT-AAAAC--GCTGATTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................................................................................AGAATGTGGGGTAAAGCGGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
.........................................................................................................................................................................................................................................GAAAGTGCAGAGGCTT-G-ATGGGC................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
..........................................................................................................AAAGCGGTAAAGCGGTGGG--G-------------------------------T..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
..TGGGTGGTT-------------------------------------------------------TGGGTGGGT-GG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2030.33101000000000
droEug1
GATGGGATGGG-----------------------------------------------TGGCTTTTTGGG--GGT-GGCAGGTGGTG---CTGTAAA--GTGGAGTAAAGCG----A----------G----------------------------------TGGCTACTTTGATGTATTT------TCATATTCCACTGAGATTCGCGAAAT-ACG-----CAGGCTGTG--GA---------------------------------------------------GGAGAAAGTAGA------GGGGAAGT--AGGGAGATGCT----------------------------ACGCTACTGCTGCTG-------------------------------------------------------CTGCCGCAAGGACGAAAAGGAC-TCC---------------------------------------------------------------T----C----ACTGTTTGGTCAGCAGT-------------CAGTCAG---------------------------------C-CAGTCTCCCTCTCT--ATCTTTCCCTCTTTC-----C-ATCTGACATTT-AAAAC--GCTGATTSizeHit CountTotal NormTotal
No Reads
droBia1
AGGGGGAGGAG-----------------------------T--------------GGGTGGC----TGGGTGATGGGGCAGGTGGTG---C---AAAGT------------G-----------------------------------------------GAGAGGCTACTTTGATGTATTT------TCATATTCCACTGAGATTCGCGAAAT-ACGCGGCGCAGGCTG--CAGAAAGT--------------------------------------------------------AGAAGTAGA-------------------------------GAAAGGTGG------CGTGTT------------------------------------------------TTTCTCTTTTTTTTTC---CTTTCACAAGGACGAAAGGGAC-TC---------------------------------------------------------------------C----TCTGTTTGGTCAGCAGT-------------CG------------------------------------------------------TC---------GTCGTC-----TCCACTGACATTT-AAAGC--CCTGATTSizeHit CountTotal NormTotal
No Reads
droTak1
AGTTG---------------------------------------------------------------GGTGG---TGCAGGTGGTG---C---AAAGT------------GGGGAG----------G-------------------------------CGGCGGCTACTTTGATGTATTT------TCATATTCCACTGAGATTCGCGAAAT-ACG-----CAGGGTG--G----------------------------------------------------------------------------------------------------------------------C-TGGG------------------------------------------------CTTCTGTTTTTTTTTTTTGTAGCCACAAGGACGCAAAGGAC-TCC---------------------------------------------------------------T----C----TCTGTTTGGTCAGCAGC-------------CAGTCGT---------------------------------CG--------------TC-GCA-----GTCGTC-----T-CACTGGCATTT-AAAAC--GCTGATTSizeHit CountTotal NormTotal
No Reads
droEle1
ATGGTTGG--G-----------------------------T--------------GGGTGGC----TGGTTGGCT-GTGA-------------------------------G----A----------G-------------------------------CGGCGGCTACTTTGATGTATTT------TCATATTCCACTGAGATTCGCAAAAT-ACG-----CAGCCTG--GAGAAAGTGGC---------------------------G----------GCAAGGGGAGAAAGTAGA-------------------------------------C------------------------------------------------------------------------------------------------AGAGGGAAAGGAC-GGTCCGCAC-------------------------------------------------------ACAGTCAGTTAGTCAGT-TAGTCAGA----TATTCAGTCAGTCAGTCAG---------------------------------T-CAGTCAGTCAGTCA--GTCAGTCTCTTTCTC-----T-CTCTGACATTC-AAAAC--GCCGATTSizeHit CountTotal NormTotal
No Reads
droRho1
GCTG------------------------------------------------------------------------------TGGTG---C---AAA--GGCGAATAAAGCG----A----------G-------------------------------GGAAGGCTACTTTGATGTATTT------TCATATTCCACTGAGATTCGCAAAAATACG-----CAGGCTG--GAGAAAGTGAC---------------------------GGGGA---------AAGGGAGAAAGTAGA-------------------------------------CAGAGGGAGTGTTG--------------TGGTG-------------------------------------------------------GTGCCACAACGACGAAAAGGAC-GCC---------------------------------------------------------------A----C----TCTGTTTGGTCAGCAGC-------------CAA--------------------------------------------------------------------TC-----T-CTCTGACATTT-AAAAC--GCTGATTSizeHit CountTotal NormTotal
No Reads
droFic1
GTG-G----------------------------------------------------ATTGT----TGGGCGG---GGCAGGTG------------------------------------------------------------------------------GGGCTACTTTGATGTATTT------TCATATTCCACCGAGACTCGCGAAAA-ACG-----CAGGCAGCGGAGAAG--------------------------------G---------------GGGAGAAAGTAGA-------------------------------------C--------------------------------------------------------------------------------------------ACAAGGACGAAAAGGACCTCC---------------------------------------------------------------T----C----GCTTTCTGGTCAGCAACATTTT--------CAG--------------------------------------------------------------------TT-----T-CTCTGACATTT-AAAAC--GCTGATTSizeHit CountTotal NormTotal
No Reads
droKik1
AAATGGG-----------------------------------------------------------------------------------------AATATGGAGAAAAGCG--------------------------------------------------AGGCTACTTTGATGTATTT------TCATATTCCGCCGAGATTCGCAAGAG--------------------------------------------------------------------------GATAAAAT------------------TTATAA--AGGCAAGAAG--------------------------------------------------------GAC-GAGGCACAAGAG---------------------------------------------C---------------------------------------------------------------T----C----TTTATTTGGTCAGCAGA-------------AG-TAGGAAAAAGCTGAAGTAAAAAGCAAAAGCAAGAAGCAA--------------A-AGCAGGTTCTTCCCC-----G-CGCTGACATTT-AAAACTTTTTGATTSizeHit CountTotal NormTotal
No Reads
droAna3
TGGTTTA-----------------------------------------------------------------------CAGG-----------------------------G-----------------------------------------------GGTGAACTACTTTGATGTGTTTTTTTTTTTGTATTTCTCTTGGGATTCTGAAGG-ACA-----CAAGAG-AGAGTTAG--------------------------------A---------------GGGAG---------------------------------------------------------------------------------------------------------------------------------------------AGGGCGAATAAAAT-TCTAAACATTTGATTTT-------------------------ATTATT----TTTTTTAGACTCCTT----T----TTGGATAGACTCACCCC-------------CTA--------------------------------------------------------------------ACTCGCGG-GTCTTTTATTT-TAATT--AC--ATTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
dp5
GGTAGAGAGAA-----------------------------A--------------GAGAGG--------------------------------------------------TCCAGGCCCACTGGGCGGGGAAGGGGGATTGGG---------------GGCTGGCTACTTTGATGTATTT------TCATATTCCGCTGAGATTCGCGAGCC-ACG-----CAATGAGTG-----------------------------------------------------------------GGAGTGGAGGAGTGGTTCTGGAAAATGCCAGGGAGTGG-CAGGGGCAG---------------------TGG---------------CAGTGACAGTGGCAGAAGAGCT---------------------------------------C-TCTCTTCTCTCCCCCTC-------------------------TCGC------TC----CCGCTGCCA--CTCTTCGTCTGTTTGGTCAGCATT-------------CAGCATT---------------------------------CA--------------TC---------GTTGTA-----T-GTCTGACATTTCGAAAC--GCTGATTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....................................................................................................................................................................................................................................GTG-----------------------------------------------------------------GGAGTGGAGGAGTGGTT.........................................................................................................................................................................................................................................................................................................................................................2014.0040200010001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCGTCTGTTTGGTCAGCATT-------------CAGC......................................................................................................2611.0010010000000
.....................................................................................................................................................................................................................................................................................................................................................CAG---------------------TGG---------------CAGTGACAGTGG.......................................................................................................................................................................................................................................................................1890.1110100000000
droPer2
GGTAGAGAGAA-----------------------------A--------------GAGAGG--------------------------------------------------TCCAGGCCCACTGGGCGGGGAAGGGGGATTGGG---------------GGCTGGCTACTTTGATGTATTT------TCATATTCCGCTGAGATTCGCGAGCC-ACG-----CAATGAGTG-----------------------------------------------------------------GGAGTGGAGGAGTGGTTCTGGAAAATGGCAGGGAGTGG-CAGTGGCAG---------------------TGG---------------CAGTGACAGTGGCAGAAGAGCT---------------------------------------C-TCT-CTCTC----TCTC-------------------------CCCCTCTCGCTC----CCGCTCCCA--CTGTTCGTCTGTTTGGTCAGCATT-------------CAGCATT---------------------------------CA--------------TC---------GTTGTA-----T-GTCTGACATTTCGAAAC--GCTGATTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....................................................................................................................................................................................................................................GTG-----------------------------------------------------------------GGAGTGGAGGAGTGGTT.........................................................................................................................................................................................................................................................................................................................................................2012.002000002
.........................................................................................................................................................................................................................................................................................................................................AGTGG-CAGTGGCAG---------------------TGG---------------CA.................................................................................................................................................................................................................................................................................19200.051010000
droWil2
AGCGTAAGGAG-----------------------------A--------------GGGGGG---------------------TGGGG---A---CAAAT------------G-----------------------------------------------GTGGGGCTACTTTGATGTAGATTT-TCATCATATTCCACTGAGACGAACAAGTG-----------GAGAGAGAAAGAG--------------------------------A---------------GGGAGA------------------------------CGGCCTGAAGTGAAC-----GCATGTTGGC-AAAG-------TGCTGCTGATGGGGGCGTGGCATCATCAGC--------ATCC---------------------------------------A-T---CCCCC-CC-CCCCNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCC----CCCCCCCCCCTCCCT----CTTAGTGTGTTTGGTCAGCATT-------------CA---------------------------------------------------------------------------------TGACATTT-AA-AT--GTTGATTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................................................................................G---A---CAAAT------------G-----------------------------------------------GTGGGGCTACTTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000
droVir3
GCCGGCGAATG---T-----------------------AGA--------------ATGAGAT----TGGG--AA--TGAAAATGAGG---C---TGAGC------------TGAAGAGCAACAGCGAGAGCGGACGCGAATGAGGCTGTCCGTTGTTGGCTTTGGCTACTTTGATGTATTT------TCATATTCCACAGAGACGAGCCAAAC-GCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
-------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCTACTTTGATGTATTT------TCATATTCCACAGAGACGAGCCGAAC-GCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
AGGGGGATACGACGTATCGTGGGCACAGGACAAGGACGAGAATGAGTTTTACGTTGG----------GACTGACT-GAGAGAATGAGGACC---AGAAT------------G------------------------------AGGCCG-CCGTTGTTGGCTTTGGCTACTTTGATGTATTT------TCATATTCCACAGAGAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 03:36 PM