ID:

dsi_13457

 Coordinate:

2r:14376394-14376656 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-27.2 -27.2 -27.1

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
(CATATA)nSimple_repeatSimple_repeat+
Gypsy-22_DWil-I-intLTRGypsy-
(TA)nSimple_repeatSimple_repeat+
(CATATA)nSimple_repeatSimple_repeat+

Sense Strand Reads

GACGTATTAATCAAATTGAAACCAAGATTACGGAACCCGCTAACTGATAAGTATGTTTAAACGTAATCATAAACCGCAACGTAACAGAAATACTTTTTCCAAAAAACATTACAAAAAAAAAAAAGAAGGAAAGAAACCAAAAAATCTTTTTAAACGTATTACATACATAAACTTTATAAACTTATATATACAACACACCAGCATATATATATATATATATATATATAGCGGAAATACATATATATATATATATATATATATAAATACGGATATATAGAGACATTTAACATGACTAGTTTTGAAATCGTTTTAGGTCATACGAGTAATGACATCGAAGCATTTTGTAAATACAACAGCAGACGG
***************************************************************************************************************************.....................(((((.((..((((((..............((((....)))).................((((((((((((((((((((((((...........))))))))))))))))))))))))))))))..))...)))))....******************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
.....................................................................................................................................................................................................................................................................................................TAGTTTTGAAATCGTTTTAGGTCATA............................................ 26 0 1 3.00 3 2 0 1 0 0 0 0 0 0
..........TCAAATTGAAACCAAGATTACGGAACC...................................................................................................................................................................................................................................................................................................................................... 27 0 1 2.00 2 0 2 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................TATAAATACGGATATATAGAGACATT............................................................................... 26 0 1 2.00 2 0 2 0 0 0 0 0 0 0
...........................TTACGGAACCCGCTAACTGATAAGTA...................................................................................................................................................................................................................................................................................................................... 26 0 1 2.00 2 1 0 0 0 0 1 0 0 0
...........................................................................................................................................................................................................................................................................................................TGAAATCGTTTTAGGTCATACG.......................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0
........................................TAACTGATAAGTATGTTTAAACGTAAT........................................................................................................................................................................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................TGAAACCAAGATTACGGAACCCGC................................................................................................................................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................................................................................................................TGACTAGTTTTGAAATCGTTTTAGGT................................................ 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................ATACGGATATATAGAGAC.................................................................................. 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................................................................................................................TACGGATATATAGAGACATTTAACA.......................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...............TTGAAACCAAGATTACGAAACCCG.................................................................................................................................................................................................................................................................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................TAAATACGGATATATAGAGACATTT.............................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................TACGGATATATAGAGACATTTAAC........................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...............TTGAAACCCAGATTACGGAACCCGCTAAC............................................................................................................................................................................................................................................................................................................................... 29 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................TTTAACATGACTAGTTTTGAAATCGT....................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................TACGGATATATAGAGACATTTAACATGAC...................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....ATTAATCAAATTGAAACCAA.................................................................................................................................................................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0
...............TTGAAACCAAGATTACGGAACCCGCT.................................................................................................................................................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................ATAGATACGGATATATAGAGAC.................................................................................. 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................................................................................ACGGATATATAGAGACATTTAACATGA....................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................AGAAGGAAAGAAACCAAAAAATC......................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 1 0 0
...........................TGACGGAACCCGATAACTGG............................................................................................................................................................................................................................................................................................................................ 20 3 7 0.86 6 6 0 0 0 0 0 0 0 0
.........................GAAGTCGGAACCCGCTAA................................................................................................................................................................................................................................................................................................................................ 18 3 20 0.20 4 0 0 0 0 0 0 0 3 1
..........................CTGACGGAACCCGATAACTG............................................................................................................................................................................................................................................................................................................................. 20 3 5 0.20 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................AAAGAAGAAAAGAAACC................................................................................................................................................................................................................................. 17 1 14 0.07 1 0 0 1 0 0 0 0 0 0
...GTATTAATAAAATCGGAACC.................................................................................................................................................................................................................................................................................................................................................... 20 3 17 0.06 1 0 0 0 1 0 0 0 0 0
....................................................................................................................AAAAAAAAGAAGGAA........................................................................................................................................................................................................................................ 15 0 20 0.05 1 0 0 0 0 0 1 0 0 0
...............................GGAACCCGCTAAGTA............................................................................................................................................................................................................................................................................................................................. 15 2 20 0.05 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................ACATGACTAGGATTGA............................................................. 16 2 20 0.05 1 0 0 0 0 0 0 0 1 0
..................................................................................................................AAAAAAAAAAGAAGGAA........................................................................................................................................................................................................................................ 17 0 20 0.05 1 1 0 0 0 0 0 0 0 0
...........................................................................................................ATTACAAAAAAAAAAA................................................................................................................................................................................................................................................ 16 0 20 0.05 1 0 0 1 0 0 0 0 0 0
.......................AAGATTCCGGAACCT..................................................................................................................................................................................................................................................................................................................................... 15 2 20 0.05 1 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

CTGCATAATTAGTTTAACTTTGGTTCTAATGCCTTGGGCGATTGACTATTCATACAAATTTGCATTAGTATTTGGCGTTGCATTGTCTTTATGAAAAAGGTTTTTTGTAATGTTTTTTTTTTTTCTTCCTTTCTTTGGTTTTTTAGAAAAATTTGCATAATGTATGTATTTGAAATATTTGAATATATATGTTGTGTGGTCGTATATATATATATATATATATATATCGCCTTTATGTATATATATATATATATATATATATTTATGCCTATATATCTCTGTAAATTGTACTGATCAAAACTTTAGCAAAATCCAGTATGCTCATTACTGTAGCTTCGTAAAACATTTATGTTGTCGTCTGCC
*******************************************************************************.....................(((((.((..((((((..............((((....)))).................((((((((((((((((((((((((...........))))))))))))))))))))))))))))))..))...)))))....*************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 M024
male body		 M053
female body
..........................GACTGCCTTGGGCTATTGAC............................................................................................................................................................................................................................................................................................................................. 20 3 5 0.60 3 3 0 0 0 0 0 0
..........................................................................................................................................................................................ATATGTTGTGTGCTC.................................................................................................................................................................. 15 1 7 0.14 1 0 0 1 0 0 0 0
..........................................................................................................................................................................................................................................................................................AAATTTTTCTGATCAAATCTT............................................................ 21 3 9 0.11 1 0 0 0 1 0 0 0
............................................................................................GAACAAGGTTTTTAGTAAT............................................................................................................................................................................................................................................................ 19 2 10 0.10 1 0 0 0 0 1 0 0
...................................................ACGCAAATTTGCATTAGAAT.................................................................................................................................................................................................................................................................................................... 20 3 18 0.06 1 0 1 0 0 0 0 0
...................................................................................................................................................AAAATTTGCATTATGAAT...................................................................................................................................................................................................... 18 2 20 0.05 1 1 0 0 0 0 0 0
......................................................................................................................TGTTTTCTTCCTTGTTTTGGTT............................................................................................................................................................................................................................... 22 3 20 0.05 1 0 1 0 0 0 0 0
...............................CGTTGGGCCATTGACTAC.......................................................................................................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 1 0
................................................................................................................TCTTTTTTTTTTCTTCCT......................................................................................................................................................................................................................................... 18 1 20 0.05 1 0 0 0 0 0 0 1
..................................................................................................................................................AAAAATTTGCATTATGAA....................................................................................................................................................................................................... 18 2 20 0.05 1 0 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:14376344-14376706 + dsi_13457 GACGTATTAA-TCAAATTGAAACCAAGATTACGGAACCCGCTAACTGATA--------------AGT-------ATGTTTAAACGTAA-TCATAAACCGCAA-----------------------CGTA-ACAG-AAATAC------------------------------------------------------------------------------------------------------------------------------------------------TTTTTCCAAA----AAA-----C----ATTAC--------------------AAA---AAAAAAAA-AG--A---------------------A----GGAAA-------GAAACCA--AAAAATCTTTTT---AAACGTATTACA------------------------------------------------------------------T------ACATAAACTTTATAAACT-----TATATATACA-ACACACCAGCATATATATATATATATATATATATAGCGGAAATACATATATATATAT--AT--A-------------------TATA------TATATAAATACG---GATATATAGAGACATTTAACATGACTAGTTTTGAA---ATCGTTTTAGGTCAT----------------------------------------------------------------------ACGAGTAATGACATCGAAGCATT-TTGTAAATACAACAGCAGACGG---------
droSec2 scaffold_1:11182658-11182983 + GACGTATTAA-TCAAATTGAAACCAAGATTACGGAACCCGCTAACTGATA--------------AGT-------ATATTTAAACGTAA-TCATAAACCGCAA-----------------------CGTA-ACAG-AAATAC------------------------------------------------------------------------------------------------------------------------------------------------TTTTTCCAAA----AAA-----C----ATTAC--------------------AAA---AAAA---A-AG--A---------------------A----GGAAA-------GAAACCA--AAAAATCTTTTT---AAACGTATTACA------------------------------------------------------------------T------ACA---------TAAACT-----TATATATACA-ACACACCAGCATATATATATATATAT-------------------------------------ATAT------ATA-----TATATA------TATATAAATACG---GATATATAGAGACATTTAACATGACTAGTTTTGAA---ATCGTTTTAGGTCAT----------------------------------------------------------------------ACGAGTAATGACATCGAAGCATT-TTGTAAATACAACAGCAGACGG---------
dm3 chr2R:13685743-13685972 + GACGTATTAA-TCAAATTGAAACCAAGATTACGGAACCCGCTAACTGATA--------------AGT-------ATGTTTAAACGTAA-TCATAAACCGCAA-----------------------CGTA-ACAG-AAATAC------------------------------------------------------------------------------------------------------------------------------------------------TTTTTCCAAA----AAAA----C----ATTAC--------------------AAA---AAA----A-AG--A---------------------A----GGAAA-------GAAACCA--AAAAATCTTTTT---AAACGTATTACA------------------------------------------------------------------T------ACATAAACTTTATAAACT-----TATATATACA-ACACACCAGCATATATATATATATAT-------------------------------------A--------------------------------------------------TATATATA---------------------------------------------------------------------------------------------------------------------------------------GTAAA--------------A---------
droEre2 scaffold_4845:7913315-7913633 + GACGTATTAA-TCAAATTGAAACCAAGATTACGGATCCCGCT-ACTGATA--------------AGT-------ATGTTTAAACGTAA-TCATAAACCGCAA-----------------------CGTA-ACAG-AAATAC------------------------------------------------------------------------------------------------------------------------------------------------TTTTTCCAAA----AAA-----C----ATTAC--------------------AAA---AAA--------------------------------A----GAAAG-------AAAACCA--AAAAATCTTTTT---AAACGTATTACA------------------------------------------------------------------T------ACATA-ACTTTAAAAACT-----TATACATATATACACAGCAGCATATA---------------------------------TATATATAAAC----A--T------ATA-----TATAAA--------------TACG---GATATATAGAGACATTTAACATGACTAGTTTTGAA---ATCGTTTTAGGTCAT----------------------------------------------------------------------ACGAGTAATGACATCGAAGCATT-TTGTAAATACAACAGCAGACGG---------
droYak3 2R:15497547-15497871 - GACGTATTAA-TCAAATTGAAACCAAGATTACGGAACCCGCTAACTGATA--------------AGT-------ATGTTTAAACGTAA-TCATAAACCGCAA-----------------------AGTA-ACAG-AAATAC------------------------------------------------------------------------------------------------------------------------------------------------TTTTTCCAAA----CAAAAAACC----ATTAC--------------------AAA---AAA--------------------------------A----GAAAG-------AAAACCA--AAAAATCTTTTT---AAACGTATTACA------------------------------------------------------------------T------ACATA-ACTTTAAATACT-----TATATAT----ACACAGCAGCATATA---------------------------------TATATATAAATAT--ATAT------ATA-----TATAAA--------------TACG---GATATATAGAGACATTTAACATGACTAGTTTTGAA---ATCGTTTTAGGTCAT----------------------------------------------------------------------ACGAGTAATGACATCGAAGCATT-TTGTAAATACAACAGCAGACGG---------
droEug1 scf7180000409672:1420508-1420851 - GACGTATTAA-TCAAATTGCAACAAAGATTACGGAACCCGCTAACCGATA--------------AGT-------AAATTTAAACGTAA-TCATAAACCGCAA-----------------------CGTA-ACAG-AAATAC------------------------------------------------------------------------------------------------------------------------------------------------TTTTTCCAAC----AAA-----CAAAAATTACAAACCAAAAAAAAAAATCCCAAA---AAAAA----AA--A------------A-------TA----GAAAG-------AAAACCA--AAAAATCTTTTT---AAACGTATTGCA------------------------------------------------------------------T------ACATA-ACTTTATAAACT-----TATATATATATACACAA----ACAGG---------AT-----------------ATA--TACAT--------------------ATA-----TATATA--------------TTCG---GATATATAGAGACATTTAACTTGACTAGTTTTGAA---ATCGTTTTAGGTCAT----------------------------------------------------------------------ACGAGTAATGACATCGAAGCATT-TTGTAAATACAACAGCAGACGG---------
droBia1 scf7180000301754:2887257-2887560 - GACGTATTAA-TCAAATTGCAACAAAGATTACGGAACCCGCTAACCGATA--------------AGTTAACTATAACTTTAAACGTAA-TCATAAACCGCTA-----------------------CGTA-ACAG-AAATAC------------------------------------------------------------------------------------------------------------------------------------------------TTTTTCCAAA----AAAA----------TAAC--------------------AAA---AAAA-----AGTGA---------------------A----GAAAC-------AAAACCA----AAATCTTTTT---AAACGTATTACA------------------------------------------------------------------T------ACATA-ACTTTATAAAAT-----TATAT------ACACACCAGCATATA---------------------------------T-------------------------------------G--------------TACG---GATATATAGAGACATTTAACTCGACTAGTTTTGAA---ATCGTTTTAGGTCAT----------------------------------------------------------------------ACGAGTAATGACATCGAAGCATT-TTGTAAATACAACAGCAGACGG---------
droTak1 scf7180000415795:4809-5114 + GACGTATTAA-TCAAATGGCAACAAAGATTACGGAACCCGCTAACCGATA--------------AGT-------AAATTTAAACGTAA-TCATAAACCGCTA-----------------------CGTA-ACAG-AAATAC------------------------------------------------------------------------------------------------------------------------------------------------TTTTTCCAAA----AAA-----------TAAC--------------------AAA---AAA--------------------------------A----GAAAC-------AAAACA----AAAATCTTTTT---AAACGTATTACA------------------------------------------------------------------T------ACATA-ACTTTATAAAAT-----TATATAT----ACACACCAGCATATA---------------------------------TATATT------------G------ATA-----TATATA--------------TACG---GATATATAGAGACATTTAACTTGACTAGTTTTGAA---ATCGTTTTAGGTCAT----------------------------------------------------------------------ACGAGTAATGACATCGAAGCATT-TTGTAAATACAACAGCTGACGG---------
droEle1 scf7180000491214:559002-559296 - GACGTATTAA-TCAAATTGCAACAAAGATTACGGAACCCGCTAAACGATA--------------AGT-------AAATTTAAACGTAA-TCAGAAACCGCAA-----------------------CGTA-ACAG-AAATAC------------------------------------------------------------------------------------------------------------------------------------------------TTTTTCCAAA----AAAA---------AAAAC--------------------A------------A-AA--A---------------------T----GAAAC-------AAAACAA--AAAAATCTTTTT---AAACGTATTACA------------------------------------------------------------------T------A-----AATTTATAAAAT-----TATATAT----ACAAACCAGCTTATA---------------------------------T---------------------------------ATATA--------------TACG---GATATATAGAGACATTTAACGTGACTAGTTTTGAA---ATCGTTTTAGGTCAT----------------------------------------------------------------------ACGAGTAATGACATCGAAGCATT-TTGTAAATACCACAGCAGACGG---------
droRho1 scf7180000777956:97705-98016 - GACGTATTAA-TCAAATTGCAACAAAGATTACGGAACCGGCTAACCGATA--------------AGT-------TAATTTAAACGTAA-TCATAAACCGCAA-----------------------CGTA-ACAA-AAATAC------------------------------------------------------------------------------------------------------------------------------------------------TTTTTCCAAA----AAAA----------TAAC--------------------AAA---AAA-------------------------------------AACAT-------AAAACAA--AAAAATCTTTTT---AAACGTATTACA------------------------------------------------------------------T------A-----AATTTATAAAAT-----TATATAT----AAACACCAGCATATA---------------------------------TATATATAT--AT--ATAT------ATA-----TATATA--------------TCCG---GATATATAGAGACATTTAACTTGACTAGTTTTGAA---ATCGTTTTAGGTCAT----------------------------------------------------------------------ACGAGTAATGACATCGAAGCATT-TTGTAAATACCACAGCAGACGG---------
droFic1 scf7180000453948:1762881-1763176 - GACGTATTAA-TCAAATTGCAACAAAGATTACGGAACCCGCTAACCGATA--------------AGT-------AAATTTAAACGTAA-TCATAAACCGCAA-----------------------CGTA-ACAG-AAATAC------------------------------------------------------------------------------------------------------------------------------------------------TTTTTCCAAA----AAAA----------TACC--------------------AAA---AAAAA----AC--A---------------------A----GCAAG-------AAAACAA--AAAAATCTTTTT---AAACGTATTACA------------------------------------------------------------------T------A-----AATTTATAAAAT-----TATATAT----ACACACCAGCATATA---------------------------------T-------------------------------------A--------------TACG---GATATATAGAGACATTTAACTTGACTAGTTTTGAA---ATCGTTTTAGGTCAT----------------------------------------------------------------------ACGAGTAATGACATCGAAGCATT-TTGTAAATACCACAGCAGACGG---------
droKik1 scf7180000302385:451220-451529 + GACGTATTAA-TCAAATTGCGACAAAGATTACGGAACCCGCTAACCGATA--------------AGT-------AAACTTAA------------------------------------------------ACAG-AAATAC------------------------------------------------------------------------------------------------------------------------------------------------TTTTTCCAAA----CAA-----C----CG-------------------------AAAAACA----A-AG--A---------------------A----G---T-------GAAACCAAAAAAAATCTTTTT---AAACGTATTACA------------------------------------------------------------------T------A-----AATTTATAAACT-----TATATATATATACACACCAGCATATA---------------------------------TATATA--AAT-T--ATAC------AGA-----TATATA--------------TACAGAAGATATATAGAGACATTTAACTTGAATAGTTTTGAAGAAATCGTTTTAGGTCAT----------------------------------------------------------------------ACGAGTAATGACATCGAAGCATT-TTGTAAATACCACAGCAGACGGCAAAACACA
droAna3 scaffold_13266:10500510-10500822 - GACGTATTAA-TCAAATTGCAACAAAGATTACGGATCCCGCTAACCGTTA--------------AGT-------AACTTAAACAGT-------AAACCACA--------------------------------------AC------------------------------------------------------------------------------------------------------------------------------------------------TTTTTCCAAA----AAAA-----------AAC--------------------AAA---AGA----AAAATGCA--------------------A----AAAAG-------AAAACCA-ACAAAATCTTTTT---AAACGTATTACA------------------------------------------------------------------T------A-----AATTTATAAAAT-----TATAT------ACACACCAGCATATACATATATATAT-----------------------------AGAT----A--TATATATATATATATTATATA--------------TACG---GATATATAGAGACATTTAACTTGACTAGTTTTGAA---ATCGTTTTAGGTCAT----------------------------------------------------------------------ATGAGTAATGACATCGAAGCATT-TTGTAAATACCACAGCCGATGA---------
droBip1 scf7180000396428:922132-922415 - GACGTATTAA-TCAAATTGCAACAAAGATTACGGATCCCGCTAACCGTTA--------------AGT-------ACATTTAACAGTA-------AACCACA--------------------------------------AC------------------------------------------------------------------------------------------------------------------------------------------------TTTTTCCAAA----AAA----------------------------------------------------------------------------A----GAAACAAAAACAAAAACCA--AAAAATCTTTTT---AAACGTATTACA------------------------------------------------------------------T------A-----AATTTATAAAAT-----TATAT------ACACACCAGCATATA---------------------------------TATATA--------------------TATAAATTATATA--------------TACA---GATATATAGAGACATTTAACTTGACTAGTTTTGAA--AATCGTTTTAGGTCAT----------------------------------------------------------------------ATGAGTAATGACATCGAAGCATT-TTGTAAATACCACAGCCGATGA---------
dp5 3:16497039-16497429 + GACGTATTAA-TCAAATTGCATCAGAGATAACGGAACC-GACAACAGTACAGTACGAATGCGAGAGT-------ACATT-CAACGTAAACCGTAAACCGTAAACCGTAAACCGTAAACCTTGAACCGTAAACAA-AAATAC------------------------------------------------------------------------------------------------------------------------------------------------TTTTTCCAGA----AAA-----------------------------------------------------------------------------------ACC-------AAAACCA--AATGAACTTTTT---AAACGTATTACA------------------------------------------------------------------T------A-----ACTTTATATTA-------ATATAT----ACATAC---------------------------------------------------------------------A-----TATATACACGCATATATA-GTACT---TATATACAAAACCATTTAACTTAATTAGTTTTGAA---AACGAT-TAGGTCATATATGCCTACATATGTCTGTATATATATAAATACTAGCCCTATTATTTATATGCATACATATGTACATATATGAGTGACGACATCGAAGCATTTTTGTAAATACCACAACAGACAG---------
droPer2 scaffold_4:264629-265010 - GACGTATTAA-TCAAATTGCATCAGAGATAACGGAACC-GACAACAGTACAGTACGAATGCGAGAGT-------ACATT-CAACGTAAACCGTAAACCGTAA-------ACCGTAAACCTTAAACCGTAAACAA-AAATAC------------------------------------------------------------------------------------------------------------------------------------------------TTTTTCCAGA----AAA-----------------------------------------------------------------------------------ACC-------AAAACCA--AATGAACTTTTT---AAACGTATTACA------------------------------------------------------------------T------A-----ACTTTATATTAA-----TATATA-----------------------------------------------------------------------T------ATA-----TATATACACGCATATATA-GTACT---TATATACAAAACCATTTAACTTAATTAGTTTTGAA---AACGAT-TAGGTCATATATGCCTACATATGTCTGTATATATATAAATACTAGCCCTATTATTTATATGCATACATATGTACATATATGAGTGACGACATCGAAGCATTTTTGTAAATACCACAACAGACAG---------
droWil2 scf2_1100000004558:2114183-2114477 + GATGTATTAA-TCAAATTGAAT--------------------------------------------------------------------------------------------------------GAA-ACA-----------------------------------------------------------------AACAAAAAAAAAAGGAAGAAAAAAAACAAACAAACCA--TACAAAACAAAACAAAACAAGAAACAAAGAAAGGAAAATATGCAAAACTTTTTCCAACCAAAAAA-----------------------------------------------------------------------------------ACC-------GAAAACA--AAACATTTTTAA---AAACGTATTACA------------------------------------------------------------------T------A-----CATTTATA---TTAACGTATATAT----ACAC----GCACATA---------------------------------TATATG------------------------------------------------------TATATATA----TATTTAACTTAATTAGTTTTGAA---AACGTTTTAGGTCATAC------------------------------------------------------------------ATATGAGTAACGACATCGAAGCATT-TTGTAAATACAACAACAGA------------
droVir3 scaffold_13049:109806-110088 + TATATACTAAATTAAATTTAAATTAAAATTAAAATTAAAACTAAA---------------------T-------AAAATTAA------------------------------------------------ATAATAATTGTAATCATTATTCTTCCACTTCAAACGTTTGAAATGTGTAATTTTTTAATTCAATAACAAATAACAAAAAAAAAAAATACAAAACTAAACAAATTAATTA-----GACAACAAATTTAGAAGCAACA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACAAC---TAAACATA-----CATATATATACA-----TATAT------ACATAG------------------------------TGCATAGATAAATATATATAAAT----A--T------ATA-----TATATA------------TATATA---TATATATATATATATTC------------------------------------------------------------------------------------------------------------------------------------------------------GA---------
droMoj3 scaffold_6496:11049688-11050016 - GACGTATTAA-TCAAATTGAAACCAAAACAA----------------------------------------------------------------A---CAA---------------C-------TTTA-ACGC-AAATAC---------------------------------------TTT-----TCCAA-----------------------------------------A--AACAA----------------------------------------------------------AA-----C----AAAAC--------------------AAA---ACA----AAAATGCGAAAACCAAAGAA--------A----ACAAG-------AAAATAA--GCAAACATTTTTAAAAAACGTATTATACTTAACATTTATACTTGTAACTTAATTAGTCTTGAAAAACATTTTAGATCATATAAAAACAAATCAC------A-----AATATATATATT-----TATATATATATATATAT----ATATA---------------------------------TATATATAT--ATATA--T------ATA-----TATATA--------------TATA---TATATATATATATA------------------------------------TAT----------------------------------------------------------------------ATGACTAGCAACATCGAAGCATT-CTGTAAATAAAAAAAAATACAA---------
droGri2 scaffold_14624:446859-447164 - AACATACTTATATATATTAAAAACAT------------------------------------------------------AAACATAA-ATATAAACATATG--------------------AATAATA-ACAAAAAATACTACTAC--------------------------------ATACTTATATACGGATATAA-----------------------------------------------------------------------------------------------------------------ACCATAAATACA--TAAAATACTTTAAA---AAAAA----AT--A------------ACCGTTTACAGCAAGAAAA-------TTAATTA--TGGAATCTTA---------------------ATGTTGATATCAATGTACTTAGTGATTGAATGTG-----------------------------------ACATG-CTTCGAAA---------TACATAT----ATACATATACATATATGTATATA-------------------------TATATA--------------------TACATACTACAGA----------TATATATA---TATATATAT--------------------------------------------------------------------------------------------------------------------ACACACCTACATAAAAATAGT-ATTTACATACA--------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GACGTATTAA-TCAAATTGAAACCAAGATTACGGAACCCGCTAACTGATA--------------AGT-------ATGTTTAAACGTAA-TCATAAACCGCAA-----------------------CGTA-ACAG-AAATAC------------------------------------------------------------------------------------------------------------------------------------------------TTTTTCCAAA----AAA-----C----ATTAC--------------------AAA---AAAAAAAA-AG--A---------------------A----GGAAA-------GAAACCA--AAAAATCTTTTT---AAACGTATTACA------------------------------------------------------------------T------ACATAAACTTTATAAACT-----TATATATACA-ACACACCAGCATATATATATATATATATATATATAGCGGAAATACATATATATATAT--AT--A-------------------TATA------TATATAAATACG---GATATATAGAGACATTTAACATGACTAGTTTTGAA---ATCGTTTTAGGTCAT----------------------------------------------------------------------ACGAGTAATGACATCGAAGCATT-TTGTAAATACAACAGCAGACGG---------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTTTTGAA---ATCGTTTTAGGTCAT----------------------------------------------------------------------A......................................................2613.00300000012000000000
...........TCAAATTGAAACCAAGATTACGGAACC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.00200000000000020000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAATACG---GATATATAGAGACATT..................................................................................................................................................................2612.00200000000000020000
............................TTACGGAACCCGCTAACTGATA--------------AGT-------A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.00200000001100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAA---ATCGTTTTAGGTCAT----------------------------------------------------------------------ACG....................................................2211.00100100000000000000
.........................................TAACTGATA--------------AGT-------ATGTTTAAACGTAA-T..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000001000000000
.................TGAAACCAAGATTACGGAACCCGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACTAGTTTTGAA---ATCGTTTTAGGT................................................................................................................................2611.00100000010000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACG---GATATATAGAGAC.....................................................................................................................................................................1811.00100100000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACG---GATATATAGAGACATTTAACA.............................................................................................................................................................2511.00100000001000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAATACG---GATATATAGAGACATTT.................................................................................................................................................................2511.00100000001000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACG---GATATATAGAGACATTTAAC..............................................................................................................................................................2411.00100000000000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAACATGACTAGTTTTGAA---ATCGT.......................................................................................................................................2611.00100000010000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACG---GATATATAGAGACATTTAACATGAC.........................................................................................................................................................2911.00100000001000000000
.....ATTAA-TCAAATTGAAACCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010000000000000
................TTGAAACCAAGATTACGGAACCCGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACG---GATATATAGAGACATTTAACATGA..........................................................................................................................................................2711.00100000001000000000
................................................................................................................................................................................................................................................................................................................................................................AG--A---------------------A----GGAAA-------GAAACCA--AAAAATC.............................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000000001000000
........................................................................................................................................................................................................................................................................................................................................................AAAAAAA-AG--A---------------------A----GGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................15200.05100000000100000000
...................................................................................................................................................................................................................................................................................................................................................A---AAAAAAAA-AG--A---------------------A----GGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................17200.05100000001000000000
........................................................................................................................................................................................................................................................................................................................ATTAC--------------------AAA---AAAAAAAA-........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................16200.05100000010000000000
droSec2
GACGTATTAA-TCAAATTGAAACCAAGATTACGGAACCCGCTAACTGATA--------------AGT-------ATATTTAAACGTAA-TCATAAACCGCAA-----------------------CGTA-ACAG-AAATAC------------------------------------------------------------------------------------------------------------------------------------------------TTTTTCCAAA----AAA-----C----ATTAC--------------------AAA---AAAA---A-AG--A---------------------A----GGAAA-------GAAACCA--AAAAATCTTTTT---AAACGTATTACA------------------------------------------------------------------T------ACA---------TAAACT-----TATATATACA-ACACACCAGCATATATATATATATAT-------------------------------------ATAT------ATA-----TATATA------TATATAAATACG---GATATATAGAGACATTTAACATGACTAGTTTTGAA---ATCGTTTTAGGTCAT----------------------------------------------------------------------ACGAGTAATGACATCGAAGCATT-TTGTAAATACAACAGCAGACGG---------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
....................AACCAAGATTACGGAACCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
dm3
GACGTATTAA-TCAAATTGAAACCAAGATTACGGAACCCGCTAACTGATA--------------AGT-------ATGTTTAAACGTAA-TCATAAACCGCAA-----------------------CGTA-ACAG-AAATAC------------------------------------------------------------------------------------------------------------------------------------------------TTTTTCCAAA----AAAA----C----ATTAC--------------------AAA---AAA----A-AG--A---------------------A----GGAAA-------GAAACCA--AAAAATCTTTTT---AAACGTATTACA------------------------------------------------------------------T------ACATAAACTTTATAAACT-----TATATATACA-ACACACCAGCATATATATATATATAT-------------------------------------A--------------------------------------------------TATATATA---------------------------------------------------------------------------------------------------------------------------------------GTAAA--------------A---------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................AAGATTACGGAACCCGCTAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................TACGGAACCCGCTAACTGATA--------------AGT-------A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................TTACGGAACCCGCTAACTGATA--------------AGT-------A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................TTGAAACCAAGATTACGGAACCCGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................TTACGGAACCCGCTAACTGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................ACGGAACCCGCTAACTGATA--------------AG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............ATTGAAACCAAGATTACGGAACCCGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................GATTACGGAACCCGCTAACTGATA--------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........TCAAATTGAAACCAAGATTACGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......TTAA-TCAAATTGAAACCAAGATTACGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................ACCAAGATTACGGAACCCGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................AACCAAGATTACGGAACCCGCTAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................TAA-TCATAAACCGCAA-----------------------CGTA-AC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................ATAC------------------------------------------------------------------------------------------------------------------------------------------------TTTTTCCAAA----AAAA----C----ATTAC--------------------A......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................AACCCGCTAACTGATA--------------AGT-------ATGTTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................A---AAA----A-AG--A---------------------A----GGAAA-------GAAACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTT---AAACGTATTACA------------------------------------------------------------------T------ACATAAAC........................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................ACCAAGATTACGGAACCCGCTAACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................AA---AAA----A-AG--A---------------------A----GGAAA-------GAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................1950.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATATATATAT-------------------------------------A--------------------------------------------------TATATA......................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATATAT-------------------------------------A--------------------------------------------------TATATATA---------------------------------------------------------------------------------------------------------------------------------------G............................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATATATATAT-------------------------------------A--------------------------------------------------TATATAT.....................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATATATATAT-------------------------------------A--------------------------------------------------TATATAT.....................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACACCAGCATATATATTGC.........................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000
droEre2
GACGTATTAA-TCAAATTGAAACCAAGATTACGGATCCCGCT-ACTGATA--------------AGT-------ATGTTTAAACGTAA-TCATAAACCGCAA-----------------------CGTA-ACAG-AAATAC------------------------------------------------------------------------------------------------------------------------------------------------TTTTTCCAAA----AAA-----C----ATTAC--------------------AAA---AAA--------------------------------A----GAAAG-------AAAACCA--AAAAATCTTTTT---AAACGTATTACA------------------------------------------------------------------T------ACATA-ACTTTAAAAACT-----TATACATATATACACAGCAGCATATA---------------------------------TATATATAAAC----A--T------ATA-----TATAAA--------------TACG---GATATATAGAGACATTTAACATGACTAGTTTTGAA---ATCGTTTTAGGTCAT----------------------------------------------------------------------ACGAGTAATGACATCGAAGCATT-TTGTAAATACAACAGCAGACGG---------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAGTAATGACATCGAAGCATT-...............................2311.0011000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAA--------------TACG---GATATATAGAG.......................................................................................................................................................................2011.0010001000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAA--------------TACG---GATATATAGAGAC.....................................................................................................................................................................2211.0010000010
....................AACCAAGATTACGGATCCCGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001000
droYak3
GACGTATTAA-TCAAATTGAAACCAAGATTACGGAACCCGCTAACTGATA--------------AGT-------ATGTTTAAACGTAA-TCATAAACCGCAA-----------------------AGTA-ACAG-AAATAC------------------------------------------------------------------------------------------------------------------------------------------------TTTTTCCAAA----CAAAAAACC----ATTAC--------------------AAA---AAA--------------------------------A----GAAAG-------AAAACCA--AAAAATCTTTTT---AAACGTATTACA------------------------------------------------------------------T------ACATA-ACTTTAAATACT-----TATATAT----ACACAGCAGCATATA---------------------------------TATATATAAATAT--ATAT------ATA-----TATAAA--------------TACG---GATATATAGAGACATTTAACATGACTAGTTTTGAA---ATCGTTTTAGGTCAT----------------------------------------------------------------------ACGAGTAATGACATCGAAGCATT-TTGTAAATACAACAGCAGACGG---------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAA--------------TACG---GATATATAGAGACATT..................................................................................................................................................................2511.00100000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTTAACATGACTAGTTTTGAA---AT..........................................................................................................................................2711.00101000000000
....................................................................................GTAA-TCATAAACCGCAA-----------------------AGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000
..........................................AACTGATA--------------AGT-------ATGTTTAAACGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
.............................TACGGAACCCGCTAACTGATA--------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000
droEug1
GACGTATTAA-TCAAATTGCAACAAAGATTACGGAACCCGCTAACCGATA--------------AGT-------AAATTTAAACGTAA-TCATAAACCGCAA-----------------------CGTA-ACAG-AAATAC------------------------------------------------------------------------------------------------------------------------------------------------TTTTTCCAAC----AAA-----CAAAAATTACAAACCAAAAAAAAAAATCCCAAA---AAAAA----AA--A------------A-------TA----GAAAG-------AAAACCA--AAAAATCTTTTT---AAACGTATTGCA------------------------------------------------------------------T------ACATA-ACTTTATAAACT-----TATATATATATACACAA----ACAGG---------AT-----------------ATA--TACAT--------------------ATA-----TATATA--------------TTCG---GATATATAGAGACATTTAACTTGACTAGTTTTGAA---ATCGTTTTAGGTCAT----------------------------------------------------------------------ACGAGTAATGACATCGAAGCATT-TTGTAAATACAACAGCAGACGG---------SizeHit CountTotal NormTotal
No Reads
droBia1
GACGTATTAA-TCAAATTGCAACAAAGATTACGGAACCCGCTAACCGATA--------------AGTTAACTATAACTTTAAACGTAA-TCATAAACCGCTA-----------------------CGTA-ACAG-AAATAC------------------------------------------------------------------------------------------------------------------------------------------------TTTTTCCAAA----AAAA----------TAAC--------------------AAA---AAAA-----AGTGA---------------------A----GAAAC-------AAAACCA----AAATCTTTTT---AAACGTATTACA------------------------------------------------------------------T------ACATA-ACTTTATAAAAT-----TATAT------ACACACCAGCATATA---------------------------------T-------------------------------------G--------------TACG---GATATATAGAGACATTTAACTCGACTAGTTTTGAA---ATCGTTTTAGGTCAT----------------------------------------------------------------------ACGAGTAATGACATCGAAGCATT-TTGTAAATACAACAGCAGACGG---------SizeHit CountTotal NormTotal
No Reads
droTak1
GACGTATTAA-TCAAATGGCAACAAAGATTACGGAACCCGCTAACCGATA--------------AGT-------AAATTTAAACGTAA-TCATAAACCGCTA-----------------------CGTA-ACAG-AAATAC------------------------------------------------------------------------------------------------------------------------------------------------TTTTTCCAAA----AAA-----------TAAC--------------------AAA---AAA--------------------------------A----GAAAC-------AAAACA----AAAATCTTTTT---AAACGTATTACA------------------------------------------------------------------T------ACATA-ACTTTATAAAAT-----TATATAT----ACACACCAGCATATA---------------------------------TATATT------------G------ATA-----TATATA--------------TACG---GATATATAGAGACATTTAACTTGACTAGTTTTGAA---ATCGTTTTAGGTCAT----------------------------------------------------------------------ACGAGTAATGACATCGAAGCATT-TTGTAAATACAACAGCTGACGG---------SizeHit CountTotal NormTotal
No Reads
droEle1
GACGTATTAA-TCAAATTGCAACAAAGATTACGGAACCCGCTAAACGATA--------------AGT-------AAATTTAAACGTAA-TCAGAAACCGCAA-----------------------CGTA-ACAG-AAATAC------------------------------------------------------------------------------------------------------------------------------------------------TTTTTCCAAA----AAAA---------AAAAC--------------------A------------A-AA--A---------------------T----GAAAC-------AAAACAA--AAAAATCTTTTT---AAACGTATTACA------------------------------------------------------------------T------A-----AATTTATAAAAT-----TATATAT----ACAAACCAGCTTATA---------------------------------T---------------------------------ATATA--------------TACG---GATATATAGAGACATTTAACGTGACTAGTTTTGAA---ATCGTTTTAGGTCAT----------------------------------------------------------------------ACGAGTAATGACATCGAAGCATT-TTGTAAATACCACAGCAGACGG---------SizeHit CountTotal NormTotal
No Reads
droRho1
GACGTATTAA-TCAAATTGCAACAAAGATTACGGAACCGGCTAACCGATA--------------AGT-------TAATTTAAACGTAA-TCATAAACCGCAA-----------------------CGTA-ACAA-AAATAC------------------------------------------------------------------------------------------------------------------------------------------------TTTTTCCAAA----AAAA----------TAAC--------------------AAA---AAA-------------------------------------AACAT-------AAAACAA--AAAAATCTTTTT---AAACGTATTACA------------------------------------------------------------------T------A-----AATTTATAAAAT-----TATATAT----AAACACCAGCATATA---------------------------------TATATATAT--AT--ATAT------ATA-----TATATA--------------TCCG---GATATATAGAGACATTTAACTTGACTAGTTTTGAA---ATCGTTTTAGGTCAT----------------------------------------------------------------------ACGAGTAATGACATCGAAGCATT-TTGTAAATACCACAGCAGACGG---------SizeHit CountTotal NormTotal
No Reads
droFic1
GACGTATTAA-TCAAATTGCAACAAAGATTACGGAACCCGCTAACCGATA--------------AGT-------AAATTTAAACGTAA-TCATAAACCGCAA-----------------------CGTA-ACAG-AAATAC------------------------------------------------------------------------------------------------------------------------------------------------TTTTTCCAAA----AAAA----------TACC--------------------AAA---AAAAA----AC--A---------------------A----GCAAG-------AAAACAA--AAAAATCTTTTT---AAACGTATTACA------------------------------------------------------------------T------A-----AATTTATAAAAT-----TATATAT----ACACACCAGCATATA---------------------------------T-------------------------------------A--------------TACG---GATATATAGAGACATTTAACTTGACTAGTTTTGAA---ATCGTTTTAGGTCAT----------------------------------------------------------------------ACGAGTAATGACATCGAAGCATT-TTGTAAATACCACAGCAGACGG---------SizeHit CountTotal NormTotal
No Reads
droKik1
GACGTATTAA-TCAAATTGCGACAAAGATTACGGAACCCGCTAACCGATA--------------AGT-------AAACTTAA------------------------------------------------ACAG-AAATAC------------------------------------------------------------------------------------------------------------------------------------------------TTTTTCCAAA----CAA-----C----CG-------------------------AAAAACA----A-AG--A---------------------A----G---T-------GAAACCAAAAAAAATCTTTTT---AAACGTATTACA------------------------------------------------------------------T------A-----AATTTATAAACT-----TATATATATATACACACCAGCATATA---------------------------------TATATA--AAT-T--ATAC------AGA-----TATATA--------------TACAGAAGATATATAGAGACATTTAACTTGAATAGTTTTGAAGAAATCGTTTTAGGTCAT----------------------------------------------------------------------ACGAGTAATGACATCGAAGCATT-TTGTAAATACCACAGCAGACGGCAAAACACASizeHit CountTotal NormTotal
No Reads
droAna3
GACGTATTAA-TCAAATTGCAACAAAGATTACGGATCCCGCTAACCGTTA--------------AGT-------AACTTAAACAGT-------AAACCACA--------------------------------------AC------------------------------------------------------------------------------------------------------------------------------------------------TTTTTCCAAA----AAAA-----------AAC--------------------AAA---AGA----AAAATGCA--------------------A----AAAAG-------AAAACCA-ACAAAATCTTTTT---AAACGTATTACA------------------------------------------------------------------T------A-----AATTTATAAAAT-----TATAT------ACACACCAGCATATACATATATATAT-----------------------------AGAT----A--TATATATATATATATTATATA--------------TACG---GATATATAGAGACATTTAACTTGACTAGTTTTGAA---ATCGTTTTAGGTCAT----------------------------------------------------------------------ATGAGTAATGACATCGAAGCATT-TTGTAAATACCACAGCCGATGA---------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--------------TACG---GATATATAGAGACAT...................................................................................................................................................................2011.001001000
...............................................................................................................................................................................................................................................................................................TTTCCAAA----AAAA-----------AAC--------------------AAA---AGA----AA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
.....................................................................................................................................................................................................................................................................................................................................................................A--------------------A----AAAAG-------AAAACCA-ACAA.................................................................................................................................................................................................................................................................................................................................................................................................................................1820.501001000
....................................................................................................................................................................................................................................................................................................AAA----AAAA-----------AAC--------------------AAA---AGA----AAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051010000
droBip1
GACGTATTAA-TCAAATTGCAACAAAGATTACGGATCCCGCTAACCGTTA--------------AGT-------ACATTTAACAGTA-------AACCACA--------------------------------------AC------------------------------------------------------------------------------------------------------------------------------------------------TTTTTCCAAA----AAA----------------------------------------------------------------------------A----GAAACAAAAACAAAAACCA--AAAAATCTTTTT---AAACGTATTACA------------------------------------------------------------------T------A-----AATTTATAAAAT-----TATAT------ACACACCAGCATATA---------------------------------TATATA--------------------TATAAATTATATA--------------TACA---GATATATAGAGACATTTAACTTGACTAGTTTTGAA--AATCGTTTTAGGTCAT----------------------------------------------------------------------ATGAGTAATGACATCGAAGCATT-TTGTAAATACCACAGCCGATGA---------SizeHit CountTotal NormTotal
No Reads
dp5
GACGTATTAA-TCAAATTGCATCAGAGATAACGGAACC-GACAACAGTACAGTACGAATGCGAGAGT-------ACATT-CAACGTAAACCGTAAACCGTAAACCGTAAACCGTAAACCTTGAACCGTAAACAA-AAATAC------------------------------------------------------------------------------------------------------------------------------------------------TTTTTCCAGA----AAA-----------------------------------------------------------------------------------ACC-------AAAACCA--AATGAACTTTTT---AAACGTATTACA------------------------------------------------------------------T------A-----ACTTTATATTA-------ATATAT----ACATAC---------------------------------------------------------------------A-----TATATACACGCATATATA-GTACT---TATATACAAAACCATTTAACTTAATTAGTTTTGAA---AACGAT-TAGGTCATATATGCCTACATATGTCTGTATATATATAAATACTAGCCCTATTATTTATATGCATACATATGTACATATATGAGTGACGACATCGAAGCATTTTTGTAAATACCACAACAGACAG---------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................GATAACGGAACC-GACAACAGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.......................................GACAACAGTACAGTACGAATGCGAGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
....................................................................................GTAAACCGTAAACCGTAAACC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2170.1410100000000
..................................................................................................GTAAACCGTAAACCGTAAACC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2170.1410100000000
...........................................................................................GTAAACCGTAAACCGTAAACC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2170.1410100000000
droPer2
GACGTATTAA-TCAAATTGCATCAGAGATAACGGAACC-GACAACAGTACAGTACGAATGCGAGAGT-------ACATT-CAACGTAAACCGTAAACCGTAA-------ACCGTAAACCTTAAACCGTAAACAA-AAATAC------------------------------------------------------------------------------------------------------------------------------------------------TTTTTCCAGA----AAA-----------------------------------------------------------------------------------ACC-------AAAACCA--AATGAACTTTTT---AAACGTATTACA------------------------------------------------------------------T------A-----ACTTTATATTAA-----TATATA-----------------------------------------------------------------------T------ATA-----TATATACACGCATATATA-GTACT---TATATACAAAACCATTTAACTTAATTAGTTTTGAA---AACGAT-TAGGTCATATATGCCTACATATGTCTGTATATATATAAATACTAGCCCTATTATTTATATGCATACATATGTACATATATGAGTGACGACATCGAAGCATTTTTGTAAATACCACAACAGACAG---------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
........AA-TCAAATTGCATCAGAGATAACGGAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
droWil2
GATGTATTAA-TCAAATTGAAT--------------------------------------------------------------------------------------------------------GAA-ACA-----------------------------------------------------------------AACAAAAAAAAAAGGAAGAAAAAAAACAAACAAACCA--TACAAAACAAAACAAAACAAGAAACAAAGAAAGGAAAATATGCAAAACTTTTTCCAACCAAAAAA-----------------------------------------------------------------------------------ACC-------GAAAACA--AAACATTTTTAA---AAACGTATTACA------------------------------------------------------------------T------A-----CATTTATA---TTAACGTATATAT----ACAC----GCACATA---------------------------------TATATG------------------------------------------------------TATATATA----TATTTAACTTAATTAGTTTTGAA---AACGTTTTAGGTCATAC------------------------------------------------------------------ATATGAGTAACGACATCGAAGCATT-TTGTAAATACAACAACAGA------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTAGGTCATAC------------------------------------------------------------------ATATGAGTAAC..............................................2511.00100010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAA---AACGTTTTAGGTC...............................................................................................................................1911.00100010
.....................................................................................................................................................................................................................................................................CAAAGAAAGGAAAATATGCAAAACTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGTTTTAGGTCATAC------------------------------------------------------------------ATATGAGT.................................................2511.00100010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGACATCGAAGCATT-TTGT...........................2111.00100010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAGGTCATAC------------------------------------------------------------------ATATGAGT.................................................2011.00100100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGACATCGAAGCATT-TTGTA..........................2211.00100010
...........................................................................................................................................................................................................AAAAAAAAGGAAGAAAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05101000
droVir3
TATATACTAAATTAAATTTAAATTAAAATTAAAATTAAAACTAAA---------------------T-------AAAATTAA------------------------------------------------ATAATAATTGTAATCATTATTCTTCCACTTCAAACGTTTGAAATGTGTAATTTTTTAATTCAATAACAAATAACAAAAAAAAAAAATACAAAACTAAACAAATTAATTA-----GACAACAAATTTAGAAGCAACA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACAAC---TAAACATA-----CATATATATACA-----TATAT------ACATAG------------------------------TGCATAGATAAATATATATAAAT----A--T------ATA-----TATATA------------TATATA---TATATATATATATATTC------------------------------------------------------------------------------------------------------------------------------------------------------GA---------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................................................................................................................................................TTCTTCCACTTCAAACGTTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000001000
..................TAAATTAAAATTAAAATTAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2170.141000000000000000000000000000001000000000000000000000000000000000
droMoj3
GACGTATTAA-TCAAATTGAAACCAAAACAA----------------------------------------------------------------A---CAA---------------C-------TTTA-ACGC-AAATAC---------------------------------------TTT-----TCCAA-----------------------------------------A--AACAA----------------------------------------------------------AA-----C----AAAAC--------------------AAA---ACA----AAAATGCGAAAACCAAAGAA--------A----ACAAG-------AAAATAA--GCAAACATTTTTAAAAAACGTATTATACTTAACATTTATACTTGTAACTTAATTAGTCTTGAAAAACATTTTAGATCATATAAAAACAAATCAC------A-----AATATATATATT-----TATATATATATATATAT----ATATA---------------------------------TATATATAT--ATATA--T------ATA-----TATATA--------------TATA---TATATATATATATA------------------------------------TAT----------------------------------------------------------------------ATGACTAGCAACATCGAAGCATT-CTGTAAATAAAAAAAAATACAA---------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTTTAGATCATATAAAAACAAAT.........................................................................................................................................................................................................................................................................................................................................2511.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTAGCAACATCGAAGCATT-CTGT...........................2511.001000100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGACTAGCAACATCGAAGC...................................2011.001100000
droGri2
AACATACTTATATATATTAAAAACAT------------------------------------------------------AAACATAA-ATATAAACATATG--------------------AATAATA-ACAAAAAATACTACTAC--------------------------------ATACTTATATACGGATATAA-----------------------------------------------------------------------------------------------------------------ACCATAAATACA--TAAAATACTTTAAA---AAAAA----AT--A------------ACCGTTTACAGCAAGAAAA-------TTAATTA--TGGAATCTTA---------------------ATGTTGATATCAATGTACTTAGTGATTGAATGTG-----------------------------------ACATG-CTTCGAAA---------TACATAT----ATACATATACATATATGTATATA-------------------------TATATA--------------------TACATACTACAGA----------TATATATA---TATATATAT--------------------------------------------------------------------------------------------------------------------ACACACCTACATAAAAATAGT-ATTTACATACA--------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 01:48 AM