ID:

dsi_13423

 Coordinate:

3l:7781000-7781198 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

CDS [3l_7780926_7780999_+]; exon [3l_7780850_7780999_+]; CDS [3l_7781199_7782102_+]; exon [3l_7781199_7782732_+]; intron [3l_7781000_7781198_+]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GTGGCCATTTTGGCCTGTTTTCTGGTGACTATCAAATCCACGCCCCTCAGGTGAGTGCAAACAGTGCAAACTAAAATTCTATTGGAATCATTTCTGGATTTTTGCCAACCAACAAACTTTATATTTCGGTAATCCGGGATATATATTCAAGTTCAAGGTTGACCCAGTAATCCACTTTTTGCCTAACAATAAACAAAGGCAGCGTCCAAATGAACCGAATTACTCATGGTTTCATATTACCCATTGCAGCGACATATCGGATTCGGATGAATCGACTTCGGTGGATGAGAAGACACAGA
**************************************************(((((((((.....))))........(((..(((((........((((((.(((.(((((....(((((((((((((((....)))))))))).....)))))...)))))...))).))))))....((((((............))))))..)))))..)))........)))))(((........)))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR553488
RT_0-2 hours eggs
 M025
embryo
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
......................................................................................................................................................................................................................................................CAGCGACATATCGGATTCGGA................................ 21 0 1 1.00 1 0 1 0 0 0 0 0
.....................................................................................................................................................................................................................................................TCAGCGACATATCGGATT.................................... 18 1 1 1.00 1 0 0 0 1 0 0 0
.....................................................................................................................................................................................................................................................................TTCGGATGAATCGACTTCGGTGGATG............ 26 0 1 1.00 1 0 0 0 0 1 0 0
.......................................................................................................................................................................................................................................................................CGGATGAATCGACTTCGGTGG............... 21 0 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................GACATATCGGATTCGGATGAATCGAC....................... 26 0 1 1.00 1 0 0 1 0 0 0 0
..........................................................................................................................................................................................................................................................GACATATCGGATTCGGATGAATC.......................... 23 0 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................................................................................................TGCCTAACTATAAACAAAGCGA.................................................................................................. 22 3 4 0.25 1 0 0 0 0 0 1 0
................................................................................................................................................................................................................................................................................CGACTTCGGTAGATGCGA......... 18 2 4 0.25 1 0 0 0 0 0 0 1
....................................................................................................................................................AAGTTCAAGGTTACCCCAGGA.................................................................................................................................. 21 3 6 0.17 1 0 1 0 0 0 0 0
................................................................................................................................................................................................................AATGAAGCGAATTACT........................................................................... 16 1 7 0.14 1 0 0 0 0 0 1 0
................GTTTTCTGGTGAGTA............................................................................................................................................................................................................................................................................ 15 1 15 0.07 1 0 0 0 0 0 1 0
................................CAAATCCACCCCCCGCA.......................................................................................................................................................................................................................................................... 17 2 18 0.06 1 0 1 0 0 0 0 0

Anti-sense strand reads

CACCGGTAAAACCGGACAAAAGACCACTGATAGTTTAGGTGCGGGGAGTCCACTCACGTTTGTCACGTTTGATTTTAAGATAACCTTAGTAAAGACCTAAAAACGGTTGGTTGTTTGAAATATAAAGCCATTAGGCCCTATATATAAGTTCAAGTTCCAACTGGGTCATTAGGTGAAAAACGGATTGTTATTTGTTTCCGTCGCAGGTTTACTTGGCTTAATGAGTACCAAAGTATAATGGGTAACGTCGCTGTATAGCCTAAGCCTACTTAGCTGAAGCCACCTACTCTTCTGTGTCT
**************************************************(((((((((.....))))........(((..(((((........((((((.(((.(((((....(((((((((((((((....)))))))))).....)))))...)))))...))).))))))....((((((............))))))..)))))..)))........)))))(((........)))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 M023
head
 M024
male body
............................GATAGTTTAGGTGCGGGGAG........................................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0
.................AAAAGGCCACTGATA........................................................................................................................................................................................................................................................................... 15 1 14 0.07 1 1 0 0 0 0
............................................................................................................................................................................GTGACAAACAGATTGATATT........................................................................................................... 20 3 18 0.06 1 0 0 1 0 0
.....................................................................................................................................................TCAGGTTCCCACTGGGTCTT.................................................................................................................................. 20 3 20 0.05 1 0 0 0 1 0
...............................................................................................................................................................................AAAAACGGATTGATATAT.......................................................................................................... 18 2 20 0.05 1 0 1 0 0 0
...................................................................................................................................................................GATCATTAGCTGAAAATCG..................................................................................................................... 19 3 20 0.05 1 0 0 0 0 1
..........................................................................................................................................................................................................................................................CTGTATAGCCCAAGCT................................. 16 2 20 0.05 1 0 1 0 0 0

Generated: 04/24/2015 at 10:29 AM