ID:

dsi_13406

 Coordinate:

3l:21026548-21026697 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [3l_21026698_21027245_+]; five_prime_UTR [3l_21026698_21027036_+]; intron [3l_21026113_21026697_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TAGTTCTAAAGAACAAACCCAAATAAAAAATGTTTGTTATTTTTCCGCAAACACCTACAGTGTGACCAGCGCCTTTGGTCGGTTAAATGACAGCAACACGCGTTCTTCCTCCATTCTCCCCATACCATTTTCGGTCACACTTGCCACTTCATTATAACCTTAAAATGACAAGTTATAAATTTTTTTTATGTTAATTTTAGTGGAAACCGAACACTAGATTGACTTTTAAAAGCTGTGCCGCAGTGTGCCG
**************************************************........((((((((((((((..(((((((......))))..)))...)))))............................)))))))))..........(((((((.............)))))))......................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M023
head
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 GSM343915
embryo
...................................................................................................................................................................................................TTTAGTGGAAACCGAACA..................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0
.........................................................CAGTGTGACCGGCGCCTTTGG............................................................................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................ATTGACTTTTAAAAGCTG............... 18 0 1 1.00 1 0 0 0 1 0 0 0 0
...............................................................................................................................................................................................................................TTGTAAAAGATGAGCCGCAGT...... 21 3 1 1.00 1 0 0 0 0 1 0 0 0
......................................................................................................................................................................................................TGTGGAAACCGAACACTAGATTGACTTT........................ 28 1 1 1.00 1 0 0 0 0 0 1 0 0
.....................................................................................................................................................................................................TAGTGGAAACCGAACACTAGA................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................TGTGGAAACCGATCACTAGATTGACTTT........................ 28 2 1 1.00 1 0 1 0 0 0 0 0 0
..................................................................................................................TCTTCCCATACCATTTTCGG.................................................................................................................... 20 1 1 1.00 1 0 0 1 0 0 0 0 0
................................TTTGTTATATAACCGCAAACA..................................................................................................................................................................................................... 21 3 5 0.20 1 0 0 0 0 0 0 1 0
................................................................................................................................................................................................................................TGTAAAAGATGAGCCGCAGT...... 20 3 5 0.20 1 0 0 0 0 0 0 1 0
...................................................................AGTGCCTTTGGTCGTTTACA................................................................................................................................................................... 20 3 5 0.20 1 0 0 0 0 0 0 0 1
................................................................................................................................................................................................................GAAGACTAGCTTGAATTTTAA..................... 21 3 7 0.14 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................TACATCTTTTTTATCTTAATTTT.................................................... 23 3 8 0.13 1 0 0 1 0 0 0 0 0
................................................................................................................................................................................................................................TTTAAAAGCTGTGCA........... 15 1 20 0.05 1 0 0 1 0 0 0 0 0

Anti-sense strand reads

ATCAAGATTTCTTGTTTGGGTTTATTTTTTACAAACAATAAAAAGGCGTTTGTGGATGTCACACTGGTCGCGGAAACCAGCCAATTTACTGTCGTTGTGCGCAAGAAGGAGGTAAGAGGGGTATGGTAAAAGCCAGTGTGAACGGTGAAGTAATATTGGAATTTTACTGTTCAATATTTAAAAAAAATACAATTAAAATCACCTTTGGCTTGTGATCTAACTGAAAATTTTCGACACGGCGTCACACGGC
**************************************************........((((((((((((((..(((((((......))))..)))...)))))............................)))))))))..........(((((((.............)))))))......................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 O001
Testis
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 M023
head
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
..................................................................................................................AGAAGGGTATGGTAAAAGC..................................................................................................................... 19 1 1 7.00 7 7 0 0 0 0 0 0 0 0 0
..........................................AAGGCGTTTGTGGATGTCACA........................................................................................................................................................................................... 21 0 1 6.00 6 0 6 0 0 0 0 0 0 0 0
..................................................................................................................AGAAGGGTATGGTAAAAGCCAAGG................................................................................................................ 24 3 1 6.00 6 6 0 0 0 0 0 0 0 0 0
..................................................................................................................AGAAGGGTATGGTAAAAGCCAA.................................................................................................................. 22 2 1 3.00 3 3 0 0 0 0 0 0 0 0 0
..................................................................................................................AGAAGGGTATGGTAAAAGCCAAG................................................................................................................. 23 3 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.......................................................................................................................GGTATGGTAAAAGCC.................................................................................................................... 15 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
..................................................................................................................AGAAGGGTATGGTAAA........................................................................................................................ 16 1 8 1.50 12 10 0 0 0 2 0 0 0 0 0
..................................................................................................................AGAAGGGTATGGTAAAA....................................................................................................................... 17 1 5 1.40 7 7 0 0 0 0 0 0 0 0 0
..................................................................................................................AGAAGGGTATGGTAAAAG...................................................................................................................... 18 1 3 1.33 4 4 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................AAAATTGTCTACACGGCG......... 18 2 9 1.22 11 0 0 5 0 2 2 0 2 0 0
..................................................................................................................AGAAGGGTATGGTAAAAGCCAATGT............................................................................................................... 25 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......TTTCTTGTTTGGGTTTATTTT.............................................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................GGGGTATGGTAAAAGCCAGTG................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..........................................TAGGCGTTTGTGGATGTCACA........................................................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
................................................................................................................AGAGAAGGGTATGGTAAAAGCCA................................................................................................................... 23 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................TGTGAACGGTGAAGTAATATT............................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.........TCTTGTTTGGGTTTATTTTTT............................................................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................TGTGCGCAAGAAGGAGGTGA....................................................................................................................................... 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.TCAAGGTTTCTTGTTTGGGTT.................................................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0
..............................................................TATGGTCGCGGAAACCAGCCAATT.................................................................................................................................................................... 24 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.........TCTTGTTTGGGTTTATTTTT............................................................................................................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
........................................TTTAGGCGTTTGTGGATGTCAC............................................................................................................................................................................................ 22 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..........................................AAGGCGTTTGTGGATGTCACG........................................................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................TGTGCGCAAGAAGGAGGTA........................................................................................................................................ 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................GGTTTATTTTTTACAAACAATA.................................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...................................................GTGGATGTCACACTGGTC..................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
.........................................................................................TGTCGTTGTGCGCAAGAAGGA............................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..........................................AAGGCGTTTGTGGGTGTCACA........................................................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.................................................................................................TGCGCAAGAAGGAGGTAAGAG.................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
........................................................................................................TAAGGAGGTAAGAGGGGTAT.............................................................................................................................. 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................AGAAGGGTATGGTAAAAGCCA................................................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................ACCTTTGGCTTGTGATCTAA.............................. 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.......................................................................................................AGAAGGAGGTAAGAGGGGTA............................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
......................................................................................TTCTGTCGTTGTGCGCAAGA................................................................................................................................................ 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................GAAAATTGTCTACACGGC.......... 18 2 7 0.71 5 0 0 1 0 3 0 0 1 0 0
.....................................................................................................................AGGGTATGGTAAAAGC..................................................................................................................... 16 1 10 0.70 7 7 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................GAAAATTGTCTACACGGCG......... 19 2 3 0.67 2 0 0 1 0 1 0 0 0 0 0
.....................................................................................................................AGGGTATGGTAAAAGCCAA.................................................................................................................. 19 2 4 0.50 2 1 0 0 0 0 0 0 1 0 0
.................................................................................................................GAGAAGGGTATGGTAAAAGC..................................................................................................................... 20 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................AGGGTATGGTAAAAGCCAAGG................................................................................................................ 21 3 10 0.50 5 5 0 0 0 0 0 0 0 0 0
...............................................................................................................GTAAGATGCGTATGGTAA......................................................................................................................... 18 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................................AAATTGTCTACACGGCG......... 17 2 18 0.39 7 1 0 2 0 3 0 0 1 0 0
.....................................................................................................................AGGGTATGGTAAAAGCC.................................................................................................................... 17 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................AAGGGTATGGTAAAAGC..................................................................................................................... 17 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................AAATTTTCTACACGGC.......... 16 1 4 0.25 1 0 0 1 0 0 0 0 0 0 0
................................................................................................................AGAGAAGGGTATGGTAAAAGC..................................................................................................................... 21 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................AAAATTGTCTACACGGCGT........ 19 2 5 0.20 1 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................AGGGTATGGTAAAAGCCAAG................................................................................................................. 20 3 20 0.15 3 3 0 0 0 0 0 0 0 0 0
..............................................................................................TGGTCCGCAAGAAGGAG........................................................................................................................................... 17 2 16 0.13 2 0 0 2 0 0 0 0 0 0 0
..................................................................................................................AGAAGGGTAAGGTAAAAGCCAA.................................................................................................................. 22 3 9 0.11 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................TGGTGGTCCGCAAGAAGGAG........................................................................................................................................... 20 3 9 0.11 1 0 0 0 0 1 0 0 0 0 0
..................................................................................................................AGAAGGGTATGGTAA......................................................................................................................... 15 1 10 0.10 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................CTCAAGAAGGAGCTATGAG.................................................................................................................................... 19 3 11 0.09 1 0 0 0 0 0 1 0 0 0 0
............................................................................................................CAGGTAAGAAGGGTATG............................................................................................................................. 17 2 11 0.09 1 0 0 0 0 1 0 0 0 0 0
...............................................................................................................GTAAGATGCGTATGGTAACA....................................................................................................................... 20 3 11 0.09 1 0 0 0 1 0 0 0 0 0 0
..........................................................................................GTCGTTGTGCTCAACAAGGG............................................................................................................................................ 20 3 13 0.08 1 0 0 0 0 0 0 0 0 1 0
...AAGATGTCTTGTGTGGG...................................................................................................................................................................................................................................... 17 2 18 0.06 1 0 0 0 0 0 0 0 0 0 1
................................................................................................................................................................................................................................AAAATTTCTACACGGCG......... 17 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:21026498-21026747 + dsi_13406 TAGT--------------------------------------------TCTAAAGAACAAACCCAAAT-----AA-AAAATG-TTTGTTATTT---------------------T---TCCGCAAACACCTACAGTGTGACCAG-CGCCTTTGGTCGG-TTAAATGA-------------CAG--------CAACACGCGTTCTTCCTCCATTCTCC--------------------------------------------------------------CC-ATACCATTTTCGGTCACACTTGCCACTTCATTATAACCTTAAAA------TGACAAGTTATAAATTTTT-TTTATGTTAATTTTAGTGGAAAC------CGAACACT-AGATTGACTTTTAAA--AGCTGTGCCGCAGTGT---GCCG--
droSec2 scaffold_11:1429840-1430089 + TAGT--------------------------------------------TCTAAAGAACAAACCCAAAT-----AA-AAAATG-TTTGTTATTT---------------------T---TCCGCAAACACCTACAGTGTGACCAG-CGCCTTTGGTCGG-TTAAATGA-------------CAG--------CAACACGCGTTCTTCCGCCATTCTCC--------------------------------------------------------------CC-ATACCATTTTCGGTCACACTTGCCACTTCATTATAACCTTAAAA------TGACAAGTTATAAATTTTT-TTTATGTTAATTTTAGTGGAAAC------CGAACACT-AGATTGACTTTTAAA--AGCTGTGCCGCAGTGC---GCAG--
dm3 chr3L:21510150-21510399 + TAGT--------------------------------------------TTTAAAGAACAAACCAAAAT-----AAAAAAAAG-TTTGTTATTT-------------------------TCCGCAAACACCTACAGTGTGACCAG-CGTCTTTGGTCGG-TTAAATGA-------------CAG--------TAACACGCGTTCTTCCGCCTTTTGCC--------------------------------------------------------------CC-ATACCATTTTCGGTCACACTTGCCACTTCATTATAACCTTAAAA------TGACAAGTTATAAATTTTT-TTTATGTTAATTTTAGTGGAAAC------CGAACACT-AGATTGACTTTTAAA--AGCTGTGCCGCAGTGT---GCCG--
droEre2 scaffold_4784:21163375-21163629 + TAGT--------------------------------------------TTTAATGA----ACCTAAAT-----AA-AAAATG-ATTGTTATTT---------------------T---TCCTTAAACACCTTCAGTGTGCCCAG-CGCCATAGATTGG-TTAAATGT-------------CAG--------CAACACGCGTTCTTCCTCTGATGGCG------------AAAAT--AAC----------------------------------------AC-ATACCATTTTCGGTCACACTTGCCACTTCATTATAACCTTAAAA------TGACAAGTTGTAAATTTTTTTTTATGTTAATTTTAGTGGAAAC------CGAACACT-AGATTGACTTTCCAA--AGCTGTGCCGCAGAGT---GTCG--
droYak3 3L:19019833-19020083 - AAGT--------------------------------------------CTTAATGAACAAACCTAATT-----AA-AAAATT-GTTGTTATTT---------------------T---TCTGTAAG------CAGTGTGCCCAG-AGCCATAGATTGG-TTAAATGA-------------CAG--------CAACACGCGTTTTTCCGCTGATGGCT------------AA-ATG--CC----------------------------------------CT-ATACCATTCTCGGTCACACTTGCCACTTCATTATAACCTTAAAA------TGACAAGTTATAAATTTTT-TTTATGTTAATTTTAGTGGAACC------CGAACACT-AGATTGACTTTCCAA--AGCTGTGCCGCAAAGT---GCCG--
droEug1 scf7180000409472:329233-329476 + TAAG--------------------------------------------GATA-----TA--------A-----AC-CAAATT-ATTGTTCTTT---------------------C---TCCGAAACTGTCTGTAGACCAAGATG-CGATATTAATCGC-TAAAATGT-------------CAGTGGCAC--CTACACGCGTTCTTTCGCTATTCGCC---------------------C----------------------------------------AC-TTATTGTGTTTGGTCACACTCGTCACTTCATTATAACCTTAAAA------TGACAAGTTATAATTTTTT-TTAATGTTAATTTTAGTGGAAAC------CGAAAGCC-AAACCGACTTTGAAA--TACTGTGCAGTGAAGT---GCCG--
droBia1 scf7180000302377:1818739-1818991 - TAGTTAAAGTC--------------------------------------AT--------AATT-AAAGA----AAGAAAATA-ATTATTATTT---------------------C---TCCGGAAT--AATATAGTGTGACCTG-CGATATTCATCCC-TAAAATAG-------------CAGTGTCACT-CAACACGCGTTCTGCAGTTATTAACC---------------------------------------------------------------A-AGGCGATTCTTGGTCACACTCGCCACTTCATTATAACCTTAAAA------TGACAAGTTATAAATTTTT-TTTATGTTAATTTTAGTGGAAAC------CCTACACT-AAATCGACTTTTAAA--AGCAGTGCCGTGAAGC---TCCA--
droTak1 scf7180000415388:180050-180289 + TTGT--------------------------------------------TTAAAAA--AA-ATCCAAAT-----A---------T---TTATTT---------------------------TGCGAATATCTTTAGTGTGACCTCCCGACATTCATCCG-CGAAATAT-------------CAGTGGCAAC-CGACACGCGTTCTTCCGCTTTTCACC--------------------------------------------------------------AA-ATATGTCGTTTGGCCACACTCGCCACTTCATTATAACCT-AAAA------TGACAAGTTGTAA-TTTTT-TTTATGTTAATTTTAGTGGAAAC------CGAACACT-AGATCGTTTTTTAAG--ACCATTGCCGTGAAGT---GCCG--
droEle1 scf7180000491255:2778118-2778365 - TTTA--------------------------------------------TTTAAAG--------TAAAT-----AC-GAAATA-TTTGTTATTT---------------------A---TTGAAGAATAACTCTAGTGTGACCTG-CGATAGTATTCGC-TTAAATAT-------------CCGTGGCAA--CGACACGCACTCTTTCGCTATTCACC--------------------------------------------------------------TC-ATGCGCGGTTTGGCCACACTCGGCACTTCATTATAACCTTAAAA------TGACAAGTTATAAATTTTT-TTTATATTAATTTCAGTGGTAAC------CGAACACT-AAATCCACTTTCAAG--AGAAGTGCAGTGCAGT---GCCG--
droRho1 scf7180000779324:46731-47024 - TAGTTAA-GTCTTTGTTATTACCTTAAATATGATTCGATTTTAGTTTATTT-------AAATGTAAGT-----AA-AAAATA-TTTTTTATAT---------------------CTT-CTGCCGAATTTCTATAGTGTGACCTG-CGATAATCATCCC-TAAAATAT-------------CCGTGGCAA--CAACACGCGTTCTTCCGCTAATCACC--------------------------------------------------------------TC-ATTCGCTGTTTGGCCACACTCGGCACTTCATTATAACCTTAAAA------TGACAAGTTATAAATTTTT-TTTATATTAATTTCAGTGGAAAC------CGAACACT-AAATCCACTTTAAAG--AGAAGTGCAGTGAAGT---GCCG--
droFic1 scf7180000453831:337056-337299 + CC-------------------------------------------------AAAG-------T-GAATA----CA-AAAATGTGTTTTTGTTT--------------------------TGCCAAATCTCTTTAGTGTGACCTC-CGATATTCATCAC-CAAAACGT-------------CAGTGGCAAT-CAATACGCGTTCTTCCGCTATTCACC--------------------------------------------------------------AC-ACTCGATGATTGGGCACACTTGTCACTTCATTATAACCTTAAAA------TGACAAGTTATAAATTTTT-TTTATGTTAATTTTAGTGGAAAC------CGAACACT-AAATCGTTTTTTAGG--AGCAGTGCAGTGAAGT---GTCG--
droKik1 scf7180000302694:368106-368392 + TAGT--------------------------------------------GTTTATATATATATCCT---------------------TTTATTTTGTATAAAATAAATTTCGTATTATCTC--CGACAATCTTTAGACTGACCAG-AGTTGTTTGTGGTCTATAATAT-------------CTGTTGCAGGAGAACACGCATTCTCTTGCATTTCACCCTACTGAAGGATTA-ATTTTTC--------------------------------------------TAAGTTTCTTGGTCACACTTGCCACTTCATTATAACCTTAAAA------TGACAAGTTATAAATTTTG-TTAATGTTAATTTTAGTGGGAAC------CGAACCTT-AAATCGACTATTAAACTAGACGTGCAGCAAAGT---GCCG--
droAna3 scaffold_13337:17122557-17122680 - A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGATATCTGGTCACACTT--CAACACATTATAACCTTAAAA------TGACAAGTTATAA-TTTTT-TGTATGTTAATTTTAGTGGGAAG-------AAACATT-AATTTGACCATTAAACCTCCCGTGCCCTGAA-A---GCCG--
droBip1 scf7180000396641:611056-611282 - CATTTATAATT---------------------------------CTTATTT-AAAAACAATCTAAAAG-CC---------------------------------------------------------GCCATGGAATAATCTT-AGATATTCATCGCATAACATATTGTTTTGGACACACCGTAGAAAGCGAAGACGGG-----------------------------------------------------------------------------------------CTCTGGTCACACTTTC-AACACATTATAACCTTAAAA------TGACAAGTTATAA-TTTTT-TGTATGTTAATTTTAGTGAAAA-------GAAACATT-AATTTGACCATTAAACCACCCGTGAACTGAA-A---GCTG--
dp5 XR_group6:13046185-13046421 - GTGA--------------------------------------------TTCAAAATTCA--------T-----AT-GAAATT-ATTTTTTTTG-----------------------------TGA---------CGATGTCCAA-CATTATTTATCGC-TGAAATAT-------------TTC--------TA------------TCGTTATTTTTCTTGTAGACGATTTA-ATTTTTC----------------------------------------AT-ATTCAATGTTTGGTCACACTCGGCCATTCTTTATAACCTTAAAA------TGACAAGTGATTATTTTC----GATTTTATATTTAGGGGAC-TCGGACTCGAAGCTTTAGA-TGTCCGCAAAG--ATCAATGCAG---AGTGGCAC----
droPer2 scaffold_88:74238-74486 - TATA--------------------------------------------TTCAAAG--TGATTCAAAAT-TCATAT-GAAATT-ATTTTTTTTG-----------------------------TGA---------CGATGTCCAA-CATTATTTATCGC-TGAAATAT-------------TTC--------TA------------TCGTTATTTTTTTTGTAGACGATTTA-ATTTTTC----------------------------------------AT-ATTCAATGTTTGGTCACACTCGGCCATTCTTTATAACCTTAAAA------TGACAAGTGATTATTTTC----GATTTTATATTTAGGGGAC-TCGGACTCGAAGCTTTAGA-TGTCCGCAAAG--ATCAATGCAGAGTGGC---ACTG--
droWil2 scf2_1100000004540:1151633-1151752 + -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCCACACTCGACAG----TTATAACCTTAAAAACGATAAGACAAGTGACAAATTTCT-TT-----TTATTTTCGTGACAAAAAAAAAAGTAAAATCAAT-TGTAAC---TA--AACAGTACCGCAAATT---GCCGTG
droVir3 scaffold_13049:13673907-13674069 - TGTTAAAAAT--------------------------------------TGTAAAGAGTAGTGC-------------GAAGTT-TTTAATT-------------------------------------------------------------------------------------------------------------------------------------------TA-ATGTTTTAAAGAGTTTGCGTTTTGGTAAAAATCTGCAAGCATTTTGTGCGTAACTATGTCTGGTCACACATAACA------TATAACCTAAAAAA-----TGACAAGTGACAAATTTCT-TTTTTGTTCATTTTA-----------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TAGT--------------------------------------------TCTAAAGAACAAACCCAAAT-----AA-AAAATG-TTTGTTATTT---------------------T---TCCGCAAACACCTACAGTGTGACCAG-CGCCTTTGGTCGG-TTAAATGA-------------CAG--------CAACACGCGTTCTTCCTCCATTCTCC--------------------------------------------------------------CC-ATACCATTTTCGGTCACACTTGCCACTTCATTATAACCTTAAAA------TGACAAGTTATAAATTTTT-TTTATGTTAATTTTAGTGGAAAC------CGAACACT-AGATTGACTTTTAAA--AGCTGTGCCGCAGTGT---GCCG--SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................................................................................................................................................................................................................................................TTTAGTGGAAAC------CGAACA.............................................1811.00100000000010000000
........................................................................................................................................................................................................................................................................................................................................................................................................ATTGACTTTTAAA--AGCTG....................1811.00110000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................TAGTGGAAAC------CGAACACT-AGA.......................................2111.00100000000000001000
...............................................................................................................................................................................................................................................................................................................................................................................................................TTTAAA--AGCTGTGCA................15200.05100000000100000000
droSec2
TAGT--------------------------------------------TCTAAAGAACAAACCCAAAT-----AA-AAAATG-TTTGTTATTT---------------------T---TCCGCAAACACCTACAGTGTGACCAG-CGCCTTTGGTCGG-TTAAATGA-------------CAG--------CAACACGCGTTCTTCCGCCATTCTCC--------------------------------------------------------------CC-ATACCATTTTCGGTCACACTTGCCACTTCATTATAACCTTAAAA------TGACAAGTTATAAATTTTT-TTTATGTTAATTTTAGTGGAAAC------CGAACACT-AGATTGACTTTTAAA--AGCTGTGCCGCAGTGC---GCAG--SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........................................................................................................................................................................................................................................................................................................................................................................................................ATTGACTTTTAAA--AGCTGTGCCG...............2311.0010001
dm3
TAGT--------------------------------------------TTTAAAGAACAAACCAAAAT-----AAAAAAAAG-TTTGTTATTT-------------------------TCCGCAAACACCTACAGTGTGACCAG-CGTCTTTGGTCGG-TTAAATGA-------------CAG--------TAACACGCGTTCTTCCGCCTTTTGCC--------------------------------------------------------------CC-ATACCATTTTCGGTCACACTTGCCACTTCATTATAACCTTAAAA------TGACAAGTTATAAATTTTT-TTTATGTTAATTTTAGTGGAAAC------CGAACACT-AGATTGACTTTTAAA--AGCTGTGCCGCAGTGT---GCCG--SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................................................................................................................................CTACAGTGTGACCAG-CGTCTT.........................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000
..................................................................................................................................................................................................................................................................................................TTCGGTCACACTTGCCACTTCATTATA...................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................AGATTGACTTTTAAA--AGCTGT...................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000010000000000000000000000000000000000
.....................................................................................................................................................TTTGGTCGG-TTAAATGA-------------CAG--------TAACAC...........................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................ACCTACAGTGTGACCAG-CGTCT..........................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
...................................................................................................................................ACAGTGTGACCAG-CGTCTT.........................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................CT-AGATTGACTTTTAAA--AGCTGT...................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................AAATTTTT-TTTATGTTAATTTTAGT...............................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................AC------CGAACACT-AGATTGAC..................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................CACT-AGATTGACTTTTAAA--AGCTGT...................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...............................................................................................................................ACCTACAGTGTGACCAG-CGTCTTTGG......................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................CTTTTAAA--AGCTGTGCCG...............1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................AC------CGAACACT-AGATTGACTT................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.......................................................................................................................................................................................................................................................................................................................ATTATAACCTTAAAA------TGACA...............................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................AAA--AGCTGTGCCGCAGTG..........1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................ATAACCTTAAAA------TGACAA..............................................................................................1811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................AAAAAAG-TTTGTTATTT-------------------------TCCGCAAACACC..............................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................TTTGTTATTT-------------------------TCCGCAAACACCTAC...........................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................CCTACAGTGTGACCAG-CGTC...........................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................AAC------CGAACACT-AGATTGACTTTTA.............................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................CCACTTCATTATAACCTTAAAA------TGAC................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................TTTT-TTTATGTTAATTTTAGTGGAAAC------C..................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................ATTATAACCTTAAAA------TGACAAGT............................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................AATTTTAGTGGAAAC------CGAACA.............................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................ACACT-AGATTGACTTTTAAA--AGCTGT...................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
........................................................................................................................................................................................................................................................................................................CACACTTGCCACTTCATTATAACCT...............................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................TAAATGA-------------CAG--------TAACACGCGTTCTTCCGCC..............................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................TACAGTGTGACCAG-CGTCTTTGGTCGG-T................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
................................................................................................................................................................TAAATGA-------------CAG--------TAACACGCGTTCTTCC.................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................AACCTTAAAA------TGACAAGT............................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................TTT-TTTATGTTAATTTTAGTGGAAAC------C..................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................ACTTCATTATAACCTTAAAA------TGACAAG.............................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................TAGTGGAAAC------CGAACACT-AGA.......................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................TGGAAAC------CGAACACT-AGATTGACTTT...............................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................AACACCTACAGTGTGACCAG-CGTCTT.........................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.......................................................................................................................CCGCAAACACCTACAGTGT......................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
..............................................................................................................................CACCTACAGTGTGACCAG-CGTCT..........................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................ATTGACTTTTAAA--AGCTGTGCC................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................A------TGACAAGTTATAAATTTT..................................................................................1911.0010000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................AACACT-AGATTGACTTTTAAA--AGCT.....................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................TTTCGGTCACACTTGCCACT...........................................................................................................................2011.0010000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................TTATGTTAATTTTAGTGGAAA..........................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................AAC------CGAACACT-AGATTGA...................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................CC-ATACCATTTTCGGTTC......................................................................................................................................18110.0910000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TAGT--------------------------------------------TTTAATGA----ACCTAAAT-----AA-AAAATG-ATTGTTATTT---------------------T---TCCTTAAACACCTTCAGTGTGCCCAG-CGCCATAGATTGG-TTAAATGT-------------CAG--------CAACACGCGTTCTTCCTCTGATGGCG------------AAAAT--AAC----------------------------------------AC-ATACCATTTTCGGTCACACTTGCCACTTCATTATAACCTTAAAA------TGACAAGTTGTAAATTTTTTTTTATGTTAATTTTAGTGGAAAC------CGAACACT-AGATTGACTTTCCAA--AGCTGTGCCGCAGAGT---GTCG--SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................CCAA--AGCTGTGCCGCAGAGT---GT....2211.0010000100
..............................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAA--AGCTGTGCCGCAGAGT---GT....2511.0010000010
droYak3
AAGT--------------------------------------------CTTAATGAACAAACCTAATT-----AA-AAAATT-GTTGTTATTT---------------------T---TCTGTAAG------CAGTGTGCCCAG-AGCCATAGATTGG-TTAAATGA-------------CAG--------CAACACGCGTTTTTCCGCTGATGGCT------------AA-ATG--CC----------------------------------------CT-ATACCATTCTCGGTCACACTTGCCACTTCATTATAACCTTAAAA------TGACAAGTTATAAATTTTT-TTTATGTTAATTTTAGTGGAACC------CGAACACT-AGATTGACTTTCCAA--AGCTGTGCCGCAAAGT---GCCG--SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................TTCCAA--AGCTGTGCCGCAAAGT---GCC...2511.00101000000000
................................................................................................................................................................................................................................................................................................................................................................................TGGAACC------CGAACACT-AGATTGACTTC...............................2611.00101000000000
droEug1
TAAG--------------------------------------------GATA-----TA--------A-----AC-CAAATT-ATTGTTCTTT---------------------C---TCCGAAACTGTCTGTAGACCAAGATG-CGATATTAATCGC-TAAAATGT-------------CAGTGGCAC--CTACACGCGTTCTTTCGCTATTCGCC---------------------C----------------------------------------AC-TTATTGTGTTTGGTCACACTCGTCACTTCATTATAACCTTAAAA------TGACAAGTTATAATTTTTT-TTAATGTTAATTTTAGTGGAAAC------CGAAAGCC-AAACCGACTTTGAAA--TACTGTGCAGTGAAGT---GCCG--SizeHit CountTotal NormTotal
No Reads
droBia1
TAGTTAAAGTC--------------------------------------AT--------AATT-AAAGA----AAGAAAATA-ATTATTATTT---------------------C---TCCGGAAT--AATATAGTGTGACCTG-CGATATTCATCCC-TAAAATAG-------------CAGTGTCACT-CAACACGCGTTCTGCAGTTATTAACC---------------------------------------------------------------A-AGGCGATTCTTGGTCACACTCGCCACTTCATTATAACCTTAAAA------TGACAAGTTATAAATTTTT-TTTATGTTAATTTTAGTGGAAAC------CCTACACT-AAATCGACTTTTAAA--AGCAGTGCCGTGAAGC---TCCA--SizeHit CountTotal NormTotal
No Reads
droTak1
TTGT--------------------------------------------TTAAAAA--AA-ATCCAAAT-----A---------T---TTATTT---------------------------TGCGAATATCTTTAGTGTGACCTCCCGACATTCATCCG-CGAAATAT-------------CAGTGGCAAC-CGACACGCGTTCTTCCGCTTTTCACC--------------------------------------------------------------AA-ATATGTCGTTTGGCCACACTCGCCACTTCATTATAACCT-AAAA------TGACAAGTTGTAA-TTTTT-TTTATGTTAATTTTAGTGGAAAC------CGAACACT-AGATCGTTTTTTAAG--ACCATTGCCGTGAAGT---GCCG--SizeHit CountTotal NormTotal
No Reads
droEle1
TTTA--------------------------------------------TTTAAAG--------TAAAT-----AC-GAAATA-TTTGTTATTT---------------------A---TTGAAGAATAACTCTAGTGTGACCTG-CGATAGTATTCGC-TTAAATAT-------------CCGTGGCAA--CGACACGCACTCTTTCGCTATTCACC--------------------------------------------------------------TC-ATGCGCGGTTTGGCCACACTCGGCACTTCATTATAACCTTAAAA------TGACAAGTTATAAATTTTT-TTTATATTAATTTCAGTGGTAAC------CGAACACT-AAATCCACTTTCAAG--AGAAGTGCAGTGCAGT---GCCG--SizeHit CountTotal NormTotal
No Reads
droRho1
TAGTTAA-GTCTTTGTTATTACCTTAAATATGATTCGATTTTAGTTTATTT-------AAATGTAAGT-----AA-AAAATA-TTTTTTATAT---------------------CTT-CTGCCGAATTTCTATAGTGTGACCTG-CGATAATCATCCC-TAAAATAT-------------CCGTGGCAA--CAACACGCGTTCTTCCGCTAATCACC--------------------------------------------------------------TC-ATTCGCTGTTTGGCCACACTCGGCACTTCATTATAACCTTAAAA------TGACAAGTTATAAATTTTT-TTTATATTAATTTCAGTGGAAAC------CGAACACT-AAATCCACTTTAAAG--AGAAGTGCAGTGAAGT---GCCG--SizeHit CountTotal NormTotal
No Reads
droFic1
CC-------------------------------------------------AAAG-------T-GAATA----CA-AAAATGTGTTTTTGTTT--------------------------TGCCAAATCTCTTTAGTGTGACCTC-CGATATTCATCAC-CAAAACGT-------------CAGTGGCAAT-CAATACGCGTTCTTCCGCTATTCACC--------------------------------------------------------------AC-ACTCGATGATTGGGCACACTTGTCACTTCATTATAACCTTAAAA------TGACAAGTTATAAATTTTT-TTTATGTTAATTTTAGTGGAAAC------CGAACACT-AAATCGTTTTTTAGG--AGCAGTGCAGTGAAGT---GTCG--SizeHit CountTotal NormTotal
No Reads
droKik1
TAGT--------------------------------------------GTTTATATATATATCCT---------------------TTTATTTTGTATAAAATAAATTTCGTATTATCTC--CGACAATCTTTAGACTGACCAG-AGTTGTTTGTGGTCTATAATAT-------------CTGTTGCAGGAGAACACGCATTCTCTTGCATTTCACCCTACTGAAGGATTA-ATTTTTC--------------------------------------------TAAGTTTCTTGGTCACACTTGCCACTTCATTATAACCTTAAAA------TGACAAGTTATAAATTTTG-TTAATGTTAATTTTAGTGGGAAC------CGAACCTT-AAATCGACTATTAAACTAGACGTGCAGCAAAGT---GCCG--SizeHit CountTotal NormTotal
No Reads
droAna3
A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGATATCTGGTCACACTT--CAACACATTATAACCTTAAAA------TGACAAGTTATAA-TTTTT-TGTATGTTAATTTTAGTGGGAAG-------AAACATT-AATTTGACCATTAAACCTCCCGTGCCCTGAA-A---GCCG--SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
CATTTATAATT---------------------------------CTTATTT-AAAAACAATCTAAAAG-CC---------------------------------------------------------GCCATGGAATAATCTT-AGATATTCATCGCATAACATATTGTTTTGGACACACCGTAGAAAGCGAAGACGGG-----------------------------------------------------------------------------------------CTCTGGTCACACTTTC-AACACATTATAACCTTAAAA------TGACAAGTTATAA-TTTTT-TGTATGTTAATTTTAGTGAAAA-------GAAACATT-AATTTGACCATTAAACCACCCGTGAACTGAA-A---GCTG--SizeHit CountTotal NormTotal
No Reads
dp5
GTGA--------------------------------------------TTCAAAATTCA--------T-----AT-GAAATT-ATTTTTTTTG-----------------------------TGA---------CGATGTCCAA-CATTATTTATCGC-TGAAATAT-------------TTC--------TA------------TCGTTATTTTTCTTGTAGACGATTTA-ATTTTTC----------------------------------------AT-ATTCAATGTTTGGTCACACTCGGCCATTCTTTATAACCTTAAAA------TGACAAGTGATTATTTTC----GATTTTATATTTAGGGGAC-TCGGACTCGAAGCTTTAGA-TGTCCGCAAAG--ATCAATGCAG---AGTGGCAC----SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................................................................................................................................................................................................................................................................................................................................................................................AAGCTTTAGA-TGTCCGCAAA............................2011.0010100000000
..............................................................................................................................................................................................................................................C----------------------------------------AT-ATTCAATGTTTGGTCAC.....................................................................................................................................2011.0010010000000
..............................................................................................................................................................................................................................................................................................................................................ACAAGTGATTATTTTC----GATTTT........................................................................2211.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................TTC----GATTTTATATTTAGGGGAC-TCGGA.....................................................2711.0010000000001
droPer2
TATA--------------------------------------------TTCAAAG--TGATTCAAAAT-TCATAT-GAAATT-ATTTTTTTTG-----------------------------TGA---------CGATGTCCAA-CATTATTTATCGC-TGAAATAT-------------TTC--------TA------------TCGTTATTTTTTTTGTAGACGATTTA-ATTTTTC----------------------------------------AT-ATTCAATGTTTGGTCACACTCGGCCATTCTTTATAACCTTAAAA------TGACAAGTGATTATTTTC----GATTTTATATTTAGGGGAC-TCGGACTCGAAGCTTTAGA-TGTCCGCAAAG--ATCAATGCAGAGTGGC---ACTG--SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................ACTCGAAGCTTTAGA-TGTC..................................1915.005500000
....................................................................................................................................................................................................................................................................................................................................................................................C-TCGGACTCGAAGCTTTAGA-T.....................................2112.002200000
.............................................................................................................................................................................................................................................................................................................................................................C----GATTTTATATTTAGGGGAC-TCGGACTCG.................................................2912.002200000
..............................................................................................................................................................................................................................................................................................................................................................................................................CGCAAAG--ATCAATGCAGAGTGGC---ACTG--2711.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................CTCGAAGCTTTAGA-TGTCC.................................1911.001010000
....................................................................................................................................................................................................................................................................................................................................................................................C-TCGGACTCGAAGCTTTAGA-TGTC..................................2411.001100000
.....................................................................................................................................................................................................................................................................................................................................................................TTTATATTTAGGGGAC-TCGGACTCGA................................................2611.001100000
..............................................................................................................................................................................................................................................................................................................................................................................AGGGGAC-TCGGACTCGAA...............................................1811.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................CGCAAAG--ATCAATGCAGAGTGGC---......2311.001000001
droWil2
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCCACACTCGACAG----TTATAACCTTAAAAACGATAAGACAAGTGACAAATTTCT-TT-----TTATTTTCGTGACAAAAAAAAAAGTAAAATCAAT-TGTAAC---TA--AACAGTACCGCAAATT---GCCGTGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................................................................................................................................................................................................................................................................................................................................AAGACAAGTGACAAATTTCT-................................................................................2011.00101000
.........................................................................................................................................................................................................................................................................................................................................ATAAGACAAGTGACAAATT....................................................................................1911.00100010
droVir3
TGTTAAAAAT--------------------------------------TGTAAAGAGTAGTGC-------------GAAGTT-TTTAATT-------------------------------------------------------------------------------------------------------------------------------------------TA-ATGTTTTAAAGAGTTTGCGTTTTGGTAAAAATCTGCAAGCATTTTGTGCGTAACTATGTCTGGTCACACATAACA------TATAACCTAAAAAA-----TGACAAGTGACAAATTTCT-TTTTTGTTCATTTTA-----------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................................................................................................................................................................................................................................................................................................................ACCTAAAAAA-----TGACAAGTGAC.........................................................................................2111.001010000000000000000000000000000000000000000000000000000000000000
..............................................................C-------------GAAGTT-TTTAATT-------------------------------------------------------------------------------------------------------------------------------------------TA-ATGTT...................................................................................................................................................................................................2111.001000000000000000000000000000000100000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................AAAA-----TGACAAGTGACAAA......................................................................................1811.001000000000000000000000000000001000000000000000000000000000000000
................................................................................................................................................................................................................................................................GTAAAAATCTGCAAGCATTTTG..........................................................................................................................................................2211.001000000000000000000000000000000010000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................AAATTTCT-TTTTTGTTCATTTT..................................................................2211.001000000000000010000000000000000000000000000000000000000000000000

Generated: 05/18/2015 at 11:48 AM