ID:

dsi_13399

 Coordinate:

3r:20276303-20276452 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-9.8 -9.6 -9.5

Flybase annnotation

CDS [3r_20276449_20278795_-]; three_prime_UTR [3r_20276023_20276448_-]; exon [3r_20276023_20278795_-]

No Repeatable elements found

Sense Strand Reads

##########################################################################################################################################################################################################################################################
AGGCTAAGTGCTCCGAAAACTGGCTTCAACACCGCCGCCTACAACACCATGTAAAGGCCATGCTCTGCTTAACAACATGCTAACTGCAACCTGCAACATTCACATACCACTTGCAACTTGCAATCCATACCCTGTAGCCACTAAGGATCGTCCTCATCCTATCGCCTGCTTTACTTATTTATATACTTGCCCGCTTTCGACCATTTTGTGTTTTTTGTCCAACAATCGAACACCACCACCCCATCCATCC
***********************************************************************************.(((((..(((((..............)))))..)))))((((..................))))......************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 M023
head
 M053
female body
 SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 SRR902009
testis
...................................................................................CTGCAACCTGCAACATTCACATACC.............................................................................................................................................. 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0
...............................................................................................................................TACCCTGTAGCCACTAAGGATCGTCCT................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................................................TGCAATCCATACCCTGTAGCCACTAAGGA....................................................................................................... 29 0 1 1.00 1 0 0 0 0 0 1 0 0 0
............................................................................................................................................CTAAGGATCGTCCTCATCCT.......................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0
AGGCTAAGTGCTCCGAAAACT..................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0
..............................................................................................................................ATACCCTGTAGCCACTAAGGATCGTCCT................................................................................................ 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..............................................................................................................................ATACCCTGTAGCCACTAAGA........................................................................................................ 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0
....................................................................................................................................TGTAGCCACTAAGGATCGTCCTCATC............................................................................................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TTGTGTTTTTTGTCCAACAATCGA..................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.............................................................................................................................................TATGGATCGTCTTCATCATATC....................................................................................... 22 3 1 1.00 1 0 0 0 0 0 0 1 0 0
....................................................................................................................................................CGTCCGCAGCCAATCGCCTGC................................................................................. 21 3 4 0.25 1 0 1 0 0 0 0 0 0 0
..............................................................................................................................ATACACTGTAGTCACTGAGG........................................................................................................ 20 3 6 0.17 1 0 0 0 1 0 0 0 0 0
.....................................................................................................................................GTAGCCACCAAGGAT...................................................................................................... 15 1 16 0.06 1 0 0 0 0 0 0 0 1 0
................................................................................................................................................GAAACGTCCTCAACCTAT........................................................................................ 18 3 20 0.05 1 0 0 0 0 0 0 0 0 1
........................................................................................................................................................................................................................GTCCAACGATCGAAGA.................. 16 2 20 0.05 1 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

TCCGATTCACGAGGCTTTTGACCGAAGTTGTGGCGGCGGATGTTGTGGTACATTTCCGGTACGAGACGAATTGTTGTACGATTGACGTTGGACGTTGTAAGTGTATGGTGAACGTTGAACGTTAGGTATGGGACATCGGTGATTCCTAGCAGGAGTAGGATAGCGGACGAAATGAATAAATATATGAACGGGCGAAAGCTGGTAAAACACAAAAAACAGGTTGTTAGCTTGTGGTGGTGGGGTAGGTAGG
************************************************************************************************.(((((..(((((..............)))))..)))))((((..................))))......*********************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 O001
Testis
 SRR1275487
Male larvae		 SRR553488
RT_0-2 hours eggs
.........................................................................................................................................................................................................................AGGTTGTTAGCTTGTGGTG.............. 19 0 1 2.00 2 2 0 0 0 0 0 0 0
..................................GGCGGATGTTGTGGTACATTT................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................................................TTAGGTATGGGACGTCGGTGGT........................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0
............................TGTGGCGGCGGATGTTGTGGT......................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
...................................................................................GACGTTGGACGTTGTAAGTGT.................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................GAAAGCTGGTAAAGCACAA...................................... 19 1 1 1.00 1 0 1 0 0 0 0 0 0
..................................................................................................................................................TAGCAGGCGTCGGTTAGCGGAC.................................................................................. 22 3 1 1.00 1 0 1 0 0 0 0 0 0
.................................CGGCGGGTGTTGTGGGAC....................................................................................................................................................................................................... 18 2 12 0.75 9 9 0 0 0 0 0 0 0
..........................................................................................................GGTGAATGTTGTTCGTTAGGTA.......................................................................................................................... 22 3 2 0.50 1 0 0 0 1 0 0 0 0
...................................GCGGATGTTGTGGGCCAT..................................................................................................................................................................................................... 18 2 2 0.50 1 0 0 0 0 1 0 0 0
......................CCAAGTTGGGGCGGAGGATGT............................................................................................................................................................................................................... 21 3 3 0.33 1 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................AAAAGAGGTTGTAAGGTTGT.................. 20 3 16 0.19 3 0 0 0 0 0 3 0 0
...................................................................................................................................................AGCAGGCGTCGGTTAGCGGA................................................................................... 20 3 6 0.17 1 0 1 0 0 0 0 0 0
.............GCATTTGACCGAAGT.............................................................................................................................................................................................................................. 15 1 7 0.14 1 0 0 0 1 0 0 0 0
....................................................................................................................................................GCAGGCGTCGGTTAGCGGAC.................................................................................. 20 3 7 0.14 1 0 1 0 0 0 0 0 0
.......................................................CCGGTACGTGACGAGTTG................................................................................................................................................................................. 18 2 7 0.14 1 0 0 0 1 0 0 0 0
...........................................................................................................................................................................................ACGGGTGACAGCTGGTAA............................................. 18 2 7 0.14 1 0 0 0 0 1 0 0 0
...................................................ATTGCTGCTACGAGACGAAT................................................................................................................................................................................... 20 3 7 0.14 1 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................AAAACAGGATGTCAGCTT.................... 18 2 9 0.11 1 0 1 0 0 0 0 0 0
.........................................................................................................................................................AGAAGGTTAGCAGACGAAAT............................................................................. 20 3 9 0.11 1 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................................AAAAAACAGGTTGTTAT....................... 17 1 9 0.11 1 0 1 0 0 0 0 0 0
.........................................................................................................................................GGTGATTCCTAGCAGCGGA.............................................................................................. 19 3 11 0.09 1 0 1 0 0 0 0 0 0
....................................................................................................................................................GCAGGGGTAGTATAG....................................................................................... 15 2 20 0.05 1 0 0 0 1 0 0 0 0
.....................................................................................................................................................................................................................................TTTGGTGGTGGGCTAGGGA.. 19 3 20 0.05 1 0 0 0 0 0 0 1 0
.......................................ATGTTGTGGTCGATTTC.................................................................................................................................................................................................. 17 2 20 0.05 1 0 0 0 1 0 0 0 0
......TCAAGAGGCTTTTGA..................................................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:20276253-20276502 - dsi_13399 AGGCTAAGTGCTCCGAAAACTGGCTTCAACACCGCCGCCTACAACACCATGTAAAGG-CC--ATGCTCTGCTTA--ACAAC------ATGCTAAC-------T-GCAACCTGCAACATTCACAT--------ACCACTTGC---------------------------------A--A------C------------------------------------------------------TTGCAATCCATACC------CTGTAGCCACTAAGG-------------------ATC-----------GTCCT--------------------CATCCTATC-------GCC--TGCTT-TACTT-ATTTATATACTTGCCCGCTTTCGACCATT---TTG-T-GT-TTTTTGTCCAA---CAA-----------------TCGA-------ACACCAC-------CACCC---------------------C-A----TCCATCC
droSec2 scaffold_0:21107351-21107600 - AGGCTAAGTGCTCCGAAAACAGGCTTCAACACCGCCGCCTACAACACCATGTAAAGG-CC--ATGCTCTGCTTA--ACAAC------ATGCTAAC-------T-GCAACCTGCAACATTCACAT--------CCCACTTGC---------------------------------A--A------C------------------------------------------------------TTGCAATCCATACC------CTGTAGCCACTAAGG-------------------ATC-----------GTCCT--------------------CATCCTATC-------GCC--TGCTT-TACTT-ATTTATAAACTTGCCCGCTTTCGACCATT---TTG-T-GT-TTTTTGTCCAA---CAA-----------------TCGA-------ACACCAC-------CATCC---------------------C-A----TCCATCC
dm3 chr3R:20764955-20765204 - AGGCTAAGTGCTCCGAAAACAGGCTTTAACACCGCCGCCTACAACACCATGTAAAGG-CC--ATGCTCTGCTTA--ACAAC------ATGCTAAC-------T-GCAAACTGCAACATTCACAT--------ACCACTTGC---------------------------------A--A------C------------------------------------------------------TTGCAATCCATACC------CTGTAGCCACTAAGG-------------------ATC-----------GTCCT--------------------CATCCTATC-------GCC--TGCTT-TACTT-ATTTATATACTCGCCCGCTTTCGACCATT---TTG-T-GT-TTTTTGTCCAA---CAA-----------------TCGA-------ACACCAC-------CACCC---------------------C-A----TCCATCC
droEre2 scaffold_4820:7288790-7289045 + AGGCTAAGTGCTCCGAAAACAGGCTTCAACACCGCCGCCTACAACACCATGTAAAAC-CC--ATGCTCTGCTTA--ACAAC------ATGCTAACTGCATACT-GCAACCTGCAACATTCACAT--------ACCACTTGC---------------------------------A--A------C------------------------------------------------------TTGCAATCCATACC------CTGTAGCCACTAAGG-------------------ATC-----------GTCCT--------------------CATCCTCTC-------GCC--CGCTT-TACTT-ATTTATATATTTGCCCGCTTTCGACCATT---TTG-T-GT-TTTTTGTCCAA---CAA-----------------TCGA-------ACACCAC-------CACCC-----------------------T----TCCATCC
droYak3 3R:25734537-25734792 + AGGCTAAGTGCTCCGAAAACAGGCTTCAACACCGCCGCCTACAACACCATGTAAAGG-CC--ATGCTCTGCTTA--ACAAC------ATGCTAACTGCAAACT-GCAACCTGCAACATTCACAT--------ACCACTTGC---------------------------------A--A------C------------------------------------------------------TTGCAATCCATACC------CTGTAGCCACTAAGG-------------------ATC-----------GTCCT--------------------CATCCTCTC-------GCC--CGCTT-TACTT-ATTTATATATTTGCCCGCTTACGACCATT---TTG-T-GT-TTTTTGTCCAA---CAA-----------------TCGA-------ACACCAC-------CACCC-----------------------T----TCCATCC
droEug1 scf7180000409692:641020-641267 + AGGCTAAGTGCTCCAAAAACAGGCTTCAATACAGCCGCCTACAACACCATGTAAAGG-CC--ACAATCTGCTTA--ACACC------ATACAAAC-------T-GCAACCTGCAACATTCACAT--------GCCACTTGC---------------------------------A--A------C------------------------------------------------------TTGCAATCCATACC------CTTTAGCGAATAAGG-------------------ATC-----------GTCTT--------------------CATCCTCTC-------ACC--TGCTT-TACGT-ATTTATATATTTGCCCGCTTTCGCCCATT---TTG-T-GT-TTTTTGTCCAA---CAA-----------------TCGA-------ACACCAC-------CACCT----------------------------CCCCCTC
droBia1 scf7180000302136:1554821-1555077 - AGGCTAAGTGCTCCGAAGACAGGCTTCAACACCGCCGCCTACAACACCATGTAAAGG-CC--ACGCTCCGCTTA--ACCAC------ATACAATC-------T-GCAACCTGCAACATTCACAT--------GCCACTTGC---------------------------------A--A------C------------------------------------------------------TTGCAATCCATACC------CTATAGCCACTAAGA-------------------ATC-----------GTCCC--------------------CATCCTGTC-------ACC--CGCTT-TACGT-ATTTATATATTTGCCCGCTTTCGCCCATT---TTG-T-GT-TTTTTGTCCAA---CAA-----------------TCGA-------ACACCTACACCCACCACCC---------------------C-C----ATCATCC
droTak1 scf7180000415242:164968-165195 + AGGCTAAGTGCTCCCAAAACAGGCTTCAACACCGCCGCCTACAACACCATGTAAAGG-CC--A-------CTTA--ATCAC------ATGCAAAAC---CAAT-GCAACCTGCAACATTCACAT--------GCCACTTGC---------------------------------A--A------C------------------------------------------------------TTGCAATCCATAAC------CCAT-------------------------------------------------------------------------CTCTC-------ACC--CGCTT-TACGT-ATTTATATATCTACCCGCTTTGGCCCATT---TTG-T-GT-TTTTTGTCCAA---CAA-----------------TCAA-------ACACCCC-------AATCC---------------------G-AAATCCCCATCC
droEle1 scf7180000491212:64797-65043 - AGGCTAAGTGCACCCAAGACAGGCTTCAACACCGCCGCCTACAACACCATGTAAAGG-CCACACGCTCTGCTTA--A-------------------------------CCTGCAACATTCACAT--------GCCACTTGC---------------------------------A--T------C------------------------------------------------------TTGCAATCCATACCATACCCCCGTAGCCACTAAGG-------------------ATC-----------ATCCTCA------------------CAATCTCTC-------GCC--CGCTT-TACGT-ATTTATATATTCGCCAGCTTATGCCCATT---TTG-T-GT-TATTTGTCCAA---CAA-----------------TCAA-------ACACCTACACC---CACCA---------------------C-A----CACATCC
droRho1 scf7180000779488:17733-17966 + AGGCTAAGTGCACCCAAAACGGGCTTCAACACCGCCGCCTACAACACCATGTAAAGG-CC--ACGCTCTGCTTA--T-------------------------------CCTGCAACGTTCACAT--------GCCACTTGC---------------------------------A--A------C------------------------------------------------------TTGCAATCCATACC-----CCCGTAGCCACTAAGG-------------------ATC-----------ATCCT--------------------CATCCTCTC-------GCC--CGCTT-TACGT-ATTTATATATTCGACCGCTT-CGCCCATT---TTG-T-GT-TTTTTGTCCAA---CAA-----------------TCGA-------ACACCTT-------CATCG---------------------CCA----CCCACCA
droFic1 scf7180000454055:660614-660863 - AGGCTAAGTGCTCCCAAAACAGGCTTCAATACCGCCGCCTACAACACCATGTAAAGG-CC--ACGCTCTGCTTA--ACAAC------ATCTAAAC-------T-GCAACCTGCAACATTCACAT--------GCCACTTGC---------------------------------A--A------C------------------------------------------------------TTGCAATCCATACA------ACGTAGCTTATAAGGA------------------ATC-----------GTCCT--------------------CATCCTCAC-------GCC--CGCTT-TACGT-ATTTATATATTTGCCCGCTATCACCCATT---TTG-T-GTGTTTTTGTCCAA---CAA-----------------TCGA-------ACACCTC-------CACCC----------------------------ACCATCC
droKik1 scf7180000302388:1175173-1175414 + AGGCTAAGTGCCCCCAAAACGGGCTTCAACACCGCAGCCTACAACACCATGTAAAGG-CA--ACGCTCTGCTTA--AGAAC------ATCCCAAC-------T-GCAAC--------------------------------------------------------------------A------C------------------------------------------------------CAGCAATCCATACC-----CCATTAGCCACTAAGGAAACGTCGTCATCGTCCTCATC-----------GTCCC--------------------CATCCCTTC-------GCC--CGCTT-TACGT-ATTTATATATTTGCCTGCTTTTGTCCATT---TTG-T-GT-T-TCTGTCCAA---CAA-----------------TTAA-------ACACCAT-------CATCA----------------------------CTAATCA
droAna3 scaffold_13340:18889099-18889328 + AGGCTAAGTGCTCCGAAAACGGGCTTCAACACAGCCGCCTACAACACCATGTAAAGCTCC--AAGATCTGCTTA--ACTGC----------------------------CTGAAA------CAT--------GCAACTTTC---------------------------------A--A------C-------------------------------------------------CATAAGGGCAATCCATAA---------------------G-------------------ATC-----------GCTCG----------CTC-------CATCCAACC-------GCCCTCGCTT-TACGT-ATTTATATGTTTTCCTGCTTTCGCCCATTTGTTTG-T-GCTTTTTTGTCCAA---CAA-----------------TCCA-------ACCACAC-------CACCC---------------------A-A----CCCCACC
droBip1 scf7180000395652:288580-288828 - AGGCTAAGTGCTCCCAAAACGGGCTTCAACACGGCCGCCTACAACACCATGTAAAGCTCC--AACATCTGCTTA--TCTGC------CTGAT----------------------------ACAT--------GCAACTTTC---------------------------------A--A------C------------------------------------------------------GTGCAATTCATAA---------------------G-------------------ATC-----------GC-TC--------------------CATCCAACC-------GCCCTCGCTT-TACGT-GTTTATATGTTTTCCAGCTTTCGCCCATTTGTTTG-T-GTTTTTTTGTCCAA---CAA-----------------TCCAATGTCCAACACCAC-------CACCTCCCACCACAGACCACAGGCCAC-A----TACAGCC
dp5 2:10971192-10971409 + AGGCTAAGTACACCAAAGCCAGGCTTCAACACGGCTGCATACAATACCATGTAACGA--A--ATGCTATTTCTA--CTTACTCATTA----------------AACAAGCTCCAACT---------------TCCACCTCC---------------------------------A--T------CTCA---CAACCAC----------------------A------------TCA-----------------------TAATAGCCACTAAGG-------------------ATC-----------GCCCG--------------------AG---CATT-------GTC--TGCTT-TTCGT-ATTTATATTTCCCCCCGCTTTTGTCTATG---TTA-CCGTC------------------------------------AC-------ATC-----------CC-CT---------------------C-A----TAATGAC
droPer2 scaffold_0:9496076-9496293 - AGGCTAAGTACACCAAAGCCAGGCTTCAACACGGCTGCATACAATACCATGTAACGA--A--ATGCTATTTCTA--CTTACTCATTA----------------AACAAGCTCCAACT---------------TCCACCTCC---------------------------------A--T------CTCA---CACCCAC----------------------A------------TCA-----------------------TAATAGCCACTAAGG-------------------ATC-----------GCCCG--------------------AG---CATT-------GTC--TGCTT-TTCGT-ATTTATATTTCCCCCCGCTTTTGTCTATG---TTA-CCGTC------------------------------------AC-------ATC-----------CC-CT---------------------C-A----TAATGAC
droWil2 scf2_1100000004943:12658318-12658569 + AGGCTAAGTTTACCAAAGCAAAGCTTCAACACCGCTGCTTACAATACCATGTAACGA--A--ATGCTCCAACTA--TCTAT----------------------------------CAATCATATATCCCATTTCCATATCC---------------------------------A--T------ATCCTCTCGATCCC----------------------ATTTTTTGTTTTTTCA-----------------------TAATAGTCCCTAAGAC------------------ATT-----------TTTCACA------------------C-ATTTGTA-------GTC--TGCTTTTTCAT-ATTTATATATATATATATTT-TGT--------TTGCT-GT-TTTTTTCCCCATATCAA-----------------CCGA-------CCATCAC-------CCCTT-----------------------T----TTACCCC
droVir3 scaffold_13047:12881070-12881396 - AGGCTAAGTTTACCAAAGCAAAGCTTCAACACCGCTGCATACAATACCATGTAAAGG--A--ATGCTCTTTCTT--ACTAC------ACACAATT-------------------------------------TCTCTTTCTCTCTCTATTACTCTCTCTCGCGGACACACAGAC---ACACACACACA---T----ACAGACACCCATATTGAC-------------------------ACAGAACTCATAA-------AAATAGTAACTAAGCA------------------GTCCT--AAAGCT-ATTATTATTTTTGCTTTTCAGCTCGAC---ACTTGCCTATTATT--TGTAT-TAATT-ATATGTATTTTT----GCTTTTATTCACT-G-TTC-ACGTT-----GCGTTA---CATTTGTGTCTCTCTCGCCGACGC-------GCCTCCC-------CAC------------------------------CCCATTC
droMoj3 scaffold_6540:28973506-28973789 + AGGCTAAGTTTACCAAAGCAAAGCTTCAACACCGCTGCATACAATACCATGTAAAGG--A--ATGATCTTTCTT--ACTA-----------------------GAC------------------------------------------------------------ACACATAC---ACACACACTCA---GTCTCACAAAAAC--ACGTCTACACAAAAC------------------TCGTAATAATAACT------AAGCAGGC-----------------------------CTATAAAGCACTTCATTATTTTTGCTTTTCAGCTCGAC---ACTTGCCTATTAC----TCTG-TATTTATTTTATGTATT-TTTCGCTTTTATTCATC-A-TTG-TTGTTACGTTGCCTTA---CATA----------------TGTC-------TCTCTCT-------CACCG---------------------C-A----TCCCGCC
droGri2 scaffold_15074:1816937-1817057 + AGGCTAAGTTTACCAAAGCAAAGCTTCAACACCGCTGCATACAATACCATGTAAAGG-AA--ATGCTCTTTCTATCTTTACTTACTA----------------CACCAAC--------------------------------------------------------ACACATACAACACACACACTCA---CACTCAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AGGCTAAGTGCTCCGAAAACTGGCTTCAACACCGCCGCCTACAACACCATGTAAAGG-CC--ATGCTCTGCTTA--ACAAC------ATGCTAAC-------T-GCAACCTGCAACATTCACAT--------ACCACTTGC---------------------------------A--A------C------------------------------------------------------TTGCAATCCATACC------CTGTAGCCACTAAGG-------------------ATC-----------GTCCT--------------------CATCCTATC-------GCC--TGCTT-TACTT-ATTTATATACTTGCCCGCTTTCGACCATT---TTG-T-GT-TTTTTGTCCAA---CAA-----------------TCGA-------ACACCAC-------CACCC---------------------C-A----TCCATCCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................................................................................C-------T-GCAACCTGCAACATTCACAT--------ACC..................................................................................................................................................................................................................................................................................................................................................................................2512.00200200000000000000
.........................................................................................................................................................................................................................................................TACC------CTGTAGCCACTAAGG-------------------ATC-----------GTCCT--------------------.............................................................................................................................................................................2711.00100100000000000000
................................................................................................................................................................................................................................................TGCAATCCATACC------CTGTAGCCACTAAGG-------------------A...................................................................................................................................................................................................................2911.00100010000000000000
............................................................................................................................................................................................................................................................................CTAAGG-------------------ATC-----------GTCCT--------------------CATCCT.......................................................................................................................................................................2011.00110000000000000000
AGGCTAAGTGCTCCGAAAACT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
........................................................................................................................................................................................................................................................ATACC------CTGTAGCCACTAAGG-------------------ATC-----------GTCCT--------------------.............................................................................................................................................................................2811.00100000001000000000
........................................................................................................................................................................................................................................................ATACC------CTGTAGCCACTAAGA-------------------....................................................................................................................................................................................................................2011.00100000010000000000
....................................................................................................................................................................................................................................................................TGTAGCCACTAAGG-------------------ATC-----------GTCCT--------------------CATC.........................................................................................................................................................................2611.00100000001000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................TTG-T-GT-TTTTTGTCCAA---CAA-----------------TCGA-------......................................................2411.00100000010000000000
droSec2
AGGCTAAGTGCTCCGAAAACAGGCTTCAACACCGCCGCCTACAACACCATGTAAAGG-CC--ATGCTCTGCTTA--ACAAC------ATGCTAAC-------T-GCAACCTGCAACATTCACAT--------CCCACTTGC---------------------------------A--A------C------------------------------------------------------TTGCAATCCATACC------CTGTAGCCACTAAGG-------------------ATC-----------GTCCT--------------------CATCCTATC-------GCC--TGCTT-TACTT-ATTTATAAACTTGCCCGCTTTCGACCATT---TTG-T-GT-TTTTTGTCCAA---CAA-----------------TCGA-------ACACCAC-------CATCC---------------------C-A----TCCATCCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.....................................................................................................................TTCACAT--------CCCACTTGC---------------------------------A--A------C------------------------------------------------------TTGCA.....................................................................................................................................................................................................................................................................2411.0011000
dm3
AGGCTAAGTGCTCCGAAAACAGGCTTTAACACCGCCGCCTACAACACCATGTAAAGG-CC--ATGCTCTGCTTA--ACAAC------ATGCTAAC-------T-GCAAACTGCAACATTCACAT--------ACCACTTGC---------------------------------A--A------C------------------------------------------------------TTGCAATCCATACC------CTGTAGCCACTAAGG-------------------ATC-----------GTCCT--------------------CATCCTATC-------GCC--TGCTT-TACTT-ATTTATATACTCGCCCGCTTTCGACCATT---TTG-T-GT-TTTTTGTCCAA---CAA-----------------TCGA-------ACACCAC-------CACCC---------------------C-A----TCCATCCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................................................TGTAAAGG-CC--ATGCTCTGCTTA--ACAAC------A.................................................................................................................................................................................................................................................................................................................................................................................................................................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................C-----------GTCCT--------------------CATCCTATC-------GCC--TGCTT-T.................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................TACC------CTGTAGCCACTAAGG-------------------ATC-----------GTCC..................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTGTCCAA---CAA-----------------TCGA-------AC....................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................ATATACTCGCCCGCTTTCGAC...................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................TGC---------------------------------A--A------C------------------------------------------------------TTGCAATCCATACC------CTGTAGC...............................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................ACCACTTGC---------------------------------A--A------C------------------------------------------------------TTGCAATCCATACC------C.....................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTCCAA---CAA-----------------TCGA-------ACACCAC-------CACC....................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................TAGCCACTAAGG-------------------ATC-----------GTCCT--------------------CATCC........................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................ATC-----------GTCCT--------------------CATCCTATC-------GCC--TGCTT-T.................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................GCTTA--ACAAC------ATGCTAAC-------T-GCAAA............................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................TTGC---------------------------------A--A------C------------------------------------------------------TTGCAATCCATACC------CTGTAGC...............................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................GTAAAGG-CC--ATGCTCTGCTTA--.............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................CAGGCTTTAACACCGCCGCCTAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................T--------ACCACTTGC---------------------------------A--A------C------------------------------------------------------TTGCAATCCATACC------C.....................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGTCCAA---CAA-----------------TCGA-------ACACCAC-------CA......................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
AGGCTAAGTGCTCCGAAAACAGGCTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................AACAGGCTTTAACACCGCCGCCTAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................C------------------------------------------------------TTGCAATCCATACC------CTGTAG................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................ACAGGCTTTAACACCGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...CTAAGTGCTCCGAAAACAGGCTTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................TGCTTA--ACAAC------ATGCTAAC-------T-GCAAAC...........................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................ATGCTAAC-------T-GCAAACTGCAAC.....................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................TTTAACACCGCCGCCTACAACACCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................C-------T-GCAAACTGCAACATTCACA..............................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................ACTAAGG-------------------ATC-----------GTCCT--------------------CATCCTATC-------GCC--TGCTT-TAC...............................................................................................................................................3511.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................CAT--------ACCACTTGC---------------------------------A--A------C------------------------------------------------------TTGCAATCCAT...............................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................GTAGCCACTAAGG-------------------ATC-----------GTCCT--------------------CA...........................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................ACTAAGG-------------------ATC-----------GTCCT--------------------CATCC........................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................ACTAAGG-------------------ATC-----------GTCCT--------------------CATCCTATC-------GC...........................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................TAGCCACTAAGG-------------------ATC-----------GTCCT--------------------CA...........................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
...........................................................................................................................T--------ACCACTTGC---------------------------------A--A------C------------------------------------------------------TTGCAATCCATA..............................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................ACTAAGG-------------------ATC-----------GTCCT--------------------CATC.........................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGTCCAA---CAA-----------------TCGA-------ACACC.................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
................................................ATGTAAAGG-CC--ATGCTCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................TGCTAAC-------T-GCAAACTGCAACA....................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................T---TTG-T-GT-TTTTTGTCCAA---CAA-----------------TCGA-------A.....................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................CACTTGC---------------------------------A--A------C------------------------------------------------------TTGCAATCCATACC------......................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................TGTAGCCACTAAGG-------------------ATC-----------GTC...................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................GTAGCCACTAAGG-------------------ATC-----------GTCC..................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................GTAAAGG-CC--ATGCTCTGCTTA--AC...........................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................TTCGACCATT---TTG-T-GT-TTTTTGTCCAA---.....................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................TACC------CTGTAGCCACTAAGG-------------------ATC-----------GTCCT--------------------.............................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................CCTACAACACCATGTAAAGG-CC--...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTCCAA---CAA-----------------TCGA-------ACACC.................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTCCAA---CAA-----------------TCGA-------ACACCAC-------C.......................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAA---CAA-----------------TCGA-------ACACCAC-------C.......................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................A------C------------------------------------------------------TTGCAATCCATACC------CTGTA.................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
...............................................................TGCTCTGCTTA--ACAAC------ATGCTAAC-------T-GC...............................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................T-TTTTTGTCCAA---CAA-----------------TCGA-------ACACCAC-------CAC.....................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................ATTCACAT--------ACCACTTGC---------------------------------A--........................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................CATGTAAAGG-CC--ATGCTCTGCTT................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................TGTAGCCACTAAGG-------------------ATC-----------GTCCT--------------------.............................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................CC------CTGTAGCCACTAAGG-------------------ATC-----------GTCC..................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................ATACC------CTGTAGCCACTAAGG-------------------ATC-----------GTC...................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................ATTTATATACTCGCCCGCTTTCGACCAT................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................C------ATGCTAAC-------T-GCAAACTGC........................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................TCCATACC------CTGTAGCCACTAAGG-------------------ATC-----------......................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................CCCGCTTTCGACCATT---TTG-T-GT-TTTT...............................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGTCCAA---CAA-----------------TCGA-------ACACCAC-------CAC.....................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................TTGCAATCCATACC------CTGTAGC...............................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................AAGG-------------------ATC-----------GTCCT--------------------CATCCTATC-------GCC--TGTA....................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................TTGCAATCCATACC------CTGTAGCCACT...........................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................................................TGTAGCCACTAAGG-------------------ATC-----------GTCCT--------------------CA...........................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.....................................................................................................................................................................................................................................................................GTAGCCACTAAGG-------------------ATC-----------GTCCT--------------------.............................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.......................................................................................................................................ACTTGC---------------------------------A--A------C------------------------------------------------------TTGCAATCCATACC------......................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
..................................................................................................................................................................................................................................................CAATCCATACC------CTGTAGCCA.............................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...................................................................................................................................................................................................................................................................CTGTAGCCACTAAGG-------------------ATC-----------GTC...................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TTAACACCGCCGCCTACAACACC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................TTTCGACCATT---TTG-T-GT-TTTTTGTCCAA---C....................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................TTCACAT--------ACCACTTGC---------------------------------A--A------C------------------------------------------------------TTGCAATC..................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................CACTAAGG-------------------ATC-----------GTCCT--------------------CATCCTATC-------GCC--........................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................CATCCTATC-------GCC--TGCTT-TACTT-ATTTA.......................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................TGC---------------------------------A--A------C------------------------------------------------------TTGCAATCCATACC------CTGTAGCC..............................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................CACTAAGG-------------------ATC-----------GTCCT--------------------CATC.........................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................................................TGTAGCCACTAAGG-------------------ATC-----------GTCCT--------------------C............................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................T--------------------CATCCTATC-------GCC--TGCTT-TACTT-ATT.........................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................TC-------GCC--TGCTT-TACTT-ATTTATATA...................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................CCGCTTTCGACCATT---TTG-T-GT-TTTT...............................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................ACTT-ATTTATATACTCGCCCGCTTT.......................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
droEre2
AGGCTAAGTGCTCCGAAAACAGGCTTCAACACCGCCGCCTACAACACCATGTAAAAC-CC--ATGCTCTGCTTA--ACAAC------ATGCTAACTGCATACT-GCAACCTGCAACATTCACAT--------ACCACTTGC---------------------------------A--A------C------------------------------------------------------TTGCAATCCATACC------CTGTAGCCACTAAGG-------------------ATC-----------GTCCT--------------------CATCCTCTC-------GCC--CGCTT-TACTT-ATTTATATATTTGCCCGCTTTCGACCATT---TTG-T-GT-TTTTTGTCCAA---CAA-----------------TCGA-------ACACCAC-------CACCC-----------------------T----TCCATCCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....................................................................................................................................................................................................................................................................TGTAGCCACTAAGG-------------------ATC-----------GTCCT--------------------CA...........................................................................................................................................................................2412.0022000000
.......................................TACAACACCATGTAAAAC-CC--ATGCTCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
.....................................................................................................................................................................................................................................................................................................ATC-----------GTCCT--------------------CATCCTCTC-------GCC--CGC.....................................................................................................................................................2311.0011000000
.........................................................................................................................................................................................................................................................................................................................................................................................GCCCGCTTTCGACCATT---TT..........................................................................................................1911.0011000000
droYak3
AGGCTAAGTGCTCCGAAAACAGGCTTCAACACCGCCGCCTACAACACCATGTAAAGG-CC--ATGCTCTGCTTA--ACAAC------ATGCTAACTGCAAACT-GCAACCTGCAACATTCACAT--------ACCACTTGC---------------------------------A--A------C------------------------------------------------------TTGCAATCCATACC------CTGTAGCCACTAAGG-------------------ATC-----------GTCCT--------------------CATCCTCTC-------GCC--CGCTT-TACTT-ATTTATATATTTGCCCGCTTACGACCATT---TTG-T-GT-TTTTTGTCCAA---CAA-----------------TCGA-------ACACCAC-------CACCC-----------------------T----TCCATCCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................T-GT-TTTTTGTCCAA---CAA-----------------TCGA-------ACACCAC-------C.......................................2911.00100100000000
........................................................................................TGCTAACTGCAAACT-GCAACCTGCAACA....................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000000000
droEug1
AGGCTAAGTGCTCCAAAAACAGGCTTCAATACAGCCGCCTACAACACCATGTAAAGG-CC--ACAATCTGCTTA--ACACC------ATACAAAC-------T-GCAACCTGCAACATTCACAT--------GCCACTTGC---------------------------------A--A------C------------------------------------------------------TTGCAATCCATACC------CTTTAGCGAATAAGG-------------------ATC-----------GTCTT--------------------CATCCTCTC-------ACC--TGCTT-TACGT-ATTTATATATTTGCCCGCTTTCGCCCATT---TTG-T-GT-TTTTTGTCCAA---CAA-----------------TCGA-------ACACCAC-------CACCT----------------------------CCCCCTCSizeHit CountTotal NormTotal
No Reads
droBia1
AGGCTAAGTGCTCCGAAGACAGGCTTCAACACCGCCGCCTACAACACCATGTAAAGG-CC--ACGCTCCGCTTA--ACCAC------ATACAATC-------T-GCAACCTGCAACATTCACAT--------GCCACTTGC---------------------------------A--A------C------------------------------------------------------TTGCAATCCATACC------CTATAGCCACTAAGA-------------------ATC-----------GTCCC--------------------CATCCTGTC-------ACC--CGCTT-TACGT-ATTTATATATTTGCCCGCTTTCGCCCATT---TTG-T-GT-TTTTTGTCCAA---CAA-----------------TCGA-------ACACCTACACCCACCACCC---------------------C-C----ATCATCCSizeHit CountTotal NormTotal
No Reads
droTak1
AGGCTAAGTGCTCCCAAAACAGGCTTCAACACCGCCGCCTACAACACCATGTAAAGG-CC--A-------CTTA--ATCAC------ATGCAAAAC---CAAT-GCAACCTGCAACATTCACAT--------GCCACTTGC---------------------------------A--A------C------------------------------------------------------TTGCAATCCATAAC------CCAT-------------------------------------------------------------------------CTCTC-------ACC--CGCTT-TACGT-ATTTATATATCTACCCGCTTTGGCCCATT---TTG-T-GT-TTTTTGTCCAA---CAA-----------------TCAA-------ACACCCC-------AATCC---------------------G-AAATCCCCATCCSizeHit CountTotal NormTotal
No Reads
droEle1
AGGCTAAGTGCACCCAAGACAGGCTTCAACACCGCCGCCTACAACACCATGTAAAGG-CCACACGCTCTGCTTA--A-------------------------------CCTGCAACATTCACAT--------GCCACTTGC---------------------------------A--T------C------------------------------------------------------TTGCAATCCATACCATACCCCCGTAGCCACTAAGG-------------------ATC-----------ATCCTCA------------------CAATCTCTC-------GCC--CGCTT-TACGT-ATTTATATATTCGCCAGCTTATGCCCATT---TTG-T-GT-TATTTGTCCAA---CAA-----------------TCAA-------ACACCTACACC---CACCA---------------------C-A----CACATCCSizeHit CountTotal NormTotal
No Reads
droRho1
AGGCTAAGTGCACCCAAAACGGGCTTCAACACCGCCGCCTACAACACCATGTAAAGG-CC--ACGCTCTGCTTA--T-------------------------------CCTGCAACGTTCACAT--------GCCACTTGC---------------------------------A--A------C------------------------------------------------------TTGCAATCCATACC-----CCCGTAGCCACTAAGG-------------------ATC-----------ATCCT--------------------CATCCTCTC-------GCC--CGCTT-TACGT-ATTTATATATTCGACCGCTT-CGCCCATT---TTG-T-GT-TTTTTGTCCAA---CAA-----------------TCGA-------ACACCTT-------CATCG---------------------CCA----CCCACCASizeHit CountTotal NormTotal
No Reads
droFic1
AGGCTAAGTGCTCCCAAAACAGGCTTCAATACCGCCGCCTACAACACCATGTAAAGG-CC--ACGCTCTGCTTA--ACAAC------ATCTAAAC-------T-GCAACCTGCAACATTCACAT--------GCCACTTGC---------------------------------A--A------C------------------------------------------------------TTGCAATCCATACA------ACGTAGCTTATAAGGA------------------ATC-----------GTCCT--------------------CATCCTCAC-------GCC--CGCTT-TACGT-ATTTATATATTTGCCCGCTATCACCCATT---TTG-T-GTGTTTTTGTCCAA---CAA-----------------TCGA-------ACACCTC-------CACCC----------------------------ACCATCCSizeHit CountTotal NormTotal
No Reads
droKik1
AGGCTAAGTGCCCCCAAAACGGGCTTCAACACCGCAGCCTACAACACCATGTAAAGG-CA--ACGCTCTGCTTA--AGAAC------ATCCCAAC-------T-GCAAC--------------------------------------------------------------------A------C------------------------------------------------------CAGCAATCCATACC-----CCATTAGCCACTAAGGAAACGTCGTCATCGTCCTCATC-----------GTCCC--------------------CATCCCTTC-------GCC--CGCTT-TACGT-ATTTATATATTTGCCTGCTTTTGTCCATT---TTG-T-GT-T-TCTGTCCAA---CAA-----------------TTAA-------ACACCAT-------CATCA----------------------------CTAATCASizeHit CountTotal NormTotal
No Reads
droAna3
AGGCTAAGTGCTCCGAAAACGGGCTTCAACACAGCCGCCTACAACACCATGTAAAGCTCC--AAGATCTGCTTA--ACTGC----------------------------CTGAAA------CAT--------GCAACTTTC---------------------------------A--A------C-------------------------------------------------CATAAGGGCAATCCATAA---------------------G-------------------ATC-----------GCTCG----------CTC-------CATCCAACC-------GCCCTCGCTT-TACGT-ATTTATATGTTTTCCTGCTTTCGCCCATTTGTTTG-T-GCTTTTTTGTCCAA---CAA-----------------TCCA-------ACCACAC-------CACCC---------------------A-A----CCCCACCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................................................................................................................................................................................................................................................AATCCATAA---------------------G-------------------ATC-----------GCTCG----------CTC-------CATC.........................................................................................................................................................................2511.001010000
...................................................................................................................................................................................................................................................AATCCATAA---------------------G-------------------ATC-----------GCTCG----------CTC-------CATCC........................................................................................................................................................................2611.001000010
...................................................................................................................................................................................................................................................AATCCATAA---------------------G-------------------ATC-----------GCTCG----------CC.....................................................................................................................................................................................2011.001010000
...CTAAGTGCTCCGAAAACGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
......................................................................................................................................AACTTTC---------------------------------A--A------C-------------------------------------------------CATAAGGGCA.....................................................................................................................................................................................................................................................................2011.001100000
droBip1
AGGCTAAGTGCTCCCAAAACGGGCTTCAACACGGCCGCCTACAACACCATGTAAAGCTCC--AACATCTGCTTA--TCTGC------CTGAT----------------------------ACAT--------GCAACTTTC---------------------------------A--A------C------------------------------------------------------GTGCAATTCATAA---------------------G-------------------ATC-----------GC-TC--------------------CATCCAACC-------GCCCTCGCTT-TACGT-GTTTATATGTTTTCCAGCTTTCGCCCATTTGTTTG-T-GTTTTTTTGTCCAA---CAA-----------------TCCAATGTCCAACACCAC-------CACCTCCCACCACAGACCACAGGCCAC-A----TACAGCCSizeHit CountTotal NormTotal
No Reads
dp5
AGGCTAAGTACACCAAAGCCAGGCTTCAACACGGCTGCATACAATACCATGTAACGA--A--ATGCTATTTCTA--CTTACTCATTA----------------AACAAGCTCCAACT---------------TCCACCTCC---------------------------------A--T------CTCA---CAACCAC----------------------A------------TCA-----------------------TAATAGCCACTAAGG-------------------ATC-----------GCCCG--------------------AG---CATT-------GTC--TGCTT-TTCGT-ATTTATATTTCCCCCCGCTTTTGTCTATG---TTA-CCGTC------------------------------------AC-------ATC-----------CC-CT---------------------C-A----TAATGACSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....................................................................................................................................................................................................................................................................................................................................................................................................TCTATG---TTA-CCGTC------------------------------------AC-------ATC-----------CC-CT---------------------C-A----.......2511.0010100000000
...........................................ATACCATGTAACGA--A--ATGCTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
..............................................................................................................TCCAACT---------------TCCACCTCC---------------------------------A--T------CTC..............................................................................................................................................................................................................................................................................................................................2111.0010100000000
......................................................................................................................................................................................................................................................................TAGCCACTAAGG-------------------ATC-----------GCCCG--------------------.............................................................................................................................................................................2011.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................TTTTGTCTATG---TTA-CCGTC------------------------------------AC-------......................................................2111.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................TTCGT-ATTTATATTTCCCCCCGCTT........................................................................................................................2511.0010100000000
........................................................................................................................................................................................................................................................................GCCACTAAGG-------------------ATC-----------GCCCG--------------------AG---C.......................................................................................................................................................................2111.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................ATG---TTA-CCGTC------------------------------------AC-------ATC-----------CC-CT---------------------C-............2111.0010100000000
droPer2
AGGCTAAGTACACCAAAGCCAGGCTTCAACACGGCTGCATACAATACCATGTAACGA--A--ATGCTATTTCTA--CTTACTCATTA----------------AACAAGCTCCAACT---------------TCCACCTCC---------------------------------A--T------CTCA---CACCCAC----------------------A------------TCA-----------------------TAATAGCCACTAAGG-------------------ATC-----------GCCCG--------------------AG---CATT-------GTC--TGCTT-TTCGT-ATTTATATTTCCCCCCGCTTTTGTCTATG---TTA-CCGTC------------------------------------AC-------ATC-----------CC-CT---------------------C-A----TAATGACSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................CAGGCTTCAACACGGCTGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
..................................................................................CATTA----------------AACAAGCTCCAACT---------------TCCACC...............................................................................................................................................................................................................................................................................................................................................................................2511.001010000
.............................................................................................................................................................................................................................................................................................................................................................................................GCTTTTGTCTATG---TTA-CCGTC------------------------------------...............................................................2111.001010000
droWil2
AGGCTAAGTTTACCAAAGCAAAGCTTCAACACCGCTGCTTACAATACCATGTAACGA--A--ATGCTCCAACTA--TCTAT----------------------------------CAATCATATATCCCATTTCCATATCC---------------------------------A--T------ATCCTCTCGATCCC----------------------ATTTTTTGTTTTTTCA-----------------------TAATAGTCCCTAAGAC------------------ATT-----------TTTCACA------------------C-ATTTGTA-------GTC--TGCTTTTTCAT-ATTTATATATATATATATTT-TGT--------TTGCT-GT-TTTTTTCCCCATATCAA-----------------CCGA-------CCATCAC-------CCCTT-----------------------T----TTACCCCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................................................................................................................................................................................................................................................................................................T-----------TTTCACA------------------C-ATTTGTA-------GTC--TG......................................................................................................................................................2111.00100001
droVir3
AGGCTAAGTTTACCAAAGCAAAGCTTCAACACCGCTGCATACAATACCATGTAAAGG--A--ATGCTCTTTCTT--ACTAC------ACACAATT-------------------------------------TCTCTTTCTCTCTCTATTACTCTCTCTCGCGGACACACAGAC---ACACACACACA---T----ACAGACACCCATATTGAC-------------------------ACAGAACTCATAA-------AAATAGTAACTAAGCA------------------GTCCT--AAAGCT-ATTATTATTTTTGCTTTTCAGCTCGAC---ACTTGCCTATTATT--TGTAT-TAATT-ATATGTATTTTT----GCTTTTATTCACT-G-TTC-ACGTT-----GCGTTA---CATTTGTGTCTCTCTCGCCGACGC-------GCCTCCC-------CAC------------------------------CCCATTCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................................................................................................................................................................................................................................................................................................................TTTTGCTTTTCAGCTCGAC---ACTTGC..................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................T----ACAGACACCCATATTGAC-------------------------ACAGAACTCATAA-------AAATAGTAACT...........................................................................................................................................................................................................................................4311.001000000000000000000000000000000000000000000000000000000001000000
......................................................................................................................................................................................................................................................................................................................................AGCTCGAC---ACTTGCCTATTAT...........................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................CAGCTCGAC---ACTTGCCTATTA............................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................CTCTCTCTCGCGGACACACA..............................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000010000000000000000000000000000000000
.......................................................................................................................................................................................ACACA---T----ACAGACACCCATATTGAC-------------------------..........................................................................................................................................................................................................................................................................2411.001000100000000000000000000000000000000000000000000000000000000000
.....AAGTTTACCAAAGCAAAGCTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000001000000000000000000000000000
..............................................................ATGCTCTTTCTT--ACTAC------ACACAATT-------------------------------------TCT..................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................CATTTGTGTCTCTCTCGCCGACGC-------GCC...................................................2711.001010000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................ACACCCATATTGAC-------------------------ACAGAACTCATA..............................................................................................................................................................................................................................................................2611.001000000000000000000000000000000100000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................TTA---CATTTGTGTCTCTCTCGCCGA................................................................2411.001000000000000000000000000000000000000000000000000000000000000010
...............................................................................................................................................................................................................TATTGAC-------------------------ACAGAACTCATAA-------AAATAG................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000001000000000000000000000000000
........................................................................................................................................................................ACAGAC---ACACACACACA---T----ACAGAC...............................................................................................................................................................................................................................................................................................................2450.201010000000000000000000000000000000000000000000000000000000000000
droMoj3
AGGCTAAGTTTACCAAAGCAAAGCTTCAACACCGCTGCATACAATACCATGTAAAGG--A--ATGATCTTTCTT--ACTA-----------------------GAC------------------------------------------------------------ACACATAC---ACACACACTCA---GTCTCACAAAAAC--ACGTCTACACAAAAC------------------TCGTAATAATAACT------AAGCAGGC-----------------------------CTATAAAGCACTTCATTATTTTTGCTTTTCAGCTCGAC---ACTTGCCTATTAC----TCTG-TATTTATTTTATGTATT-TTTCGCTTTTATTCATC-A-TTG-TTGTTACGTTGCCTTA---CATA----------------TGTC-------TCTCTCT-------CACCG---------------------C-A----TCCCGCCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...........................................................................................................................................................................................................................................................................................................................................GAC---ACTTGCCTATTAC----TCTG-..................................................................................................................................................2011.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................TATTCATC-A-TTG-TTGTTACGT...............................................................................................2111.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................ATC-A-TTG-TTGTTACGTTGCC...........................................................................................2011.001000010
.....................................CATACAATACCATGTAAAGG--A--ATGAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
.....................................................................................................................................................................................................................................................................................................................................................................................................................TACGTTGCCTTA---CATA----------------TGTC-------TC....................................................2211.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCCTTA---CATA----------------TGTC-------TCT...................................................2011.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................TC-------TCTCTCT-------CACCG---------------------C-A----TCCCG..2111.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................TTCATC-A-TTG-TTGTTACGTTG.............................................................................................2111.001100000
droGri2
AGGCTAAGTTTACCAAAGCAAAGCTTCAACACCGCTGCATACAATACCATGTAAAGG-AA--ATGCTCTTTCTATCTTTACTTACTA----------------CACCAAC--------------------------------------------------------ACACATACAACACACACACTCA---CACTCAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 11:10 AM