ID:

dsi_13397

 Coordinate:

2r:3451460-3451609 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-7.9 -7.7 -7.7

Flybase annnotation

exon [2r_3451278_3451459_-]; CDS [2r_3451278_3451459_-]; intron [2r_3451460_3451883_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GCACAACGCTATCGATCAGCTCAGCTAGTAGGCCCCTTAGCTGTTCAAGATCATGGTTTATCTTACCCCACGCCGGCGGAGTCCGAGTGCCCTAATAGATCGATAAGAAAACTAGTTGAAATCAATTCAAACTCAACATTGGCCAGATAAGGCTCCTCTGCTCAATCAGCGGCTAATCTACCTTTTGGCACGCTCCACAGGTTCATTATCCCCTATCTGTACCTTCCCGATTACATGAAGCAATACAAGT
**************************************************...((((((((.......(((..(((......))).))).....))))))))...........***************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 O002
Head
 O001
Testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
.............................................................................................AATAGATCGATAAGAAAACT......................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0
............................................................................................TAATAGATCGATAGGAAAACT......................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................................................................................................GTTCATTATCCCCTATCTGT.............................. 20 0 1 1.00 1 0 0 1 0 0 0 0
............................................................................................................................................................................................................................ACCTTCCCGATTACATGAAGCAATAC.... 26 0 1 1.00 1 0 0 0 1 0 0 0
.........................TAGTAGGCCCCTTAGCTGTTC............................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0
..................................................TCATGGTTTATCTTACCCCAC................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0
.........TATCGATCAGCTCAGCTAGT............................................................................................................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0
...................................................................................................................................................................................................................CCTATCTGTACCTTCCCGATTA................. 22 0 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................................................................................................GTTCATTATCCCCTATCTGTACC........................... 23 0 1 1.00 1 1 0 0 0 0 0 0
.............GATCAGCTCAGTTGGTAG........................................................................................................................................................................................................................... 18 2 6 0.17 1 0 1 0 0 0 0 0
..........................................................................................................................................TTGGCCAGGTAAGGATACTC............................................................................................ 20 3 6 0.17 1 1 0 0 0 0 0 0
...........................................................................GCGGAGTCCGAGTGT................................................................................................................................................................ 15 1 8 0.13 1 0 0 0 0 0 0 1
...............................................................TACCCTACGCCGGCAG........................................................................................................................................................................... 16 2 20 0.10 2 0 0 0 0 0 2 0
..........................................................................................CCTAATAGATTGCTAAG............................................................................................................................................... 17 2 15 0.07 1 0 0 0 0 0 1 0
............CGCTTAGCTCAGCTGGTAG........................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 1 0
....................TCAGCTAGGAGGCACC...................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 1 0

Anti-sense strand reads

CGTGTTGCGATAGCTAGTCGAGTCGATCATCCGGGGAATCGACAAGTTCTAGTACCAAATAGAATGGGGTGCGGCCGCCTCAGGCTCACGGGATTATCTAGCTATTCTTTTGATCAACTTTAGTTAAGTTTGAGTTGTAACCGGTCTATTCCGAGGAGACGAGTTAGTCGCCGATTAGATGGAAAACCGTGCGAGGTGTCCAAGTAATAGGGGATAGACATGGAAGGGCTAATGTACTTCGTTATGTTCA
*****************************************************************************************************************************************...((((((((.......(((..(((......))).))).....))))))))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 M023
head
 M024
male body		 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M025
embryo
 SRR902008
ovaries
....................................................................................CTCACGGGATTATCTAGCTAT................................................................................................................................................. 21 0 1 8.00 8 0 6 2 0 0 0 0 0 0 0
............................................................................................................................................................AGACGAGTTAGTCCACGATTAGT....................................................................... 23 3 1 6.00 6 6 0 0 0 0 0 0 0 0 0
.......................................................................CGGCCGCCTCAGGAT.................................................................................................................................................................... 15 1 8 4.38 35 26 0 0 0 2 0 7 0 0 0
.............................TCCGGGGAATCGACAAGTTCT........................................................................................................................................................................................................ 21 0 1 4.00 4 0 4 0 0 0 0 0 0 0 0
.............................................................................................................................................................GACGAGTTAGTCCACGATTAGT....................................................................... 22 3 1 3.00 3 3 0 0 0 0 0 0 0 0 0
......................................................................ACGGCCGCCTCAGGAT.................................................................................................................................................................... 16 2 20 2.00 40 29 0 0 0 1 0 10 0 0 0
...............................................................................................................................................................................................GGAGTTGTCCAAGTAATAGGAG..................................... 22 3 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TGCGAGGTGTCCAAGTAATAG........................................ 21 0 1 2.00 2 0 0 0 0 1 1 0 0 0 0
............................................................................................................................................................AGACGAGTTAGTCCACGATTAG........................................................................ 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................TGCGGCCGCCTCAGGCTCACGG............................................................................................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................GAGTTAGTCGCCGATTAGATG..................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
................................................................................CAGGCTCACGGGATTATCTA...................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.................................GGGAATCGACAAGTTCTAG...................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...................................................................................CCTCACGGGATTATCTAGCTATT................................................................................................................................................ 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..............................CCGGGGAATCGACAAGTTCTA....................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................GGGCTAATGTACTTCGTTATG.... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..............................CCGGGGAATCGACAAGTTCT........................................................................................................................................................................................................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..............................CCGGGGAATCGACAAGTTTTA....................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0
......................................TCGACAAGTTCTAGTACCAAA............................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...............................CGGGGAATCGACAAGTTCTAG...................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...................................................................GGTGCGGCCGCCTCAGGCTCA.................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................CGTGCGAGGTGTCCAAGTAA........................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
....................................................................TTGCGGCCGCCTCAGGCTCACG................................................................................................................................................................ 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.....................................................................TGCGGCCGCCTCAGGCTCACG................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.......CGATAGCTAGTCGAGTCGATC.............................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
........................................................................GGCCGCCTCAGGCTCACGGGA............................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
....................................................................................CTCACGGGATTATCTAGCTA.................................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
......................................GCGACAAGTTCTAGTACCAAA............................................................................................................................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................TAACAGGTCTATTACGAG............................................................................................... 18 2 4 0.50 2 0 0 0 0 0 0 0 0 2 0
..........................................................................................................................................................................................CCGTGTTAGGTGTCCAAG.............................................. 18 2 5 0.40 2 0 2 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................CAAGTGATAGGGGGTAGACGT............................. 21 3 3 0.33 1 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................ACAAGGTGTCCAAGTAGTAGG....................................... 21 3 4 0.25 1 0 0 0 0 0 0 0 1 0 0
..................................................................................................................................................................................................GTTGTCCAAGTAATAGGT...................................... 18 2 8 0.25 2 2 0 0 0 0 0 0 0 0 0
.......CGGTAGCTAGCCAAGTCGATC.............................................................................................................................................................................................................................. 21 3 5 0.20 1 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................ACCGCGCCAGCTGTCCAAG.............................................. 19 3 6 0.17 1 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................GGGAGTTGTCCAAGTAATAGT....................................... 21 3 8 0.13 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................TATTCCGAGCAGAAGAG....................................................................................... 17 2 9 0.11 1 0 0 0 0 0 0 0 1 0 0
...........................................................................................................................TCAAGTATTAGTTGTAACCG........................................................................................................... 20 3 19 0.11 2 0 2 0 0 0 0 0 0 0 0
..................................................................................................TAGCTATTCTTTCGAT........................................................................................................................................ 16 1 10 0.10 1 0 0 0 0 0 0 0 1 0 0
.......................................................................................................................................................................TCGCCCATTAGATCGAAAT................................................................ 19 3 17 0.06 1 0 0 0 0 0 0 0 1 0 0
..............................................................................................................................................................................................................ATAGGGTATAGACAT............................. 15 1 17 0.06 1 0 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................................GCCGATTAGATCGAAAT................................................................ 17 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0
............................ATCCCGGGAACCGACA.............................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0
......................................................................................................................................................................................................................CAGACATGGAAGGGTT.................... 16 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0
................................................................................AAGGCTCACGGGATTACTT....................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:3451410-3451659 - dsi_13397 GCAC----------------AACGCTATCGATCAGC-TCAGCTAGTAGGCC-------CCTT---AGC--T---------------------------------------------------------------------------------------------------------GTTCAAGATCAT-GGTTTATCTTACCCCACGCCGGC-GGAG-TCCGAGTGCCCTAA------TAGATCGATAAGAAAACT----AGT--------TGAAATCAATTCAAA-----CT---CAACATTGGCCAGATAA-------GG-CTCCTCTGC-TCAATC----------AGCGGCTAATCTAC-C-TTTTGGCACGCTCCACAGGTTCATTATCCCCTATCTGTACCTTCCCGATTACATGAAGCAATACAAGT
droSec2 scaffold_1:253334-253584 - GCAC----------------AACGCTATCGATCAGT-TTAGTTAGTAGGCCC------CCTT---AGC--T---------------------------------------------------------------------------------------------------------GTTCAAGATCAT-GGTTTATCTTACCCCACGAACGC-GGAG-TCCGAGAACCCTAA------TGGATCGATAAGAAAACT----AGT--------TGAAATCAATTCAAA-----CT---CAACATTGGCCAGATAA-------GG-CTCCTCTGC-TCAATC----------AGCGGCTAATCTAC-C-TTTTGGCACGCTCCACAGGTTCATTATCCCCTATCTGTACCTTCCCGATTACATGAAGCAATACAAGT
dm3 chr2R:2588827-2589080 - GCAC----------------AACGTTATCGATCAGC-TCAGTTAGTAGGCCC------CCTT---AGC--T---------------------------------------------------------------------------------------------------------GTTCAAGATCAT-GGTTTATCTTACCCCACGACTGC-GGAG-TCCGAGTGCCCTAA------TAGATCGATAAGAAAACT----AGT--------TGAAATCAATGCTAA-----CTCCTCAACATTGACCAGATAA-------GG-CTCCTCTGC-TCAATC----------AGCGGCTAATCTAC-T-TTTTGGCACGCTCCACAGGTTCATTATCCCCTATCTGTACCTTCCCGATTACATGAAGCAATACAAGT
droEre2 scaffold_4929:19956344-19956592 + GCAC----------------AACGCTATCGATCAGC-TCACCTAGTGGGCCA------CCTT---GGC--T---------------------------------------------------------------------------------------------------------GTTCAAGATCCA-GGTTTATCTTACC-CACGCCCGC-AGAG-TCCGAGTGCCCTAT------GGGATCGATAAGAAAACT----AGT--------TGAAATCAATTCAAA-----CT---CAACATTTACCAGATAA-------GG-CTCCCC-GT-TCAATC----------AGCGGCTAATCTAC-C-TTTTGGCACGCTCCACAGGTTCATTATCCCCTACCTGTACCTTCCCGATTACATGAAGCAATACAAGT
droYak3 2L:15332241-15332491 - ACAC----------------AGCGCTATCGATCAGC-ATACGTAGTAGGCCA------CCTT---AGC--T---------------------------------------------------------------------------------------------------------GTTCAAGATCCT-GGTTTATCTTACCCCGGGACCGC-GGCG-TCCGATTGCCTTAT------TTGATCGATAAGAAAACT----AGT--------TGAAATCAATTTAAA-----CT---CAACTTTGCCTAGATAA-------GG-CTCCCCTGT-TCAATC----------AGCATCTAATCTAC-C-TTTTGGCACGCTCCACAGGTTCATTATCCCCTATCTGTACCTTCCCGATTACATGAAGCAATACAAGT
droEug1 scf7180000409462:3459947-3460183 - ACAA----------------TAAGTTATCGAACCGCCTTTGGCAGTAGG-------------------------------------------------------------------------------------------------------------------------------GCTCAAGATCAT-GGTTTATCTAACCCCACGTCCATTAGAT-TTTAAGTGTTCCA-----------TCGATAAGGCAACT----AGT--------TGGAATCAATTCAAA-----CT---CAACCTTGTCCAGATAA-------TA-CTCTCCATT-CTGAAC----------AGTTACTAATCTAT-C-CCTTGGCACGCTCCACAGGTTCATTATACCTTATCTTTACCTACCCGACTACATGAAGCAATATGATT
droBia1 scf7180000302292:3562921-3563160 + GTAA----------------AAAGCTATCGATCAG-------------GCCG------CCGA---AACTGT---------------------------------------------------------------------------------------------------------GCTCAAGATCAT-GGTTTATCTTGACCCATGTGCGC-AGAG-TTCGAGTGTTCCAT------TAGCTCGATAAGGA-ACT----AGT--------TGAAATCAATTCAAA-----CC---CAACCTTGTCCAGATAA-------GG-CTCTGCTCT-CTAACT----------GACGACTAATCTCT-C-CCTTGGCACGCTCCACAGGTTTATTATCCCTTATCTGTACCTACCCGAGTACATGAAGCAATACCACT
droTak1 scf7180000413887:13111-13356 + GTAC----------------AATGTTATCGATCAGT-TTGGCTAGTAGG--------------------------------------------------------------------------------------------------------------------------------CTCAAGATCAGGGGTTTATCTTACCCCATGTGCGC-AGAG-TTTGAGTGCCCCAT------TAGCTCGATAAGGAAACT----AGT--------TGAAATCAATTCAAA-----CT---CAACCTTGTCCAGATAA-------GG-CTCCCCATT-CTAACTTTTGCA----AGCGATTAATCAAC-C-CCTTGGCACGCTCCACAGGTTCATTATCCCTTATCTGTACCTACCCGACTACATGAAGCAATACAAGT
droEle1 scf7180000491217:424135-424371 + GCAC----------------AAAATGATCGATCAGC-ATTGGTAGTAGGCCG------CCAT---ATCAGT---------------------------------------------------------------------------------------------------------GCTCAAGATCAT-GGTTTATCTTAGC-----------------CAAAGTGCTCCAT------TAGCTCGATAAGGA-ACT----AGT--------TGAAATCAATTCAAA-----CT---C-ACCTTGTCCCGATAA-------GA-TTCTCCTCCACCAGCT----------AGCGACTAATCTAC-C-CCTTGGCACGCTCCACAGGTTCATTATCCCTTATCTGTACCTGCCCGACTACATGAAGCAATACGGAT
droRho1 scf7180000766409:476479-476722 - GTAC----------------CTAGTGTCGGATAAGC-TTTGGTAGTAGGCCG------CCGCCGAAACAGT---------------------------------------------------------------------------------------------------------GCTCAAGATCAT-GGTTTATCGTACCCCGTGTGCGC-AGAG-TTGAATTGCTCCAT------TAGCTCGATAAGGAAACT----AGT--------TGAAATCAATTCAAA-----CT---CAACCTTGTCCAGATAA-------GC-CTCTC------------------------ATCTAATCTAACC-CTTTGGCACGCTTCACAGGTTCATTATCCCTTATCTGTACCTGCCCGAATACATGAAGCAGCACAAGT
droFic1 scf7180000453955:712413-712669 + CTAC----------------AACGTTATCGATGGGC-CTTGGCAA-AGGCCG------CCCC---AATAGA---------------------------------------------------------------------------------------------------------GCTCAAGATCAT-GGTTTATCTTACCCCATGTGTGC-TGAG-TTTAAGAGCTCCAT------TAGCTCGATAAGGAAACTACATAGT--------TGAAACCAAATCAAA-----CT---CGACCTTGTCGAGATAA-------GG-CTCTCAATT-CTAACT----------AGCTTTTAATACACCC-CTTTGGCACGCTCCGCAGGTTTATTATCCCATATCTGTACCTTCCCGAGTACATGAAGCAGTACAAGT
droKik1 scf7180000302470:151583-151778 - GTAC----------------AAAATTATCGAT---------------------------------------------------------------------------------------------------------------------------------------------------CAAGATCAT-AACTC----------------GT-AGAGCTGTAAGTGTTTCAT------TGGCTCGATAAGGA-ACT----AGT--------TGAAATCACTTCAAA-----CT---GAAGCAGGACCAGATAA-------AA-TCCAGATCT--------------------ATCTAATCCAC-C-CATTGGCACGCTTCGCAGGTTCATTATCCCCTATCTGTACCTCCCCGATTACATGAAGCAATACGGCT
droAna3 scaffold_13266:18420487-18420666 + TCAC----------------GGC------------------------------------------------------------------------------------------------------------------------------------------------------------CGAGATCAT-GGTTTATCTGACC--GTGTACCC-AGGG-CTTAAGTGCTTTAT------TGGGTCGATAAGGGAACT----GGT--------TCAAAGCGATTC-----------------------CAGATAA-------C-----TG------------------------CTCTAATCTGGCATTGTCCCGCCCCTCCGCAGGTTCATCATACCCTATCTGTACCTTCCCGAGTACATGAAGCAGTACAACT
droBip1 scf7180000396735:1692598-1692796 + GGGA----------------AATACTA---ATTAGA---------------------------------------------------------------------------------------------------------------------------------AGTCGATTCACGGTCGAGATCAT-GGTTTATCGGGGT--GTGTACCC-AGGA-TTTAAGTGGTTTAT------TGGCTCGATAAGGAAACT----GGT--------TGAAAGCGGTTT-----------------------CAGACAA-------GG-GT----------------------------TCTAATCTGC-C-TCTG---CCCCTCCGCAGGTTCATCATACCCTATCTGTACCTTCCCGAGTTTATGAGGCAGTACAACT
dp5 3:853324-853693 - GAAATATGAATGGTGTGATCAACATTATCGATTAGA-TCAGC-GGTGGGCGCGTTTCTGCTC---AGA--TGTTCGGGTAAAGAATAGTACAAGAAACAACATGCATGTCGTGTGCATTGCTACTCGACTCGAGGTTGTTGCTGGACTGGCCTGCCCTCCGCTGTATTCGATG------CATAATCGT-GGTTTACCCTACTCCATAT----------TCAGAGTGCTCCAAATGTAGGATCTCGATAAGGAGACT----GGT--------TTGAATCGATTCAGACCGAACC---AAACCTTTTTCTGATAACGAATAAAGGCACCC------------------------ATCTAATCTCCAC-TCTGGGCACGTTCCGCAGGTTCATTATACCCTATCTGTATCTACCGGACTACATGAAGCAATATAACT
droPer2 scaffold_2:1029253-1029622 - GAAATATGAATGGTGTGATCAACATTATCGATTAGA-TCAGC-GGTGGGCGCGTTTCTGCTC---AGA--TGTTCGGTTAAAGAATAGTACAAGAAACAACATGCATGTCGTGTGCATTGCTACTCGACTCGAGGTTGTTGCTGGACTGGCCTGCCCTCCGCTGTATTCGATG------CATAATCGT-GGTTTACCCTACTCCATAT----------TCAGAGTGCTCCAAATGTAGGATCTCGATAAGGAGACT----GGT--------TTGAATCGATTCAGACCGAACC---AAACCTTTTTCTGATAACGAATAAAGGCACCC------------------------ATCTAATCTCCAC-TCTGGGCACGTTCCGCAGGTTCATTATACCCTATCTGTATCTACCGGACTACATGAAGCAATATAACT
droWil2 scf2_1100000004954:1742991-1743042 + ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGTTCATCATACCATATCTTTATTTGCCCGACTACTTGAAACAATATGATT
droVir3 scaffold_12875:15477288-15477503 - dvi_7110 TCAC----------------A-TGTAACTAAATAGA-TAATAAAGTTAAGCA------CTT---------------------------------------------------------------------------------------------------------------------AAAAGATCGT-AAATTACCTAAAAGGATG-----------------------------------CTGATAAGAAG--T----TGTTCATATTATAAAACCTAAACAAA-----TT---TTTTAACTGACAGTTTA-------GT-TATCTTTGC-AAA--G------AAACATTAAA---------T-AATATAAACATTTTTCAGGTTTATCATACCCTATCTTTATCTGCCCGATTACATGAAGCAATATAACT
droMoj3 scaffold_6496:8322180-8322240 + -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTTTTACAGGTTTATCATACCCTATCTTTATCTGCCCGATTACATGAAGACTTACAACT
droGri2 scaffold_15245:12277805-12277866 - ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACGTCTCGCAGGTTCATCATACCCTATCTTTATCTGCCCGAATATATGAAGCAATATGACT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GCAC----------------AACGCTATCGATCAGC-TCAGCTAGTAGGCC-------CCTT---AGC--T---------------------------------------------------------------------------------------------------------GTTCAAGATCAT-GGTTTATCTTACCCCACGCCGGC-GGAG-TCCGAGTGCCCTAA------TAGATCGATAAGAAAACT----AGT--------TGAAATCAATTCAAA-----CT---CAACATTGGCCAGATAA-------GG-CTCCTCTGC-TCAATC----------AGCGGCTAATCTAC-C-TTTTGGCACGCTCCACAGGTTCATTATCCCCTATCTGTACCTTCCCGATTACATGAAGCAATACAAGTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................................................................................................................................................AA------TAGATCGATAAGAAAACT----..............................................................................................................................................................................2011.00110000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................GTTCATTATCCCCTATCTGT..............................2011.00100000100000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................ACCTTCCCGATTACATGAAGCAATAC....2611.00100001000000000000
..........................................TAGTAGGCC-------CCTT---AGC--T---------------------------------------------------------------------------------------------------------GTTC..............................................................................................................................................................................................................................................................2111.00100000010000000000
........................................................................................................................................................................................TCAT-GGTTTATCTTACCCCAC....................................................................................................................................................................................................................................2111.00100000100000000000
.........................TATCGATCAGC-TCAGCTAGT....................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................CCTATCTGTACCTTCCCGATTA.................2211.00101000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................GTTCATTATCCCCTATCTGTACC...........................2311.00101000000000000000
..................................................................................................................................................................................................................GC-GGAG-TCCGAGTGT...............................................................................................................................................................................................................1580.13100000000100000000
droSec2
GCAC----------------AACGCTATCGATCAGT-TTAGTTAGTAGGCCC------CCTT---AGC--T---------------------------------------------------------------------------------------------------------GTTCAAGATCAT-GGTTTATCTTACCCCACGAACGC-GGAG-TCCGAGAACCCTAA------TGGATCGATAAGAAAACT----AGT--------TGAAATCAATTCAAA-----CT---CAACATTGGCCAGATAA-------GG-CTCCTCTGC-TCAATC----------AGCGGCTAATCTAC-C-TTTTGGCACGCTCCACAGGTTCATTATCCCCTATCTGTACCTTCCCGATTACATGAAGCAATACAAGTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
................................................................................................................................................................................................................ACGC-GGAG-TCCGAGAACCCT............................................................................................................................................................................................................2011.0010100
........................................................................................................................................................................................................................................................................................................................A-------GG-CTCCTCTGC-TCAATC----------AGC..................................................................................2111.0011000
dm3
GCAC----------------AACGTTATCGATCAGC-TCAGTTAGTAGGCCC------CCTT---AGC--T---------------------------------------------------------------------------------------------------------GTTCAAGATCAT-GGTTTATCTTACCCCACGACTGC-GGAG-TCCGAGTGCCCTAA------TAGATCGATAAGAAAACT----AGT--------TGAAATCAATGCTAA-----CTCCTCAACATTGACCAGATAA-------GG-CTCCTCTGC-TCAATC----------AGCGGCTAATCTAC-T-TTTTGGCACGCTCCACAGGTTCATTATCCCCTATCTGTACCTTCCCGATTACATGAAGCAATACAAGTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................TTCCCGATTACATGAAGCAATACAAG.26110.00100000000000000000000000000000000000000000000000000000000000000000000000000000012200000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000200010
...........................TCGATCAGC-TCAGTTAGTAGG.................................................................................................................................................................................................................................................................................................................................................................................................2119.0090000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000000000000000000000000000000000020000000000000000001011000000
...............................................................................................................................................................................................................ACTGC-GGAG-TCCGAGTGCCC.............................................................................................................................................................................................................2016.0060000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................TCCCGATTACATGAAGCAATACAAG.2515.0050000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000
.......................GTTATCGATCAGC-TCAGTTAG.....................................................................................................................................................................................................................................................................................................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000200000010000000000000000010000000000
........................TTATCGATCAGC-TCAGTTAGT....................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000100000000000000000000000100000000000000000000000000000
.....................................................................................................................................................................................................................................TAA------TAGATCGATAAGAAAACT----AGT--------TGA................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................TCTGTACCTTCCCGATTACATGAAGCAA.......2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................TGCCCTAA------TAGATCGATAAGA.......................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................CGAGTGCCCTAA------TAGATCGAT...........................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................ACATTGACCAGATAA-------GG-CTCC...........................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000
...........................................................CTT---AGC--T---------------------------------------------------------------------------------------------------------GTTCAAGATCAT-GG...................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................AA-----CTCCTCAACATTGACC...............................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................ATCGATCAGC-TCAGTTAGTAG..................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................TCCCGATTACATGAAGCAATA.....2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
................................................................................................................................................................................................................................................GATCGATAAGAAAACT----AGT--------...................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................ATCCCCTATCTGTACCTTCCCGATT..................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................CTAA-----CTCCTCAACATTGA.................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................TAATCTAC-T-TTTTGGCACGCTCC......................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
..................................................................................................................................................................................................................................................................................................................................................................................................TCATTATCCCCTATCTGTACC...........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................TAA-------GG-CTCCTCTGC-TCAATC----------AGCGGC...............................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................TATCTGTACCTTCCCGATTACATGA............2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................CCCTATCTGTACCTTCCCGATTACATGAAG..........3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................TAC-T-TTTTGGCACGCTCCACA...................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................CCTCAACATTGACCAGATAA-------G.................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................ACCCCACGACTGC-GGAG-TCC.....................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................GCTAATCTAC-T-TTTTGGCA............................................................1911.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................CTCAACATTGACCAGATAA-------GG-CTCCT..........................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................ACTGC-GGAG-TCCGAGTGCCA.............................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................A------TAGATCGATAAGAAAACT----AGC--------...................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................T-TTTTGGCACGCTCCACAGGT................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................CTCCTCAACATTGACCAGATAA-------GG-CTCC...........................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................TCAATC----------AGCGGCTAATCTAC-T-....................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.................................................................................................................................................................................................................................................................................................................................................................................................................TGTACCTTCCCGATTACATGAAGCAATA.....2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................TT---AGC--T---------------------------------------------------------------------------------------------------------GTTCAAGATCAT-GGT..................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................GTGCCCTAA------TAGATCGATAAG........................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................................................................AAACT----AGT--------TGAAATCAATGCT......................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................ACGACTGC-GGAG-TCCGAGTG................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................CCTTCCCGATTACATGAAGCAATACAAG.2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................CGATTACATGAAGCAATACA...2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................TT---AGC--T---------------------------------------------------------------------------------------------------------GTTCAAGATCAT-GGTT.................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................A------TAGATCGATAAGAAAACT----AGT--------...................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................GTTCATTATCCCCTATCTGTA.............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................TTACCCCACGACTGC-GGAG-TCC.....................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................TCAAGATCAT-GGTTTATCTT...........................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................TTATCCCCTATCTGTACCTTCCCGA....................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................TATCCCCTATCTGTACCTTCCCGATT..................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................TAA-------GG-CTCCTCTGC-TCAA.................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................TATCTGTACCTTCCCGATTACATGAAGC.........2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................TTATCGATCAGC-TCAGTTAGTA...................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................T---------------------------------------------------------------------------------------------------------GTTCAAGATCAT-GGTTTATC.............................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................TATCTGTACCTTCCCGATTACATGAA...........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................TTATCCCCTATCTGTACCTTCCCGAT...................2611.0010000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................TAATCTAC-T-TTTTGGCACGCT........................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................TATCCCCTATCTGTACCTTCCC......................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................TTACATGAAGCAATACAAGT2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................ACTGC-GGAG-TCCGAGTGCCCT............................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................T--------TGAAATCAATGCTAA-----CTCCTA.........................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...C----------------AACGTTATCGATCAGC-TCAG.........................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................TTCATTATCCCCTATCTGTACCTTC........................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................TCATTATCCCCTATCTGTACCTTCCCGA....................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................CCCTAA------TAGATCGATAAGA.......................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...............................................................................................................................................................................................................ACTGC-GGAG-TCCGAGTGCCCTAA------TAGA................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................................................................................................................................................................TTCAAGATCAT-GGTTTATCTTACCC.......................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................TCAGTTAGTAGGCCC------CCTT---AG...............................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................CCTTCCCGATTACATGAAGCA........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................TTCCCGATTACATGAAGCAAT......2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................ATCCCCTATCTGTACCTTCCC......................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................CCGAGTGCCCTAA------TAGATCG.............................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................ACCTTCCCGATTACATGAAGCAATA.....2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................TCATTATCCCCTATCTGTACCTTCCCGAT...................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GCAC----------------AACGCTATCGATCAGC-TCACCTAGTGGGCCA------CCTT---GGC--T---------------------------------------------------------------------------------------------------------GTTCAAGATCCA-GGTTTATCTTACC-CACGCCCGC-AGAG-TCCGAGTGCCCTAT------GGGATCGATAAGAAAACT----AGT--------TGAAATCAATTCAAA-----CT---CAACATTTACCAGATAA-------GG-CTCCCC-GT-TCAATC----------AGCGGCTAATCTAC-C-TTTTGGCACGCTCCACAGGTTCATTATCCCCTACCTGTACCTTCCCGATTACATGAAGCAATACAAGTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
ACAC----------------AGCGCTATCGATCAGC-ATACGTAGTAGGCCA------CCTT---AGC--T---------------------------------------------------------------------------------------------------------GTTCAAGATCCT-GGTTTATCTTACCCCGGGACCGC-GGCG-TCCGATTGCCTTAT------TTGATCGATAAGAAAACT----AGT--------TGAAATCAATTTAAA-----CT---CAACTTTGCCTAGATAA-------GG-CTCCCCTGT-TCAATC----------AGCATCTAATCTAC-C-TTTTGGCACGCTCCACAGGTTCATTATCCCCTATCTGTACCTTCCCGATTACATGAAGCAATACAAGTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................TCCCGATTACATGAAGCAATACAAG.2511.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................TTCCCGATTACATGAAGCA........1911.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCCGATTACATGAAGCA........2011.00101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................CATTATCCCCTATCTGTACCT..........................2111.00101000000000
droEug1
ACAA----------------TAAGTTATCGAACCGCCTTTGGCAGTAGG-------------------------------------------------------------------------------------------------------------------------------GCTCAAGATCAT-GGTTTATCTAACCCCACGTCCATTAGAT-TTTAAGTGTTCCA-----------TCGATAAGGCAACT----AGT--------TGGAATCAATTCAAA-----CT---CAACCTTGTCCAGATAA-------TA-CTCTCCATT-CTGAAC----------AGTTACTAATCTAT-C-CCTTGGCACGCTCCACAGGTTCATTATACCTTATCTTTACCTACCCGACTACATGAAGCAATATGATTSizeHit CountTotal NormTotal
No Reads
droBia1
GTAA----------------AAAGCTATCGATCAG-------------GCCG------CCGA---AACTGT---------------------------------------------------------------------------------------------------------GCTCAAGATCAT-GGTTTATCTTGACCCATGTGCGC-AGAG-TTCGAGTGTTCCAT------TAGCTCGATAAGGA-ACT----AGT--------TGAAATCAATTCAAA-----CC---CAACCTTGTCCAGATAA-------GG-CTCTGCTCT-CTAACT----------GACGACTAATCTCT-C-CCTTGGCACGCTCCACAGGTTTATTATCCCTTATCTGTACCTACCCGAGTACATGAAGCAATACCACTSizeHit CountTotal NormTotal
No Reads
droTak1
GTAC----------------AATGTTATCGATCAGT-TTGGCTAGTAGG--------------------------------------------------------------------------------------------------------------------------------CTCAAGATCAGGGGTTTATCTTACCCCATGTGCGC-AGAG-TTTGAGTGCCCCAT------TAGCTCGATAAGGAAACT----AGT--------TGAAATCAATTCAAA-----CT---CAACCTTGTCCAGATAA-------GG-CTCCCCATT-CTAACTTTTGCA----AGCGATTAATCAAC-C-CCTTGGCACGCTCCACAGGTTCATTATCCCTTATCTGTACCTACCCGACTACATGAAGCAATACAAGTSizeHit CountTotal NormTotal
No Reads
droEle1
GCAC----------------AAAATGATCGATCAGC-ATTGGTAGTAGGCCG------CCAT---ATCAGT---------------------------------------------------------------------------------------------------------GCTCAAGATCAT-GGTTTATCTTAGC-----------------CAAAGTGCTCCAT------TAGCTCGATAAGGA-ACT----AGT--------TGAAATCAATTCAAA-----CT---C-ACCTTGTCCCGATAA-------GA-TTCTCCTCCACCAGCT----------AGCGACTAATCTAC-C-CCTTGGCACGCTCCACAGGTTCATTATCCCTTATCTGTACCTGCCCGACTACATGAAGCAATACGGATSizeHit CountTotal NormTotal
No Reads
droRho1
GTAC----------------CTAGTGTCGGATAAGC-TTTGGTAGTAGGCCG------CCGCCGAAACAGT---------------------------------------------------------------------------------------------------------GCTCAAGATCAT-GGTTTATCGTACCCCGTGTGCGC-AGAG-TTGAATTGCTCCAT------TAGCTCGATAAGGAAACT----AGT--------TGAAATCAATTCAAA-----CT---CAACCTTGTCCAGATAA-------GC-CTCTC------------------------ATCTAATCTAACC-CTTTGGCACGCTTCACAGGTTCATTATCCCTTATCTGTACCTGCCCGAATACATGAAGCAGCACAAGTSizeHit CountTotal NormTotal
No Reads
droFic1
CTAC----------------AACGTTATCGATGGGC-CTTGGCAA-AGGCCG------CCCC---AATAGA---------------------------------------------------------------------------------------------------------GCTCAAGATCAT-GGTTTATCTTACCCCATGTGTGC-TGAG-TTTAAGAGCTCCAT------TAGCTCGATAAGGAAACTACATAGT--------TGAAACCAAATCAAA-----CT---CGACCTTGTCGAGATAA-------GG-CTCTCAATT-CTAACT----------AGCTTTTAATACACCC-CTTTGGCACGCTCCGCAGGTTTATTATCCCATATCTGTACCTTCCCGAGTACATGAAGCAGTACAAGTSizeHit CountTotal NormTotal
No Reads
droKik1
GTAC----------------AAAATTATCGAT---------------------------------------------------------------------------------------------------------------------------------------------------CAAGATCAT-AACTC----------------GT-AGAGCTGTAAGTGTTTCAT------TGGCTCGATAAGGA-ACT----AGT--------TGAAATCACTTCAAA-----CT---GAAGCAGGACCAGATAA-------AA-TCCAGATCT--------------------ATCTAATCCAC-C-CATTGGCACGCTTCGCAGGTTCATTATCCCCTATCTGTACCTCCCCGATTACATGAAGCAATACGGCTSizeHit CountTotal NormTotal
No Reads
droAna3
TCAC----------------GGC------------------------------------------------------------------------------------------------------------------------------------------------------------CGAGATCAT-GGTTTATCTGACC--GTGTACCC-AGGG-CTTAAGTGCTTTAT------TGGGTCGATAAGGGAACT----GGT--------TCAAAGCGATTC-----------------------CAGATAA-------C-----TG------------------------CTCTAATCTGGCATTGTCCCGCCCCTCCGCAGGTTCATCATACCCTATCTGTACCTTCCCGAGTACATGAAGCAGTACAACTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................................................................................................................................................................................CGAGATCAT-GGTTTATCT............................................................................................................................................................................................................................................1811.001010000
......................................................................................................................................................................................................................................................................................................................................................................................................CATACCCTATCTGTACCTTCCCGA....................2411.001100000
...........................................................................................................................................................................................................................................................................................................................................................................CATTGTCCCGCCCCTCCGCAG..................................................2111.001100000
..................................................................................................................................................................................................................................................................................................................................................................CTAATCTGGCATTGTCCCGCC...........................................................2111.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................CATCATACCCTATCTGTACCT..........................2111.001100000
.......................................................................................................................................................................................................................................................................................................................................G------------------------CTCTAATCTGGCATTGTT................................................................1911.001000100
droBip1
GGGA----------------AATACTA---ATTAGA---------------------------------------------------------------------------------------------------------------------------------AGTCGATTCACGGTCGAGATCAT-GGTTTATCGGGGT--GTGTACCC-AGGA-TTTAAGTGGTTTAT------TGGCTCGATAAGGAAACT----GGT--------TGAAAGCGGTTT-----------------------CAGACAA-------GG-GT----------------------------TCTAATCTGC-C-TCTG---CCCCTCCGCAGGTTCATCATACCCTATCTGTACCTTCCCGAGTTTATGAGGCAGTACAACTSizeHit CountTotal NormTotal
No Reads
dp5
GAAATATGAATGGTGTGATCAACATTATCGATTAGA-TCAGC-GGTGGGCGCGTTTCTGCTC---AGA--TGTTCGGGTAAAGAATAGTACAAGAAACAACATGCATGTCGTGTGCATTGCTACTCGACTCGAGGTTGTTGCTGGACTGGCCTGCCCTCCGCTGTATTCGATG------CATAATCGT-GGTTTACCCTACTCCATAT----------TCAGAGTGCTCCAAATGTAGGATCTCGATAAGGAGACT----GGT--------TTGAATCGATTCAGACCGAACC---AAACCTTTTTCTGATAACGAATAAAGGCACCC------------------------ATCTAATCTCCAC-TCTGGGCACGTTCCGCAGGTTCATTATACCCTATCTGTATCTACCGGACTACATGAAGCAATATAACTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................................................................................................................................................................................................................................................................................................................................................ATCTAATCTCCAC-TCTGGGCA............................................................2112.0020200000000
....................................................................................................................ATTGCTACTCGACTCGAGGTT.........................................................................................................................................................................................................................................................................................................2112.0020200000000
....................................................................................................................................................................................................................................................................................................................................................................................................................ATCTACCGGACTACATGAAGCA........2211.0010100000000
.......................................................TCTGCTC---AGA--TGTTCGGGTA..................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................CTAATCTCCAC-TCTGGGCACG..........................................................2111.0010100000000
........................................................................................TACAAGAAACAACATGCATGT.....................................................................................................................................................................................................................................................................................................................................2111.0010000001000
....................................................................................................................................................................................................................................................................................................................................................................................................................ATCTACCGGACTACATGAAGC.........2111.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................GTTCATTATACCCTATCTG...............................1911.0010010000000
................................................................................................................................................................................................................................TGCTCCAAATGTAGGATCTCG.............................................................................................................................................................................................2111.0010100000000
.................................................................................................................................................................................................................................................................................................................TCTGATAACGAATAAAGGCAC............................................................................................................2111.0010100000000
...............................................................................................................................ACTCGAGGTTGTTGCTGGAC...............................................................................................................................................................................................................................................................................................2011.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................ATACCCTATCTGTATCTACCGGA....................2311.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................TGTATCTACCGGACTACATG.............2011.0010100000000
.........................................................................................................................................................................................................................................................GGAGACT----GGT--------TTGAATCGATT........................................................................................................................................................2111.0010100000000
..................................................................................GAATAGTACAAGAAACAACAT...........................................................................................................................................................................................................................................................................................................................................2111.0010100000000
....................................................................................................................................AGGTTGTTGCTGGACTGGT...........................................................................................................................................................................................................................................................................................1911.0010100000000
................................................................................................................................CTCGAGGTTGTTGCTGGACTG.............................................................................................................................................................................................................................................................................................2111.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................TCTACCGGACTACATGAAGCAATATA...2611.0010000100000
......................................................................................................................................GTTGTTGCTGGACTGGCCTGC.......................................................................................................................................................................................................................................................................................2111.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................GTATCTACCGGACTACATGAAGC.........2311.0010000010000
droPer2
GAAATATGAATGGTGTGATCAACATTATCGATTAGA-TCAGC-GGTGGGCGCGTTTCTGCTC---AGA--TGTTCGGTTAAAGAATAGTACAAGAAACAACATGCATGTCGTGTGCATTGCTACTCGACTCGAGGTTGTTGCTGGACTGGCCTGCCCTCCGCTGTATTCGATG------CATAATCGT-GGTTTACCCTACTCCATAT----------TCAGAGTGCTCCAAATGTAGGATCTCGATAAGGAGACT----GGT--------TTGAATCGATTCAGACCGAACC---AAACCTTTTTCTGATAACGAATAAAGGCACCC------------------------ATCTAATCTCCAC-TCTGGGCACGTTCCGCAGGTTCATTATACCCTATCTGTATCTACCGGACTACATGAAGCAATATAACTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................................CTACCGGACTACATGAAGC.........1914.004400000
.......................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGACTACATGAAGCA........1913.003201000
....................................................................................................................................................................................................................................................................................................................................................................................................................ATCTACCGGACTACATGAAGC.........2113.003300000
....................................................................................................................................................................................................................................................................................................................................................................................................................ATCTACCGGACTACATGAAGCA........2212.002200000
.........................................................................................................................................................................................................................................................................................................................................................................CCAC-TCTGGGCACGTTCCGC....................................................2011.001010000
.........................................................................................................................................................................................................................................................................................................................................................................................................ACCCTATCTGTATCTACCGGACTACATG.............2811.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................ATCTACCGGACTACATGAA...........1911.001100000
...................................................................................................................................................................................................................................................................................................................................................................TAATCTCCAC-TCTGGGCACGT.........................................................2111.001010000
...............................................................................................................................ACTCGAGGTTGTTGCTGGAC...............................................................................................................................................................................................................................................................................................2011.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................ACCGGACTACATGAAGCAATA.....2111.001100000
.................................................CGCGTTTCTGCTC---AGA--TGTTCGG.....................................................................................................................................................................................................................................................................................................................................................................2311.001001000
..........................................................................................................................................................................................................................................................................................................................................................................................................CCCTATCTGTATCTACCGGA....................2011.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................ACCCTATCTGTATCTACCGGACTACATGA............2911.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................TGTATCTACCGGACTACATGAAGC.........2411.001010000
.........................................................................................................................................................................................................................................TGTAGGATCTCGATAAGGAGA....................................................................................................................................................................................2111.001000001
droWil2
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGTTCATCATACCATATCTTTATTTGCCCGACTACTTGAAACAATATGATTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........................................................................................................................................................................................................................................................................................................................................................................................................TACCATATCTTTATTTGCCCGACTACT...............2713.00303000
.....................................................................................................................................................................................................................................................................................................................................................................................................TCATACCATATCTTTATTTGCCCGAC...................2612.00202000
................................................................................................................................................................................................................................................................................................................................................................................................GTTCATCATACCATATCTTT..............................2011.00100010
droVir3
TCAC----------------A-TGTAACTAAATAGA-TAATAAAGTTAAGCA------CTT---------------------------------------------------------------------------------------------------------------------AAAAGATCGT-AAATTACCTAAAAGGATG-----------------------------------CTGATAAGAAG--T----TGTTCATATTATAAAACCTAAACAAA-----TT---TTTTAACTGACAGTTTA-------GT-TATCTTTGC-AAA--G------AAACATTAAA---------T-AATATAAACATTTTTCAGGTTTATCATACCCTATCTTTATCTGCCCGATTACATGAAGCAATATAACTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................CTTTATCTGCCCGATTACAT..............2013.003001000000000000000000000000000001001000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................TTTATCTGCCCGATTACATGAAGC.........2411.001000000000000000001000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................CTTTATCTGCCCGATTACATGAAG..........2411.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................TCTTTATCTGCCCGATTACATGAAG..........2511.001000000000000000000000000000001000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCCGATTACATGAAGC.........1911.001000000000000000000000000000000001000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................CTTTATCTGCCCGATTACATGAAGCAAT......2811.001000000000000000001000000000000000000000000000000000000000000000
..................................................................................................................................................................................AAAAGATCGT-AAATTACCTAAA.........................................................................................................................................................................................................................................2211.001000000000000000000100000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................CTTTATCTGCCCGATTACATGAAGCA........2611.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTTTTACAGGTTTATCATACCCTATCTTTATCTGCCCGATTACATGAAGACTTACAACTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGCCCGATTACATGAAGACT.......2311.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................TTTATCTGCCCGATTACATGAAGAC........2511.001100000
droGri2
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACGTCTCGCAGGTTCATCATACCCTATCTTTATCTGCCCGAATATATGAAGCAATATGACTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 10:57 AM