ID:

dsi_1335

 Coordinate:

2l:7227436-7227899 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-32.7 -32.2 -32.2

Flybase annnotation

CDS [2l_7227889_7228132_-]; three_prime_UTR [2l_7226761_7227888_-]; exon [2l_7226761_7228132_-]

No Repeatable elements found

Sense Strand Reads

####################################################################################################################################################################################################################################################################################################################################################################################################################################################################################################################################################################################
CAACAGCATGGCTTTGTTCAATGCGATCAGTGGCGCCTCCCATAACTCAAGTACTGCTTAAGTCCAACAAAATCATAATAAGATATCAAAATTCTGAAACTCAGTCACCCACACGCACGGCTAACCAGAAACCAAACCGAATGTTGAAGTATTCAAATAACACGAGCCCGATACGTAGGCGTAGAGATTGTAATGCGTTAGCGTAACCACAACGTAGTCGTAACATAGGCTCTCTTGGTGTTCCTTTGTTTGAAGTTGTCGTTGATTTTGAAATTGTCTTGCGGCAGGTAAAGCTCGATTTTGGGCTTAATGGTTTGCGCCTCGGCTGATGGAATCCGCATGTGACTAACACCACAAAAAACATAAACAATCCAAATTTGGTGGCTTTTAATCCGAACCGAAACTAACCGTAAGCGCTTTCTAACTAAATTCGGCTAATCTAACTAAATGTTCTGTGACCCTGCCCATAGCTTTTCCATTTTGTATTAACGAGTTTGTAATTCTCCCTTTTTAGGACCGTATTTTGTTGATCAAAATACCAGCAACAGCACCCACCACCACAGT
**************************************************************************************************************************************************************************************************************************************************************.(((((((.(((.........)))..)))))))...(((((((....)))))))..((((((.((..((((....(((((.((((.((((........))))...........(((.......))))))).)))))..))))..))))))))...*********************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 M024
male body		 SRR618934
dsim w501 ovaries
 M023
head
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
.......................................................................................................................................................................................................................................................................................................................................................................................................TCCGAACCGAAACTAACC........................................................................................................................................................... 18 0 1 3.00 3 3 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................GTTGTCGTTGATTTTGAAA................................................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................................................ATCAAAATTCTGAAACTCAGTCACCCACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGGACCGTATTTTGTTGATCAAAA............................ 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................................................................................GGTGTTCCTTTGGTTGAAGTTGTCGT.............................................................................................................................................................................................................................................................................................................. 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................TCCTTTGTTTGAAGTTGTCGTTGAT.......................................................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..........................................................................................................................AACCAGAAACCAAACCGAATGTT................................................................................................................................................................................................................................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................................................................TCCTTTGTTTGAAGTTGTCGTTGATTT........................................................................................................................................................................................................................................................................................................ 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................TTGAAGTTGTCGTTGATTTTGAAATT................................................................................................................................................................................................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0
............................................................................................TCTGAAACTCAGTCACCCACACGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAATGTTCTGTGACCCTGC.................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0
............................................................................................................................................................................................................................................GGTGTTCCTTTGTTTGAAGTTGTCGT.............................................................................................................................................................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAGGACCGTATTTTGTTGATCAAAA............................ 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................CATAGGCTCTCTTGGTGTT.................................................................................................................................................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0
...................AATGCGATTAGTGGAGCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 18 2 5 0.40 2 0 0 0 0 0 0 2 0 0
.............................................................................................................................................................................CGTAGTCGTAGAGCTTGT..................................................................................................................................................................................................................................................................................................................................................................................... 18 2 3 0.33 1 0 0 0 0 0 0 0 1 0
........................................................................................................................................................................................................................................................................................................................................................................................................................CGTAAGCGCTTTGTAACA.......................................................................................................................................... 18 2 4 0.25 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................AGATATCGTAATGCGTTA............................................................................................................................................................................................................................................................................................................................................................................ 18 2 6 0.17 1 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................................................GTTAGCGTAACCGCACCGA............................................................................................................................................................................................................................................................................................................................................................. 19 3 7 0.14 1 0 0 0 0 0 1 0 0 0
...........................................................AAGTTCAACAATATCATACTA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 21 3 9 0.11 1 0 0 0 0 0 0 0 0 1
.................................................................................................................................AACCAAACGGAATGTT................................................................................................................................................................................................................................................................................................................................................................................................................................... 16 1 9 0.11 1 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................TGGTCTTCCGGCAGGTA.................................................................................................................................................................................................................................................................................. 17 2 10 0.10 1 0 0 0 0 0 1 0 0 0
......................................................................................................................................................................................................................................................................................................................TGGTTAGCGCTTCGGCTGT........................................................................................................................................................................................................................................... 19 3 13 0.08 1 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................................TGACTACCACCAAAAAAAATA......................................................................................................................................................................................................... 21 3 13 0.08 1 0 0 0 0 0 0 0 0 1
.................................................................................................................................................................................................................................................................................TCGTCTTCCGGCAGGTA.................................................................................................................................................................................................................................................................................. 17 2 14 0.07 1 0 0 0 0 0 1 0 0 0
...............................................................................................................................................................................................................................................................................................CTAAAGCTCGTTTTGGGGC.................................................................................................................................................................................................................................................................. 19 3 14 0.07 1 0 0 0 0 1 0 0 0 0
................................................................................................................................................................................ATGCGTAGAGATCGTAAGG................................................................................................................................................................................................................................................................................................................................................................................. 19 3 15 0.07 1 0 0 0 0 0 0 0 0 1
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTGTGTCCCTGCCC.................................................................................................. 17 2 19 0.05 1 0 0 0 0 0 1 0 0 0
...............................................................................................................................................................................................................................................................................................................................................................................................................GAAACTAACTCTAAGCGGT.................................................................................................................................................. 19 3 19 0.05 1 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTTGATCAGAATACC........................ 19 3 20 0.05 1 0 0 0 0 0 0 1 0 0
..............................................................................................................................................................................................................................................................................................................GGGCTTAATTGTCTACGCC................................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................AGGAATCAGCGTGTGACT......................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................ACTCGGCTCATGGAAT..................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 1 0 0 0 0 0 0
........................................CAAGACTCAAGTACTGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 1 0 0 0 0

Anti-sense strand reads

GTTGTCGTACCGAAACAAGTTACGCTAGTCACCGCGGAGGGTATTGAGTTCATGACGAATTCAGGTTGTTTTAGTATTATTCTATAGTTTTAAGACTTTGAGTCAGTGGGTGTGCGTGCCGATTGGTCTTTGGTTTGGCTTACAACTTCATAAGTTTATTGTGCTCGGGCTATGCATCCGCATCTCTAACATTACGCAATCGCATTGGTGTTGCATCAGCATTGTATCCGAGAGAACCACAAGGAAACAAACTTCAACAGCAACTAAAACTTTAACAGAACGCCGTCCATTTCGAGCTAAAACCCGAATTACCAAACGCGGAGCCGACTACCTTAGGCGTACACTGATTGTGGTGTTTTTTGTATTTGTTAGGTTTAAACCACCGAAAATTAGGCTTGGCTTTGATTGGCATTCGCGAAAGATTGATTTAAGCCGATTAGATTGATTTACAAGACACTGGGACGGGTATCGAAAAGGTAAAACATAATTGCTCAAACATTAAGAGGGAAAAATCCTGGCATAAAACAACTAGTTTTATGGTCGTTGTCGTGGGTGGTGGTGTCA
***********************************************************************************************************************************************************.(((((((.(((.........)))..)))))))...(((((((....)))))))..((((((.((..((((....(((((.((((.((((........))))...........(((.......))))))).)))))..))))..))))))))...************************************************************************************************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 O002
Head
 GSM343915
embryo
 M025
embryo
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
....................................................TGACGAATTCAGGTTGTTTTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................AGAGAACCACAAGGAAAC............................................................................................................................................................................................................................................................................................................................ 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................................................TTGTTAGGTTCGAACCAC..................................................................................................................................................................................... 18 2 6 0.83 5 0 0 0 4 0 0 1 0 0 0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACTAGTTATATGATC...................... 19 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................CCGAGAGAACCAAAAGGA............................................................................................................................................................................................................................................................................................................................... 18 1 3 0.33 1 0 0 0 0 1 0 0 0 0 0
........................................................GAATGCAGGTGGTTTTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 18 2 4 0.25 1 0 0 1 0 0 0 0 0 0 0
.............................................................................................................GTGTGCGTGCGGATTGCGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................... 20 3 7 0.14 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................................................................................CAATTAGGCTTGGCTTTC................................................................................................................................................................ 18 2 7 0.14 1 0 0 0 0 0 1 0 0 0 0
..........................................................ATTCAAGTTGTTATAGTATGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 21 3 8 0.13 1 0 0 0 0 0 1 0 0 0 0
..........................................................................................................TGGGTGTGGTTGCCGATGGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................... 21 3 8 0.13 1 0 0 0 0 0 0 0 1 0 0
...........................................................................................AAGACTATGCGTCAGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 16 2 20 0.10 2 0 0 0 0 0 0 0 1 0 1
..................................................................................................................................................................................................................................................................................TCAGAACGCCGCCCAGTTC............................................................................................................................................................................................................................................................................... 19 3 12 0.08 1 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGGGAAAGATTGAATT....................................................................................................................................... 19 3 17 0.06 1 0 0 0 0 0 0 0 0 1 0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTACGGTCGTTGGCGTGG............ 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................................................................TCAACCACCGAGAATTA............................................................................................................................................................................ 17 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTAAGAGGGAAGATTC.................................................. 18 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0
............................................................................................................................................................................................................ATGGTGTAGCATCAGGAT...................................................................................................................................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:7227386-7227949 - dsi_1335 CAACAGCATGGCTTTGTTCAATGCGATCAGTGGCGCCTCCCATAACTCAAGTACTGCTTAAGTCCAA--CAAAATCA------------------------TA-----------------ATA--A-GATAT---------------------CAAAATTCTGAAACTCAGTC-------------------ACCCAC----AC-------------------------------GCACGGCTAACC-----AGAAACCAA-----AC-------CGAATGT----TGAA-GTAT-------------TCAAATAACACGAGCCCGAT--ACGTAGGCGTAGAGATTGTAATGCGTTA-------------------GCGT---AACCACA-------ACGTA----GTCGTAA----CATAGGC--TCTCTTGGTGTTCCTTT-------------------------------------GTTTGAAGTTGTCGTTGATTT-T-----------------------------GAAATTGTCTTGCGGCAGGTAAAGCTCGATTTT-GGGCTTA----ATGGTTTGCGCCTC--GGCTGATG---------GA-ATCCGCATGTGACTAACACCAC--AAAAAA------CATAA--ACAAT---------------------CC---------AAATTTGGTGGCTTT---TA-----------------------------------------------------------------------------------------------------------------------------------------------------ATC-------CGAA--CC-GAAACTAACCGTAAGCGCTTTC----TA-AC------------------------TAAATTCGGCTAA-------TCTAACT---A--AAT-GTTCTGTGACC-------CTG--CCCATA-GCTTTT-CC-ATTT----TG----TA-TTAACGA--G----TTTG--TAATTCTCCC-------------TTTTTAGGACCGTATTTTGTTGATCAAAATACCAGCAACAG-CACCCACCACCAC------------------------------------AGT
droSec2 scaffold_3:2989660-2990224 - CAACAGCATGGCTTTGTTCAATGCGATCAGTGGCGCCTCCCATAACTCAAGTACTGCTTAAGTCCAA--CAAAATCA------------------------TA-----------------ATA--A-GATAT---------------------CAAAATTCTGAAACTCAGTC-------------------ACCCAC----AC-------------------------------GCACGGCTAACC-----AGAAACCAA-----AC-------CGAATGT----TGAA-GTAT-------------TCAAATAACACGAGCCCGAT--ACGTAGGCGTAGAGATTGTAATGCGTTA-------------------GCTT---AACCACA-------ACGTA----GTCGTAA----CATAGGC--TCTCTTGGTGTTCCGTT-------------------------------------GTTTGAAGTTGTCGTTGATTT-C-----------------------------AAAATTGTCTTGCGGCAGGTAAAGCTCGATTTT-GGGCTTA----ATGGTTTGCGCCTC--GGCTGGTG---------GA-ATCCGCATGTGACTAACACCAC--AAAAAA---A--CATAA--ACAAT---------------------CC---------AAATTTGGTGGCTTT---TA-----------------------------------------------------------------------------------------------------------------------------------------------------ACC-------CGAA--CC-GAAACTAACCGTAAGCGCTTTC----TA-AC------------------------TAAATTCGGCTAA-------TCTAACT---A--AAT-GTTCTGTGACC-------CTG--CCCATA-GCTTTT-TC-ATTT----TG----TA-TTAACGA--G----TTTG--TAATTCTCCC-------------GTTTTAGGACCGTATTTTGTTGATCAAAATACCAGCAACAG-CACCCATCACCAC------------------------------------AGT
dm3 chr2L:7473150-7473706 - CAATAGCATGGCTTTGTTCAATGCGATCAGTGGCGCCTCCCATAACTCAAGTACTGCTTAAGTCCAA--CGAAATCA------------------------TA-----------------ATA--A-GATAT---------------------CAAAATTCTGAAACTCAGTC-------------------ACCCAC----AC-------------------------------GCACGGCTAACC-----AGAAACCAA-----AC-------CGATTGT----TGAA-GTAT-------------TCAAATAACACGAGCCCGAT--ACGTAGGCGTAGAGATTGTAATGCGTTA-------------------TCGT---AACCACA-------ACGTA----GTCATAA----CATAGGC--TCTCTTGGTGTTCCTTT-------------------------------------GTTTGAAGTTGTCGTTGAATT-T-----------------------------GAAATTGTCTTGCGGCAGGTAAAGCTCGATTTT-GGGCTTA----ATGGTTTGCGCCTC--GGCTGAGG---------AA-ATCCCCATGTGACTAACACCAC--AAAAAA------CATAA--ACAAT---------------------CC---------AAATTTGGTGGCTTT---TA-----------------------------------------------------------------------------------------------------------------------------------------------------ATC-------CGAA--CC-GAAACTAACCGTAAGCGCTTTC----TG-AC------------------------AAAATTCGGCTAA-------TCTAACT---A--AAT-GTTCTGTGACA-------TTT--ATTAA---------CG-AGTT----TG----TA-TTAACGA--G----TTTG--TAATTCTCCC-------------GTTTTAGGACCGTATTTTGTTGATCAAAATACCAGCAACAG-CACCCACCACCAC------------------------------------AGT
droEre2 scaffold_4929:16392995-16393556 - CAACAGCATGGCTTTGTTCAATGCGATCAGTGGCGCCTCCCATAACTCAAGTACTGCTTAAGTCCAA--CAAAATCA------------------------TA-----------------ATA--A-GATAT---------------------CAAAATTC-GAAACTCAGTC-------------------ACCCAC----AC-------------------------------ACAAGGCTAACC-----AGAAACCAC-----AC-------CGAATGT----TGAA-GTAT-------------TCAAATAACACGAGCCCGAT--TCGTGGGCGTAGAGATTGTAATGCGTTA-------------------GCGT---AACCACA-------CCGTA----GTCGTAG----CATAGGC--TCTCTTGGTGTTCCTTT-------------------------------------GTTTGATGTTGTCGGTGATTT-T-----------------------------GAAATTGTCTTGCGGCAGGTAAAGCTCGATTTT-GGGCTGA----ATGGTTTGCGCCTC--GGCTGAGG---------GA-ATCCGCATGTGACTAACACCAC--AAAAAC-------ATAA--GCAAT---------------------CC---------AAATTTGGTGGCTTT---TA-----------------------------------------------------------------------------------------------------------------------------------------------------ATC-------CGAA--AC-GAAACTAACCGTAAGCGCTATC----TG-AC------------------------AAAATTCGGCTAA-------TCTAACT---A--AAT-GTTCCGTGACC-------CTA--CCCATA-GCTTTT-CC-ATTT----TG----TA-TTAACGA--G----TTTG--CAATTCTCCC-------------TTTTTAGGACCGTATTTTGTTGATCAAAATACCAGCAACAG-CACCCACCACCAC------------------------------------AGT
droYak3 2L:5423323-5423915 + CAATAGCATGGCTTTGTTCAATGCGATCAGTGGCGCCTCCCATAACTCAAGTACTGCTTAAGTCCAA--CAAAAATC---------------A--------TA-----------------ATA--A-GATAT--------------CAAATATCAAAATTCTGAAACTCAGTC---------------AGTTACCCAC----AC-------------------------------GCACGGCTAACC-----AGAAACCAAACCAAAC-------CGAATGT----TGAA-GTAT-------------TCAAATAACACGAGCTCGAT--ACGTGGGCGTAGAGATTGTAATGCGTTA-------------------GCGT---AACCACACGTAACCATGTA----GTCGTAA----CATAGAC--TCTTTTGGTGTTCCTTT-------------------------------------GTTTGAAGTTGTCGTTGATTT-T-----------------------------CAAATTGTCTTGCGGCAGGTAAAGCTCGATTTT-GGGCTTA----ATGGTTTGCGCCTC--GGCTGAGG---------GA-ATCCGCATGTGACTAACACCAC--AAAAAA---A--CATAATAACAAT---------------------CCA--------AAATTTGGTGGCTTT---TA-----------------------------------------------------------------------------------------------------------------------------------------------------ATC-------CGAA--CC-GAAACTAACCGTAAGCGCTTTC----TG-AC------------------------AAAATTCGGCTAA-------TCTAACT---A--AAT-GTTCCGTGATC-------CTA--TCCCTA-GCTTTT-CC-ATTT----TG----TA-TTAACGA--A----TTTG--TAATTCTCCC------------TTTTTTAGGACCGTATTTTGTTGATCAAAGTACCAGCAACAG-CACCCAACACCAC------------------------------------AGT
droEug1 scf7180000409463:673333-673922 - CAACAGCATGGCTTTGTTCAATGCGATCAGTGGCGCCTCCCATAACTCAAGTACTGCTTAAGTTCAA--CAAAATCAT-----------AAAAA---------------------------AA--A-GATAC---------------------CAAAATTCAGAAACTCAGTC-------------------ACCCAC----AC-------------------------------GCACAGCTAACC-----AGAAAACAA-----AA-------CGAATGT----TGAA-GTAT-------------ACAAATAACACTAGCCTACA--ACGTAGGCGTAGAGAACGTAATGCGTTA-------------------GCGT---AACCACA-------ACGTA----GTCGTAA----CATAGAC--TCTATTGGTGTTCCTTT-------------------------------------GTTTGATGTTGTCGTTGAATT-T-----------GAATTC------------GAAATTGTCTTGCGGCAGGTAAAGCTCGGCTTT-GGGCTTA----ACGGTTTGAGTCTA--GGCTGAGG---------GA-ATGTGCATGTGACTAACACCAT--GAAAACAACCAAAAAGA--AAACC---------------------CC---------ATTTTCGGTGGCTAT---TA-----------------------------------------------------------------------------------------------------------------------------------------------------ATC-------CGAC--CCAAAAACTAACCGTAAGCGCTTTA----TG-AC------------------------AAAATTCGGCTAA-------ACTAACT---A--TACTGCTCTGTAACC-------CTT--TCCAAA-GCTTCTTCG-ATTC----TG----TA-TTAACCA--G----TTTG--AAATTCTCCC-------------TTTTTAGGACCGTATTTTGTTGAGCAAAATACCAGCAACAA-CACCCACCACCACCAC------CA---------------------CCACA-G
droBia1 scf7180000302422:9182870-9183429 - CAACAGCATGGCTTTGTTCAATGCGATCAGTGGCGCCTCCAATAACTCAAGTACTGCTTAAGTTCCA--GAAAACCA------------TAAAA---------------------------CA--A-GATAC---------------------CAAAATTCTGAAACTCAGTC-------------------ACCCAC----AC-------------------------------GCACAGCTAACT-----TAA---CAA-----AC-------CGAATGTTGAATGAA-GTAT-------------TCAAATAACACGAGCCCATG--ACGTAGGCGTAGAGTTCGTAATGTGTTA-------------------GCGT---AACCACA-------ACGTA----GTCGTAA----CATAGAC--TCA-CTGGTGTTCCTTT-------------------------------------GCTTGATGTTGTCGTTGAATTTC-----------------------------AAAATTGTCTTGCGGCAGGTAAAGCTCGATTTG-GGGCTTA----ACGGTTTGAAACTC--GGCTAAGG---------GA-ATCCGCTTGTGACTAACCCCAT--AAAAAC---------------------------------------CC---------CGATTTGATGGCTAA---CA-----------------------------------------------------------------------------------------------------------------------------------------------------ATC-------CGAC--CCAGAAACTAACCGTAAGCGCTTGA----TG-AC------------------------AAAATTCGGCTTA-------ACTAATC---A--TAC-GTTCTGTGACC-------CTCTTCCCAGT-GCTTTT-CC-ATTC----TG----TA-TTAACGA--G----TTTG--TAATTCTCCC-------------TTTTTAGGACCGTATTTTGTTGAGCAAAGTACCAGCAACAA-CACCCACCACCAC------------------------------------AGT
droTak1 scf7180000415604:84407-84972 + CAACAGCATGGCTTTGTTCAGTGCGATCAGTGGCGCCTCCCATAACTCAAGTACTGCTTAAGTTCAA--CAA------------------------------------------------------------------------------------AATTCAGAAACTCAGTC-------------------ACCCAC----AC-------------------------------GCACAGCTAACC-----AAACAA-AT-----GT-------TGATTAC----CGAATGTAT-------------TCAAATAACACGAGCCTGTG--ACGTAGGCGTAGATAGCGTAAAGCGTTA-------------------GCGT---AACCACA-------ACGTA----GTCGTAA----CATAGAC--TCTATTGGTGTTCCCTT-------------------------------------GTTTGATGTTGTCGTTGAATT-T-----------GAAATT------------GAAATTGTCTTGCGGCAGGTAAAGCTCGATGTT-GGGCTCA----ACGGTTTGAGTCTC--GGCTGAGG---------GA-ATGCGCACGTGACTAACCCCAC--AAAAAA---A--GAAAACTAAAAC-----------------AAACCCA--------AAATTTGGTGGCTAT---TA-----------------------------------------------------------------------------------------------------------------------------------------------------ATC-------CGAA--CC-CAGACTAACCGCAACCGCTTAA----TG-AC------------------------AAAATTTGGCTAG--CCTAAGCTAACT---A--TAC-GTTCTGTGACC-------CCCCTCCCAAA-GCTTTT-CC-ATTT----TG----TA-TTAACGA--G----TTTG--TAATTCTCCC-------------TTTTTAGGACCGTATTTTGTTGAGCAAAATACCAGCAACAA-CACCCACCACCAC------------------------------------AGT
droEle1 scf7180000491028:1569318-1569892 + CAACAGCATGGCTTTGTTCAATGCGATCAGTGGCGCCTCCCATAACTCAAGTACTGCTTAAGTCCAA--CAAAATCA------------------------TT-----------------ATA--ATGATAC---------------------CAAAATTCAGAAACTCAGTC-------------------ACCCAC----AC-------------------------------GCACAGCTAACC-----AGAAAACAG-----AT-------CGAATGT----TGAT-GTAT-------------TCAATTAACACGAGCCTGCG--GCGCAGGCGTAGCGATCGTAATGAGT----------------------------------------------A----GTCATAA----C-----------ATTGGTGTTCCTTT-------------------------------------GTTTGATGTTGTCGTTGAATTTGAAATTGAAATTGAATTTGAAATTGAAATTGAAATTGTCTTGCGGCAGGTAAAGCTCGATTTT-GGGCTTA----ACGGTTTGTGACTT--GGCTAAGAGG-----GAAA-ATGCGCATGTGACTAACACCAC--AAAAAC---------------------------------------CC---------AAAATTGGTGGCTAA---CA-----------------------------------------------------------------------------------------------------------------------------------------------------ATC-------CAAT--CC-AAAACTAACCGCAAGCGCTTGCCTAATG-GC------------------------AAAATCTGGCAAA-------TCTAACT---A--TAC-GTTCTGTGAACCC-----AACTACCCAAT-GCTTCT-CCATTTC----TG----TA-TTAACGA--G----TTTG--TAATTCTCCC-------------TTTTTAGGACCGTATTTTGTTGAGCAAAATACCAGCAACAA-CACCCACCACCACCAC---------------------------------AGT
droRho1 scf7180000779726:59504-60068 - CAACAGCATGGCTTTGTTCAATGCGATCAGTGGCGCCTCACATAATTCAAGTACTGCTTAAGTCCAA--CAAAATCA------------------------TT-----------------ATA--ATGATAC---------------------CAAAATTCAGAAACTCAGTC-------------------ACCCAC----AC-------------------------------GCACAGCTAACC-----AGAAAACAA-----AT-------CGAATAT----TGAA-GTAT-------------TCAATTAACACGAGCCTGCG--GCGTAGGCGTAGTGATCGTAATGCGTTA-------------------GCGT---AACCACA-------ACGTA----GTCATAA----CATAGAC--TCTATTGGTGTTCCTTT-------------------------------------GTTCGATGTTGTCGTTGAATT-T-----------------------------GAAATTGTCTTGCGGAAGGTAAAGCTCGATTTT-GGGCTTA----ACGGTTGGAGACTT--GGCTAAGA---------AG-ATGCGCATGTGACTAACCCCAT--AAAACA------CATGA--AAAAC---------------------CC---------AGAATTGGTGGCTAC---TA-----------------------------------------------------------------------------------------------------------------------------------------------------ATC-------CAAC--CC-AAAACTAACCGCAAGCGCTTTT----TG-GC------------------------TAAATTTGGCAAA-------ACTAACC---A--TAC-GTTCTGTGACC-------CTT--CCCAAT-GCTTTT-CC-ATTT----TG----TA-TTAACGA--C----TTTG--TAATTCTCCC-------------TTTTTAGGACCGTATTTTGTTGAGCAAAATACCAGCAACAA-CACCCACCACCAC------------------------------------AGT
droFic1 scf7180000454115:213951-214588 - CAACAGCATGGCTTTGTTCAATGCGATCAGTGGCGCCTCCCATAACTCAAGTACTGCTTAAGTCCAA--CAAAATCAAAATCAAAACCAAAAACCA----------------TTAAA----AA--C-GATAT---------------------CAAAATTCAGACACTCAGTC-------------------ACCCAC----AC-----------------------------ACGCACAGCTAACCAC---AGAAACCAA-----AT-------CGAATAT----TGAA-GTAT-------------TCAAATAACACGAGA---------GTTGGCGTAGAGAACGTAATGCGTTAA------CGTTAGCGTAACCA--CGTAACCACA-------ACGTA----GTCGTAAC---CATAGAC--TCTATTGGTGTTCCTTT-------------------------------------GTTTGATGTTGTCGTTGTCGTTG-------AATTGAATTTGAAATTGAAATTGAAATTGTCTTGCGGCAGGTAAAGCTCGATTTG-GGGCTTA----ACGGTTTGAGTCTC--GGCTAACT---------AA-C------TGTGACTAACCCCAG--AAAATC---T----AAA--ACTCC-----------------AAACCCAAAAACACAAGAATTGGTGGCTAT---TA-----------------------------------------------------------------------------------------------------------------------------------------------------ATT-------CGAC--TT-GAAACTAACCGTAAGCGCTTCG----TT-TC------------------------GAAATTTGGAAAA-------CCTTACT---A--ATC-GATCTGTGACC-------TCT--CCCAAT-GCTTTC-TC-ATTT----TG----TA-TTAACGT--G----TTTG--TAATTCTCCC-------------TTTTTAGGACCGTATTTTGTTGAGCAAAATACCAGCAACAA-CACCCACCACCACCAC------AA---------------CCAC---CACAGT
droKik1 scf7180000301917:13558-14205 - CAACAGCATGGCTTTGTTCAACGCAATCAGCGGCGCATCCCATAACTCAAGTACTGCTTAAGTTCAG--CAAAAACA--------------------------CAAAAA------------AA--A-GATACCAAAAC-------TCAGATATCAGATATCAGATACGTAGAT---------------AC--AGATACACGCAC-------------------------------ATTGATCTAACC-----AGAAAACAA-----AA--------GAATAC----C-AA-GTACATATACTGTATTTGAGAATAACACCAGCA-GAGAGGCGTAG-----------------------------------------GCGT---AACCACA-------ACGTATTTAGTCTTAA----CCTAGACATGTGTTTGGTGTTTCCTT-------------------------------------GTTTGATGTTGAAATTGAAAT-T-----------GAAGTTGAAATTGAAGTTGAATTTGTCTGGCGGCAGGTAAAGCGCAACTTTTGGGCTTT----ACGGTTCGAGTCTT--GGCTAAGA--------GGG-GCTCGCTTGTGACTAACACTGCACGAAAAA---T--CCTAA--AAAGT-----------------AAACCCTAAAT----CATTGTGGTGGCTAC---TA-----------------------------------------------------------------------------------------------------------------------------------------------------ATT-------CGAA--CCAAAAACTAACTGTAAGCCTC-AA----TG-CT------------------------AAATTCTAACTAA-------A-AAACT---A--TGT-GTTTTGTCAGCTTTTTTCCCC-CTAAAAT-GCTTTTGCC-ATTT----TG----TA-TTAACAA--CATTTTTTG--TAATTCTCCCAT----------TTTTTTAGGACCGTATTTTGTTGAGCAAAATACCAGCAACAA-TACCCACCACCAA------------------CACCACAACCACAACCACTGT
droAna3 scaffold_12916:15409260-15409856 + CAACAGCATGGCTTTGTTCAATGCGATCAGTGGCGCCTCCCATAACTCAAGTACAGCTTAAGTCCAA--AACA------------------------------CAAAAAAAAAAAAAAAT---ACGTAAAA--------------TCTGAAATCAAAATTCAG-AACTCAGTC-------------------ACCCAC----AC-------------------------------GCACAGCTAAGCTAACAAGAAAACAA-----AATTTATAACGAATTG----AAAA-ATAT-------------TCCAATAACACAAGCA-GCA--GCGTAGGCGTAGAGAACGTAATGCATAA-------------------CC---------------------------------TA----CATAGAA--TTGTTTGGTGTTCCTTG-------------------------------------TTTTGATGTTGTCGTTGAAAT-T-----------GAATTT------------GAAAATATCTTGCGGCAGGTAAAGCGCGATTTT-GGGCATG----ATGGTTTGCGTCTC--GGCCTAAC-------AAAA-ATCTGCATGTGACTAACTCATT--AAAAAA---A--AAAGAGAAAAAG----------------------C-AAAT----AAAATTGGTGGCTATGTGTA-----------------------------------------------------------------------------------------------------------------------------------------------------ATCCCAAATCCAAA-TCCAAGACCTAACAGTAAGCTTATT------G-GA------------------------AAAA-------------------AACT---ATTAAC-TATCTGTTAAC-------CCC-TCCACAT-ACTCTA-CC-ATTT----TT----TA-TTAACGG--A----TGTG--TACTTCTCCC-------------TTTTTAGGACCGTATTTTGTTGATCAAAATGCCAGCAACCA-CTCCCACCACCACCAT------AA---------------------CTTCAGC
droBip1 scf7180000396572:1639731-1640335 + CAACAGCATGGCTTTGTTCAATGCAATCAGTGGCGCCTCCCATAACTCAAGTACAGCTTAAGTTCAA--ACA-------------------------------CAAAAA------------AA-------ACCAAAACCTTGAAATCTGAAACCAAAATTCAG-AACTCAGTC-------------------ACCCAC----AC-------------------------------GCACAGCTAAGCTAACAAGAAAACAA-----AATTTATAACGAATTG----AAAATATAT-------------TCGAATAACACAAGCA-GCA--GAGTAGGCGTAGAGATCGTAATGCATAA-------------------CC---------------------------------TA----CATAGAC--TTGTTTGGTGTTCCTTG-------------------------------------TTTTGATGTTGTCGTTGAAAT-T-----------GAATTT------------GAAAATATCTTGCGGCAGGTAAAGCGCGATTTT-GGGCATG----ATGGTTTGCGTCTC--GGCTTAACCA-----AAAA-ATCTGCATGTGACTAACTCCTA--GAAAAA---A--AATGAGAATAATAAACAAAA-------------GC-AAAT----AACATTGGTGGCTATGTCTA-----------------------------------------------------------------------------------------------------------------------------------------------------ATCCCAAATCCAAAATCCAAAACCTAACAGTAAGCTGATT-----------------------------------------GGAAAA-------ACT-------ATTAAC-CATCTGTTAAC-------CCT-TC-CATATTCTCAA-CC-ATTT----TT----TA-TTAACGG--A----TGTG--TACTTCTCCC-------------TTTTTAGGACCGTATTTTGTTGATCAAAATGCCAGCAACCA-CTCCCACCACCACCAT------AA---------------------CTTCAGC
dp5 4_group1:4245920-4246469 - CAATAGCATGGCTTTGTTCAACGCGATCAGTGGCGCCTCACATAACTCAAGTACTGCATAAGTTACT--CAAA-CCA------------AAAAACAAAACA--CAA-------------------------------------------------AAG-------------------------------------TAC----AC-------------------------------GCACAGCTACTAA----AAAAAACAG-----AG-------ATAATA------------------------------------------------------TTCGTAGAGAGCGTAGAGCGTGAAGCGGTTCGTTACCCTAGAGTGT---AACCCCA-------GCGTA----ATCGTAGCCC--TAAAAC--TTGTTTGGTGTTCCTTT-------------------------------------GTTTGATGTTCTTGTTGAAAT-T-----------------------------GAAATTTCCTTGTGGCAGGTAAAGCGAGAATTT-GGGTTTA----AG-------------------------------------TGCATGCAACTAACACCCT--ACAAAG---GGAAAG--GGACAGTCCATCTATCTAA---CT-----------------------------------ATTGGCTATCATTATAT-AACACG-----------------------------------------------------------------------------------------------------------------------------AAC-------CGAA--CC-GAATTTAAGTGTAAGCTTTAT-----T--GA------------------------A-AATT--ACTAA--TACC----AATTGCCATTGCC-ATTCTGTTCCC-------CCTCATCGAAG-GTCTTC-CTACTAC----TG----TA-TTAATTT--G----TATC--TAATTTTACC-------------TTTTTAGGATTGTATTTTGTCGAGCAAGATACCAC-------CACCCACCACTACCACCACCACCACCACCAACAC---------------CAT
droPer2 scaffold_5:962884-963428 + CAATAGCATGGCTTTGTTCAACGCGATCAGTGGCGCCTCACATAACTCAAGTACTGCATAAGTTACT--CAAA-CCA------------AAAAACAAAACA--CAA-------------------------------------------------AAG-------------------------------------TAC----AC-------------------------------GCACAGCTACTA-----AAAAAACAG-----AG-------ATAATAT------------------------------------------------------TCGTAGAGAGCGTAGAGCGAGAAGCGGTTCGTTACCCTAGAGTGT---AACCCCA-------GCGTA----ATCGTAGCCC--TAAAAC--TTGTTTGGTGTTCCTTT-------------------------------------GTTTGATGTTCTTGTTGAAAT-T-----------------------------GAAATTTCCTTGTGGCAGGTAAAGCGAGAATTT-GGGTTTA----AG-----------------------------------------TGCAACTAACACCCT--ACAAAG---GGAAAG--GGACAGTCCATCTATCTAA---CT-----------------------------------ATTGGCTATCATTATAT-AACACG-----------------------------------------------------------------------------------------------------------------------------AAC-------CGAA--CC-GAATTTAAGTGTAAGCTTTAT-----T--GA------------------------A-AATT--ACTAA--TACC----AATTGCCATTGCC-ATTCTGTTCCC-------CCTCATCGAAG-GTCTTC-CTACTAC----TG----TA-TTAATTT--G----TATC--TAATTTTACC-------------TTTTTAGGATTGTATTTTGTCGAGCAAGATACCAC-------CACCCACCACTACCACCACCACCACCACCAACAC---------------CAT
droWil2 scf2_1100000004585:5162230-5162816 + TAATAGCATGGCCTTGTTTAATGCTATCAGTGGCGCCTCCAATAACTCAAGTACTGCTTAAGTTAAT--CACGAACG------------------------AA-----------------AAA--A----AC---------------------CAAAAAAAAAAA---AAACA-------------------ACAAAA----AC-------------------------------GCACAGTTAAAT-----ACTAAACA--------------------------------TAT-------------ATAGACAAAACGATCATCAA--ATGTAATTGTAGATGTAGCAAAATGAAA-------------------TCCT---A----------------------------A----TA----------------------TT-------------------------------------GTTTGATGTTG------AATT-C-----------------------------AAGTTATGTTTGTGGCAGGTAAAAAGCCAGTTT-C----TA----TTGGTTTGTGTCTC--GACTAACA---------AA-C--------------------T--A--AAA---CCAAAA--AAATGTTGCATGTAACTAAAAAGT-----------------------------------AATTTCAATGGCTATATTAACACTAACTGAGACTAATCTCAACACTAAGACCTCCCCCATCCAATGAATATTCAGGGTGCAGGTATTACCAACTAATAATTAACTTAAATTCCCTTTGCTTTTTTCTTATTAATCCCTTTTAAAATTTA----------TGGT--CTC--------GAAATTGATATAT-----G--T-------------------------------------GTGTAAT----A---------------------------------------ATC-GCTCTT-AT-ATTT----TACAACTA-TTAATCA--GACATTATGAATTCTTCACTT-------------TTTTTAGGATTGTATTTTGCAGAGCAAAATACCAACAACTA-CCACTCCCACC-C------------------------------------ACA
droVir3 scaffold_12963:15348747-15349349 + CAATAGCATGGCTTTATTCAATGCGATCAGTGGGGCCTCACATAACTCAAGTACAGCTTAAGTTCAA--AACC---A------------AACAAAA----------------ACAAA---AAC--A-GTT------------------------AAAACAAATACCAACCAATACC---AATACCAATAC--CAATACCAATACCAATACCAATACCAAAATACACACATACTACGCACAGCTACTA-----AAAAC---G-----GT-------TT------------------------------------TAACAAAA----GCA--ACGTAGAAGCATAAATTGT---------------------------------------------------------------AGCTT---TTAAC--TTGTTTGGTGTTCCTTT-GTAATGATGTTTGATCTTTGATCTTTGACCTTTGATGTTTGATGTTGTCGTTGTT-----------------------------------------GTTGTGGCAGGTAAACTCTGAAATT-CGCCCCATACCTTGGTTTGTGTCTCTCATCTAACGGCTAAACGCAC-GCATACATATGACTAACGCCCA--GGTA------------------------------------------------------------------------TTTGGCCATCACTAAAC-AAAACT-----------------------------------------------------------------------------------------------------------------------------AAT-------CT---------TATTAAGCAATTGATATAC-----T--TA---A-------------AAAAAAAAAACGTAATTAGCTGTACT----AATT------------GCTTAAACC-------CTA--CCGAAA-AGCCAG-CC-AATT--CACG----CATTTAATTCAAA----TTTT--T--GTTTTCTGTTTTAGGTTTT----------GGTTTTGCCGTTTATTAAAGTCCATGCAAACACCAGCAAATGCCAC---------AT-----------------------ATAAA
droMoj3 scaffold_6500:18326151-18326295 + CAATAGCATGGCTTTATTCAATGCGATCAGTGGGGCCTCACATAACTCAAGTACAGCTTAAGTTCAA--AAAC---A------------AAAAACAAAATA--CCA-----------------ACAAAAAAC---------------------CAAACAATACAAATA------CCAAT---------ACACACTTAT----AC-------------------------------GCACAGCTACTA-----AAAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_10092:647-1226 - CAATAGCATGGCTTTATTCAATGCGATCAGTGGCGCCTCACATAACTCAAGTACTGCTTAAGTTCAAGCCAAAACCA------------------------AA-----------------AAA--A-AAAAT---------------------TAATAGAAAGAAAAGCATATACCAAT---------AC--ACACAT----AC-------------------------------GCACAGCTACTA-----AAAAT---G-----GT-------TATTTTT----TACA-ATAT-------------TCGCATAACAAAAGCA------ATGTAGAAG-------CGTAATTCG--------------------------------------------------------TAGCATTAAAATTG--TTGTTCGGTGTTCCTTTTGTAATG------GATGTTTGATCTTTGACTTTTGATGTTTGATGTTGTCGTTGTT-----------------------------------------ATTGTGGCAGGTAAACTGAGAATTT-CGCCCCGTCCCTTGGTTTGTGTCTC--ATCCAAATGTTAAACAAACGCCATCCATGTGACTAATTCCCA--GG-------------------------------------------------------TATTTGGTAATTAC---TA-----------------------------------------------------------------------------------------------------------------------------------------------------AAG-------C---------AAACTAACCGTAAGCAATTAC----TATACTAAACAATTAATTAACAAAAAAAGAAAAATCAACAAATATACT----AATT------------GCTTAAACC-------CTA--CCACAA-AATAGCTAG-CAAATTCATG----TAATTAATTC--A----ATTT--TA-CT-TTCCATTTTAGGTTTT----------GGTTATGCCGTTTATTAAAGTCCATGCAA-AC-CAGCAAATACCAT------------------------------------ATA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CAACAGCATGGCTTTGTTCAATGCGATCAGTGGCGCCTCCCATAACTCAAGTACTGCTTAAGTCCAA--CAAAATCA------------------------TA-----------------ATA--A-GATAT---------------------CAAAATTCTGAAACTCAGTC-------------------ACCCAC----AC-------------------------------GCACGGCTAACC-----AGAAACCAA-----AC-------CGAATGT----TGAA-GTAT-------------TCAAATAACACGAGCCCGAT--ACGTAGGCGTAGAGATTGTAATGCGTTA-------------------GCGT---AACCACA-------ACGTA----GTCGTAA----CATAGGC--TCTCTTGGTGTTCCTTT-------------------------------------GTTTGAAGTTGTCGTTGATTT-T-----------------------------GAAATTGTCTTGCGGCAGGTAAAGCTCGATTTT-GGGCTTA----ATGGTTTGCGCCTC--GGCTGATG---------GA-ATCCGCATGTGACTAACACCAC--AAAAAA------CATAA--ACAAT---------------------CC---------AAATTTGGTGGCTTT---TA-----------------------------------------------------------------------------------------------------------------------------------------------------ATC-------CGAA--CC-GAAACTAACCGTAAGCGCTTTC----TA-AC------------------------TAAATTCGGCTAA-------TCTAACT---A--AAT-GTTCTGTGACC-------CTG--CCCATA-GCTTTT-CC-ATTT----TG----TA-TTAACGA--G----TTTG--TAATTCTCCC-------------TTTTTAGGACCGTATTTTGTTGATCAAAATACCAGCAACAG-CACCCACCACCAC------------------------------------AGTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC-------CGAA--CC-GAAACTAACC....................................................................................................................................................................................................................................................................................1813.00300300000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTCGTTGATTT-T-----------------------------GAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
..................................................................................................................................AT---------------------CAAAATTCTGAAACTCAGTC-------------------ACCCAC----A.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000010000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGGACCGTATTTTGTTGATCAAAA.................................................................2511.00100000001000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTT-------------------------------------GTTTGAAGTTGTCGTTGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000000000
...................................................................................................................................................................................................................................................AACC-----AGAAACCAA-----AC-------CGAATGT----T.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000000000100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTT-------------------------------------GTTTGAAGTTGTCGTTGATTT-.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAGTTGTCGTTGATTT-T-----------------------------GAAATT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000000000
...............................................................................................................................................................TCTGAAACTCAGTC-------------------ACCCAC----AC-------------------------------GCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT---A--AAT-GTTCTGTGACC-------CTG--C..........................................................................................................................................................................2111.00101000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTTCCTTT-------------------------------------GTTTGAAGTTGTCGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAGGACCGTATTTTGTTGATCAAAA.................................................................2711.00100000001000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................CATAGGC--TCTCTTGGTGTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000000000100000
droSec2
CAACAGCATGGCTTTGTTCAATGCGATCAGTGGCGCCTCCCATAACTCAAGTACTGCTTAAGTCCAA--CAAAATCA------------------------TA-----------------ATA--A-GATAT---------------------CAAAATTCTGAAACTCAGTC-------------------ACCCAC----AC-------------------------------GCACGGCTAACC-----AGAAACCAA-----AC-------CGAATGT----TGAA-GTAT-------------TCAAATAACACGAGCCCGAT--ACGTAGGCGTAGAGATTGTAATGCGTTA-------------------GCTT---AACCACA-------ACGTA----GTCGTAA----CATAGGC--TCTCTTGGTGTTCCGTT-------------------------------------GTTTGAAGTTGTCGTTGATTT-C-----------------------------AAAATTGTCTTGCGGCAGGTAAAGCTCGATTTT-GGGCTTA----ATGGTTTGCGCCTC--GGCTGGTG---------GA-ATCCGCATGTGACTAACACCAC--AAAAAA---A--CATAA--ACAAT---------------------CC---------AAATTTGGTGGCTTT---TA-----------------------------------------------------------------------------------------------------------------------------------------------------ACC-------CGAA--CC-GAAACTAACCGTAAGCGCTTTC----TA-AC------------------------TAAATTCGGCTAA-------TCTAACT---A--AAT-GTTCTGTGACC-------CTG--CCCATA-GCTTTT-TC-ATTT----TG----TA-TTAACGA--G----TTTG--TAATTCTCCC-------------GTTTTAGGACCGTATTTTGTTGATCAAAATACCAGCAACAG-CACCCATCACCAC------------------------------------AGTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCGTT-------------------------------------GTTTGAAGTTGTCGTTGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT----TG----TA-TTAACGA--G----TTTG--TAATT................................................................................................................2311.0010100
.....................................................................................................................................................................................................................................................................................................................................................................A-------------------GCTT---AACCACA-------ACGTA----GT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
........TGGCTTTGTTCAATGCGATCAGTGGCGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0011000
dm3
CAATAGCATGGCTTTGTTCAATGCGATCAGTGGCGCCTCCCATAACTCAAGTACTGCTTAAGTCCAA--CGAAATCA------------------------TA-----------------ATA--A-GATAT---------------------CAAAATTCTGAAACTCAGTC-------------------ACCCAC----AC-------------------------------GCACGGCTAACC-----AGAAACCAA-----AC-------CGATTGT----TGAA-GTAT-------------TCAAATAACACGAGCCCGAT--ACGTAGGCGTAGAGATTGTAATGCGTTA-------------------TCGT---AACCACA-------ACGTA----GTCATAA----CATAGGC--TCTCTTGGTGTTCCTTT-------------------------------------GTTTGAAGTTGTCGTTGAATT-T-----------------------------GAAATTGTCTTGCGGCAGGTAAAGCTCGATTTT-GGGCTTA----ATGGTTTGCGCCTC--GGCTGAGG---------AA-ATCCCCATGTGACTAACACCAC--AAAAAA------CATAA--ACAAT---------------------CC---------AAATTTGGTGGCTTT---TA-----------------------------------------------------------------------------------------------------------------------------------------------------ATC-------CGAA--CC-GAAACTAACCGTAAGCGCTTTC----TG-AC------------------------AAAATTCGGCTAA-------TCTAACT---A--AAT-GTTCTGTGACA-------TTT--ATTAA---------CG-AGTT----TG----TA-TTAACGA--G----TTTG--TAATTCTCCC-------------GTTTTAGGACCGTATTTTGTTGATCAAAATACCAGCAACAG-CACCCACCACCAC------------------------------------AGTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
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................................................................................................................................................................................................................................................................................................................................................................................................AACCACA-------ACGTA----GTCATAA----CATAGGC--.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................AAACCAA-----AC-------CGATTGT----TGAA-GT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGCGCTTTC----TG-AC------------------------AAAATT.................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................T--ACGTAGGCGTAGAGATTGTAATGCGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...................................................................................................................................................................................................................................................................................................................................CCGAT--ACGTAGGCGTAGAGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............GTTCAATGCGATCAGTGGCGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC-------CGAA--CC-GAAACTAACC....................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTT-GGGCTTA----ATGGTTTGCGCCTC--GGCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------------------------------------GTTTGAAGTTGTCGTTGAATT-T-----------------------------GAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTGGTGTTCCTTT-------------------------------------GTTTGAAGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CAACAGCATGGCTTTGTTCAATGCGATCAGTGGCGCCTCCCATAACTCAAGTACTGCTTAAGTCCAA--CAAAATCA------------------------TA-----------------ATA--A-GATAT---------------------CAAAATTC-GAAACTCAGTC-------------------ACCCAC----AC-------------------------------ACAAGGCTAACC-----AGAAACCAC-----AC-------CGAATGT----TGAA-GTAT-------------TCAAATAACACGAGCCCGAT--TCGTGGGCGTAGAGATTGTAATGCGTTA-------------------GCGT---AACCACA-------CCGTA----GTCGTAG----CATAGGC--TCTCTTGGTGTTCCTTT-------------------------------------GTTTGATGTTGTCGGTGATTT-T-----------------------------GAAATTGTCTTGCGGCAGGTAAAGCTCGATTTT-GGGCTGA----ATGGTTTGCGCCTC--GGCTGAGG---------GA-ATCCGCATGTGACTAACACCAC--AAAAAC-------ATAA--GCAAT---------------------CC---------AAATTTGGTGGCTTT---TA-----------------------------------------------------------------------------------------------------------------------------------------------------ATC-------CGAA--AC-GAAACTAACCGTAAGCGCTATC----TG-AC------------------------AAAATTCGGCTAA-------TCTAACT---A--AAT-GTTCCGTGACC-------CTA--CCCATA-GCTTTT-CC-ATTT----TG----TA-TTAACGA--G----TTTG--CAATTCTCCC-------------TTTTTAGGACCGTATTTTGTTGATCAAAATACCAGCAACAG-CACCCACCACCAC------------------------------------AGTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................A-------CCGTA----GTCGTAG----CATAGGC--TCTCTTGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.0020000002
...................AATGCGATCAGTGGCGCCTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................AGGC--TCTCTTGGTGTTCCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001000
..................................................................................................................................................................................................................................................................................................................................................GTAGAGATTGTAATGCGTTA-------------------GC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010001000
......................................................................................................................................................................................................................................................................................................................................AT--TCGTGGGCGTAGAGATTGTAATGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000100
..................................................................................................................................................................................................................................................................................................................................................................GTTA-------------------GCGT---AACCACA-------CCGTA----GTCGTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000100
droYak3
CAATAGCATGGCTTTGTTCAATGCGATCAGTGGCGCCTCCCATAACTCAAGTACTGCTTAAGTCCAA--CAAAAATC---------------A--------TA-----------------ATA--A-GATAT--------------CAAATATCAAAATTCTGAAACTCAGTC---------------AGTTACCCAC----AC-------------------------------GCACGGCTAACC-----AGAAACCAAACCAAAC-------CGAATGT----TGAA-GTAT-------------TCAAATAACACGAGCTCGAT--ACGTGGGCGTAGAGATTGTAATGCGTTA-------------------GCGT---AACCACACGTAACCATGTA----GTCGTAA----CATAGAC--TCTTTTGGTGTTCCTTT-------------------------------------GTTTGAAGTTGTCGTTGATTT-T-----------------------------CAAATTGTCTTGCGGCAGGTAAAGCTCGATTTT-GGGCTTA----ATGGTTTGCGCCTC--GGCTGAGG---------GA-ATCCGCATGTGACTAACACCAC--AAAAAA---A--CATAATAACAAT---------------------CCA--------AAATTTGGTGGCTTT---TA-----------------------------------------------------------------------------------------------------------------------------------------------------ATC-------CGAA--CC-GAAACTAACCGTAAGCGCTTTC----TG-AC------------------------AAAATTCGGCTAA-------TCTAACT---A--AAT-GTTCCGTGATC-------CTA--TCCCTA-GCTTTT-CC-ATTT----TG----TA-TTAACGA--A----TTTG--TAATTCTCCC------------TTTTTTAGGACCGTATTTTGTTGATCAAAGTACCAGCAACAG-CACCCAACACCAC------------------------------------AGTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----------------------------------------------------------------------------------------------------------------------------------------------------ATC-------CGAA--CC-GAAACTAACC....................................................................................................................................................................................................................................................................................2011.00100100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGA--A----TTTG--TAATTCTCCC------------T..............................................................................................2011.00100100000000
................................................................................................................................................................................................................................................................................................................................................................................................AACCACACGTAACCATGTA----GT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC----TG-AC------------------------AAAATTCGGCTAA-------TCTAAC.............................................................................................................................................................................................................2511.00101000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGG---------GA-ATCCGCATGTGACTAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000
droEug1
CAACAGCATGGCTTTGTTCAATGCGATCAGTGGCGCCTCCCATAACTCAAGTACTGCTTAAGTTCAA--CAAAATCAT-----------AAAAA---------------------------AA--A-GATAC---------------------CAAAATTCAGAAACTCAGTC-------------------ACCCAC----AC-------------------------------GCACAGCTAACC-----AGAAAACAA-----AA-------CGAATGT----TGAA-GTAT-------------ACAAATAACACTAGCCTACA--ACGTAGGCGTAGAGAACGTAATGCGTTA-------------------GCGT---AACCACA-------ACGTA----GTCGTAA----CATAGAC--TCTATTGGTGTTCCTTT-------------------------------------GTTTGATGTTGTCGTTGAATT-T-----------GAATTC------------GAAATTGTCTTGCGGCAGGTAAAGCTCGGCTTT-GGGCTTA----ACGGTTTGAGTCTA--GGCTGAGG---------GA-ATGTGCATGTGACTAACACCAT--GAAAACAACCAAAAAGA--AAACC---------------------CC---------ATTTTCGGTGGCTAT---TA-----------------------------------------------------------------------------------------------------------------------------------------------------ATC-------CGAC--CCAAAAACTAACCGTAAGCGCTTTA----TG-AC------------------------AAAATTCGGCTAA-------ACTAACT---A--TACTGCTCTGTAACC-------CTT--TCCAAA-GCTTCTTCG-ATTC----TG----TA-TTAACCA--G----TTTG--AAATTCTCCC-------------TTTTTAGGACCGTATTTTGTTGAGCAAAATACCAGCAACAA-CACCCACCACCACCAC------CA---------------------CCACA-GSizeHit CountTotal NormTotal
No Reads
droBia1
CAACAGCATGGCTTTGTTCAATGCGATCAGTGGCGCCTCCAATAACTCAAGTACTGCTTAAGTTCCA--GAAAACCA------------TAAAA---------------------------CA--A-GATAC---------------------CAAAATTCTGAAACTCAGTC-------------------ACCCAC----AC-------------------------------GCACAGCTAACT-----TAA---CAA-----AC-------CGAATGTTGAATGAA-GTAT-------------TCAAATAACACGAGCCCATG--ACGTAGGCGTAGAGTTCGTAATGTGTTA-------------------GCGT---AACCACA-------ACGTA----GTCGTAA----CATAGAC--TCA-CTGGTGTTCCTTT-------------------------------------GCTTGATGTTGTCGTTGAATTTC-----------------------------AAAATTGTCTTGCGGCAGGTAAAGCTCGATTTG-GGGCTTA----ACGGTTTGAAACTC--GGCTAAGG---------GA-ATCCGCTTGTGACTAACCCCAT--AAAAAC---------------------------------------CC---------CGATTTGATGGCTAA---CA-----------------------------------------------------------------------------------------------------------------------------------------------------ATC-------CGAC--CCAGAAACTAACCGTAAGCGCTTGA----TG-AC------------------------AAAATTCGGCTTA-------ACTAATC---A--TAC-GTTCTGTGACC-------CTCTTCCCAGT-GCTTTT-CC-ATTC----TG----TA-TTAACGA--G----TTTG--TAATTCTCCC-------------TTTTTAGGACCGTATTTTGTTGAGCAAAGTACCAGCAACAA-CACCCACCACCAC------------------------------------AGTSizeHit CountTotal NormTotal
No Reads
droTak1
CAACAGCATGGCTTTGTTCAGTGCGATCAGTGGCGCCTCCCATAACTCAAGTACTGCTTAAGTTCAA--CAA------------------------------------------------------------------------------------AATTCAGAAACTCAGTC-------------------ACCCAC----AC-------------------------------GCACAGCTAACC-----AAACAA-AT-----GT-------TGATTAC----CGAATGTAT-------------TCAAATAACACGAGCCTGTG--ACGTAGGCGTAGATAGCGTAAAGCGTTA-------------------GCGT---AACCACA-------ACGTA----GTCGTAA----CATAGAC--TCTATTGGTGTTCCCTT-------------------------------------GTTTGATGTTGTCGTTGAATT-T-----------GAAATT------------GAAATTGTCTTGCGGCAGGTAAAGCTCGATGTT-GGGCTCA----ACGGTTTGAGTCTC--GGCTGAGG---------GA-ATGCGCACGTGACTAACCCCAC--AAAAAA---A--GAAAACTAAAAC-----------------AAACCCA--------AAATTTGGTGGCTAT---TA-----------------------------------------------------------------------------------------------------------------------------------------------------ATC-------CGAA--CC-CAGACTAACCGCAACCGCTTAA----TG-AC------------------------AAAATTTGGCTAG--CCTAAGCTAACT---A--TAC-GTTCTGTGACC-------CCCCTCCCAAA-GCTTTT-CC-ATTT----TG----TA-TTAACGA--G----TTTG--TAATTCTCCC-------------TTTTTAGGACCGTATTTTGTTGAGCAAAATACCAGCAACAA-CACCCACCACCAC------------------------------------AGTSizeHit CountTotal NormTotal
No Reads
droEle1
CAACAGCATGGCTTTGTTCAATGCGATCAGTGGCGCCTCCCATAACTCAAGTACTGCTTAAGTCCAA--CAAAATCA------------------------TT-----------------ATA--ATGATAC---------------------CAAAATTCAGAAACTCAGTC-------------------ACCCAC----AC-------------------------------GCACAGCTAACC-----AGAAAACAG-----AT-------CGAATGT----TGAT-GTAT-------------TCAATTAACACGAGCCTGCG--GCGCAGGCGTAGCGATCGTAATGAGT----------------------------------------------A----GTCATAA----C-----------ATTGGTGTTCCTTT-------------------------------------GTTTGATGTTGTCGTTGAATTTGAAATTGAAATTGAATTTGAAATTGAAATTGAAATTGTCTTGCGGCAGGTAAAGCTCGATTTT-GGGCTTA----ACGGTTTGTGACTT--GGCTAAGAGG-----GAAA-ATGCGCATGTGACTAACACCAC--AAAAAC---------------------------------------CC---------AAAATTGGTGGCTAA---CA-----------------------------------------------------------------------------------------------------------------------------------------------------ATC-------CAAT--CC-AAAACTAACCGCAAGCGCTTGCCTAATG-GC------------------------AAAATCTGGCAAA-------TCTAACT---A--TAC-GTTCTGTGAACCC-----AACTACCCAAT-GCTTCT-CCATTTC----TG----TA-TTAACGA--G----TTTG--TAATTCTCCC-------------TTTTTAGGACCGTATTTTGTTGAGCAAAATACCAGCAACAA-CACCCACCACCACCAC---------------------------------AGTSizeHit CountTotal NormTotal
No Reads
droRho1
CAACAGCATGGCTTTGTTCAATGCGATCAGTGGCGCCTCACATAATTCAAGTACTGCTTAAGTCCAA--CAAAATCA------------------------TT-----------------ATA--ATGATAC---------------------CAAAATTCAGAAACTCAGTC-------------------ACCCAC----AC-------------------------------GCACAGCTAACC-----AGAAAACAA-----AT-------CGAATAT----TGAA-GTAT-------------TCAATTAACACGAGCCTGCG--GCGTAGGCGTAGTGATCGTAATGCGTTA-------------------GCGT---AACCACA-------ACGTA----GTCATAA----CATAGAC--TCTATTGGTGTTCCTTT-------------------------------------GTTCGATGTTGTCGTTGAATT-T-----------------------------GAAATTGTCTTGCGGAAGGTAAAGCTCGATTTT-GGGCTTA----ACGGTTGGAGACTT--GGCTAAGA---------AG-ATGCGCATGTGACTAACCCCAT--AAAACA------CATGA--AAAAC---------------------CC---------AGAATTGGTGGCTAC---TA-----------------------------------------------------------------------------------------------------------------------------------------------------ATC-------CAAC--CC-AAAACTAACCGCAAGCGCTTTT----TG-GC------------------------TAAATTTGGCAAA-------ACTAACC---A--TAC-GTTCTGTGACC-------CTT--CCCAAT-GCTTTT-CC-ATTT----TG----TA-TTAACGA--C----TTTG--TAATTCTCCC-------------TTTTTAGGACCGTATTTTGTTGAGCAAAATACCAGCAACAA-CACCCACCACCAC------------------------------------AGTSizeHit CountTotal NormTotal
No Reads
droFic1
CAACAGCATGGCTTTGTTCAATGCGATCAGTGGCGCCTCCCATAACTCAAGTACTGCTTAAGTCCAA--CAAAATCAAAATCAAAACCAAAAACCA----------------TTAAA----AA--C-GATAT---------------------CAAAATTCAGACACTCAGTC-------------------ACCCAC----AC-----------------------------ACGCACAGCTAACCAC---AGAAACCAA-----AT-------CGAATAT----TGAA-GTAT-------------TCAAATAACACGAGA---------GTTGGCGTAGAGAACGTAATGCGTTAA------CGTTAGCGTAACCA--CGTAACCACA-------ACGTA----GTCGTAAC---CATAGAC--TCTATTGGTGTTCCTTT-------------------------------------GTTTGATGTTGTCGTTGTCGTTG-------AATTGAATTTGAAATTGAAATTGAAATTGTCTTGCGGCAGGTAAAGCTCGATTTG-GGGCTTA----ACGGTTTGAGTCTC--GGCTAACT---------AA-C------TGTGACTAACCCCAG--AAAATC---T----AAA--ACTCC-----------------AAACCCAAAAACACAAGAATTGGTGGCTAT---TA-----------------------------------------------------------------------------------------------------------------------------------------------------ATT-------CGAC--TT-GAAACTAACCGTAAGCGCTTCG----TT-TC------------------------GAAATTTGGAAAA-------CCTTACT---A--ATC-GATCTGTGACC-------TCT--CCCAAT-GCTTTC-TC-ATTT----TG----TA-TTAACGT--G----TTTG--TAATTCTCCC-------------TTTTTAGGACCGTATTTTGTTGAGCAAAATACCAGCAACAA-CACCCACCACCACCAC------AA---------------CCAC---CACAGTSizeHit CountTotal NormTotal
No Reads
droKik1
CAACAGCATGGCTTTGTTCAACGCAATCAGCGGCGCATCCCATAACTCAAGTACTGCTTAAGTTCAG--CAAAAACA--------------------------CAAAAA------------AA--A-GATACCAAAAC-------TCAGATATCAGATATCAGATACGTAGAT---------------AC--AGATACACGCAC-------------------------------ATTGATCTAACC-----AGAAAACAA-----AA--------GAATAC----C-AA-GTACATATACTGTATTTGAGAATAACACCAGCA-GAGAGGCGTAG-----------------------------------------GCGT---AACCACA-------ACGTATTTAGTCTTAA----CCTAGACATGTGTTTGGTGTTTCCTT-------------------------------------GTTTGATGTTGAAATTGAAAT-T-----------GAAGTTGAAATTGAAGTTGAATTTGTCTGGCGGCAGGTAAAGCGCAACTTTTGGGCTTT----ACGGTTCGAGTCTT--GGCTAAGA--------GGG-GCTCGCTTGTGACTAACACTGCACGAAAAA---T--CCTAA--AAAGT-----------------AAACCCTAAAT----CATTGTGGTGGCTAC---TA-----------------------------------------------------------------------------------------------------------------------------------------------------ATT-------CGAA--CCAAAAACTAACTGTAAGCCTC-AA----TG-CT------------------------AAATTCTAACTAA-------A-AAACT---A--TGT-GTTTTGTCAGCTTTTTTCCCC-CTAAAAT-GCTTTTGCC-ATTT----TG----TA-TTAACAA--CATTTTTTG--TAATTCTCCCAT----------TTTTTTAGGACCGTATTTTGTTGAGCAAAATACCAGCAACAA-TACCCACCACCAA------------------CACCACAACCACAACCACTGTSizeHit CountTotal NormTotal
No Reads
droAna3
CAACAGCATGGCTTTGTTCAATGCGATCAGTGGCGCCTCCCATAACTCAAGTACAGCTTAAGTCCAA--AACA------------------------------CAAAAAAAAAAAAAAAT---ACGTAAAA--------------TCTGAAATCAAAATTCAG-AACTCAGTC-------------------ACCCAC----AC-------------------------------GCACAGCTAAGCTAACAAGAAAACAA-----AATTTATAACGAATTG----AAAA-ATAT-------------TCCAATAACACAAGCA-GCA--GCGTAGGCGTAGAGAACGTAATGCATAA-------------------CC---------------------------------TA----CATAGAA--TTGTTTGGTGTTCCTTG-------------------------------------TTTTGATGTTGTCGTTGAAAT-T-----------GAATTT------------GAAAATATCTTGCGGCAGGTAAAGCGCGATTTT-GGGCATG----ATGGTTTGCGTCTC--GGCCTAAC-------AAAA-ATCTGCATGTGACTAACTCATT--AAAAAA---A--AAAGAGAAAAAG----------------------C-AAAT----AAAATTGGTGGCTATGTGTA-----------------------------------------------------------------------------------------------------------------------------------------------------ATCCCAAATCCAAA-TCCAAGACCTAACAGTAAGCTTATT------G-GA------------------------AAAA-------------------AACT---ATTAAC-TATCTGTTAAC-------CCC-TCCACAT-ACTCTA-CC-ATTT----TT----TA-TTAACGG--A----TGTG--TACTTCTCCC-------------TTTTTAGGACCGTATTTTGTTGATCAAAATGCCAGCAACCA-CTCCCACCACCACCAT------AA---------------------CTTCAGCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................................................................................................................................................................................................................................................................................................................................................ATAA-------------------CC---------------------------------TA----CATAGAA--TTGTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTGTTCCTTG-------------------------------------TTTTGATGTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCTCCC-------------TTTTTAGGACC...................................................................................2011.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATGTTGTCGTTGAAAT-T-----------GA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
...............GTTCAATGCGATCAGTGGCGCCTCCCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000001
......................................................................................................................................................................................................................................................................................................................CAATAACACAAGCA-GCA--GC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1930.331010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA---A--AAAGAGAAAAAG----------------------C-AAAC----..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2040.251010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAA---A--AAAGAGAAAAAG----------------------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19180.112001001
.................................................................AA--AACA------------------------------CAAAAAAAAAAAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21190.051001000
.................................................................AA--AACA------------------------------CAAAAAAAAAAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051010000
droBip1
CAACAGCATGGCTTTGTTCAATGCAATCAGTGGCGCCTCCCATAACTCAAGTACAGCTTAAGTTCAA--ACA-------------------------------CAAAAA------------AA-------ACCAAAACCTTGAAATCTGAAACCAAAATTCAG-AACTCAGTC-------------------ACCCAC----AC-------------------------------GCACAGCTAAGCTAACAAGAAAACAA-----AATTTATAACGAATTG----AAAATATAT-------------TCGAATAACACAAGCA-GCA--GAGTAGGCGTAGAGATCGTAATGCATAA-------------------CC---------------------------------TA----CATAGAC--TTGTTTGGTGTTCCTTG-------------------------------------TTTTGATGTTGTCGTTGAAAT-T-----------GAATTT------------GAAAATATCTTGCGGCAGGTAAAGCGCGATTTT-GGGCATG----ATGGTTTGCGTCTC--GGCTTAACCA-----AAAA-ATCTGCATGTGACTAACTCCTA--GAAAAA---A--AATGAGAATAATAAACAAAA-------------GC-AAAT----AACATTGGTGGCTATGTCTA-----------------------------------------------------------------------------------------------------------------------------------------------------ATCCCAAATCCAAAATCCAAAACCTAACAGTAAGCTGATT-----------------------------------------GGAAAA-------ACT-------ATTAAC-CATCTGTTAAC-------CCT-TC-CATATTCTCAA-CC-ATTT----TT----TA-TTAACGG--A----TGTG--TACTTCTCCC-------------TTTTTAGGACCGTATTTTGTTGATCAAAATGCCAGCAACCA-CTCCCACCACCACCAT------AA---------------------CTTCAGCSizeHit CountTotal NormTotal
No Reads
dp5
CAATAGCATGGCTTTGTTCAACGCGATCAGTGGCGCCTCACATAACTCAAGTACTGCATAAGTTACT--CAAA-CCA------------AAAAACAAAACA--CAA-------------------------------------------------AAG-------------------------------------TAC----AC-------------------------------GCACAGCTACTAA----AAAAAACAG-----AG-------ATAATA------------------------------------------------------TTCGTAGAGAGCGTAGAGCGTGAAGCGGTTCGTTACCCTAGAGTGT---AACCCCA-------GCGTA----ATCGTAGCCC--TAAAAC--TTGTTTGGTGTTCCTTT-------------------------------------GTTTGATGTTCTTGTTGAAAT-T-----------------------------GAAATTTCCTTGTGGCAGGTAAAGCGAGAATTT-GGGTTTA----AG-------------------------------------TGCATGCAACTAACACCCT--ACAAAG---GGAAAG--GGACAGTCCATCTATCTAA---CT-----------------------------------ATTGGCTATCATTATAT-AACACG-----------------------------------------------------------------------------------------------------------------------------AAC-------CGAA--CC-GAATTTAAGTGTAAGCTTTAT-----T--GA------------------------A-AATT--ACTAA--TACC----AATTGCCATTGCC-ATTCTGTTCCC-------CCTCATCGAAG-GTCTTC-CTACTAC----TG----TA-TTAATTT--G----TATC--TAATTTTACC-------------TTTTTAGGATTGTATTTTGTCGAGCAAGATACCAC-------CACCCACCACTACCACCACCACCACCACCAACAC---------------CATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATAT-AACACG-----------------------------------------------------------------------------------------------------------------------------AAC-------CGAA--CC-GAATT.........................................................................................................................................................................................................................................................................................2611.0010100000000
...................................................................................................................................................................................................................................................................................ATAATA------------------------------------------------------TTCGTAGAGAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010000000
.........................................ATAACTCAAGTACTGCATAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGGATTGTATTTTGTCGAGCAA...................................................................2411.0010000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAACACCCT--ACAAAG---GGAAAG--G................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
...................AACGCGATCAGTGGCGCCTCACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000010000
droPer2
CAATAGCATGGCTTTGTTCAACGCGATCAGTGGCGCCTCACATAACTCAAGTACTGCATAAGTTACT--CAAA-CCA------------AAAAACAAAACA--CAA-------------------------------------------------AAG-------------------------------------TAC----AC-------------------------------GCACAGCTACTA-----AAAAAACAG-----AG-------ATAATAT------------------------------------------------------TCGTAGAGAGCGTAGAGCGAGAAGCGGTTCGTTACCCTAGAGTGT---AACCCCA-------GCGTA----ATCGTAGCCC--TAAAAC--TTGTTTGGTGTTCCTTT-------------------------------------GTTTGATGTTCTTGTTGAAAT-T-----------------------------GAAATTTCCTTGTGGCAGGTAAAGCGAGAATTT-GGGTTTA----AG-----------------------------------------TGCAACTAACACCCT--ACAAAG---GGAAAG--GGACAGTCCATCTATCTAA---CT-----------------------------------ATTGGCTATCATTATAT-AACACG-----------------------------------------------------------------------------------------------------------------------------AAC-------CGAA--CC-GAATTTAAGTGTAAGCTTTAT-----T--GA------------------------A-AATT--ACTAA--TACC----AATTGCCATTGCC-ATTCTGTTCCC-------CCTCATCGAAG-GTCTTC-CTACTAC----TG----TA-TTAATTT--G----TATC--TAATTTTACC-------------TTTTTAGGATTGTATTTTGTCGAGCAAGATACCAC-------CACCCACCACTACCACCACCACCACCACCAACAC---------------CATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................................................................................................................................................................................................................................................................................................................................GAGAAGCGGTTCGTTACCCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
droWil2
TAATAGCATGGCCTTGTTTAATGCTATCAGTGGCGCCTCCAATAACTCAAGTACTGCTTAAGTTAAT--CACGAACG------------------------AA-----------------AAA--A----AC---------------------CAAAAAAAAAAA---AAACA-------------------ACAAAA----AC-------------------------------GCACAGTTAAAT-----ACTAAACA--------------------------------TAT-------------ATAGACAAAACGATCATCAA--ATGTAATTGTAGATGTAGCAAAATGAAA-------------------TCCT---A----------------------------A----TA----------------------TT-------------------------------------GTTTGATGTTG------AATT-C-----------------------------AAGTTATGTTTGTGGCAGGTAAAAAGCCAGTTT-C----TA----TTGGTTTGTGTCTC--GACTAACA---------AA-C--------------------T--A--AAA---CCAAAA--AAATGTTGCATGTAACTAAAAAGT-----------------------------------AATTTCAATGGCTATATTAACACTAACTGAGACTAATCTCAACACTAAGACCTCCCCCATCCAATGAATATTCAGGGTGCAGGTATTACCAACTAATAATTAACTTAAATTCCCTTTGCTTTTTTCTTATTAATCCCTTTTAAAATTTA----------TGGT--CTC--------GAAATTGATATAT-----G--T-------------------------------------GTGTAAT----A---------------------------------------ATC-GCTCTT-AT-ATTT----TACAACTA-TTAATCA--GACATTATGAATTCTTCACTT-------------TTTTTAGGATTGTATTTTGCAGAGCAAAATACCAACAACTA-CCACTCCCACC-C------------------------------------ACASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...................................................................................................................................................................................................................................................................A--------------------------------TAT-------------ATAGACAAAACGATCATCAA--ATGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.00220000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATT-C-----------------------------AAGTTATGTTTGTGGCAGGAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAT-----G--T-------------------------------------GTGTAAT----A---------------------------------------ATC-GCT.................................................................................................................................................................2011.00100010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCTC--GACTAACA---------AA-C--------------------T--A--AAA---CC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00110000
..............................................................................................................................................................AAAAAAA---AAACA-------------------ACAAAA----AC-------------------------------G....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2140.25101000
.AATAGCATGGCCTTGTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1880.13100010
droVir3
CAATAGCATGGCTTTATTCAATGCGATCAGTGGGGCCTCACATAACTCAAGTACAGCTTAAGTTCAA--AACC---A------------AACAAAA----------------ACAAA---AAC--A-GTT------------------------AAAACAAATACCAACCAATACC---AATACCAATAC--CAATACCAATACCAATACCAATACCAAAATACACACATACTACGCACAGCTACTA-----AAAAC---G-----GT-------TT------------------------------------TAACAAAA----GCA--ACGTAGAAGCATAAATTGT---------------------------------------------------------------AGCTT---TTAAC--TTGTTTGGTGTTCCTTT-GTAATGATGTTTGATCTTTGATCTTTGACCTTTGATGTTTGATGTTGTCGTTGTT-----------------------------------------GTTGTGGCAGGTAAACTCTGAAATT-CGCCCCATACCTTGGTTTGTGTCTCTCATCTAACGGCTAAACGCAC-GCATACATATGACTAACGCCCA--GGTA------------------------------------------------------------------------TTTGGCCATCACTAAAC-AAAACT-----------------------------------------------------------------------------------------------------------------------------AAT-------CT---------TATTAAGCAATTGATATAC-----T--TA---A-------------AAAAAAAAAACGTAATTAGCTGTACT----AATT------------GCTTAAACC-------CTA--CCGAAA-AGCCAG-CC-AATT--CACG----CATTTAATTCAAA----TTTT--T--GTTTTCTGTTTTAGGTTTT----------GGTTTTGCCGTTTATTAAAGTCCATGCAAACACCAGCAAATGCCAC---------AT-----------------------ATAAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...................AATGCGATCAGTGGGGCCTCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGATCTTTGATCTTTGACCTTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000001000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATCTAACGGCTAAACGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT----------GGTTTTGCCGTTTATTAA...................................................................2011.001000000000000000000000000000000000000000000000000000000000000001
...............................................................................................................................................................................................................TACCAATACCAAAATACACACATAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000010000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTACT----AATT------------GCTTAAACC-------CTA--CCG........................................................................................................................................................................2711.001000100000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGCAGGTAAACTCTGAAATT-.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTAAAC-AAAACT-----------------------------------------------------------------------------------------------------------------------------AAT-------.......................................................................................................................................................................................................................................................................................................1911.001000000000000001000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--CACG----CATTTAATTCAAA----T..........................................................................................................................1911.001000000000000001000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................TACTACGCACAGCTACTA-----AAAAC---G-----GT-------T............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000001000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTTTGATCTTTGATCTTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000100000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................ACAGCTACTA-----AAAAC---G-----GT-------TT------------------------------------TAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000100000000000000000000000000000000000000000
droMoj3
CAATAGCATGGCTTTATTCAATGCGATCAGTGGGGCCTCACATAACTCAAGTACAGCTTAAGTTCAA--AAAC---A------------AAAAACAAAATA--CCA-----------------ACAAAAAAC---------------------CAAACAATACAAATA------CCAAT---------ACACACTTAT----AC-------------------------------GCACAGCTACTA-----AAAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....................ATGCGATCAGTGGGGCCTCACATA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000100
droGri2
CAATAGCATGGCTTTATTCAATGCGATCAGTGGCGCCTCACATAACTCAAGTACTGCTTAAGTTCAAGCCAAAACCA------------------------AA-----------------AAA--A-AAAAT---------------------TAATAGAAAGAAAAGCATATACCAAT---------AC--ACACAT----AC-------------------------------GCACAGCTACTA-----AAAAT---G-----GT-------TATTTTT----TACA-ATAT-------------TCGCATAACAAAAGCA------ATGTAGAAG-------CGTAATTCG--------------------------------------------------------TAGCATTAAAATTG--TTGTTCGGTGTTCCTTTTGTAATG------GATGTTTGATCTTTGACTTTTGATGTTTGATGTTGTCGTTGTT-----------------------------------------ATTGTGGCAGGTAAACTGAGAATTT-CGCCCCGTCCCTTGGTTTGTGTCTC--ATCCAAATGTTAAACAAACGCCATCCATGTGACTAATTCCCA--GG-------------------------------------------------------TATTTGGTAATTAC---TA-----------------------------------------------------------------------------------------------------------------------------------------------------AAG-------C---------AAACTAACCGTAAGCAATTAC----TATACTAAACAATTAATTAACAAAAAAAGAAAAATCAACAAATATACT----AATT------------GCTTAAACC-------CTA--CCACAA-AATAGCTAG-CAAATTCATG----TAATTAATTC--A----ATTT--TA-CT-TTCCATTTTAGGTTTT----------GGTTATGCCGTTTATTAAAGTCCATGCAA-AC-CAGCAAATACCAT------------------------------------ATASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATG------GATGTTTGATCTTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.50110

Generated: 05/19/2015 at 03:14 AM