ID:dsi_13349 |
Coordinate:3l:16394334-16394437 - |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
exon [3l_16393928_16394333_-]; CDS [3l_16393928_16394333_-]; CDS [3l_16394438_16394710_-]; exon [3l_16394438_16394710_-]; intron [3l_16394334_16394437_-]
No Repeatable elements found
| ##################################################--------------------------------------------------------------------------------------------------------################################################## GGGGATCGAGGAGCTCCCAGGGCTCCAGCGACAGTAACAACAGCACGCGGGTGAGTAAGCCGAGCCCACGCAGGCTCCGGTTGTGGAGAACCAAACCGTATCGAATGCCGTGACTCAACAAACATTCTCCTCTTTTTCCATTCGAATTATACAGAGCGCTGCTTCCGGCTCACTGCTGTTGACGGCAGCGAATCTGGAACGCTT **************************************************...........(((((......)))))(((((.(((....))))))))..(((((((...............................))))))).........************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR618934 dsim w501 ovaries |
O002 Head |
SRR553486 Makindu_3 day-old ovaries |
GSM343915 embryo |
M024 male body |
SRR553488 RT_0-2 hours eggs |
|---|---|---|---|---|---|---|---|---|---|---|---|
| .................................................................................................................................................................................GTTGACGGCAGCGAA............ | 15 | 0 | 2 | 3.00 | 6 | 6 | 0 | 0 | 0 | 0 | 0 |
| ..............................................................................................................................................................CTGCTTCCGGCTCACTGC............................ | 18 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| .................................................................................................................................................................................GTTGACGGCAGCGAAT........... | 16 | 0 | 2 | 0.50 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ..................................................................................................................................................................................TTGACGGCAGCGAATC.......... | 16 | 0 | 2 | 0.50 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................................................................................................................AGCGAATCTGGAACGC.. | 16 | 0 | 2 | 0.50 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ...................................................TGACTAAGCCGAACCCACT...................................................................................................................................... | 19 | 3 | 14 | 0.07 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
| .....TCGAGGAGCTCACAG........................................................................................................................................................................................ | 15 | 1 | 14 | 0.07 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| .....................................................................................................................................................AACACAGCGTTGCTTCCG..................................... | 18 | 3 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 1 | 0 |
| ..................................................................................GTGGAGGACCGAACCG.......................................................................................................... | 16 | 2 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 1 |
| .........................................................................GCTTCAGTTGTGGAGAA.................................................................................................................. | 17 | 2 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
|
CCCCTAGCTCCTCGAGGGTCCCGAGGTCGCTGTCATTGTTGTCGTGCGCCCACTCATTCGGCTCGGGTGCGTCCGAGGCCAACACCTCTTGGTTTGGCATAGCTTACGGCACTGAGTTGTTTGTAAGAGGAGAAAAAGGTAAGCTTAATATGTCTCGCGACGAAGGCCGAGTGACGACAACTGCCGTCGCTTAGACCTTGCGAA
**************************************************...........(((((......)))))(((((.(((....))))))))..(((((((...............................))))))).........************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | M023 head |
SRR618934 dsim w501 ovaries |
M053 female body |
M025 embryo |
SRR553485 Chicharo_3 day-old ovaries |
SRR553487 NRT_0-2 hours eggs |
SRR553488 RT_0-2 hours eggs |
M024 male body |
SRR553486 Makindu_3 day-old ovaries |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ........................................................................................................................................................GCTCGCGACGAAGGCCGAGTG............................... | 21 | 1 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..................TCCCGAGGTCGCTGTCATTG...................................................................................................................................................................... | 20 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...............................................GCCCACTCATTCGGCTCG........................................................................................................................................... | 18 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ................................TCACTGTTGTCGTGCGCCAA........................................................................................................................................................ | 20 | 2 | 2 | 0.50 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................................................................................TCGCGCGATGAAGTCCGAGT................................ | 20 | 3 | 2 | 0.50 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .................GTCCCGAGGCCGGTGTCGTTGT..................................................................................................................................................................... | 22 | 3 | 2 | 0.50 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| .................................................................................................................................................................................CAACTGCCGTCGCTTAG.......... | 17 | 0 | 2 | 0.50 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...........................................................................................................................................................................................CGCTTAGACCTTGCGA. | 16 | 0 | 2 | 0.50 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .................................CATGGTTGTCGTGGGCCC......................................................................................................................................................... | 18 | 2 | 3 | 0.33 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ................................CCACTGTTGTCGTGCGCCAA........................................................................................................................................................ | 20 | 3 | 6 | 0.17 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| .............GAGGGTCCCGAGCTC................................................................................................................................................................................ | 15 | 1 | 6 | 0.17 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| ......................GTGGTCGCCGTCATTGTTGTCGT............................................................................................................................................................... | 23 | 2 | 14 | 0.14 | 2 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 0 | 0 |
| ................................................................................................................................................TTAATGGGTCTCGCGACG.......................................... | 18 | 2 | 7 | 0.14 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..............AGGGTCCCGAGGGCG............................................................................................................................................................................... | 15 | 1 | 7 | 0.14 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ..............AGGGTCCCGAGGCGGCTG............................................................................................................................................................................ | 18 | 2 | 9 | 0.11 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| ......................................TTGTCGTGCGCCTACTTACT.................................................................................................................................................. | 20 | 3 | 12 | 0.08 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| ..............AGGGCCCCGAGGTCG............................................................................................................................................................................... | 15 | 1 | 16 | 0.06 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| .......................TGGTCGCCGTCATTGTTGTCGT............................................................................................................................................................... | 22 | 2 | 17 | 0.06 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| ......................TAGGTCGCCGTCATTGTT.................................................................................................................................................................... | 18 | 2 | 18 | 0.06 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| ..........................................................................................................................................................TCGCCACGAAGACCGA.................................. | 16 | 2 | 20 | 0.05 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...............................................................................................................................................CTTACTGGGTCTCGCGACG.......................................... | 19 | 3 | 20 | 0.05 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .........CCTCGAAGGTCCCCAGCTC................................................................................................................................................................................ | 19 | 3 | 20 | 0.05 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Generated: 04/24/2015 at 04:44 AM