ID:

dsi_13343

 Coordinate:

3r:4254509-4254571 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [3r_4254353_4254508_-]; CDS [3r_4254353_4254508_-]; CDS [3r_4254572_4254997_-]; exon [3r_4254572_4254997_-]; intron [3r_4254509_4254571_-]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------##################################################
CGCAACAGCAATCGCAGCAGGCACCCCAGCGACGTGGACTCTCACTATCGGTAGGATCATTGCACATATTTCTTTAGAATTTGATTTCAATCCTGCCCTGTGGTTTATTCCAGAACGAACACGTGCACAAGGCGCACGAAATGTTCCGCAAGGCAAATCGCGT
**************************************************(((((((.......((.((((.....)))).))......)))))))....(((......))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M024
male body		 SRR618934
dsim w501 ovaries
...............................................GCGGTAGGATCATTG..................................................................................................... 15 1 3 7.00 21 16 4 0 0 0 1 0 0
..........................CAGCGACGTGGACTCTCACT..................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0
............................................CTTGCGGTAGGATCATTG..................................................................................................... 18 2 1 1.00 1 0 1 0 0 0 0 0 0
................................CGTGGACTCTCACTATCGAACG............................................................................................................. 22 3 1 1.00 1 0 0 0 0 1 0 0 0
.......................CCCCAGCGACGTGGACTCTCA....................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0
...............................................TCGGTAGGATCATTG..................................................................................................... 15 0 1 1.00 1 1 0 0 0 0 0 0 0
..............................................TTCGGTAGGATCATTG..................................................................................................... 16 1 2 0.50 1 0 0 0 0 0 1 0 0
...............................................TCGGTAGGATCATTA..................................................................................................... 15 1 7 0.29 2 2 0 0 0 0 0 0 0
........................................................................................................................................TGAAATGTTCCGTAAGGC......... 18 2 7 0.14 1 0 0 0 0 0 0 1 0
.............................................TTGCGGTAGGATCATTG..................................................................................................... 17 2 7 0.14 1 1 0 0 0 0 0 0 0
.............................................CTTCGGTAGGATCATTG..................................................................................................... 17 2 8 0.13 1 1 0 0 0 0 0 0 0
......................ACCCCAGCGACTTGCAC............................................................................................................................ 17 2 19 0.05 1 0 0 0 0 0 0 0 1
..............................................TTCGGCAGGATCATTG..................................................................................................... 16 2 20 0.05 1 1 0 0 0 0 0 0 0
.......................................................................................................................................TTGAAATGTTCCGCAAGAC......... 19 3 20 0.05 1 0 0 0 0 0 0 1 0

Anti-sense strand reads

GCGTTGTCGTTAGCGTCGTCCGTGGGGTCGCTGCACCTGAGAGTGATAGCCATCCTAGTAACGTGTATAAAGAAATCTTAAACTAAAGTTAGGACGGGACACCAAATAAGGTCTTGCTTGTGCACGTGTTCCGCGTGCTTTACAAGGCGTTCCGTTTAGCGCA
**************************************************(((((((.......((.((((.....)))).))......)))))))....(((......))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 M023
head
 SRR618934
dsim w501 ovaries
...........................................................................................................................ACGTGCTGCCCGTGCTTTACA................... 21 3 3 3.00 9 9 0 0 0 0
..................................................................ATAAAAAGATCTTGAACTAAAGT.......................................................................... 23 3 1 1.00 1 0 1 0 0 0
.........................................................................................................ATAGGGTCTTGCTTGTGTA....................................... 19 2 2 0.50 1 0 0 1 0 0
...........................................................................................................................ACGTGCTGCTCGTGCTTTACA................... 21 3 3 0.33 1 1 0 0 0 0
..........................................................................................................TAAGGTCTTGCTCGTGTA....................................... 18 2 14 0.14 2 0 0 0 2 0
..............................................................GTGTATAAAGGAATC...................................................................................... 15 1 20 0.05 1 0 0 0 0 1

Generated: 04/23/2015 at 11:24 PM