dsi_13327

ACATTCGTTGGTGTCGCATATTGTTTATGGCAACCGCCGCACTTTTAGTGGTACATTTTGATTGTTAGTTTCGTTTTTATCTGTTTGTGGGCATCATTATTTATTTTTTGTTTATGTAATCCACAATGGAGGAGTGTTGTGAAATGCAAATCCCACGGCTAGAGTTGCAAAATATCCGAATGTACCGGCTAACTTGGCGTTTCTTTTTACTCTCATTTACAGATTTATAGCCGTCTGTGCTGTACTAGGATTTTTGTCAATAATAAGAAAGG ************************************************((((((((.(((.....((((.((.....((((.(((((((((...............))....((((...(((((((......)))))))...))))...))))))).))))...)).))))))).))))))))..((((...))))........................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR902009 testis	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	M053 female body	SRR553485 Chicharo_3 day-old ovaries	SRR553486 Makindu_3 day-old ovaries	GSM343915 embryo	SRR553487 NRT_0-2 hours eggs
.....................................................................................................................................................................................TTACCGGCTGACTTGGGGTTT......................................................................	21	3	4	12.25	49	49	0	0	0	0	0	0	0
.......................................................................................................................................................................................ACCGGCTGACTTGGGGTTT......................................................................	19	2	2	11.50	23	23	0	0	0	0	0	0	0
.......................................................................................................................................................................................ACCGGCTGACTTGGGGTTTAT....................................................................	21	3	1	4.00	4	4	0	0	0	0	0	0	0
......................................................................................................................................................................................TACCGGCTGACTTGGGGTTT......................................................................	20	2	1	4.00	4	4	0	0	0	0	0	0	0
.......................................................................................................................................................................................ACCGGCTGACTTGGGGTTTT.....................................................................	20	3	8	2.88	23	23	0	0	0	0	0	0	0
.......................................................................................................................................................................................ACCGGCTGACTTGGGGTTTTT....................................................................	21	3	5	2.80	14	14	0	0	0	0	0	0	0
.......................................................................................................................................................................................ACCGGCTGACTTGGGGTTTTTTT..................................................................	23	3	1	2.00	2	2	0	0	0	0	0	0	0
.CATTCGTTGGTGTCGCATATTGTTTA.....................................................................................................................................................................................................................................................	26	0	1	2.00	2	2	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................TGTGCTGTACTAGGATTTTTGTCAATA..........	27	0	1	1.00	1	0	0	0	0	1	0	0	0
.......................................................................................................................................................................................ACCGGCTGACTTGGGGTTTA.....................................................................	20	3	5	1.00	5	5	0	0	0	0	0	0	0
.....................................................................................................................................................ATCCCACCGCTAGAGTT..........................................................................................................	17	1	1	1.00	1	0	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................GCCGTCTGTGCTGTACTAGGA......................	21	0	1	1.00	1	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................................TACTAGGATTTTTGTCAATAATAAGAAA..	28	0	1	1.00	1	0	0	1	0	0	0	0	0
................................................................................................................................................................................................................................................TGTACTAGGATTTTTGTCAATAATAAGA....	28	0	1	1.00	1	0	0	0	0	0	1	0	0
.......................................................................................................................................................................................ACCGGCTGACTTGGGGTTTTTT...................................................................	22	3	4	0.75	3	3	0	0	0	0	0	0	0
.......................................................................................................................................................................................ACCGGCTGACTTGGGGTTA......................................................................	19	3	14	0.29	4	4	0	0	0	0	0	0	0
.......................................................................................................................................................................................ACCGGCTGACTTGGGGTT.......................................................................	18	2	4	0.25	1	1	0	0	0	0	0	0	0
......................................................................................................................................................................................TACCGGCTGACTTGGGGGTT......................................................................	20	3	6	0.17	1	1	0	0	0	0	0	0	0
......................................................................................................................................................................................TACCGGCTGACTTGGGGTAT......................................................................	20	3	6	0.17	1	1	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................CTGTGCTGCACTAGGCTATT..................	20	3	7	0.14	1	0	0	0	0	0	0	1	0
.......................................................................................................................TCCACCATGGAGGAGTGG.......................................................................................................................................	18	2	7	0.14	1	0	0	0	0	0	0	0	1
................................................................TTAGTTTTGTTTTTATCTG.............................................................................................................................................................................................	19	1	10	0.10	1	0	1	0	0	0	0	0	0
...........................................................GATGGTTAGTTACGTT.....................................................................................................................................................................................................	16	2	20	0.10	2	0	2	0	0	0	0	0	0
....................................................................................TTGTGGGAATCATTATTA..........................................................................................................................................................................	18	2	10	0.10	1	0	0	0	0	0	0	1	0
.................................................................................................................................AGGAGTGTTATGAAGTGCG............................................................................................................................	19	3	13	0.08	1	0	0	0	0	0	0	1	0
......................................................................................................................................................................................TGCCGGCTGACTTGGGGTTT......................................................................	20	3	15	0.07	1	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................GTACCGGCTAACTCTG...........................................................................	16	2	17	0.06	1	0	0	1	0	0	0	0	0

TGTAAGCAACCACAGCGTATAACAAATACCGTTGGCGGCGTGAAAATCACCATGTAAAACTAACAATCAAAGCAAAAATAGACAAACACCCGTAGTAATAAATAAAAAACAAATACATTAGGTGTTACCTCCTCACAACACTTTACGTTTAGGGTGCCGATCTCAACGTTTTATAGGCTTACATGGCCGATTGAACCGCAAAGAAAAATGAGAGTAAATGTCTAAATATCGGCAGACACGACATGATCCTAAAAACAGTTATTATTCTTTCC ************************************************((((((((.(((.....((((.((.....((((.(((((((((...............))....((((...(((((((......)))))))...))))...))))))).))))...)).))))))).))))))))..((((...))))........................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	M025 embryo	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	GSM343915 embryo
....................................................................................................................................................................................................................AGTAAATGTCTAAATATGTGCT......................................	22	3	2	0.50	1	1	0	0	0	0
.....................................................................................................................................................................................................................................CGGCAGACACGACAAAAT.........................	18	2	5	0.20	1	0	1	0	0	0
.................................................................................................................................................................................................................GAGTGTAAATGTCTA................................................	15	1	20	0.15	3	0	0	0	3	0
.......................................................................................................AAAAAAAAAATAGATTCGGTGTT..................................................................................................................................................	23	3	9	0.11	1	0	0	1	0	0
...........................................................................................................................................................................................................AAAAAAGAGAGTAACTGT...................................................	18	2	20	0.05	1	0	0	1	0	0
...........................................................................................................................................................................................CGATTGAGCCCCTAAGAAA..................................................................	19	3	20	0.05	1	0	0	0	0	1

Species	Coordinate	ID	Alignment
droSim2	x:7522805-7523076 -	dsi_13327	ACA----TTCGTTG---------GTGT------CGCATA---TTGTTTATGGC------AA-------------CCGC---CG-----------------C--ACTTTTAGTGGTACATT------TTGATTGTTAGTTTCGTTTTTATCTGT------TTGT-G--------------------------------------------------------GGCA----------------------------------TC-------------ATTATTTATTT---TTTGTTTATGTAATCCACAATG--G-AGGAGTGTTGTGAAAT--GCAAA----------------------TCCCA-CGGCTAGAGTTGCAAAATATCCGAATGTAC---------CG-----------G-------------------------------------------CTAACTTGGCGTTTCT---------TTTTACTCT------CATTTACAGATT--------------------------------------------------------------------------TATAGCC----GTCTGTGCTGTACTA---G-------GATTTTTGTC-------AATAATAAGAAAGG
droSec2	scaffold_44:34445-34716 -		ACA----TTCGTTG---------GTGT------CGCATA---TTGTTTATGGC------AA-------------CCGC---CG-----------------C--ACTTTTAGTGGTACATT------TTGATTGTTAGTTTCGTTTTTATCTGT------TTGT-G--------------------------------------------------------GGCA----------------------------------TC-------------ATTATTTATTT---TTTGTTTATGTAACCCACAATG--G-AGGAGTGTTGTGAAAT--GCAAA----------------------TCCCA-CGGCTAGAGTTGCAAAATATCCGAATGTAC---------CG-----------G-------------------------------------------CTAACTTGGCTTTTCT---------TTTTACTCT------CATTTACAGATT--------------------------------------------------------------------------TATAGCC----GTCTGTGCTGTACTA---G-------GATTTTTGTC-------AATAATAAGAAAGG
dm3	chrX:7950121-7950399 -		ACA----TTCGTTG---------GTGT------CGCATA---TTGTTTATGGC------AA-------------CCGC---CG-----------------C--ACTTTTAGTGGTACATT------GTGATTGTTATTTTCGTTTCTATCTGTTTGT--TTGT-G--------------------------------------------------------GGCC----------------------------------TC-------------ATTATTTATTT---TTTGTTTATGTAACCCACAATG--G-AGGAGTGTTGTGAAAT--GCAAA----------------------TCCCA-CGACTAGAGTTGCAAAATATCCGAATGTAC---------CG-----------G-------------------------------------------CTAATTTGGCTTTTT------TGTATTTTACTCT------CTTTTACAGATT--------------------------------------------------------------------------TATAGCC----GTCTGTGCTGTACTA---G-------GATTTTTGTC-------AATAATAAGAAAGG
droEre2	scaffold_4690:16858993-16859256 -		ACA----TTCGTTG---------GTGT------CGCATA---TTGTTTATGGC------AA-------------CCGC---CG-----------------C--ACTTTTAGTG--AG------------ATTGTTAGTTTCGTTTTTGTCTGTTTGT--TTGT-G--------------------------------------------------------GGCC----------------------------------CC-------------ATTATTTATTT---TTTGTTTATGTAACCCTCCGTG--G-AGGAGTGTTGTGAAAT--GCAAA----------------------TCC-------CAGAGTTGCAAAATATCCGAATGTGC---------CG-----------G-------------------------------------------CTAACTTGGCTTTT-------TGTGTTTTACTCT------CTTTTACAGATT--------------------------------------------------------------------------TATAGCC----GTCTGTGCTGTGCTA---G-------GATTTTTTCC-------AATAATAAAGAAGG
droYak3	X:13361913-13362195 +		ACA----TTCGTTG---------GTGT------CGCATA---TTGTTTATGGC------AA-------------CTGC---CG-----------------C--ACTTTTAGCG--AGATT------GTAATTGTTAGTTTCGTTTCTGTCTGTTTGT--TTGT-G--------------------------------------------------------GGCC----------------------------------CC-------------ATTATTTATTT---TTTGTTTATGTAACCCTATGTG--G-AGGAGTGTTGTGAAAT--GCAAA----------------------TCCCA-CGGCCAGAGTTGCAAAATATCCGAATGTAC---------CG-----------G-------------------------------------------CTAACTTGGTTTTTTTTTTTTTGTGTTTTACTCT------CTCTTACAGATT--------------------------------------------------------------------------TATAGCC----GTCTGTGCTGTGCTA---A-------GATTTTTTCC-------AATAATAAAGAAGG
droEug1	scf7180000409064:27627-27916 -		ACATAGATTCGTTGTCG------TTGT------AGCATT---TTGTTTATGGC------AA-------------CCAC---CG-----------------C--ACTTTTAGTG--AGAAT------GTAATTGTTAGTATTGTTTCTGTTTTTTTTT--TAGT-C--------------------------------------------------------CACCAACCT-----------------------T----TTT-------------ATTTTTTTTAT---TTTGTTTATGTAACTTTTGGTG--G-AGGTGTGTTGTAAAAT--GCAAA----------------------TCCTA-CTAACAGGGTTGCAAAATATGCGAATGTGC---------CG-----------G-------------------------------------------CTAAGCTTATTTTTT---------AATTTACTTACTTTTACATTTACAGATT--------------------------------------------------------------------------ATTAACC----GCCTGCTCT----TG---G-------GTTTTGTGCG-------AGTAATAAACAAGG
droBia1	scf7180000301623:225659-225985 +		ACATAGATTCGTTGTCGTTGTCGCTGT------CGCATT---TTGTTTATGGCAATGGCAA-------------CCGC---CG-----------------C--ACACTCAGCGAGAGATTGTAAATGTAATTGTTATTTGCGCTTC-----GT----TTCCGAGG--------------------------------------------------------GGCC----------------------------------CC-------------CCTATTTAGTT---TTTGTTTATGTAACCCGCCGCC--G-AGGAGTGTTGTGAAAT--GCAAATGCAAACGTCCCACGTCCCACGACCCA-CGACCAGAGTTGCAAAATATCCAAATGTGC---------CG-----------G-------------------------------------------CTAACTTGGCTTTCTTCCTCTCGCCCATCGCTTT------CTCTTGCAGACC------------------------------------------------------------------------CTTAAAGCCAGCCGCCG-----GCGCTA---G-------GTATCGTGGA-------ACTGACAACGCAGG
droTak1	scf7180000415141:19391-19658 -		ACATAGATTCGTT------------GT------CGCATT---TTGTTTATGGCAATGGCAA-------------CCGC---CG-----------------C--ACACTCAGTG--AGATTGTAATTGTAATTGTTATTTTTGTTTCGTTTCGT----TTCTGTGG--------------------------------------------------------GGCC----------------------------------CC-------------CTTATTTATTT---TTTGTTTATGTAACCCTCA-CG--G-AGGAGTGTTGTGAATC--CCACG----------------------TCCCA-CGACCAGAGTTGCAAAATGACCGAATATGC---------CG-----------G-------------------------------------------CTAACTTGGTTTTC----------------------------CTTGCAGATT--------------------------------------------------------------------------TACAGCCAGTCGCCT-------GCT----G-------GAATATTGCG-------ACTAATTGCGAAGG
droEle1	scf7180000491006:1446730-1446975 -		AGA----TTCACT------------GT------CGCAT----TTGTTTATGGC------AA-------------CCGC---CG-----------------C--A------------GATT------GTAATTGTTATTTTTATTTCT----GT----TTCTGT-G--------------------------------------------------------TGCC----------------------------------CT-------------CTTAATTATTT---TTTGTTTATGTAACCCT---TG--T-AGGAGTGTTGAGAAAT--GCAAA----------------------TCTCA-CGACCAGAGTTGCAAAATATGTAAATGTGC---------CG-----------G-------------------------------------------CTAACTTGGA------------------TACTTTCTT---CTTTTGCAGATT--------------------------------------------------------------------------GATAGTC----GC-T-------GCTATTGGCGACTTTAAT-ATTGGC-------AACCATATTAAAGA
droRho1	scf7180000763611:271428-271661 +		AGA----TTTGCT------------GT------CGCAT----TTGTTTATGGC------AA-------------CCGC---CG-----------------C--AGT------------TT------GTAATTGTTATTTTTGTTTCT----GT----TTTTGT-G--------------------------------------------------------CGCC-----------------------------------C-------------CTTATTTATTT---TTTGTTTATGTAACCCT---TG--G-AGGAGTGTTGTGAAAT--GCAAA----------------------TCCCA-CGACCAGAGTTGCGAAATATCCGAATATGC---------CG-----------G-------------------------------------------CTAACTTTGA------------------TACTTT------CTTTTGCAGATT--------------------------------------------------------------------------TATAGCT----GC-T-------GCTA---C-------GCT---TGTGAATTGCCAATA---ATAAAGG
droFic1	scf7180000454077:2057138-2057403 +		ACGTAGATTCGTT------------TT------CGCGTT---TTGTTTATGGC------AA-------------CCGC---CT-----------------CTCGCATTAAGTGG-ATATT------GTAATTTTTATTTTTGTTAA------TTT--TTTTG--G--------------------------------------------------------TGC-----------------------------------TT-------------CTTATTTATTT---TTTGTTTATGTAACCCTCGTTGGAG-AGAAGTGTTGTGAAAT--GCATA----------------------TCCCACCGACCAGAGTTGCAAACTATTCGAATGTGC---------CG-----------G-------------------------------------------CTAACTTGTTTTTTCT--------TTTCTATTTG------CATTTGCAGATT--------------------------------------------------------------------------CATAGG--GTCGCCT-------ACTA---A-------AAGATTTGCG-------TACA---ATAAAGG
droKik1	scf7180000302398:490145-490472 -		ACGCAGTTTCGTTG---------TCGTCG----CGCATT---TTGTTTATGC---------------------------------------------------GA------------TTTGTAAA----TTTGTTATTTTGGTTGCCT-----------------------------------------------------------------GCTGCCCCCACCGCCCCCCTTGACCCTA----TTCTA--TTCTATTTTATTTTACGCTGTATTTATGTATTTCTGGTTGTTTATGTAACCCGCCTCGAGGTGGAAGTGTTGTGAAAT--GCAAA----------------------TCT---CGACCAGAGTTGCAAAATA-----ATATGC---------CG-----------GCATAAAACAAAAATTGATGGAGCCGAAGCCGAAGGATTGACTTCTAATTTGATTTG----------TGTT---CGTTCCT---TTGCTACAGATAA----------TAATCG-------CATCGC-CTCGCC---------TCGCCTT----------------------A--------------------GC------------------------------------TGGAAAAG
droAna3	scaffold_13117:2163377-2163794 -		ACA----TTCGCT------------GT------CGCATTTTGTTGTTTATGGAAA-GCCAA--GCGAAAGAAA-ATGC---CG----------ACCGATTC---------------GATTGTAAA-----TTGTT-----------TGGGTGTTTGG--TGGG-G------------GGATTTTTCGCGGTTTCAGGCGATGCTGTTAACGATGCCGCCCCCTCC-----CGCTG--CCTATAATTTCTAATTTCTAATTT-------------CTTATTTATTT---TTTGTTTATGTAACCCGC------G-AGGAGTGTTGTGAAATGTGCAGA----------------------T-----CGACCAGAGTTGCAAAATACATACATA--GTTCTCTATATAGATAGTTCCCGGCAAA------AAA------------------------------C-----TGATTTGT----TGTTATGCTCTGTTGT------GCCTTGCAGATTTCTCTCCTTCGACATCGCCATCGCCATCGCCCTCGCCAATCGTCAATCGCCTTCGAGGATACCCA--------GCAATTGGA-----------------------GTCTCTG-C-AT-CGC-------AAT-ATAATTAAGG
droBip1	scf7180000395304:28622-29041 +		A------TTCGCTG---------TCGTCGCATTCGCATTTTGTTGTTTATGGAAA-GCCAAAACGGAGAGAAAAACGCCGCCGACCGATTACCACCGATTC--GATTG------CAGAATGTAAA----TTTGTTTTTTTTTTTTTT-TTTTTTTTT--TTGC-GGCTTTTTTCGGATGATGCTTTGGGGCTTTTCGGGATGATG---GGGATGCTGCCCCCGC-----------------TAATTTCTAATTTCTAATTT-------------CTTATTTATTT---GTTGTTTATGTAACCCGC------G-AGGAGTGTTGTGAAATGTGCAGA----------------------T-----CGACCAGAGTTGCAAAATATATATATATAG---------TAGATAGTTCCCGGACAAAAAAAAAAA------------------------------C-----TGATTTAT----TATTGTGA--------------TTTTTGCAGACTTGTCGCCTTCGTCTTCAACACCGCC------C-CC---------------------------CCAGTTGGTCCGTAATTGGAGTCG------------------------------TCGTC-------TATGGATCGGAGTA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

ACA----TTCGTTG---------GTGT------CGCATA---TTGTTTATGGC------AA-------------CCGC---CG-----------------C--ACTTTTAGTGGTACATT------TTGATTGTTAGTTTCGTTTTTATCTGT------TTGT-G--------------------------------------------------------GGCA----------------------------------TC-------------ATTATTTATTT---TTTGTTTATGTAATCCACAATG--G-AGGAGTGTTGTGAAAT--GCAAA----------------------TCCCA-CGGCTAGAGTTGCAAAATATCCGAATGTAC---------CG-----------G-------------------------------------------CTAACTTGGCGTTTCT---------TTTTACTCT------CATTTACAGATT--------------------------------------------------------------------------TATAGCC----GTCTGTGCTGTACTA---G-------GATTTTTGTC-------AATAATAAGAAAGG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.CA----TTCGTTG---------GTGT------CGCATA---TTGTTTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCTGTACTA---G-------GATTTTTGTC-------AATA..........	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCC----GTCTGTGCTGTACTA---G-------GA.............................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTA---G-------GATTTTTGTC-------AATAATAAGAAA..	28	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTACTA---G-------GATTTTTGTC-------AATAATAAGA....	28	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0

droSec2

ACA----TTCGTTG---------GTGT------CGCATA---TTGTTTATGGC------AA-------------CCGC---CG-----------------C--ACTTTTAGTGGTACATT------TTGATTGTTAGTTTCGTTTTTATCTGT------TTGT-G--------------------------------------------------------GGCA----------------------------------TC-------------ATTATTTATTT---TTTGTTTATGTAACCCACAATG--G-AGGAGTGTTGTGAAAT--GCAAA----------------------TCCCA-CGGCTAGAGTTGCAAAATATCCGAATGTAC---------CG-----------G-------------------------------------------CTAACTTGGCTTTTCT---------TTTTACTCT------CATTTACAGATT--------------------------------------------------------------------------TATAGCC----GTCTGTGCTGTACTA---G-------GATTTTTGTC-------AATAATAAGAAAGG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATT--------------------------------------------------------------------------TATAGCC----GTCTGTG..................................................	18	1	1.00	1	0	0	1	0
............................................................................................................................................................................................................................................................................................................ACCCACAATG--G-AGGAGTG..............................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1

dm3

ACA----TTCGTTG---------GTGT------CGCATA---TTGTTTATGGC------AA-------------CCGC---CG-----------------C--ACTTTTAGTGGTACATT------GTGATTGTTATTTTCGTTTCTATCTGTTTGT--TTGT-G--------------------------------------------------------GGCC----------------------------------TC-------------ATTATTTATTT---TTTGTTTATGTAACCCACAATG--G-AGGAGTGTTGTGAAAT--GCAAA----------------------TCCCA-CGACTAGAGTTGCAAAATATCCGAATGTAC---------CG-----------G-------------------------------------------CTAATTTGGCTTTTT------TGTATTTTACTCT------CTTTTACAGATT--------------------------------------------------------------------------TATAGCC----GTCTGTGCTGTACTA---G-------GATTTTTGTC-------AATAATAAGAAAGG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
............................................................................................................................................................................................................................................................................................................ACCCACAATG--G-AGGAGTG..............................................................................................................................................................................................................................................................................................................................................	18	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATT--------------------------------------------------------------------------TATAGCC----GTCTGTGCTGTACT...........................................	24	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCTGTACTA---G-------GATTTTTGTC-------A.............	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTA---G-------GATTTTTGTC-------AAT...........	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------------------------------------------------------------------------TATAGCC----GTCTGTGCTGTACTA---G-------GAAA...........................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CC----GTCTGTGCTGTACTA---G-------GATTTTTGT......................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCC----GTCTGTGCTGTACTA---G-------...............................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCC----GTCTGTGCTGTACTA---G-------T..............................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGTACTA---G-------GATTTTTGTC-------AATAA.........	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................CGC---CG-----------------C--ACTTTTAGTGGTACAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAGCC----GTCTGTGCTGTAC............................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C----GTCTGTGCTGTACTA---G-------GATTTTTGT......................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGTACTA---G-------GATTTTTGT......................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGGCTTTTT------TGTATTTTA....................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........TTG---------GTGT------CGCATA---TTGTTTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT--------------------------------------------------------------------------TATAGCC----GTCTGTGCTGTACT...........................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTACTA---G-------GATTTTTGT......................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................TCCCA-CGACTAGAGTTGCAAAATA...............................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTA---G-------GATTTTTGTC-------AATA..........	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................CCCACAATG--G-AGGAGTGTTGTG.........................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................TTGCAAAATATCCGAATGTA.....................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTA---G-------GATTTTTGTC-------AATAATAAGAT...	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---G-------GATTTTTGTC-------AATAATAAG.....	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTACTA---G-------GATTTTTGT......................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CC----GTCTGTGCTGTACTA---G-------GA.............................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT------TGTATTTTACTCT------CTCC......................................................................................................................................................	19	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

ACA----TTCGTTG---------GTGT------CGCATA---TTGTTTATGGC------AA-------------CCGC---CG-----------------C--ACTTTTAGTG--AG------------ATTGTTAGTTTCGTTTTTGTCTGTTTGT--TTGT-G--------------------------------------------------------GGCC----------------------------------CC-------------ATTATTTATTT---TTTGTTTATGTAACCCTCCGTG--G-AGGAGTGTTGTGAAAT--GCAAA----------------------TCC-------CAGAGTTGCAAAATATCCGAATGTGC---------CG-----------G-------------------------------------------CTAACTTGGCTTTT-------TGTGTTTTACTCT------CTTTTACAGATT--------------------------------------------------------------------------TATAGCC----GTCTGTGCTGTGCTA---G-------GATTTTTTCC-------AATAATAAAGAAGG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-------TGTGTTTTACTCT------CTTTTACAG.................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0
...............................................................................................................................................TTTTGTCTGTTTGT--TTGT-G--------------------------------------------------------GGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTCC-------AATAATAAAGAAGG	21	1	1.00	1	0	0	0	1	0	0	0

droYak3

ACA----TTCGTTG---------GTGT------CGCATA---TTGTTTATGGC------AA-------------CTGC---CG-----------------C--ACTTTTAGCG--AGATT------GTAATTGTTAGTTTCGTTTCTGTCTGTTTGT--TTGT-G--------------------------------------------------------GGCC----------------------------------CC-------------ATTATTTATTT---TTTGTTTATGTAACCCTATGTG--G-AGGAGTGTTGTGAAAT--GCAAA----------------------TCCCA-CGGCCAGAGTTGCAAAATATCCGAATGTAC---------CG-----------G-------------------------------------------CTAACTTGGTTTTTTTTTTTTTGTGTTTTACTCT------CTCTTACAGATT--------------------------------------------------------------------------TATAGCC----GTCTGTGCTGTGCTA---A-------GATTTTTTCC-------AATAATAAAGAAGG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATT--------------------------------------------------------------------------TATAGCC----GTCTGTGCT................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTA---A-------GATTTTTTCC-------AATA..........	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................ATGGC------AA-------------CTGC---CG-----------------C--ACTTTTAGCG--A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEug1

ACATAGATTCGTTGTCG------TTGT------AGCATT---TTGTTTATGGC------AA-------------CCAC---CG-----------------C--ACTTTTAGTG--AGAAT------GTAATTGTTAGTATTGTTTCTGTTTTTTTTT--TAGT-C--------------------------------------------------------CACCAACCT-----------------------T----TTT-------------ATTTTTTTTAT---TTTGTTTATGTAACTTTTGGTG--G-AGGTGTGTTGTAAAAT--GCAAA----------------------TCCTA-CTAACAGGGTTGCAAAATATGCGAATGTGC---------CG-----------G-------------------------------------------CTAAGCTTATTTTTT---------AATTTACTTACTTTTACATTTACAGATT--------------------------------------------------------------------------ATTAACC----GCCTGCTCT----TG---G-------GTTTTGTGCG-------AGTAATAAACAAGG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

ACATAGATTCGTTGTCGTTGTCGCTGT------CGCATT---TTGTTTATGGCAATGGCAA-------------CCGC---CG-----------------C--ACACTCAGCGAGAGATTGTAAATGTAATTGTTATTTGCGCTTC-----GT----TTCCGAGG--------------------------------------------------------GGCC----------------------------------CC-------------CCTATTTAGTT---TTTGTTTATGTAACCCGCCGCC--G-AGGAGTGTTGTGAAAT--GCAAATGCAAACGTCCCACGTCCCACGACCCA-CGACCAGAGTTGCAAAATATCCAAATGTGC---------CG-----------G-------------------------------------------CTAACTTGGCTTTCTTCCTCTCGCCCATCGCTTT------CTCTTGCAGACC------------------------------------------------------------------------CTTAAAGCCAGCCGCCG-----GCGCTA---G-------GTATCGTGGA-------ACTGACAACGCAGG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ACATAGATTCGTT------------GT------CGCATT---TTGTTTATGGCAATGGCAA-------------CCGC---CG-----------------C--ACACTCAGTG--AGATTGTAATTGTAATTGTTATTTTTGTTTCGTTTCGT----TTCTGTGG--------------------------------------------------------GGCC----------------------------------CC-------------CTTATTTATTT---TTTGTTTATGTAACCCTCA-CG--G-AGGAGTGTTGTGAATC--CCACG----------------------TCCCA-CGACCAGAGTTGCAAAATGACCGAATATGC---------CG-----------G-------------------------------------------CTAACTTGGTTTTC----------------------------CTTGCAGATT--------------------------------------------------------------------------TACAGCCAGTCGCCT-------GCT----G-------GAATATTGCG-------ACTAATTGCGAAGG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AGA----TTCACT------------GT------CGCAT----TTGTTTATGGC------AA-------------CCGC---CG-----------------C--A------------GATT------GTAATTGTTATTTTTATTTCT----GT----TTCTGT-G--------------------------------------------------------TGCC----------------------------------CT-------------CTTAATTATTT---TTTGTTTATGTAACCCT---TG--T-AGGAGTGTTGAGAAAT--GCAAA----------------------TCTCA-CGACCAGAGTTGCAAAATATGTAAATGTGC---------CG-----------G-------------------------------------------CTAACTTGGA------------------TACTTTCTT---CTTTTGCAGATT--------------------------------------------------------------------------GATAGTC----GC-T-------GCTATTGGCGACTTTAAT-ATTGGC-------AACCATATTAAAGA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AGA----TTTGCT------------GT------CGCAT----TTGTTTATGGC------AA-------------CCGC---CG-----------------C--AGT------------TT------GTAATTGTTATTTTTGTTTCT----GT----TTTTGT-G--------------------------------------------------------CGCC-----------------------------------C-------------CTTATTTATTT---TTTGTTTATGTAACCCT---TG--G-AGGAGTGTTGTGAAAT--GCAAA----------------------TCCCA-CGACCAGAGTTGCGAAATATCCGAATATGC---------CG-----------G-------------------------------------------CTAACTTTGA------------------TACTTT------CTTTTGCAGATT--------------------------------------------------------------------------TATAGCT----GC-T-------GCTA---C-------GCT---TGTGAATTGCCAATA---ATAAAGG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

ACGTAGATTCGTT------------TT------CGCGTT---TTGTTTATGGC------AA-------------CCGC---CT-----------------CTCGCATTAAGTGG-ATATT------GTAATTTTTATTTTTGTTAA------TTT--TTTTG--G--------------------------------------------------------TGC-----------------------------------TT-------------CTTATTTATTT---TTTGTTTATGTAACCCTCGTTGGAG-AGAAGTGTTGTGAAAT--GCATA----------------------TCCCACCGACCAGAGTTGCAAACTATTCGAATGTGC---------CG-----------G-------------------------------------------CTAACTTGTTTTTTCT--------TTTCTATTTG------CATTTGCAGATT--------------------------------------------------------------------------CATAGG--GTCGCCT-------ACTA---A-------AAGATTTGCG-------TACA---ATAAAGG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ACGCAGTTTCGTTG---------TCGTCG----CGCATT---TTGTTTATGC---------------------------------------------------GA------------TTTGTAAA----TTTGTTATTTTGGTTGCCT-----------------------------------------------------------------GCTGCCCCCACCGCCCCCCTTGACCCTA----TTCTA--TTCTATTTTATTTTACGCTGTATTTATGTATTTCTGGTTGTTTATGTAACCCGCCTCGAGGTGGAAGTGTTGTGAAAT--GCAAA----------------------TCT---CGACCAGAGTTGCAAAATA-----ATATGC---------CG-----------GCATAAAACAAAAATTGATGGAGCCGAAGCCGAAGGATTGACTTCTAATTTGATTTG----------TGTT---CGTTCCT---TTGCTACAGATAA----------TAATCG-------CATCGC-CTCGCC---------TCGCCTT----------------------A--------------------GC------------------------------------TGGAAAAG	Size	Hit Count	Total Norm	Total
No Reads

droAna3

ACA----TTCGCT------------GT------CGCATTTTGTTGTTTATGGAAA-GCCAA--GCGAAAGAAA-ATGC---CG----------ACCGATTC---------------GATTGTAAA-----TTGTT-----------TGGGTGTTTGG--TGGG-G------------GGATTTTTCGCGGTTTCAGGCGATGCTGTTAACGATGCCGCCCCCTCC-----CGCTG--CCTATAATTTCTAATTTCTAATTT-------------CTTATTTATTT---TTTGTTTATGTAACCCGC------G-AGGAGTGTTGTGAAATGTGCAGA----------------------T-----CGACCAGAGTTGCAAAATACATACATA--GTTCTCTATATAGATAGTTCCCGGCAAA------AAA------------------------------C-----TGATTTGT----TGTTATGCTCTGTTGT------GCCTTGCAGATTTCTCTCCTTCGACATCGCCATCGCCATCGCCCTCGCCAATCGTCAATCGCCTTCGAGGATACCCA--------GCAATTGGA-----------------------GTCTCTG-C-AT-CGC-------AAT-ATAATTAAGG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATCGCCATCGCCATCGCCC..............................................................................................................	22	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA--------GCAATTGGA-----------------------GTCTCTG-C-AT-C.......................	22	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAATCGCCTTCGAGGAT..................................................................................	19	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCTTCGAGGATACCCA--------GC...................................................................	20	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCGCCATCGCCATCGCCCT.............................................................................................................	21	3	0.67	2	0	2	0	0	0	0

droBip1

A------TTCGCTG---------TCGTCGCATTCGCATTTTGTTGTTTATGGAAA-GCCAAAACGGAGAGAAAAACGCCGCCGACCGATTACCACCGATTC--GATTG------CAGAATGTAAA----TTTGTTTTTTTTTTTTTT-TTTTTTTTT--TTGC-GGCTTTTTTCGGATGATGCTTTGGGGCTTTTCGGGATGATG---GGGATGCTGCCCCCGC-----------------TAATTTCTAATTTCTAATTT-------------CTTATTTATTT---GTTGTTTATGTAACCCGC------G-AGGAGTGTTGTGAAATGTGCAGA----------------------T-----CGACCAGAGTTGCAAAATATATATATATAG---------TAGATAGTTCCCGGACAAAAAAAAAAA------------------------------C-----TGATTTAT----TATTGTGA--------------TTTTTGCAGACTTGTCGCCTTCGTCTTCAACACCGCC------C-CC---------------------------CCAGTTGGTCCGTAATTGGAGTCG------------------------------TCGTC-------TATGGATCGGAGTA	Size	Hit Count	Total Norm	Total
No Reads

dsi_13327

x:7522855-7523026 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads